Query 026603
Match_columns 236
No_of_seqs 159 out of 1120
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.5 2.4E-14 8.1E-19 110.3 6.1 72 159-230 24-96 (114)
2 2ecl_A Ring-box protein 2; RNF 99.4 5.4E-14 1.9E-18 103.8 3.1 70 154-230 9-78 (81)
3 1x4j_A Ring finger protein 38; 99.4 4.6E-14 1.6E-18 101.6 2.6 53 158-229 21-73 (75)
4 3dpl_R Ring-box protein 1; ubi 99.4 5.4E-14 1.8E-18 110.1 2.7 72 155-230 32-103 (106)
5 2ect_A Ring finger protein 126 99.4 1.2E-13 4.2E-18 99.6 3.9 55 158-231 13-67 (78)
6 4a0k_B E3 ubiquitin-protein li 99.4 1.7E-14 5.7E-19 115.3 -1.1 72 155-230 43-114 (117)
7 2l0b_A E3 ubiquitin-protein li 99.4 1.7E-13 5.6E-18 102.9 4.3 52 158-228 38-89 (91)
8 2ep4_A Ring finger protein 24; 99.4 1.9E-13 6.6E-18 97.7 4.3 54 158-230 13-66 (74)
9 2ea6_A Ring finger protein 4; 99.4 4.2E-13 1.4E-17 93.8 5.1 58 157-229 12-69 (69)
10 2kiz_A E3 ubiquitin-protein li 99.4 2.1E-13 7E-18 96.3 3.4 54 158-230 12-65 (69)
11 1iym_A EL5; ring-H2 finger, ub 99.4 1.5E-13 5.1E-18 92.9 1.8 50 159-227 4-54 (55)
12 3ng2_A RNF4, snurf, ring finge 99.4 3.6E-13 1.2E-17 95.0 3.8 59 158-231 8-66 (71)
13 2ecm_A Ring finger and CHY zin 99.4 1.8E-13 6.1E-18 92.3 1.9 51 159-227 4-54 (55)
14 2xeu_A Ring finger protein 4; 99.3 8.2E-13 2.8E-17 91.0 3.4 57 159-230 2-58 (64)
15 2d8t_A Dactylidin, ring finger 99.3 9.7E-13 3.3E-17 93.8 3.6 54 155-230 10-63 (71)
16 2djb_A Polycomb group ring fin 99.2 3.7E-12 1.3E-16 91.0 4.1 53 158-231 13-65 (72)
17 1g25_A CDK-activating kinase a 99.2 7.7E-12 2.6E-16 87.6 4.5 56 159-231 2-58 (65)
18 1chc_A Equine herpes virus-1 r 99.2 2.9E-12 9.9E-17 90.0 2.0 50 159-229 4-53 (68)
19 2ysl_A Tripartite motif-contai 99.2 8.5E-12 2.9E-16 88.5 4.1 53 159-230 19-71 (73)
20 2ecy_A TNF receptor-associated 99.2 7.6E-12 2.6E-16 87.8 3.6 52 158-230 13-64 (66)
21 2ecn_A Ring finger protein 141 99.2 5.3E-12 1.8E-16 89.3 2.5 51 158-231 13-63 (70)
22 2ct2_A Tripartite motif protei 99.2 1.7E-11 5.8E-16 89.5 4.9 58 158-230 13-70 (88)
23 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.9E-16 90.2 3.6 47 159-227 14-60 (81)
24 4ayc_A E3 ubiquitin-protein li 99.2 6.9E-12 2.4E-16 100.4 1.9 48 160-229 53-100 (138)
25 2yur_A Retinoblastoma-binding 99.2 1.8E-11 6E-16 88.2 3.9 53 158-230 13-66 (74)
26 4ap4_A E3 ubiquitin ligase RNF 99.1 2.6E-11 8.8E-16 93.8 4.1 58 159-231 6-63 (133)
27 1t1h_A Gspef-atpub14, armadill 99.1 2E-11 6.8E-16 88.0 3.0 51 159-230 7-57 (78)
28 2ecw_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 86.8 4.1 55 159-231 18-74 (85)
29 2d8s_A Cellular modulator of i 99.1 2.5E-11 8.5E-16 90.5 3.1 55 158-230 13-72 (80)
30 2egp_A Tripartite motif-contai 99.1 1.2E-11 4.3E-16 88.7 1.0 56 158-231 10-68 (79)
31 2ecv_A Tripartite motif-contai 99.1 3.2E-11 1.1E-15 86.9 3.0 55 159-231 18-74 (85)
32 3lrq_A E3 ubiquitin-protein li 99.1 1.7E-11 5.8E-16 93.3 1.5 52 159-230 21-72 (100)
33 3ztg_A E3 ubiquitin-protein li 99.1 6.9E-11 2.4E-15 87.6 4.0 50 158-227 11-61 (92)
34 2y43_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 90.6 2.2 51 159-230 21-71 (99)
35 2ysj_A Tripartite motif-contai 99.1 7.2E-11 2.5E-15 81.9 3.5 45 159-222 19-63 (63)
36 2ckl_A Polycomb group ring fin 99.0 7.2E-11 2.5E-15 90.4 3.4 50 159-229 14-63 (108)
37 3fl2_A E3 ubiquitin-protein li 99.0 5.7E-11 2E-15 93.0 2.5 49 159-228 51-99 (124)
38 2ecj_A Tripartite motif-contai 99.0 8.2E-11 2.8E-15 79.7 2.7 45 159-222 14-58 (58)
39 2ckl_B Ubiquitin ligase protei 99.0 7.6E-11 2.6E-15 96.5 2.3 50 159-228 53-102 (165)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-10 4.5E-15 89.7 3.3 57 159-230 71-127 (133)
41 3l11_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 92.2 -0.2 52 156-228 11-62 (115)
42 1jm7_A BRCA1, breast cancer ty 99.0 1.1E-10 3.7E-15 88.9 1.8 54 159-231 20-73 (112)
43 1z6u_A NP95-like ring finger p 98.9 2.1E-10 7.1E-15 93.9 2.6 50 159-229 77-126 (150)
44 1rmd_A RAG1; V(D)J recombinati 98.9 2.5E-10 8.7E-15 88.2 1.6 51 159-230 22-72 (116)
45 1e4u_A Transcriptional repress 98.9 7.4E-10 2.5E-14 81.9 3.9 57 158-231 9-65 (78)
46 3hct_A TNF receptor-associated 98.9 3.3E-10 1.1E-14 88.2 1.9 52 158-230 16-67 (118)
47 2ct0_A Non-SMC element 1 homol 98.9 9.8E-10 3.4E-14 81.3 3.2 53 159-230 14-66 (74)
48 2kr4_A Ubiquitin conjugation f 98.8 8.7E-10 3E-14 82.1 2.2 50 159-230 13-62 (85)
49 2kre_A Ubiquitin conjugation f 98.8 1.3E-09 4.4E-14 83.9 2.9 50 159-230 28-77 (100)
50 1wgm_A Ubiquitin conjugation f 98.8 1.7E-09 5.8E-14 83.0 2.9 50 159-230 21-71 (98)
51 1jm7_B BARD1, BRCA1-associated 98.8 7E-10 2.4E-14 86.2 -0.4 48 159-230 21-69 (117)
52 2vje_A E3 ubiquitin-protein li 98.8 2.1E-09 7.2E-14 76.1 2.1 53 156-228 4-57 (64)
53 3knv_A TNF receptor-associated 98.7 1.8E-09 6.3E-14 87.5 0.6 48 159-227 30-77 (141)
54 1bor_A Transcription factor PM 98.7 8E-10 2.7E-14 76.0 -1.5 48 158-230 4-51 (56)
55 2yu4_A E3 SUMO-protein ligase 98.7 8.6E-09 2.9E-13 77.8 3.7 53 158-228 5-63 (94)
56 2vje_B MDM4 protein; proto-onc 98.7 7.3E-09 2.5E-13 73.1 2.4 52 157-228 4-56 (63)
57 4ic3_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 76.9 0.2 45 159-229 23-68 (74)
58 2c2l_A CHIP, carboxy terminus 98.6 6.2E-09 2.1E-13 89.4 2.0 52 158-230 206-257 (281)
59 2y1n_A E3 ubiquitin-protein li 98.6 9.2E-09 3.2E-13 96.7 1.8 49 161-230 333-381 (389)
60 3hcs_A TNF receptor-associated 98.6 1.5E-08 5.1E-13 83.0 1.9 52 158-230 16-67 (170)
61 2ecg_A Baculoviral IAP repeat- 98.5 2.1E-08 7.1E-13 72.4 0.6 46 159-230 24-70 (75)
62 1wim_A KIAA0161 protein; ring 98.4 8.8E-08 3E-12 71.6 2.8 55 159-228 4-66 (94)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.4 6.5E-08 2.2E-12 68.3 1.8 52 158-229 4-60 (60)
64 2f42_A STIP1 homology and U-bo 98.4 7.9E-08 2.7E-12 81.7 2.2 51 159-230 105-155 (179)
65 3htk_C E3 SUMO-protein ligase 98.3 1.6E-07 5.4E-12 84.5 2.5 54 158-230 179-234 (267)
66 2yho_A E3 ubiquitin-protein li 98.3 8.8E-08 3E-12 70.5 0.1 45 159-229 17-62 (79)
67 2ea5_A Cell growth regulator w 98.2 3.7E-07 1.3E-11 65.4 2.0 47 158-230 13-60 (68)
68 2bay_A PRE-mRNA splicing facto 98.1 4.2E-07 1.4E-11 64.2 1.0 49 161-231 4-53 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 3.3E-07 1.1E-11 84.6 -0.9 45 159-229 294-339 (345)
70 3k1l_B Fancl; UBC, ring, RWD, 98.0 5.2E-07 1.8E-11 84.3 -1.7 59 159-229 307-374 (381)
71 3vk6_A E3 ubiquitin-protein li 97.8 5.7E-06 2E-10 64.7 2.3 50 162-231 3-52 (101)
72 3nw0_A Non-structural maintena 97.3 0.00011 3.9E-09 64.4 3.0 54 159-231 179-232 (238)
73 2lri_C Autoimmune regulator; Z 92.5 0.079 2.7E-06 37.8 2.8 35 194-228 28-62 (66)
74 2ko5_A Ring finger protein Z; 92.3 0.025 8.6E-07 43.9 0.0 50 158-231 26-76 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 92.3 0.049 1.7E-06 40.4 1.6 36 159-209 2-38 (101)
76 2k16_A Transcription initiatio 90.6 0.047 1.6E-06 39.1 -0.1 56 159-229 17-72 (75)
77 1f62_A Transcription factor WS 89.1 0.11 3.9E-06 34.4 1.0 32 194-225 19-50 (51)
78 1fp0_A KAP-1 corepressor; PHD 88.5 0.12 4E-06 39.2 0.8 59 159-235 24-82 (88)
79 2l5u_A Chromodomain-helicase-D 87.7 0.28 9.5E-06 34.1 2.2 50 158-225 9-58 (61)
80 2e6r_A Jumonji/ARID domain-con 87.7 0.067 2.3E-06 40.3 -1.0 55 156-225 12-66 (92)
81 1xwh_A Autoimmune regulator; P 86.3 0.089 3E-06 37.1 -1.0 56 159-232 7-62 (66)
82 2puy_A PHD finger protein 21A; 85.5 0.043 1.5E-06 37.9 -2.9 55 158-230 3-57 (60)
83 2yql_A PHD finger protein 21A; 83.6 0.096 3.3E-06 35.7 -1.8 50 157-224 6-55 (56)
84 1we9_A PHD finger family prote 82.2 0.12 4E-06 35.9 -1.9 55 158-226 4-59 (64)
85 1wil_A KIAA1045 protein; ring 81.7 0.89 3E-05 34.6 2.7 14 195-208 34-47 (89)
86 2ysm_A Myeloid/lymphoid or mix 81.5 0.23 7.9E-06 37.8 -0.6 51 158-223 5-55 (111)
87 1mm2_A MI2-beta; PHD, zinc fin 81.2 0.21 7.1E-06 34.7 -0.9 32 195-226 26-57 (61)
88 1wep_A PHF8; structural genomi 81.2 0.66 2.3E-05 33.5 1.8 59 155-228 7-66 (79)
