BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026604
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW33|TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At4g24930 PE=1 SV=1
Length = 225
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 153/188 (81%), Gaps = 5/188 (2%)
Query: 50 ILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCPS 109
+L L+S AL + S P LA+PS++S PL TTPF+QSK +Q GL +GKIRPCPS
Sbjct: 42 LLPKLISFALAISLTSFSPALAIPSLSSSQPL---TTPFTQSKFVQTGLL-NGKIRPCPS 97
Query: 110 TNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQA 169
TNPGCVSTNP SSSF+FPL IPE T++ I+KL+EAI+ TQKN K V+EDTP+G+Y++A
Sbjct: 98 TNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEA 157
Query: 170 EVD-GGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAELGWY 228
EV+ GGF RDV+EFLVK DVVAYR +A KVT+VYPFTTA GDSKGQEER+K++I +LGWY
Sbjct: 158 EVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWY 217
Query: 229 APSFDSME 236
AP+F+SME
Sbjct: 218 APTFESME 225
>sp|Q3V4Z5|RR3_ACOCL 30S ribosomal protein S3, chloroplastic OS=Acorus calamus GN=rps3
PE=3 SV=1
Length = 218
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 88 FSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPK-SSSFAFPLRIPENSTENAIQ 140
F+Q K+ +GLQED KIR C V NP+ SS F RI + IQ
Sbjct: 23 FAQPKSYSMGLQEDEKIRECIKN---YVQKNPRLSSGFEGIARIEIKKRIDLIQ 73
>sp|P09595|RR3_SPIOL 30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea
GN=rps3 PE=1 SV=3
Length = 218
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 88 FSQSKNLQLGLQEDGKIRPCPSTNPGCVSTNPKSSS 123
FSQ KN GLQED KIR C V N K+SS
Sbjct: 23 FSQPKNYAEGLQEDQKIRDCIKN---YVQKNTKTSS 55
>sp|Q3UM89|FOXR2_MOUSE Forkhead box protein R2 OS=Mus musculus GN=Foxr2 PE=2 SV=1
Length = 302
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 18 SSTIFTKKSSLCHGHHPEPAASTSQALYKKPIILSHLLSLALTAT 62
SS ++KK ++CHG H E ++ + P+ SHL++LAL ++
Sbjct: 160 SSKKYSKKHTVCHGPHRE-----KESWPRPPLNYSHLVALALKSS 199
>sp|Q8CC21|TTC19_MOUSE Tetratricopeptide repeat protein 19, mitochondrial OS=Mus musculus
GN=Ttc19 PE=1 SV=1
Length = 365
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 103 KIRPCPSTNPGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTP 162
+ R P+ G + + F+ P E E+A + + I++ K AK+ +++D P
Sbjct: 44 RTRGAPARGHGVLPLLAALAWFSRPAATAEQPGEDASDEAEAEIIQLLKQAKLSIMKDEP 103
Query: 163 FGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAKK-VTYVYPFTTALGDSKGQEERMKQI 221
L L +AY S +K +TY Y L +GQ E +Q+
Sbjct: 104 EAAEL--------------ILHDALRLAYESDNRKAITYTYDLMANLAFIRGQLENAEQL 149
>sp|B3EUM3|RL3_AMOA5 50S ribosomal protein L3 OS=Amoebophilus asiaticus (strain 5a2)
GN=rplC PE=3 SV=1
Length = 210
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 100 EDGKIRPCPSTNPG-CVSTN----PKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAK 154
E G+ PC G CV T K A L + +N ++ L K Q K
Sbjct: 17 EAGRSVPCTVITGGPCVVTQIKNIEKDGYTAVQLGYDDKKEKNTVKPLMGHFQKAQTTPK 76
Query: 155 IGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAYRSVAK-----KVTYVYPFTTALG 209
+VE FG+ L E+ G + + V+G+ V ++K V + F+ G
Sbjct: 77 RKLVEFKEFGKELGKEIQLGQTIQLHDIFVEGEYVDAIGLSKGKGFQGVVKRHGFSGVGG 136
Query: 210 DSKGQEER 217
S GQ R
Sbjct: 137 KSHGQHNR 144
>sp|Q6FM51|LYS4_CANGA Homoaconitase, mitochondrial OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=LYS4
PE=3 SV=1
Length = 689
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 152 NAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKGDVVAY 191
NAK+ V E +P GQ L + G G+++ E ++KG + +
Sbjct: 645 NAKVYVTEGSPDGQVLLEQKVGELGKNLQEIIIKGGLEGW 684
>sp|Q1D7U3|RPOB_MYXXD DNA-directed RNA polymerase subunit beta OS=Myxococcus xanthus
(strain DK 1622) GN=rpoB PE=3 SV=1
Length = 1408
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 112 PGCVSTNPKSSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQ----YL 167
PG V T + F+ + ++ I+ ++EA L +N +I V++D+ FG+
Sbjct: 945 PGVVGTVINAKVFSRK-GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVR 1003
Query: 168 QAEVDGGFGRDVLEFLVKGDVVAYRSVAKKVTYVYPFTTALGDSKGQEERMKQIIAEL 225
EV G D + L+K + + V Y Y ++GD + R++ I+ L
Sbjct: 1004 TKEVQGKLVDDKGKILLKKGDILDDELLSTVPYKYWGEISVGDP--LDSRLRDILRNL 1059
>sp|Q046F8|GLYA_LACGA Serine hydroxymethyltransferase OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=glyA PE=3 SV=1
Length = 411
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 49 IILSHLLSLALTATFNSPLPCLAVPSVNSQFPLLSPTTPFSQSKNLQLGLQEDGKIRPCP 108
+ ++H+ L T SP+P V + + L P S N +LG + D + P
Sbjct: 195 VDMAHIAGLVATGAHPSPIPVADVVTTTTHKTLRGPRGGMILSNNKKLGKKIDSALFPGT 254
Query: 109 STNPGCVSTNPKSSSFAFPLRIPENST--ENAIQKLQEAILKTQKNAKIGVV 158
P K+ +F L+ PE ST E ++ Q + +K+ I VV
Sbjct: 255 QGGPLEHVIAAKAQAFYEDLQ-PEFSTYIEQVVKNAQAMADEFKKSENIRVV 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,405,979
Number of Sequences: 539616
Number of extensions: 3611435
Number of successful extensions: 9379
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9371
Number of HSP's gapped (non-prelim): 24
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)