Query 026604
Match_columns 236
No_of_seqs 121 out of 246
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gla_A Low molecular weight he 25.5 1.2E+02 0.0042 21.6 5.1 40 150-194 4-44 (100)
2 4fei_A Heat shock protein-rela 19.7 1.9E+02 0.0064 20.9 5.1 39 150-193 6-45 (102)
3 3pqz_A Growth factor receptor- 13.4 3.9E+02 0.013 19.3 5.7 48 121-170 9-56 (117)
4 2dlz_A Protein VAV-2; RHO fami 12.7 3.5E+02 0.012 19.9 5.2 47 121-171 11-57 (118)
5 4fbn_A 1-phosphatidylinositol 12.4 5.4E+02 0.019 21.6 6.9 50 123-172 1-57 (246)
6 4eld_A MJ16.5-P1, small heat s 11.8 3.7E+02 0.013 20.9 5.3 37 153-194 59-96 (161)
7 1jy2_N Fibrinogen alpha chain; 11.5 1.1E+02 0.0036 21.3 1.6 11 215-225 38-48 (53)
8 3aab_A Putative uncharacterize 11.3 4E+02 0.014 19.7 5.1 41 149-194 23-65 (123)
9 1n6j_G Calcineurin-binding pro 11.2 1.5E+02 0.0051 18.7 2.1 22 136-157 11-32 (35)
10 4fr9_A Uncharacterized protein 10.9 3.5E+02 0.012 21.0 4.8 39 144-186 18-56 (144)
No 1
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=25.53 E-value=1.2e+02 Score=21.57 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=25.8
Q ss_pred CCCcEEEEeecCCCCCe-EEEEEeccccCccEEEEEcCCEEEEEee
Q 026604 150 QKNAKIGVVEDTPFGQY-LQAEVDGGFGRDVLEFLVKGDVVAYRSV 194 (236)
Q Consensus 150 ~~~~kIv~~e~~~~g~Y-L~Ae~~SgF~dDvvEFl~~~~vV~vRSa 194 (236)
.|.+.|.+.++ .| |.++.. ||..|++++.+.++.+.++-.
T Consensus 4 ~P~~di~e~~~----~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~ 44 (100)
T 3gla_A 4 VPRVDIKEEVN----HFVLYADLP-GIDPSQIEVQMDKGILSIRGE 44 (100)
T ss_dssp CCCEEEEECSS----EEEEEEECT-TSCGGGCEEEEETTEEEEEEE
T ss_pred cCcEEEEECCC----EEEEEEECC-CCCHHHEEEEEECCEEEEEEE
Confidence 46677777553 44 334333 676677799998887777643
No 2
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=19.73 E-value=1.9e+02 Score=20.91 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCCcEEEEeecCCCCCe-EEEEEeccccCccEEEEEcCCEEEEEe
Q 026604 150 QKNAKIGVVEDTPFGQY-LQAEVDGGFGRDVLEFLVKGDVVAYRS 193 (236)
Q Consensus 150 ~~~~kIv~~e~~~~g~Y-L~Ae~~SgF~dDvvEFl~~~~vV~vRS 193 (236)
.|.+.|.+.++ .| |.++.. ||..|++++.++++.+.++-
T Consensus 6 ~P~~di~e~~~----~~~v~~~lP-G~~~edi~v~~~~~~L~I~g 45 (102)
T 4fei_A 6 TPAADWRDAGT----HLDLLLDVP-GVDAGTLALAEDGGQLTVSG 45 (102)
T ss_dssp CCCEEEEEETT----EEEEEEECT-TCCGGGCEEEEETTEEEEEE
T ss_pred cCcEEEEEcCC----EEEEEEECC-CCchHhEEEEEECCEEEEEE
Confidence 35667777654 34 444443 67667779999888777743
No 3
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Probab=13.44 E-value=3.9e+02 Score=19.34 Aligned_cols=48 Identities=4% Similarity=-0.175 Sum_probs=28.2
Q ss_pred CCCCccCCcCCCCCHHHHHHHHHHHHHHHCCCcEEEEeecCCCCCeEEEE
Q 026604 121 SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAE 170 (236)
Q Consensus 121 ~~~~~~P~~~~~~s~~~A~~~L~~AvL~s~~~~kIv~~e~~~~g~YL~Ae 170 (236)
..+...||....-++++|-+.|+. -....|+=++...+...|.|.-..
T Consensus 9 ~~~~~~~Wyhg~isR~~Ae~lL~~--~g~~~G~FLVR~S~~~~g~y~LSv 56 (117)
T 3pqz_A 9 AIHRTQLWFHGRISREESQRLIGQ--QGLVDGLFLVRESQRNPQGFVLSL 56 (117)
T ss_dssp CGGGGCTTBCCSCCHHHHHHHHHH--TTCCTTEEEEEECCC-CCCEEEEE
T ss_pred hhcccCccccCCCCHHHHHHHHhc--CCCCCCEEEEEecCCCCCcEEEEE
Confidence 456677998866688888776633 112246666665544346664433
No 4
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.73 E-value=3.5e+02 Score=19.92 Aligned_cols=47 Identities=6% Similarity=-0.030 Sum_probs=29.9
Q ss_pred CCCCccCCcCCCCCHHHHHHHHHHHHHHHCCCcEEEEeecCCCCCeEEEEE
Q 026604 121 SSSFAFPLRIPENSTENAIQKLQEAILKTQKNAKIGVVEDTPFGQYLQAEV 171 (236)
Q Consensus 121 ~~~~~~P~~~~~~s~~~A~~~L~~AvL~s~~~~kIv~~e~~~~g~YL~Ae~ 171 (236)
.+....+|....-++++|-+.|+. ...|+=++...+...|.|.-...