89 1weu_A Inhibitor of growth fam 80.9 1 3.6E-05 34.0 2.9 32 196-229 57-89 (91)
90 3o36_A Transcription intermedi 79.2 0.31 1E-05 40.2 -0.6 33 195-227 21-53 (184)
91 3u5n_A E3 ubiquitin-protein li 77.8 0.35 1.2E-05 40.7 -0.7 32 195-226 24-55 (207)
92 1wen_A Inhibitor of growth fam 76.5 0.93 3.2E-05 32.5 1.4 32 196-229 37-69 (71)
93 1weo_A Cellulose synthase, cat 76.2 2.8 9.5E-05 32.1 4.0 55 159-227 15-69 (93)
94 2ysm_A Myeloid/lymphoid or mix 69.9 0.34 1.1E-05 36.9 -2.5 35 191-225 70-104 (111)
95 1wev_A Riken cDNA 1110020M19; 69.7 0.25 8.5E-06 36.8 -3.2 36 195-230 38-77 (88)
96 2ro1_A Transcription intermedi 69.4 0.86 2.9E-05 38.1 -0.3 33 195-227 19-51 (189)
97 3v43_A Histone acetyltransfera 69.4 3 0.0001 31.8 2.8 55 160-223 5-62 (112)
98 2yt5_A Metal-response element- 69.2 0.32 1.1E-05 33.7 -2.5 58 158-228 4-64 (66)
99 1wem_A Death associated transc 68.3 0.85 2.9E-05 32.5 -0.5 54 160-229 16-74 (76)
100 2kwj_A Zinc finger protein DPF 67.6 0.24 8.3E-06 38.3 -3.8 36 194-229 77-112 (114)
101 3asl_A E3 ubiquitin-protein li 67.3 0.79 2.7E-05 32.7 -0.8 31 195-225 38-69 (70)
102 3shb_A E3 ubiquitin-protein li 65.7 0.68 2.3E-05 33.9 -1.5 30 195-224 46-76 (77)
103 3v43_A Histone acetyltransfera 65.0 0.88 3E-05 34.9 -1.0 31 194-224 81-111 (112)
104 2e6s_A E3 ubiquitin-protein li 64.2 0.73 2.5E-05 33.6 -1.6 30 195-224 46-76 (77)
105 2lv9_A Histone-lysine N-methyl 63.4 1 3.5E-05 34.0 -0.9 31 194-225 46-76 (98)
106 3lqh_A Histone-lysine N-methyl 62.5 0.5 1.7E-05 39.9 -3.1 56 161-227 3-65 (183)
107 2ri7_A Nucleosome-remodeling f 61.0 1.2 4E-05 36.1 -1.0 52 159-225 7-59 (174)
108 2l43_A N-teminal domain from h 60.6 2.3 7.8E-05 31.6 0.6 57 159-230 24-80 (88)
109 1wee_A PHD finger family prote 59.2 1.1 3.8E-05 31.7 -1.3 54 159-227 15-68 (72)
110 1wew_A DNA-binding family prot 57.3 3.1 0.00011 29.9 0.8 33 195-227 37-74 (78)
111 2kgg_A Histone demethylase jar 56.7 0.59 2E-05 31.3 -3.0 48 162-223 4-52 (52)
112 4gne_A Histone-lysine N-methyl 55.3 3.2 0.00011 32.1 0.6 29 195-225 34-62 (107)
113 3mjh_B Early endosome antigen 54.5 2.4 8.2E-05 26.7 -0.2 13 216-228 5-17 (34)
114 3m62_A Ubiquitin conjugation f 54.1 6.3 0.00022 41.0 2.7 50 159-230 890-940 (968)
115 3i2d_A E3 SUMO-protein ligase 53.4 8.1 0.00028 36.0 3.1 39 190-230 262-302 (371)
116 2lbm_A Transcriptional regulat 53.3 11 0.00037 30.6 3.5 31 195-225 80-117 (142)
117 3ask_A E3 ubiquitin-protein li 50.4 2 6.9E-05 37.5 -1.4 31 195-225 194-225 (226)
118 4fo9_A E3 SUMO-protein ligase 48.1 11 0.00037 35.0 3.0 39 190-230 228-268 (360)
119 2vpb_A Hpygo1, pygopus homolog 47.7 6.4 0.00022 27.6 1.1 52 158-223 6-64 (65)
120 2vnf_A ING 4, P29ING4, inhibit 45.6 1.7 6E-05 29.9 -2.1 27 196-224 31-58 (60)
121 2cs3_A Protein C14ORF4, MY039 45.6 14 0.00047 28.0 2.7 51 156-220 11-62 (93)
122 2ku3_A Bromodomain-containing 42.6 9.4 0.00032 27.2 1.4 53 158-225 14-66 (71)
123 3o70_A PHD finger protein 13; 42.5 2.6 9E-05 29.8 -1.6 49 159-224 18-66 (68)
124 3c6w_A P28ING5, inhibitor of g 42.1 2.2 7.7E-05 29.3 -2.0 27 196-224 30-57 (59)
125 3mpx_A FYVE, rhogef and PH dom 41.9 5.4 0.00019 36.0 0.0 58 156-227 371-431 (434)
126 2gmg_A Hypothetical protein PF 40.4 12 0.00042 29.0 1.8 28 193-229 70-97 (105)
127 2xb1_A Pygopus homolog 2, B-ce 39.4 0.73 2.5E-05 35.3 -5.3 53 161-227 4-63 (105)
128 2cu8_A Cysteine-rich protein 2 38.3 11 0.00039 25.8 1.2 30 159-205 8-37 (76)
129 3ql9_A Transcriptional regulat 38.0 23 0.00078 28.2 3.1 31 195-225 74-111 (129)
130 2g6q_A Inhibitor of growth pro 37.6 2.9 9.9E-05 29.1 -2.0 28 196-225 32-60 (62)
131 3t7l_A Zinc finger FYVE domain 35.7 9.8 0.00034 28.0 0.6 41 156-210 16-56 (90)
132 1y02_A CARP2, FYVE-ring finger 34.5 6.7 0.00023 30.9 -0.5 53 154-224 13-65 (120)
133 2co8_A NEDD9 interacting prote 34.0 18 0.00061 25.4 1.7 30 159-205 14-43 (82)
134 1z2q_A LM5-1; membrane protein 33.9 8.7 0.0003 27.8 0.0 58 156-227 17-78 (84)
135 2dar_A PDZ and LIM domain prot 32.5 11 0.00038 26.8 0.4 29 159-205 24-52 (90)
136 2yw8_A RUN and FYVE domain-con 31.8 9.4 0.00032 27.5 -0.1 59 156-228 15-75 (82)
137 1x4i_A Inhibitor of growth pro 31.7 8.1 0.00028 27.4 -0.4 28 198-227 30-57 (70)
138 2jmi_A Protein YNG1, ING1 homo 31.6 3 0.0001 31.4 -2.9 27 198-226 50-77 (90)
139 1joc_A EEA1, early endosomal a 31.3 8.6 0.0003 30.1 -0.4 41 155-209 64-104 (125)
140 1x4u_A Zinc finger, FYVE domai 30.7 13 0.00043 26.9 0.4 43 154-210 8-50 (84)
141 1x62_A C-terminal LIM domain p 28.4 11 0.00038 26.1 -0.2 14 159-172 14-27 (79)
142 1wfk_A Zinc finger, FYVE domai 27.1 13 0.00045 27.3 0.0 38 158-209 7-44 (88)
143 1zfo_A LAsp-1; LIM domain, zin 26.0 9.9 0.00034 22.7 -0.7 28 161-205 4-31 (31)
144 1x64_A Alpha-actinin-2 associa 25.5 26 0.00088 24.8 1.3 29 159-205 24-52 (89)
145 1iml_A CRIP, cysteine rich int 25.3 17 0.00057 24.9 0.3 11 162-172 2-12 (76)
146 2l4z_A DNA endonuclease RBBP8, 23.6 22 0.00075 27.2 0.7 40 159-227 60-99 (123)
147 2jvx_A NF-kappa-B essential mo 21.6 19 0.00066 21.6 -0.0 11 216-226 3-13 (28)
148 3kv5_D JMJC domain-containing 21.1 10 0.00035 36.2 -2.1 37 191-227 53-90 (488)
149 3kqi_A GRC5, PHD finger protei 20.4 10 0.00036 26.8 -1.7 38 191-228 26-64 (75)
150 2d8x_A Protein pinch; LIM doma 20.0 22 0.00075 23.8 -0.0 12 160-171 5-16 (70)
151 1vfy_A Phosphatidylinositol-3- 20.0 21 0.00073 25.0 -0.1 35 161-209 12-46 (73)
152 2pk7_A Uncharacterized protein 20.0 28 0.00095 24.8 0.5 14 217-230 9-22 (69)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=2.4e-14 Score=110.28 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=49.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC-CCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~-~~~p~CPICR~~l~~k~ 230 (236)
....|+||++.|...................++.+++|||+||.+||.+|+.... .....||+||..|..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3458999999998764221011111112234566889999999999999995332 25679999999998765
No 2
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.4e-14 Score=103.78 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=49.0
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 154 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 154 ~Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
...+.+..+|+||++.|.+..+.. ...... +..++.++.|||+||.+||++|+. .+.+||+||..+....
T Consensus 9 w~~~~~~~~C~IC~~~~~~~C~iC--~~~~~~-~~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 9 WSWDVECDTCAICRVQVMDACLRC--QAENKQ-EDCVVVWGECNHSFHNCCMSLWVK----QNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCCCSCBTTTTBCTTSCCTTH--HHHTCT-TTCCEEEETTSCEEEHHHHHHHTT----TCCBCTTTCCBCCEEE
T ss_pred eeecCCCCCCcccChhhhccCccc--ccccCC-CceEEEeCCCCCccChHHHHHHHH----hCCCCCCcCCCcchhh
Confidence 345667889999999997753221 000111 222445557999999999999998 4579999999987654
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.6e-14 Score=101.57 Aligned_cols=53 Identities=23% Similarity=0.622 Sum_probs=44.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
.+...|+||++.|.... .+.+++|||+||.+||.+|+. .+..||+||..+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~---------------~~~~l~C~H~fh~~Ci~~w~~----~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ---------------LLRVLPCNHEFHAKCVDKWLK----ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTC---------------EEEEETTTEEEETTHHHHHHH----HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCC---------------eEEEECCCCHhHHHHHHHHHH----cCCcCcCcCCcCCCC
Confidence 46678999999887653 457789999999999999998 457899999998764
No 4
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.41 E-value=5.4e-14 Score=110.05 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=51.0
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+.+++..+|+||++.|.+..+.+........++...+.+++|||+||.+||.+|+. .+.+||+||..+..+.
