BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026604
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BBN|C Chain C, Homology Model For The Spinach Chloroplast 30s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
          Length = 218

 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 88  FSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSS 123
           FSQ KN   GLQED KIR C       V  N K+SS
Sbjct: 23  FSQPKNYAEGLQEDQKIRDCIKN---YVQKNTKTSS 55


>pdb|4G3H|A Chain A, Crystal Structure Of Helicobacter Pylori Arginase
 pdb|4G3H|B Chain B, Crystal Structure Of Helicobacter Pylori Arginase
 pdb|4G3H|C Chain C, Crystal Structure Of Helicobacter Pylori Arginase
 pdb|4G3H|D Chain D, Crystal Structure Of Helicobacter Pylori Arginase
          Length = 330

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 70  LAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDG-KIRPCPSTNPGCVSTNPKSSSFAFPL 128
           + +  V S F  +S +   +  K   LGL++ G +I P      G  ST          L
Sbjct: 139 MVLNRVRSGFNRMSESEEKAWQKLCSLGLEKGGLEIDPKCLVYFGVRSTEQSERDVIREL 198

Query: 129 RIPENSTENAIQKLQEAILKTQKNAK 154
           +IP  S +   + +QE + KT+++ K
Sbjct: 199 QIPLFSVDAIRENMQEVVQKTKESLK 224


>pdb|3LYE|A Chain A, Crystal Structure Of Oxaloacetate Acetylhydrolase
 pdb|3M0J|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
           The Inhibitor 3,3-Difluorooxalacetate
 pdb|3M0K|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
           The Product Oxalate
          Length = 307

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 82  LSPTTPFSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQK 141
           ++   PFS +K L+  L+   ++  CP    G  +       F         +T + + +
Sbjct: 4   MAEDEPFSGAKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQ 63

Query: 142 --LQEAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFG 176
             L  A L   ++    +    PFG  L A++D G+G
Sbjct: 64  PDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYG 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,626,108
Number of Sequences: 62578
Number of extensions: 239606
Number of successful extensions: 489
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 7
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)