BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026604
MGLIGHLFPPPDFSLIKSSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALT
ATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPK
SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVL
EFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME

High Scoring Gene Products

Symbol, full name Information P value
AT4G24930 protein from Arabidopsis thaliana 2.7e-59

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026604
        (236 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2117268 - symbol:AT4G24930 "AT4G24930" species...   608  2.7e-59   1


>TAIR|locus:2117268 [details] [associations]
            symbol:AT4G24930 "AT4G24930" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0010103 "stomatal complex
            morphogenesis" evidence=RCA] [GO:0019761 "glucosinolate
            biosynthetic process" evidence=RCA] GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL161562 GO:GO:0031977 EMBL:AL035523
            GO:GO:0009543 EMBL:AY093198 EMBL:BT006274 IPI:IPI00528084
            PIR:T05514 RefSeq:NP_194223.1 UniGene:At.32309 STRING:Q9SW33
            PaxDb:Q9SW33 PRIDE:Q9SW33 EnsemblPlants:AT4G24930.1 GeneID:828595
            KEGG:ath:AT4G24930 TAIR:At4g24930 eggNOG:NOG320330
            HOGENOM:HOG000237396 InParanoid:Q9SW33 OMA:SKGQEER PhylomeDB:Q9SW33
            ProtClustDB:CLSN2685634 Genevestigator:Q9SW33 GermOnline:AT4G24930
            Uniprot:Q9SW33
        Length = 225

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 117/170 (68%), Positives = 144/170 (84%)

Query:    68 PCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFP 127
             P LA+PS++S  PL   TTPF+QSK +Q GL  +GKIRPCPSTNPGCVSTNP SSSF+FP
Sbjct:    60 PALAIPSLSSSQPL---TTPFTQSKFVQTGLL-NGKIRPCPSTNPGCVSTNPTSSSFSFP 115

Query:   128 LRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGG-FGRDVLEFLVKG 186
             L IPE  T++ I+KL+EAI+ TQKN K  V+EDTP+G+Y++AEV+GG F RDV+EFLVK 
Sbjct:   116 LTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRDVMEFLVKQ 175

Query:   187 DVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWYAPSFDSME 236
             DVVAYR +A KVT+VYPFTTA GDSKGQEER+K++I +LGWYAP+F+SME
Sbjct:   176 DVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       207   0.00099  111 3  11 22  0.40    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.26u 0.09s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.26u 0.09s 20.35t   Elapsed:  00:00:01
  Start:  Mon May 20 17:02:54 2013   End:  Mon May 20 17:02:55 2013

Back to top