T Consensus 32 ~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~----~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 32 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNREWEFQK 103 (106)
T ss_dssp EESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT----TCSBCSSSCSBCCEEE
T ss_pred ecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH----cCCcCcCCCCcceeec
Confidence 44667889999999998765322000011122334567889999999999999998 5689999999986554
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=1.2e-13 Score=99.63 Aligned_cols=55 Identities=24% Similarity=0.597 Sum_probs=45.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.+...|+||++.|.... .+.+++|||+||.+||.+|+. ....||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE---------------SVRQLPCNHLFHDSCIVPWLE----QHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTS---------------CEEECTTSCEEETTTTHHHHT----TTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCC---------------CEEEeCCCCeecHHHHHHHHH----cCCcCcCcCCccCCccc
Confidence 35678999999887653 356789999999999999997 45799999999987664
No 6
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.39 E-value=1.7e-14 Score=115.31 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=3.9
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+.+++.++|+||++.|.+....+........++...+..++|+|+||.+||.+|+. .+.+||+||.++..+.
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~----~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNREWEFQK 114 (117)
T ss_dssp EECCCC----------------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH----cCCcCCCCCCeeeeec
Confidence 45667889999999998865432000011112334556679999999999999998 5679999999986554
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=102.89 Aligned_cols=52 Identities=21% Similarity=0.542 Sum_probs=43.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
.+...|+||++.|.... .+.+++|||+||..||.+|+. .+..||+||..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~---------------~~~~l~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD---------------VATELPCHHYFHKPCVSIWLQ----KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTC---------------EEEEETTTEEEEHHHHHHHHT----TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCC---------------cEEecCCCChHHHHHHHHHHH----cCCcCcCcCccCCC
Confidence 35678999999887653 457789999999999999998 45799999998865
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=97.68 Aligned_cols=54 Identities=22% Similarity=0.650 Sum_probs=44.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.... .+.+++|||+||.+||.+|+. ....||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD---------------ELGICPCKHAFHRKCLIKWLE----VRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSS---------------CEEEETTTEEEEHHHHHHHHH----HCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCC---------------cEEEcCCCCEecHHHHHHHHH----cCCcCCCcCccccccc
Confidence 35678999999887653 356789999999999999998 3468999999986544
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.2e-13 Score=93.76 Aligned_cols=58 Identities=21% Similarity=0.523 Sum_probs=45.5
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
..+...|+||++.|.+... ....+.+++|||+||.+||++|+. .+..||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHK 69 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTT-----------TTCCEEECSSSCEEEHHHHHHHHH----HCSSCTTTCCCCCCC
T ss_pred CCCCCCCcccCcccccccc-----------ccCCeEeCCCCChhcHHHHHHHHH----cCCCCCCCCCccCcC
Confidence 3467789999999987521 012356789999999999999998 457999999998653
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=96.33 Aligned_cols=54 Identities=26% Similarity=0.580 Sum_probs=44.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.... .+.+++|||+||..||.+|+. .+..||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~---------------~~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE---------------DVRRLPCMHLFHQVCVDQWLI----TNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSS---------------CEEECTTSCEEEHHHHHHHHH----HCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCC---------------cEEEeCCCCHHHHHHHHHHHH----cCCCCcCcCccccCcC
Confidence 35678999999886543 357789999999999999998 3468999999987654
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=1.5e-13 Score=92.92 Aligned_cols=50 Identities=28% Similarity=0.714 Sum_probs=40.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~-CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
+...|+||++.|.... .+.+++ |||+||.+||.+|+. .+..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGE---------------EARFLPRCGHGFHAECVDMWLG----SHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTS---------------CCEECSSSCCEECTTHHHHTTT----TCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCC---------------ceEECCCCCCcccHHHHHHHHH----cCCcCcCCCCEeE
Confidence 4568999999887653 235566 999999999999997 4678999998864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=3.6e-13 Score=95.02 Aligned_cols=59 Identities=20% Similarity=0.510 Sum_probs=46.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.+...|+||++.|.+... ....+.+++|||+||.+||++|+. ....||+||..+..++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHT-----------TTCCEEECTTSCEEEHHHHHHHHH----HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhcccc-----------ccCCeEeCCCCChHhHHHHHHHHH----cCCCCCCCCCccChhhe
Confidence 466789999999987510 012457789999999999999998 44799999999987654
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.35 E-value=1.8e-13 Score=92.33 Aligned_cols=51 Identities=31% Similarity=0.628 Sum_probs=41.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
+...|+||++.|.+.. ..+.+++|||+||.+||.+|+.. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~--------------~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR--------------VVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTT--------------SCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCC--------------cCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 5668999999886532 14577899999999999999983 378999998864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.31 E-value=8.2e-13 Score=91.02 Aligned_cols=57 Identities=21% Similarity=0.541 Sum_probs=44.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+... ....+.+++|||+||.+||++|+. .+..||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHH-----------TTCCEEEETTSCEEEHHHHHHHHH----HCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccc-----------cCCCEEeCCCCCchhHHHHHHHHH----cCCCCCCCCccCCccc
Confidence 45689999999987520 011346789999999999999998 4579999999988765
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.7e-13 Score=93.84 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=43.7
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+..+...|+||++.|.+. .+++|||+||.+||.+|+. ....||+||..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHP------------------VSLPCKHVFCYLCVKGASW----LGKRCALCRQEIPEDF 63 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSE------------------EEETTTEEEEHHHHHHCTT----CSSBCSSSCCBCCHHH
T ss_pred ccCCCCCCCccCCcccCCC------------------EEccCCCHHHHHHHHHHHH----CCCcCcCcCchhCHhh
Confidence 3455778999999887552 4579999999999999998 4579999999987543
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.7e-12 Score=91.02 Aligned_cols=53 Identities=25% Similarity=0.524 Sum_probs=43.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.+...|+||++.|.+. +.+++|||+||..||.+|+. ....||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA-----------------TTITECLHTFCKSCIVRHFY----YSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC-----------------EECSSSCCEECHHHHHHHHH----HCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc-----------------CEECCCCCHHHHHHHHHHHH----cCCcCCCcCcccCcccc
Confidence 3567899999887663 24459999999999999997 35789999999987664
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=7.7e-12 Score=87.55 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=44.0
Q ss_pred cccccccccc-hhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQK-LLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e-~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+||++ .|.+... .+.+++|||+||..||++|+.. ....||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSL--------------KLMVNVCGHTLCESCVDLLFVR---GAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSC--------------CEEECTTCCCEEHHHHHHHHHT---TSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCcc--------------CeecCCCCCHhHHHHHHHHHHc---CCCcCCCCCCccccccc
Confidence 5678999999 7766531 2356799999999999999763 35689999999977653
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.21 E-value=2.9e-12 Score=89.95 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=41.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|+||++.+.+. +.+++|||+||..||.+|+. ....||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~~-----------------~~~~~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY-----------------SMALPCLHAFCYVCITRWIR----QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC-----------------EEETTTTEEESTTHHHHHHH----HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC-----------------cEecCCCCeeHHHHHHHHHh----CcCcCcCCChhhHhh
Confidence 456899999886542 36789999999999999998 447999999998653
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.5e-12 Score=88.49 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=42.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+. .+++|||+||..||.+|+... .....||+||..+...+
T Consensus 19 ~~~~C~IC~~~~~~~------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKP------------------VTIDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSE------------------EECTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCe------------------EEcCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCCccc
Confidence 567899999887653 456999999999999999632 24578999999987765
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=7.6e-12 Score=87.83 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=42.3
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.+.+. .+++|||+||..||++|+. .....||+||..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP------------------KQTECGHRFCESCMAALLS---SSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC------------------CCCSSSCCCCHHHHHHHHT---TSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe------------------eECCCCCHHHHHHHHHHHH---hCcCCCCCCCcCCChhh
Confidence 3567899999887653 2369999999999999996 24578999999987764
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5.3e-12 Score=89.26 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=42.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.+...|+||++.+.+ .+++|||+||.+||.+|+. ....||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~-------------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-------------------LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS-------------------EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC-------------------cccCCCCcccHHHHHHHHH----CcCcCCCcCCcccCCCc
Confidence 356789999876433 4579999999999999998 56899999999887664
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=89.46 Aligned_cols=58 Identities=24% Similarity=0.517 Sum_probs=45.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.+... ...+++|||+||..||.+|+... .....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~--------------~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQL--------------RPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSS--------------CEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCC--------------CeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCcccchh
Confidence 356789999998876431 24678999999999999999743 13478999999987654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=90.17 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=39.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
+...|+||++.|.+. .+++|||+||..||.+|+. ....||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP------------------VVTKCRHYFCESCALEHFR----ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE------------------EECTTSCEEEHHHHHHHHH----HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe------------------eEccCCCHhHHHHHHHHHH----CCCcCCCcCcccc
Confidence 566899999887553 4589999999999999998 4578999999975
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=6.9e-12 Score=100.42 Aligned_cols=48 Identities=23% Similarity=0.656 Sum_probs=40.2
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
...|+||++.|.+. .+++|||+||..||..|+. ....||+||..+..+
T Consensus 53 ~~~C~iC~~~~~~~------------------~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA------------------VTLNCAHSFCSYCINEWMK----RKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE------------------EEETTSCEEEHHHHHHHTT----TCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc------------------eECCCCCCccHHHHHHHHH----cCCcCCCCCCcCCCC
Confidence 45799999887653 4579999999999999998 567899999998654
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=88.22 Aligned_cols=53 Identities=21% Similarity=0.644 Sum_probs=42.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~-CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.+. .+++ |||+||..||++|+... ....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~p------------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA------------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC------------------EECSSSCCEECTTHHHHHHHHS--SSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC------------------eEcCCCCCHHHHHHHHHHHHhc--CCCcCCCCCCcCCCcc
Confidence 3677899999888763 4478 99999999999999843 2468999999865544
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.6e-11 Score=93.78 Aligned_cols=58 Identities=21% Similarity=0.510 Sum_probs=45.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+||++.|.+... +...+.+++|||+||.+||++|+. ....||+||..+..++.
T Consensus 6 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHH-----------TTCCEEEETTCCEEEHHHHHHHHT----TCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccc-----------cccCeEecCCCChhhHHHHHHHHH----hCCCCCCCCCcCccccc
Confidence 56789999999987510 011346789999999999999998 45699999999876653
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.13 E-value=2e-11 Score=87.96 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=42.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+. .+++|||+||..||.+|+.. ....||+|+..+...+
T Consensus 7 ~~~~C~IC~~~~~~P------------------v~~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKDP------------------VIVSTGQTYERSSIQKWLDA---GHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSSE------------------EEETTTEEEEHHHHHHHHTT---TCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccCC------------------EEcCCCCeecHHHHHHHHHH---CcCCCCCCcCCCChhh
Confidence 567899999987663 44699999999999999972 3678999999987654
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=3.3e-11 Score=86.81 Aligned_cols=55 Identities=20% Similarity=0.467 Sum_probs=43.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~--~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+||++.|.+. .+++|||+||..||..|+... ......||+||..+...+.
T Consensus 18 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLKEP------------------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCSSC------------------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred cCCCCcCCChhhCcc------------------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 567899999887653 357999999999999999752 1236889999999886543
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=90.49 Aligned_cols=55 Identities=24% Similarity=0.473 Sum_probs=43.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-----hHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-----HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG-----HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|.||++.+.+.. . .+++|. |+||.+||++|+... .+..||+||..|....
T Consensus 13 ~~~~~C~IC~~~~~~~~---------------~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES---------------P-LITPCHCTGSLHFVHQACLQQWIKSS--DTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSS---------------C-EECSSSCCSSSCCEETTHHHHHHHHH--CCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCC---------------e-eEeccccCCcCCeeCHHHHHHHHhhC--CCCCCCCCCCeeecCc
Confidence 35678999998876542 2 358996 999999999999853 3468999999987654
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=88.68 Aligned_cols=56 Identities=25% Similarity=0.471 Sum_probs=43.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC---CCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED---IRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~---~~~p~CPICR~~l~~k~~ 231 (236)
.+...|+||++.|.+. .+++|||+||..||.+|+.... .....||+||..+...+.
T Consensus 10 ~~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLTEP------------------LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECSSC------------------CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccCCe------------------eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 3567899999887653 3379999999999999997421 236789999999876543
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.2e-11 Score=86.88 Aligned_cols=55 Identities=29% Similarity=0.640 Sum_probs=43.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC--CCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE--DIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~--~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+||++.|.+. .+++|||+||..||..|+... ......||+||..+...+.
T Consensus 18 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLTQP------------------LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCSSC------------------BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccCCc------------------eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 567899999887653 346999999999999998741 1236889999999987654
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=1.7e-11 Score=93.31 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=42.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+. +.+++|||+||..||.+|+... ...||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA-----------------RLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc-----------------cccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCHHH
Confidence 567899999988653 3448999999999999999842 278999999987654
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.07 E-value=6.9e-11 Score=87.57 Aligned_cols=50 Identities=22% Similarity=0.675 Sum_probs=40.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~-CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
.+...|+||++.|.+. .+++ |||+|+..||..|+... ....||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p------------------~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA------------------VVIPCCGNSYCDECIRTALLES--DEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC------------------EECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc------------------eECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCcCC
Confidence 3567999999988753 4578 99999999999999743 3478999999973
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.06 E-value=3.6e-11 Score=90.56 Aligned_cols=51 Identities=24% Similarity=0.583 Sum_probs=41.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+. +.+++|||+||..||.+|+. ....||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-----------------MIIPQCSHNYCSLCIRKFLS----YKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSE-----------------EECTTTCCEEEHHHHHHHHT----TCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCc-----------------CEECCCCCHhhHHHHHHHHH----CCCCCCCCCCcCChhh
Confidence 456899999887663 23348999999999999998 4579999999987643
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7.2e-11 Score=81.92 Aligned_cols=45 Identities=29% Similarity=0.764 Sum_probs=36.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
+...|+||++.|.+. .+++|||+||..||++|+... .....||+|
T Consensus 19 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP------------------VTIDCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC------------------EECTTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred cCCCCCcCCchhCCe------------------EEeCCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 567899999887653 457999999999999999742 245689998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=7.2e-11 Score=90.36 Aligned_cols=50 Identities=16% Similarity=0.524 Sum_probs=41.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|+||++.|.+. +.+++|||+||..||.+|+. ....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA-----------------TTIIECLHSFCKTCIVRYLE----TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHT----SCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc-----------------CEeCCCCChhhHHHHHHHHH----hCCcCcCCCcccccc
Confidence 567899999887653 34459999999999999998 458999999998764
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=5.7e-11 Score=92.99 Aligned_cols=49 Identities=33% Similarity=0.569 Sum_probs=40.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
+...|+||++.|.+. .+++|||+||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP------------------ITTVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc------------------EEeeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence 456899999887753 45799999999999999972 44689999999976
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.2e-11 Score=79.73 Aligned_cols=45 Identities=31% Similarity=0.852 Sum_probs=36.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLC 222 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPIC 222 (236)
+...|+||++.|.+. .+++|||+||..||.+|+... .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP------------------VIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC------------------CCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCcc------------------EeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 567899999887653 347999999999999997632 246789998
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.01 E-value=7.6e-11 Score=96.45 Aligned_cols=50 Identities=26% Similarity=0.678 Sum_probs=41.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
+...|+||++.|.+. +.+++|||+||..||+.|+.. .+..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT-----------------MTTKECLHRFCADCIITALRS---GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE-----------------EEETTTCCEEEHHHHHHHHHT---TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc-----------------CEeCCCCChhHHHHHHHHHHh---CcCCCCCCCCcCCC
Confidence 466899999887763 344599999999999999983 36789999999854
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.3e-10 Score=89.73 Aligned_cols=57 Identities=21% Similarity=0.507 Sum_probs=45.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+.... ...+.+++|||+||..||++|+. ....||+||..+..++
T Consensus 71 ~~~~C~iC~~~~~~~~~~-----------~~~~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQN-----------GRLIVSTECGHVFCSQCLRDSLK----NANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHT-----------TCCEEEETTSBEEEHHHHHHHHH----HCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCcccccccc-----------CcceEeCCCCChhhHHHHHHHHH----cCCCCCCCCCcCChhc
Confidence 566899999999874210 11346789999999999999998 4579999999998765
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=4.7e-11 Score=92.18 Aligned_cols=52 Identities=25% Similarity=0.641 Sum_probs=42.2
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
+..+...|+||++.|.+. .+++|||+||..||.+|+.. ....||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP------------------VTLPCNHTLCKPCFQSTVEK---ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC------------------EECTTSCEECHHHHCCCCCT---TTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCce------------------eEcCCCCHHhHHHHHHHHhH---CcCCCCCCCcccCc
Confidence 344678999999887653 45799999999999999973 35789999999864
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.1e-10 Score=88.87 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=42.2
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
+...|+||++.|.+. .+++|||+||..||..|+... .....||+||..+...+.
T Consensus 20 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEP------------------VSTKCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSC------------------CBCTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCe------------------EECCCCCHHHHHHHHHHHHhC-CCCCCCcCCCCcCCHhhc
Confidence 356899999887653 336999999999999999843 133689999999887654
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.95 E-value=2.1e-10 Score=93.88 Aligned_cols=50 Identities=30% Similarity=0.526 Sum_probs=41.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|+||++.|.+. .+++|||+||..||..|+.. ....||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP------------------VTTECFHNVCKDCLQRSFKA---QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE------------------EECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC------------------EEcCCCCchhHHHHHHHHHh---CCCcCCCCCccCCCC
Confidence 456899999887663 44799999999999999983 346899999998876
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=2.5e-10 Score=88.16 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=41.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+. .+++|||+||..||.+|+.. ....||+||..+...+
T Consensus 22 ~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP------------------VETSCKHLFCRICILRCLKV---MGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHH---TCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc------------------EEcCCCCcccHHHHHHHHhH---CcCcCCCCCCCCCHhh
Confidence 466899999887653 34799999999999999984 2578999999987654
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.90 E-value=7.4e-10 Score=81.94 Aligned_cols=57 Identities=16% Similarity=0.326 Sum_probs=43.2
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
.+..+|+||++++...+. .+..++|||.|+..||.+|+.. ....||+||+.+..+..
T Consensus 9 ~~~~~CpICle~~~~~d~--------------~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI--------------NFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT--------------TCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc--------------cccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCCCch
Confidence 467799999998765432 1122359999999999999863 45789999999987664
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.90 E-value=3.3e-10 Score=88.20 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=41.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.+. .+++|||+||..||.+|+... ...||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe------------------EECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCHHh
Confidence 3567899999887653 447999999999999999742 248999999987654
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=9.8e-10 Score=81.29 Aligned_cols=53 Identities=25% Similarity=0.564 Sum_probs=41.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
....|+||.+.|.... .-..|+|.||.+||.+|+... .+..||+|+.+|....
T Consensus 14 ~i~~C~IC~~~i~~g~-----------------~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-----------------SCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSE-----------------ECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCC-----------------ccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCcCCCCC
Confidence 4568999998886431 223899999999999999732 3378999999987655
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.83 E-value=8.7e-10 Score=82.12 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=42.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|++. .+++|||+|...||++|+. .+..||+|+..+...+
T Consensus 13 ~~~~CpI~~~~m~dP------------------V~~~cGhtf~r~~I~~~l~----~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP------------------VRLPSGTVMDRSIILRHLL----NSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHH----HCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcCC------------------eECCCCCEECHHHHHHHHh----cCCCCCCCcCCCChHh
Confidence 677999999998875 5578999999999999998 3579999999987654
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.83 E-value=1.3e-09 Score=83.93 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=43.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.++ .+++|||+|...||++|+. .+..||+|+..+...+
T Consensus 28 ~~~~CpI~~~~m~dP------------------V~~~cGhtf~r~~I~~~l~----~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP------------------VRLPSGTIMDRSIILRHLL----NSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSSE------------------EEETTTEEEEHHHHHHHTT----SCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccCC------------------eECCCCCEEchHHHHHHHH----cCCCCCCCCCCCChhh
Confidence 677999999998875 4578999999999999998 4689999999987654
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=1.7e-09 Score=82.97 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=43.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-hHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|+++ .+++|| |+|...||++|+. .+..||+|+..+...+
T Consensus 21 ~~~~CpI~~~~m~dP------------------V~~~cG~htf~r~cI~~~l~----~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP------------------VVLPSSRVTVDRSTIARHLL----SDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSSE------------------EECTTTCCEEEHHHHHHHTT----TSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccCC------------------eECCCCCeEECHHHHHHHHH----hCCCCCCCCCCCChhh
Confidence 577999999998875 557999 9999999999998 3579999999987654
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=7e-10 Score=86.23 Aligned_cols=48 Identities=23% Similarity=0.675 Sum_probs=39.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.+. .++ +|||+||..||..|+. ..||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p------------------v~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILREP------------------VCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSSC------------------BCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhCc------------------cEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcccc
Confidence 567899999888653 335 8999999999999987 67999999986544
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2.1e-09 Score=76.07 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=39.5
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
|..+...|.||++.+.+. ++..++|||+ |+.+|+.+|+. .+..||+||..+..
T Consensus 4 ~~~~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNG----------------CIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSCSCE----------------EEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCCCCE----------------EEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchhc
Confidence 445777999998764432 1112399999 89999999997 45789999998754
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.72 E-value=1.8e-09 Score=87.53 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=39.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
+...|+||++.|.+. .+++|||+||..||.+|+.. ....||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~p------------------v~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP------------------FQAQCGHRYCSFCLASILSS---GPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHGGG---SCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc------------------EECCCCCccCHHHHHHHHhc---CCCCCCCCCCccc
Confidence 667899999888764 34799999999999999973 3468999999764
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=8e-10 Score=75.98 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=38.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.+. .+|+|||+|+..||.+| ...||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p------------------~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP------------------KLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC------------------SCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe------------------EEcCCCCcccHHHHccC-------CCCCCcCCcEeecCC
Confidence 3567899999887653 44799999999999884 357999999987654
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=8.6e-09 Score=77.80 Aligned_cols=53 Identities=19% Similarity=0.516 Sum_probs=40.8
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcC-CChHhhHHHHHHHHhcC--CCCCCCCcc--cccC-ccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLV-CGHVYHADCLEQRTSAE--DIRDPPCPL--CLGS-LMQ 228 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~-CGHvFH~eCLe~Wl~~~--~~~~p~CPI--CR~~-l~~ 228 (236)
.+...|+||++.|.++ .+++ |||+|...||++|+... ......||+ |+.. +..
T Consensus 5 ~~~~~CPI~~~~~~dP------------------V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP------------------VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSE------------------EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCC------------------EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3667899999998874 4464 99999999999999742 124579999 9866 543
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=7.3e-09 Score=73.05 Aligned_cols=52 Identities=19% Similarity=0.453 Sum_probs=39.1
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
......|.||++.+.+. ++..++|||+ |+.+|+.+|.. ....||+||..+..
T Consensus 4 ~~~~~~C~IC~~~~~~~----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG----------------NIIHGRTGHLVTCFHCARRLKK----AGASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCE----------------EEEETTEEEEEECHHHHHHHHH----TTCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCCe----------------EEEecCCCCHhHHHHHHHHHHH----hCCcCCCcCchhhc
Confidence 34567899998754432 1223499998 99999999987 34789999998754
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=3.1e-09 Score=76.87 Aligned_cols=45 Identities=24% Similarity=0.610 Sum_probs=36.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|.||++.+.+ +..++|||+ |+..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA------------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC------------------EEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC------------------EEEcCCCChhHHHHhhhcC--------ccCCCcCcCccCc
Confidence 45689999976544 256799999 999999999 4799999988654
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=6.2e-09 Score=89.38 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=42.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.++ .+++|||+|+..||+.|+... ...||+|+..+...+
T Consensus 206 ~~~~~c~i~~~~~~dP------------------v~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP------------------CITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE------------------EECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC------------------eECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCchhc
Confidence 3677999999998875 457999999999999999742 345999999987654
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.60 E-value=9.2e-09 Score=96.69 Aligned_cols=49 Identities=27% Similarity=0.652 Sum_probs=39.8
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
..|+||++.+.+ +++++|||+||..||.+|+.. ....||+||..+....
T Consensus 333 ~~C~ICle~~~~------------------pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAENDKD------------------VKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SBCTTTSSSBCC------------------EEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCEEE
T ss_pred CCCCccCcCCCC------------------eEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccCCce
Confidence 689999877643 256899999999999999873 3578999999887643
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=1.5e-08 Score=82.99 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=42.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|+||++.|.+. .+++|||+|+..||.+|+... ...||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA------------------VQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc------------------EECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchhh
Confidence 3677999999887663 347999999999999999732 348999999987654
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.1e-08 Score=72.39 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=35.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|.||++.+.+. .+++|||+ |+..|+..+ ..||+||..+....
T Consensus 24 ~~~~C~IC~~~~~~~------------------~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI------------------VFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCCB------------------CCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCCE------------------EEecCCCHHHHHHHhhCC--------CCCccCCceecCcE
Confidence 456799998775442 45799999 999999643 57999999987643
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=8.8e-08 Score=71.62 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=40.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc----CCCCCCCCcc--cccC--ccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA----EDIRDPPCPL--CLGS--LMQ 228 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~----~~~~~p~CPI--CR~~--l~~ 228 (236)
+..+|+||++.+.... .+.+.+|||.|+.+||.+|+.. .......||. |+.. +.+
T Consensus 4 ~~~~C~IC~~~~~~~~---------------~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQ---------------MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGG---------------EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCccccccc---------------ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4568999999877653 2344579999999999999852 1123468999 9988 544
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.42 E-value=6.5e-08 Score=68.33 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=37.7
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC--h---HhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG--H---VYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG--H---vFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
.+...|.||++...+ . .++||. | .||..||++|+... .+..||+|+..|..+
T Consensus 4 ~~~~~CrIC~~~~~~-----------------~-l~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 4 EDVPVCWICNEELGN-----------------E-RFRACGCTGELENVHRSCLSTWLTIS--RNTACQICGVVYNTR 60 (60)
T ss_dssp CSCCEETTTTEECSC-----------------C-CCCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCCBCCCC
T ss_pred CCCCEeEEeecCCCC-----------------c-eecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCCeeecC
Confidence 356689999865111 1 146765 4 99999999999743 457999999998653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.40 E-value=7.9e-08 Score=81.68 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=42.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+||++.|.++ .+++|||+|...||..|+... ..+||+|+..+...+
T Consensus 105 ~~f~CPI~~elm~DP------------------V~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMREP------------------CITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCSSE------------------EECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCCCC------------------eECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChhh
Confidence 778999999998874 456999999999999999742 237999999987654
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.6e-07 Score=84.54 Aligned_cols=54 Identities=19% Similarity=0.412 Sum_probs=43.5
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcc--cccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPL--CLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPI--CR~~l~~k~ 230 (236)
....+|+||++.|.++ |....|||+|+..||.+|+... ....||+ |+..+...+
T Consensus 179 ~~el~CPIcl~~f~DP-----------------Vts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEAP-----------------LISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSSE-----------------EEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccCC-----------------eeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchhh
Confidence 4667899999998774 4556999999999999999742 4468999 999876544
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=8.8e-08 Score=70.49 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=35.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|.||++.+.+ ++.++|||+ |+..|+..|. .||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN------------------STFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC------------------EEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc------------------EEEECCCCHHHHHHHHHhcC--------cCCCCCchhhCe
Confidence 35579999876433 366899999 9999999873 699999987654
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=3.7e-07 Score=65.42 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=36.4
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.+...|.||++.+.+ +++++|||+ |+..|+... ..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN------------------WVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSSCCC------------------CEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcCCCC------------------EEEECCCChhhhHHHHhcC--------CCCCCCCcchhceE
Confidence 356789999875332 477899999 999999842 47999999986543
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.15 E-value=4.2e-07 Score=64.15 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=40.3
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
..|+||++.+++. .++ +|||+|-..||++|+.. +..||+++..+..++.
T Consensus 4 ~~CpIs~~~m~dP------------------V~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRRP------------------VLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSSE------------------EEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCCC------------------EEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhhc
Confidence 4799999988763 345 89999999999999983 3579999999877654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.08 E-value=3.3e-07 Score=84.59 Aligned_cols=45 Identities=22% Similarity=0.611 Sum_probs=36.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChH-hhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHV-YHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHv-FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|.||++.+.+. ..++|||+ ||..|+..| ..||+||..+..+
T Consensus 294 ~~~~C~IC~~~~~~~------------------v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV------------------VFIPCGHLVVCQECAPSL--------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE------------------EEETTCCEEECTTTGGGC--------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce------------------EEcCCCChhHhHHHHhcC--------CcCCCCCCCccCe
Confidence 356899999876542 55799999 999999988 4699999988654
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.98 E-value=5.2e-07 Score=84.31 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=39.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCccee--EEcCCChHhhHHHHHHHHhcCCC-------CCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAV--AVLVCGHVYHADCLEQRTSAEDI-------RDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vV--avL~CGHvFH~eCLe~Wl~~~~~-------~~p~CPICR~~l~~k 229 (236)
....|+||...+.+.. .++.. .-..|||.||..||.+|+..... -...||+|+.++..+
T Consensus 307 ~~~ECaICys~~l~~g------------~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG------------EVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTC------------CCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCC------------CCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4568999998876521 11111 12589999999999999963211 115799999987643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.84 E-value=5.7e-06 Score=64.75 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=40.6
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
-|.+|.-++..- .+++||.|+|+.+|+..|..+ .+..||+|+..+...+.
T Consensus 3 fC~~C~~Pi~iy-----------------gRmIPCkHvFCydCa~~~~~~---~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVY-----------------GRMIPCKHVFCYDCAILHEKK---GDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEE-----------------EEEETTCCEEEHHHHHHHHHT---TCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEE-----------------eeeccccccHHHHHHHHHHhc---cCCCCcCcCCeeeeeEE
Confidence 588887776653 488999999999999999873 56789999999876553
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.28 E-value=0.00011 Score=64.35 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=40.6
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
....|.||.+.+..+. .--.|+|.||..|+..|+.. ..+..||.|+..|.....
T Consensus 179 ~i~~C~iC~~iv~~g~-----------------~C~~C~~~~H~~C~~~~~~~--~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ-----------------SCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCE-----------------ECSSSCCEECHHHHHHHTTT--CSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCc-----------------ccCccChHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCC
Confidence 3668999987766431 11249999999999999873 245799999999876653
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.49 E-value=0.079 Score=37.77 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.6
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcccccCccc
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~ 228 (236)
-.|..+||..||+..+......+-.||.|+....+
T Consensus 28 d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 28 THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 36899999999999887666677899999876544
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.32 E-value=0.025 Score=43.86 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=38.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCC-ChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVC-GHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVES 231 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~C-GHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~ 231 (236)
..-..|-.|- |+++. ++.| -|.++..||..++. ....||||.+.+..+..
T Consensus 26 ~G~~nCKsCW--f~~k~------------------LV~C~dHYLCl~CLtlmL~----~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 26 LGPQFCKSCW--FENKG------------------LVECNNHYLCLNCLTLLLS----VSNRCPICKMPLPTKLR 76 (99)
T ss_dssp SCCCCCCSSC--SCCSS------------------EEECSSCEEEHHHHHHTCS----SSSEETTTTEECCCCSC
T ss_pred cCcccChhhc--cccCC------------------eeeecchhhHHHHHHHHHh----hccCCcccCCcCCccee
Confidence 3556799994 44432 2457 59999999999998 55789999999988764
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.30 E-value=0.049 Score=40.36 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=26.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH-HH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ-RT 209 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~-Wl 209 (236)
+...|.||.+.+.... +..-+.|+|.|+..||+. |.
T Consensus 2 ee~~C~~C~~~~~~~a---------------v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA---------------VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC---------------CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc---------------eEECCcCChHHhHHHCHHHhc
Confidence 4568999986543321 223389999999999998 54
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.56 E-value=0.047 Score=39.08 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=37.7
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
+...|.||.+...... .|.-=.|.-.||..||..-+......+..||.|+..+..+
T Consensus 17 ~~~~C~~C~~~~~~~~---------------mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDDGSP---------------MIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCSSCC---------------EEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCCCCC---------------EEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4567999986632211 2233368899999999876554434678899998876544
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.12 E-value=0.11 Score=34.37 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=24.9
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
-.|.-.||..||..=+.+....+-.||.|+..
T Consensus 19 d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 19 DECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 37889999999987665555567889999753
No 78
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.55 E-value=0.12 Score=39.21 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=42.1
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCCCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESSGVQ 235 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~~~q 235 (236)
....|.||.+. .. .+---.|--+||..||..-+......+-.||.|...-..++..++|
T Consensus 24 n~~~C~vC~~~---g~---------------LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke~~~~l 82 (88)
T 1fp0_A 24 SATICRVCQKP---GD---------------LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVDL 82 (88)
T ss_dssp SSSCCSSSCSS---SC---------------CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCCSSTTS
T ss_pred CCCcCcCcCCC---CC---------------EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccchhhccc
Confidence 45689999753 11 1122367889999999887766666778999999887777665554
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.75 E-value=0.28 Score=34.06 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=35.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
.....|.||.+. .. .+.--.|--.||..||..-+......+-.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~---------------ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE---------------IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS---------------EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc---------------EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999752 11 222236888999999998766555677899999764
No 80
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.73 E-value=0.067 Score=40.30 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=37.6
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
...+...|.||.+.-.... .+.-=.|.-.||..||..=+......+-.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~---------------ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDK---------------LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGG---------------CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCC---------------EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456778999986532221 122236889999999986665555567889999764
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.32 E-value=0.089 Score=37.08 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=38.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCCCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVESS 232 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~~~ 232 (236)
....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|...-..+...
T Consensus 7 ~~~~C~vC~~~---g~---------------ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~~~ 62 (66)
T 1xwh_A 7 NEDECAVCRDG---GE---------------LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQP 62 (66)
T ss_dssp CCCSBSSSSCC---SS---------------CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCCCC
T ss_pred CCCCCccCCCC---CC---------------EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccCcc
Confidence 56689999753 11 1222368889999999976655555678899998765555433
No 82
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.54 E-value=0.043 Score=37.90 Aligned_cols=55 Identities=25% Similarity=0.532 Sum_probs=38.5
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
.....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|......++
T Consensus 3 ~~~~~C~vC~~~---g~---------------ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~ 57 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ---------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKE 57 (60)
T ss_dssp CCCSSCTTTCCC---SS---------------CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTT
T ss_pred CCCCCCcCCCCC---Cc---------------EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchh
Confidence 356689999753 11 22333788999999999766655556788999987665544
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.63 E-value=0.096 Score=35.67 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=35.2
Q ss_pred CCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 157 DTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 157 ~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
+.....|.||.+. .. .+.--.|.-.||..||..-+......+-.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~---------------ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ---------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC---------------CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce---------------EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999753 11 22333788999999999766655556778999964
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=82.16 E-value=0.12 Score=35.86 Aligned_cols=55 Identities=18% Similarity=0.482 Sum_probs=36.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC-CCCCCCcccccCc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSL 226 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~-~~~p~CPICR~~l 226 (236)
.+...|+||.+++.+... .|.--.|..-||..|+.--....+ .....||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~--------------mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEF--------------WICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSC--------------EEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCC--------------EEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 356689999887643221 234447888999999965433221 2568899998753
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=81.71 E-value=0.89 Score=34.57 Aligned_cols=14 Identities=43% Similarity=1.056 Sum_probs=13.1
Q ss_pred CCChHhhHHHHHHH
Q 026603 195 VCGHVYHADCLEQR 208 (236)
Q Consensus 195 ~CGHvFH~eCLe~W 208 (236)
.|+-|||..||.+.
T Consensus 34 vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 34 VCTRVFHDGCLRRM 47 (89)
T ss_dssp SSSSCCCHHHHHHH
T ss_pred cccccccHhhcccc
Confidence 59999999999997
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.45 E-value=0.23 Score=37.83 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=32.0
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCL 223 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR 223 (236)
..+..|.||.+.-... ..+.=-.|+..||..||...+.......-.||-|+
T Consensus 5 ~~~~~C~~C~~~g~~~---------------~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL---------------DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTT---------------TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCc---------------CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3667899997541110 01233479999999999987654333455566553
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=81.22 E-value=0.21 Score=34.73 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=25.5
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
.|.-.||..||..-+......+-.||.|+...
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 58889999999976665555678899998653
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.19 E-value=0.66 Score=33.49 Aligned_cols=59 Identities=19% Similarity=0.450 Sum_probs=37.0
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-CCCCCCCcccccCccc
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~-~~~~p~CPICR~~l~~ 228 (236)
.++.+...| ||.+++.... ..|.--.|.--||..|+.--.... ......||.|+....+
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~--------------~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNH--------------FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSS--------------CEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccCCccEE-EcCCccCCCC--------------ceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 344455567 9988753221 134445799899999996433221 1256899999977543
No 89
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.95 E-value=1 Score=34.03 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=23.6
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 196 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 196 CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
|. .-||..|+. +......+..||.|+....++
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k~ 89 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 89 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSSS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCCcC
Confidence 66 689999998 444445678999998765443
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.18 E-value=0.31 Score=40.21 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=26.8
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
.|.-+||..||..-+......+-.||.|+..-.
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 588899999998887755556788999987654
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.76 E-value=0.35 Score=40.70 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccCc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSL 226 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l 226 (236)
.|.-+||..||...+......+-.||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 68889999999988776656778999998764
No 92
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=76.55 E-value=0.93 Score=32.50 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=23.9
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 196 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 196 CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
|. .-||..|+. +......+..||.|+..-..+
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 69 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSSC
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccccc
Confidence 66 689999998 554445678999998765443
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.20 E-value=2.8 Score=32.10 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=39.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
..++|.||.+.+.... .++ ..||.-.|+--.+..|.+--..+ .+..||-|+..|.
T Consensus 15 ~~qiCqiCGD~VG~~~----------~Ge-~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTV----------EGD-LFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCS----------SSS-BCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred CCCccccccCccccCC----------CCC-EEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 5579999987754321 112 24566778888899999987764 5678999999986
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.86 E-value=0.34 Score=36.90 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=26.7
Q ss_pred eEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 191 VAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 191 VavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
+.--.|...||..||..-+......+-.||.|..-
T Consensus 70 l~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 70 LVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp EECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred eECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 34447899999999997666555567889999764
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.73 E-value=0.25 Score=36.79 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=27.3
Q ss_pred CCChHhhHHHHHHHHhc----CCCCCCCCcccccCcccCC
Q 026603 195 VCGHVYHADCLEQRTSA----EDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~----~~~~~p~CPICR~~l~~k~ 230 (236)
.|...||..|+..-+.. ....+-.|+.|+.....+.
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 68999999999976642 4457789999987655443
No 96
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=69.43 E-value=0.86 Score=38.12 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
.|--+||..||..=+......+-.||.|+..-.
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 688899999998766655557788999987644
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.41 E-value=3 Score=31.81 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=29.9
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHH---HHhcCCCCCCCCcccc
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQ---RTSAEDIRDPPCPLCL 223 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~---Wl~~~~~~~p~CPICR 223 (236)
..+|.+|+..=.. + ..+.....+.=-.|+..||..||.. ........+-.||-|+
T Consensus 5 ~~~C~~C~~~~~~--------~-~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQ--------N-REKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTC--------C-TTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhh--------C-cCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 3479999754111 0 0111122345568999999999953 2221122455666664
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.16 E-value=0.32 Score=33.70 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=36.5
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc--C-CCCCCCCcccccCccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA--E-DIRDPPCPLCLGSLMQ 228 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~--~-~~~~p~CPICR~~l~~ 228 (236)
.....|.||.+...+.. ...+.--.|.-.||..|+..-+.. . ...+-.||.|......
T Consensus 4 ~~~~~C~vC~~~~~~~~-------------~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAP-------------NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTT-------------BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCC-------------CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 35678999986532211 112233378889999999875432 1 3366889999876443
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.30 E-value=0.85 Score=32.54 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=33.5
Q ss_pred ccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-----CCCCCCCcccccCcccC
Q 026603 160 KIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-----DIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 160 ~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~-----~~~~p~CPICR~~l~~k 229 (236)
...| ||.+...... .|.--.|.--||..|+.--.... ...+..||.|+....++
T Consensus 16 ~~~C-~C~~~~~~~~---------------MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF---------------MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCCS-TTCCCCCSSC---------------EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCEE-ECCCccCCCC---------------EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 4456 8987654221 23444799899999985322110 12568999998765543
No 100
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.62 E-value=0.24 Score=38.28 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=28.0
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
-.|...||..||..-+......+-.||.|...+..+
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 378999999999976665555678899998776554
No 101
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=67.27 E-value=0.79 Score=32.70 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=24.3
Q ss_pred CCChHhhHHHHHHHHhcCCCC-CCCCcccccC
Q 026603 195 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLGS 225 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~-~p~CPICR~~ 225 (236)
.|.-.||..||..-+...... +-.||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 688999999999766555445 7889999754
No 102
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.71 E-value=0.68 Score=33.86 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCChHhhHHHHHHHHhcCCCCC-CCCccccc
Q 026603 195 VCGHVYHADCLEQRTSAEDIRD-PPCPLCLG 224 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~-p~CPICR~ 224 (236)
.|.-.||..||..-|......+ -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 6888999999998776555555 78999975
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.03 E-value=0.88 Score=34.88 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=25.3
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
-.|...||..||..-+......+-.||.|+.
T Consensus 81 d~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 81 DSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3689999999998877666566788999975
No 104
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.19 E-value=0.73 Score=33.62 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=23.9
Q ss_pred CCChHhhHHHHHHHHhcCCCC-CCCCccccc
Q 026603 195 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLG 224 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~-~p~CPICR~ 224 (236)
.|...||..||..-|...... +-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 788999999999766555445 678999975
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.39 E-value=1 Score=33.97 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=22.1
Q ss_pred cCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 194 LVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 194 L~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
=.|.-.||..|+..-+.... .+..||.|+..
T Consensus 46 d~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 46 DKCSVWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp TTTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred CCCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 47899999999975433222 35899999743
No 106
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=62.54 E-value=0.5 Score=39.85 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=35.1
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh---cC----CCCCCCCcccccCcc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS---AE----DIRDPPCPLCLGSLM 227 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~---~~----~~~~p~CPICR~~l~ 227 (236)
..|+||.+.+...+. +...|.--.|..-||..|+.---. .. +.....||.|+..-+
T Consensus 3 ~~CpiC~k~Y~~~~~-----------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDY-----------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCT-----------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCccc-----------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999998877542 011234347899999999843210 00 012578999988654
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=60.96 E-value=1.2 Score=36.11 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=32.8
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhc-CCCCCCCCcccccC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSA-EDIRDPPCPLCLGS 225 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~-~~~~~p~CPICR~~ 225 (236)
+...| ||.....+... .|.-=.|.-.||..|+.--... .......||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~--------------mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKF--------------YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSC--------------EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCC--------------EeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45578 99876532211 2333478999999999543221 12356889999864
No 108
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.62 E-value=2.3 Score=31.57 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=35.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|.||.+.-.... ...+.--.|.-.||..|+..-+ ....+-.||.|......+.
T Consensus 24 ~~~~C~vC~~~~s~~~-------------~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 24 EDAVCSICMDGESQNS-------------NVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCSSCCSSSSCSE-------------EEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSCC
T ss_pred CCCcCCcCCCCCCCCC-------------CCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchhh
Confidence 5678999975421110 0112222678899999998643 2336788999987655443
No 109
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.18 E-value=1.1 Score=31.72 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=34.4
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
+...| ||......... .|.--.|.--||..|+.--.......+..||.|+....
T Consensus 15 ~~~~C-~C~~~~~~g~~--------------mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGER--------------MLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCCSSC--------------EEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCCCCc--------------EEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 45568 79876433211 23444688889999987543323346789999986543
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=57.29 E-value=3.1 Score=29.89 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCChHhhHHHHHHHHhc-----CCCCCCCCcccccCcc
Q 026603 195 VCGHVYHADCLEQRTSA-----EDIRDPPCPLCLGSLM 227 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~-----~~~~~p~CPICR~~l~ 227 (236)
.|..-||..|+.--... .......||.|+..-.
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 68889999999643221 1124689999987543
No 111
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=56.71 E-value=0.59 Score=31.28 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=30.2
Q ss_pred ccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHhcCCCCCCCCcccc
Q 026603 162 VCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTSAEDIRDPPCPLCL 223 (236)
Q Consensus 162 ~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~~~~~~~p~CPICR 223 (236)
.|.||.+++.+... .|.-- .|.-=||..|+.--.......+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~--------------mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVD--------------WVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCC--------------EEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCc--------------EEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 58899887644321 23444 58888999998654322112568899985
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=55.31 E-value=3.2 Score=32.10 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=20.8
Q ss_pred CCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 195 VCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
.|--+||..||. +......+-.||-|.-.
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 477899999998 55444566778876543
No 113
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=54.50 E-value=2.4 Score=26.71 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=10.2
Q ss_pred CCCCcccccCccc
Q 026603 216 DPPCPLCLGSLMQ 228 (236)
Q Consensus 216 ~p~CPICR~~l~~ 228 (236)
.+.||+|++.+..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 3789999988753
No 114
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=54.08 E-value=6.3 Score=40.98 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=40.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCC-hHhhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCG-HVYHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+...|+|-.+.+.++ .+++-| +.|-..+|++|+. .+.+||+=|.++...+
T Consensus 890 ~~F~cPIs~~lM~DP------------------VilpsG~~TydR~~I~~wl~----~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP------------------VILPASKMNIDRSTIKAHLL----SDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSSE------------------EECTTTCCEEEHHHHHHHHT----TCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhCC------------------eEcCCCCEEECHHHHHHHHh----cCCCCCCCCCCCCccc
Confidence 677899998877764 567888 5899999999998 4679999888876544
No 115
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=53.39 E-value=8.1 Score=36.02 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=27.5
Q ss_pred eeEEcCCChH--hhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 190 AVAVLVCGHV--YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 190 vVavL~CGHv--FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+++-..|.|+ |=++=+.++... ...-.||+|.+.+...+
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~--~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQ--IPTWQCPVCQIDIALEN 302 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHH--SCCCBCTTTCCBCCGGG
T ss_pred cCcCCcCCCcceECHHHHHHHhhc--CCceeCCCCCcccCHHH
Confidence 4677899998 666655555443 35678999999876544
No 116
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=53.31 E-value=11 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.469 Sum_probs=23.5
Q ss_pred CCChHhhHHHHHHHHh-----c--CCCCCCCCcccccC
Q 026603 195 VCGHVYHADCLEQRTS-----A--EDIRDPPCPLCLGS 225 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~-----~--~~~~~p~CPICR~~ 225 (236)
.|--+||..||..-+. + ....+-.||+|+..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 7888999999997653 1 23467889999743
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.43 E-value=2 Score=37.52 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=21.5
Q ss_pred CCChHhhHHHHHHHHhcCCCC-CCCCcccccC
Q 026603 195 VCGHVYHADCLEQRTSAEDIR-DPPCPLCLGS 225 (236)
Q Consensus 195 ~CGHvFH~eCLe~Wl~~~~~~-~p~CPICR~~ 225 (236)
.|.-.||..||..=+...... +-.||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 688999999999766655445 6789999753
No 118
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.12 E-value=11 Score=35.05 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=28.1
Q ss_pred eeEEcCCChH--hhHHHHHHHHhcCCCCCCCCcccccCcccCC
Q 026603 190 AVAVLVCGHV--YHADCLEQRTSAEDIRDPPCPLCLGSLMQVE 230 (236)
Q Consensus 190 vVavL~CGHv--FH~eCLe~Wl~~~~~~~p~CPICR~~l~~k~ 230 (236)
+++-..|.|+ |-++=..++.... ..-.||+|.+.+...+
T Consensus 228 P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 228 PCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAAYES 268 (360)
T ss_dssp EEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCCGGG
T ss_pred CCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccCHHH
Confidence 4577899998 7666666655433 5678999999886544
No 119
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.67 E-value=6.4 Score=27.60 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=31.6
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHh------cCCCCCCCCcccc
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTS------AEDIRDPPCPLCL 223 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~------~~~~~~p~CPICR 223 (236)
.....|++|.+++..... .|.-- .|.--||..|+.--.. ........||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~--------------mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQD--------------AILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSC--------------EEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCC--------------eEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 356689999988765432 23334 7888899999843221 1122357799886
No 120
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=45.63 E-value=1.7 Score=29.91 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=20.9
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 196 CG-HVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 196 CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
|. ..||..|+. +......+..||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 5545457789999975
No 121
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=45.58 E-value=14 Score=27.99 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=34.1
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC-CCCCCCCc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE-DIRDPPCP 220 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~-~~~~p~CP 220 (236)
+......|.||++-|++...+. ---.=+|-|+-.|-...+... ...+..||
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQ--------------CPsv~~HkFCFpCsr~sIk~q~~~~EvyCP 62 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQ--------------CPSVPSHKFCFPCSRESIKAQGATGEVYCP 62 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEE--------------CSSCSSCEECHHHHHHHHHHHHSSSCCCCT
T ss_pred CCCCeeEeecchhhhccCceee--------------CCCccCCeeeccccHHHHHhcCCCCcEECC
Confidence 3445678999999999886531 111247999999999987532 22445555
No 122
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=42.57 E-value=9.4 Score=27.16 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=33.1
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
.....|.||.+.-... +...+.-=.|.-.||..|+..-. ....+-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~-------------~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQN-------------SNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCS-------------SSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCC-------------CCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 3677899997542111 01112223788899999998542 23467889999753
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=42.46 E-value=2.6 Score=29.80 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=32.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
+...| ||.+...... .|.--.|.--||..|+.--.... .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~---------------MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRP---------------MIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCC---------------EEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCC---------------EEECCCCCccccccccCcCcccC-CCcEECCCCCC
Confidence 45568 9987644221 34445699999999997543222 25688999975
No 124
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.05 E-value=2.2 Score=29.35 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=20.8
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 196 CG-HVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 196 CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
|. .-||..|+. +......+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 689999999 5444446789999975
No 125
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.86 E-value=5.4 Score=36.04 Aligned_cols=58 Identities=21% Similarity=0.400 Sum_probs=0.0
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcC---CCCCCCCcccccCcc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAE---DIRDPPCPLCLGSLM 227 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~---~~~~p~CPICR~~l~ 227 (236)
|+.+...|.+|...|..-.- .-.-..||++||..|...++... ....-.|-.|-..+.
T Consensus 371 ~~~~~~~c~~c~~~f~~~~r--------------~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 371 PVTHVMMCMNCGCDFSLTLR--------------RHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CcccCCcCCCcCCCCCCcch--------------hhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 44456789999988753210 01224799999999998876421 112345777766553
No 126
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.39 E-value=12 Score=29.05 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=18.8
Q ss_pred EcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcccC
Q 026603 193 VLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLMQV 229 (236)
Q Consensus 193 vL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~~k 229 (236)
-..||++| . . .-.....||.|+.+....
T Consensus 70 C~~CG~~F----~----~-~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 70 CRKCGFVF----K----A-EINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp BTTTCCBC----C----C-CSSCCSSCSSSCCCCBCC
T ss_pred hhhCcCee----c----c-cCCCCCCCcCCCCCccCC
Confidence 36899999 1 1 112447899999886554
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.35 E-value=0.73 Score=35.34 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=33.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEc-CCChHhhHHHHHHHHh------cCCCCCCCCcccccCcc
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVL-VCGHVYHADCLEQRTS------AEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL-~CGHvFH~eCLe~Wl~------~~~~~~p~CPICR~~l~ 227 (236)
..|+||.+++..... .+.-= .|.--||.+|+.--.. .....+..||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~--------------mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQD--------------AILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSC--------------EEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCC--------------EEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 479999988754321 11211 5788899999853221 01225688999987644
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.32 E-value=11 Score=25.76 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=19.3
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 205 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCL 205 (236)
....|..|.+.+.... .+..-+.+||.+|+
T Consensus 8 ~~~~C~~C~~~I~~~~-----------------~v~a~~~~~H~~CF 37 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE-----------------KVSSLGKDWHKFCL 37 (76)
T ss_dssp CCCBCTTTCCBCCTTT-----------------EEEETTEEEETTTC
T ss_pred CCCCCcCCCCEeECCe-----------------EEEECCeEeeCCCC
Confidence 3457999988766432 12245788888773
No 129
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.03 E-value=23 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCChHhhHHHHHHH-----HhcC--CCCCCCCcccccC
Q 026603 195 VCGHVYHADCLEQR-----TSAE--DIRDPPCPLCLGS 225 (236)
Q Consensus 195 ~CGHvFH~eCLe~W-----l~~~--~~~~p~CPICR~~ 225 (236)
.|-.+||..||..- +.++ ...+-.|++|+..
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 68899999999975 2222 3466789999653
No 130
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=37.61 E-value=2.9 Score=29.09 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=21.1
Q ss_pred CC-hHhhHHHHHHHHhcCCCCCCCCcccccC
Q 026603 196 CG-HVYHADCLEQRTSAEDIRDPPCPLCLGS 225 (236)
Q Consensus 196 CG-HvFH~eCLe~Wl~~~~~~~p~CPICR~~ 225 (236)
|. .-||..|+. +......+..||.|+..
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 789999998 44444567899999753
No 131
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.75 E-value=9.8 Score=28.01 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=28.0
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~ 210 (236)
++.+...|.+|...|..-. ..-.-..||++|+..|...++.
T Consensus 16 ~d~~~~~C~~C~~~F~~~~--------------RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTK--------------RRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSS--------------CCEECTTTCCEECGGGSCEEEE
T ss_pred ccccCCcCcCCCCcccchh--------------hCccccCCCCEECCcccCCeee
Confidence 3445668999998875321 0113358999999999988754
No 132
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.53 E-value=6.7 Score=30.89 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCccccc
Q 026603 154 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLG 224 (236)
Q Consensus 154 ~Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~ 224 (236)
++|+.+...|.+|...|..-.- .-.-..||.+|+..|...... ..-.|-.|-.
T Consensus 13 ~~Pd~~~~~C~~C~~~Fs~~~R--------------kHHCR~CG~ifC~~Cs~~~~~----~vRVC~~C~~ 65 (120)
T 1y02_A 13 PSPTGLEPSCKSCGAHFANTAR--------------KQTCLDCKKNFCMTCSSQVGN----GPRLCLLCQR 65 (120)
T ss_dssp -------CCCTTTCCCCSSGGG--------------CEECTTTCCEECGGGEEC--------CCEEHHHHH
T ss_pred CcCccccCcccCcCCccccccc--------------cccCCCCCCeeCHHHhCCCCC----CceECHHHHH
Confidence 3467777899999998753210 113358999999999877655 2345666643
No 133
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.03 E-value=18 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.649 Sum_probs=19.5
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 205 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCL 205 (236)
....|..|.+.+.... .+..-+.+||.+|+
T Consensus 14 ~~~~C~~C~~~I~~~e-----------------~v~a~~~~wH~~CF 43 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE-----------------RLCVNGHFFHRSCF 43 (82)
T ss_dssp SSCBCSSSCCBCCTTT-----------------BCCBTTBCCBTTTC
T ss_pred CCCCCcccCCCcccce-----------------EEEECCCeeCCCcC
Confidence 4567999988765432 11235778888874
No 134
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.86 E-value=8.7 Score=27.84 Aligned_cols=58 Identities=21% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCC----CCCCCcccccCcc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDI----RDPPCPLCLGSLM 227 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~----~~p~CPICR~~l~ 227 (236)
|+.+...|.+|...|..-.- .-.=-.||.+|+..|.......... ..-.|-.|-..+.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVR--------------RHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSC--------------CEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred cCCCCCCCcCcCCccccchh--------------cccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 44566789999998764210 1122479999999998876432111 1134666655443
No 135
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.49 E-value=11 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.535 Sum_probs=18.0
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 205 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCL 205 (236)
....|..|.+.+... .+..-|..||.+|+
T Consensus 24 ~~~~C~~C~~~I~~~------------------~v~a~~~~~H~~CF 52 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP------------------FLVALGKSWHPEEF 52 (90)
T ss_dssp CCCBBSSSCCBCCSC------------------EEEETTEEECTTTC
T ss_pred CCCCCccCCCEecce------------------EEEECCccccccCC
Confidence 445799998776321 22345778887764
No 136
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.77 E-value=9.4 Score=27.54 Aligned_cols=59 Identities=20% Similarity=0.395 Sum_probs=35.1
Q ss_pred CCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCC--CCCCCCcccccCccc
Q 026603 156 PDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAED--IRDPPCPLCLGSLMQ 228 (236)
Q Consensus 156 p~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~--~~~p~CPICR~~l~~ 228 (236)
|+.+...|.+|...|..-.- .-.=-.||.+|+..|....+.... ...-.|-.|-..+..
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRR--------------KHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBC--------------CEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred cCccCCcccCcCCcccCccc--------------cccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 44456689999998763210 112247999999999987643211 112346666555443
No 137
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.69 E-value=8.1 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=20.8
Q ss_pred hHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 198 HVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 198 HvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
.-||..|+. +......+..||.|+....
T Consensus 30 ~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVG--LTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHT--CSSCCSSCCCCHHHHHHHH
T ss_pred cCCcccccc--cCcCCCCCEECCCCCcccc
Confidence 689999998 3434456788999987653
No 138
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=31.63 E-value=3 Score=31.38 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=19.8
Q ss_pred hHhhHHHHHHHHhcCCCCCCCCcc-cccCc
Q 026603 198 HVYHADCLEQRTSAEDIRDPPCPL-CLGSL 226 (236)
Q Consensus 198 HvFH~eCLe~Wl~~~~~~~p~CPI-CR~~l 226 (236)
--||..|+. |......+..||. |+..-
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcchh
Confidence 689999997 4434446789999 98543
No 139
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.25 E-value=8.6 Score=30.06 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 026603 155 SPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 209 (236)
Q Consensus 155 Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl 209 (236)
-|+.+...|.+|...|..-.- .-.--.||++|+..|.....
T Consensus 64 ~~d~~~~~C~~C~~~Fs~~~R--------------rHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 64 AEDNEVQNCMACGKGFSVTVR--------------RHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CCGGGCCBCTTTCCBCCSSSC--------------CEECTTTCCEECGGGSCEEE
T ss_pred ccCCCCCCCcCcCCccccccc--------------cccCCCCCeEEChHHhCCcc
Confidence 344456689999988763210 11224899999999987764
No 140
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.65 E-value=13 Score=26.89 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=28.6
Q ss_pred CCCCCcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHh
Q 026603 154 ASPDTVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTS 210 (236)
Q Consensus 154 ~Sp~~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~ 210 (236)
+-|+.+...|.+|...|..-. ..-.=-.||.+|+..|....+.
T Consensus 8 W~pd~~~~~C~~C~~~F~~~~--------------RrHHCR~CG~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 8 RYPTNNFGNCTGCSATFSVLK--------------KRRSCSNCGNSFCSRCCSFKVP 50 (84)
T ss_dssp SCSCCCCSSCSSSCCCCCSSS--------------CCEECSSSCCEECTTTSCEEEC
T ss_pred cccCCCCCcCcCcCCccccch--------------hhhhhcCCCcEEChhhcCCcee
Confidence 345556678999998875321 0112247999999999876543
No 141
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.40 E-value=11 Score=26.11 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=9.3
Q ss_pred cccccccccchhhh
Q 026603 159 VKIVCGICQKLLRR 172 (236)
Q Consensus 159 d~~~C~IC~e~L~~ 172 (236)
....|..|.+.+..
T Consensus 14 ~~~~C~~C~~~I~~ 27 (79)
T 1x62_A 14 KLPMCDKCGTGIVG 27 (79)
T ss_dssp CCCCCSSSCCCCCS
T ss_pred CCCccccCCCCccC
Confidence 45578888766543
No 142
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.14 E-value=13 Score=27.31 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=24.9
Q ss_pred CcccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 026603 158 TVKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 209 (236)
Q Consensus 158 ~d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl 209 (236)
.+...|.+|...|..-.- .-.--.||.+|+..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~R--------------rHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKK--------------EYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCCSBCTTTCCBCCSSSC--------------EEECSSSCCEEETTTSCEEE
T ss_pred CcCCCCcCcCCcccCccc--------------cccCCCCCCEEChhHcCCce
Confidence 355689999988753210 11224789999988887654
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.02 E-value=9.9 Score=22.69 Aligned_cols=28 Identities=21% Similarity=0.511 Sum_probs=17.8
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 205 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCL 205 (236)
..|+.|.+..-... .+..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~~E-----------------k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTE-----------------KVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGG-----------------CCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecce-----------------eEEECCeEecccCC
Confidence 47999987654321 22345788888873
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.50 E-value=26 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=17.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHH
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCL 205 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCL 205 (236)
....|..|.+.+... + +..-+.+||.+|+
T Consensus 24 ~~~~C~~C~~~I~~~----------------~--~~a~~~~~H~~CF 52 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA----------------V--VKARDKYRHPECF 52 (89)
T ss_dssp SCCBCTTTCCBCCSC----------------C--EESSSCEECTTTC
T ss_pred cCCCcccCCCEeccc----------------E--EEECCceECccCC
Confidence 345799997765531 1 2346678887773
No 145
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=17 Score=24.87 Aligned_cols=11 Identities=27% Similarity=0.476 Sum_probs=6.7
Q ss_pred ccccccchhhh
Q 026603 162 VCGICQKLLRR 172 (236)
Q Consensus 162 ~C~IC~e~L~~ 172 (236)
.|..|.+.+..
T Consensus 2 ~C~~C~~~I~~ 12 (76)
T 1iml_A 2 KCPKCDKEVYF 12 (76)
T ss_dssp BCTTTSSBCCG
T ss_pred cCCCCCCEEEC
Confidence 46777666553
No 146
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.57 E-value=22 Score=27.21 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=26.9
Q ss_pred cccccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHHhcCCCCCCCCcccccCcc
Q 026603 159 VKIVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLM 227 (236)
Q Consensus 159 d~~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl~~~~~~~p~CPICR~~l~ 227 (236)
....|.-|.+.+.... .+..-|..||.+| +.|-.|...|.
T Consensus 60 ~~~~C~~C~~~I~~~~-----------------~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRF-----------------LLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSS-----------------EEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcE-----------------EEEeCCcEEcccc------------cCcCcCCCccc
Confidence 4568999987765431 2334688899887 34777777664
No 147
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.62 E-value=19 Score=21.58 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=8.7
Q ss_pred CCCCcccccCc
Q 026603 216 DPPCPLCLGSL 226 (236)
Q Consensus 216 ~p~CPICR~~l 226 (236)
+..||+|+...
T Consensus 3 k~~CpvCk~q~ 13 (28)
T 2jvx_A 3 DFCCPKCQYQA 13 (28)
T ss_dssp CEECTTSSCEE
T ss_pred cccCccccccC
Confidence 46899998764
No 148
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=21.10 E-value=10 Score=36.24 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=24.0
Q ss_pred eEEcCCChHhhHHHHHHHHhcCC-CCCCCCcccccCcc
Q 026603 191 VAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSLM 227 (236)
Q Consensus 191 VavL~CGHvFH~eCLe~Wl~~~~-~~~p~CPICR~~l~ 227 (236)
|.--.|.-=||..|+.---.... .....||.|+....
T Consensus 53 IqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 53 IECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp EEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred EEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 34446999999999954332211 14588999986543
No 149
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.41 E-value=10 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=24.9
Q ss_pred eEEcCCChHhhHHHHHHHHhcCC-CCCCCCcccccCccc
Q 026603 191 VAVLVCGHVYHADCLEQRTSAED-IRDPPCPLCLGSLMQ 228 (236)
Q Consensus 191 VavL~CGHvFH~eCLe~Wl~~~~-~~~p~CPICR~~l~~ 228 (236)
|.--.|.--||..|+.--..... .....||.|+....+
T Consensus 26 I~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 26 IECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp EECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred EEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 34446898999999964432211 145889999876443
No 150
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.04 E-value=22 Score=23.78 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=8.2
Q ss_pred ccccccccchhh
Q 026603 160 KIVCGICQKLLR 171 (236)
Q Consensus 160 ~~~C~IC~e~L~ 171 (236)
...|..|.+.+.
T Consensus 5 ~~~C~~C~~~I~ 16 (70)
T 2d8x_A 5 SSGCHQCGEFII 16 (70)
T ss_dssp SSBCSSSCCBCC
T ss_pred CCcCccCCCEec
Confidence 346888876654
No 151
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.01 E-value=21 Score=25.03 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.0
Q ss_pred cccccccchhhhcccccCCCCCCCCCCcceeEEcCCChHhhHHHHHHHH
Q 026603 161 IVCGICQKLLRRKSHLLGMGSTIPSGEQHAVAVLVCGHVYHADCLEQRT 209 (236)
Q Consensus 161 ~~C~IC~e~L~~~~~~~~~~~~~~~~dl~vVavL~CGHvFH~eCLe~Wl 209 (236)
..|.+|...|..-.- .-.=-.||.+|+..|....+
T Consensus 12 ~~C~~C~~~F~~~~R--------------rHHCR~CG~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 12 DACMICSKKFSLLNR--------------KHHCRSCGGVFCQEHSSNSI 46 (73)
T ss_dssp SBCTTTCCBCBTTBC--------------CEECTTTCCEECGGGSCEEE
T ss_pred CcccCCCCccCCccc--------------cccCCCCCEEEcccccCCeE
Confidence 479999988763210 11224799999999987654
No 152
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.01 E-value=28 Score=24.79 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=10.6
Q ss_pred CCCcccccCcccCC
Q 026603 217 PPCPLCLGSLMQVE 230 (236)
Q Consensus 217 p~CPICR~~l~~k~ 230 (236)
..||+|+..+....
T Consensus 9 L~CP~ck~~L~~~~ 22 (69)
T 2pk7_A 9 LACPICKGPLKLSA 22 (69)
T ss_dssp CCCTTTCCCCEECT
T ss_pred eeCCCCCCcCeEeC
Confidence 67999988876544
Done!