T Consensus 11 ~~l~~~~WyhG~isR~~Ae~lL~~----~~~G~FLVR~S~~~~g~y~LSv~ 57 (118)
T 2dlz_A 11 IDYTAYPWFAGNMERQQTDNLLKS----HASGTYLIRERPAEAERFAISIK 57 (118)
T ss_dssp CCGGGSTTEEESCCHHHHHHHHHH----SCTTBEEEECCSCSSCCEEEEEE
T ss_pred cccccCCceecCCCHHHHHHHhcC----CCCCEEEEEeCCCCCCCEEEEEE
Confidence 344566898866788888887754 24566666665544566655444
No 5
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=12.40 E-value=5.4e+02 Score=21.57 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=27.9
Q ss_pred CCccCCcCCCC-----CHHHHHHHHHHHHHH--HCCCcEEEEeecCCCCCeEEEEEe
Q 026604 123 SFAFPLRIPEN-----STENAIQKLQEAILK--TQKNAKIGVVEDTPFGQYLQAEVD 172 (236)
Q Consensus 123 ~~~~P~~~~~~-----s~~~A~~~L~~AvL~--s~~~~kIv~~e~~~~g~YL~Ae~~ 172 (236)
|.-+||....- ++++|-+.|++..++ ...|+=++.+.++..|+|.--...
T Consensus 1 H~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~ 57 (246)
T 4fbn_A 1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWR 57 (246)
T ss_dssp --CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEE
T ss_pred CCCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEE
Confidence 44578986433 577787777553232 234566666655555777655443
No 6
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=11.79 E-value=3.7e+02 Score=20.94 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=23.1
Q ss_pred cEEEEeecCCCCCe-EEEEEeccccCccEEEEEcCCEEEEEee
Q 026604 153 AKIGVVEDTPFGQY-LQAEVDGGFGRDVLEFLVKGDVVAYRSV 194 (236)
Q Consensus 153 ~kIv~~e~~~~g~Y-L~Ae~~SgF~dDvvEFl~~~~vV~vRSa 194 (236)
+.|.+.++ .| |.++. -|+..|++++.+.++.+.++-.
T Consensus 59 vdi~e~~~----~~~v~~dl-PG~~~edi~V~~~~~~L~I~g~ 96 (161)
T 4eld_A 59 ISIIEGDQ----HIKVIAWL-PGVNKEDIILNAVGDTLEIRAK 96 (161)
T ss_dssp EEEEECSS----EEEEEEEC-TTCCGGGEEEEEETTEEEEEEE
T ss_pred eeEEEeCC----EEEEEEEC-CCCChHhEEEEEECCEEEEEEE
Confidence 56666543 34 33333 3676677799998887777543
No 7
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=11.47 E-value=1.1e+02 Score=21.33 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=9.9
Q ss_pred HHHHHHHHHHh
Q 026604 215 EERMKQIIAEL 225 (236)
Q Consensus 215 RkRvE~IR~~L 225 (236)
-+|||.||++|
T Consensus 38 ~~RI~kl~~~L 48 (53)
T 1jy2_N 38 TSRINKLRDSL 48 (53)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999999988
No 8
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=11.25 E-value=4e+02 Score=19.70 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=27.9
Q ss_pred HCCCcEEEEeecCCCCCe-EEEEEeccccCccEEEEEcC-CEEEEEee
Q 026604 149 TQKNAKIGVVEDTPFGQY-LQAEVDGGFGRDVLEFLVKG-DVVAYRSV 194 (236)
Q Consensus 149 s~~~~kIv~~e~~~~g~Y-L~Ae~~SgF~dDvvEFl~~~-~vV~vRSa 194 (236)
..|.+.|.+.++ .| |.++.. |+..|++++.+.+ +.+.++-.
T Consensus 23 ~~P~~di~e~~~----~~~v~~~lP-G~~~edi~V~v~~~~~L~I~g~ 65 (123)
T 3aab_A 23 VYPPVDMYEEGG----YLVVVADLA-GFNKEKIKARVSGQNELIIEAE 65 (123)
T ss_dssp HCSCEEEEEETT----EEEEEEECC-SCCGGGCEEEEETTTEEEEEEE
T ss_pred CCCcEEEEEcCC----EEEEEEECC-CCCHHHEEEEEeCCCEEEEEEE
Confidence 458888887664 45 444444 6666667999988 87777655
No 9
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=11.24 E-value=1.5e+02 Score=18.70 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHCCCcEEEE
Q 026604 136 ENAIQKLQEAILKTQKNAKIGV 157 (236)
Q Consensus 136 ~~A~~~L~~AvL~s~~~~kIv~ 157 (236)
++..++|+.++|.++..+.|..
T Consensus 11 eetkqklk~~ils~qsaanv~~ 32 (35)
T 1n6j_G 11 EETKQKLKSAILSAQSAANVRK 32 (35)
T ss_dssp HHHHHHHHHHHHTTCSTTC---
T ss_pred HHHHHHHHHHHHhhHhhhcccc
Confidence 7889999998888887766644
No 10
>4fr9_A Uncharacterized protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-biology; HET: MLY MSE; 1.20A {Bacteroides fragilis}
Probab=10.87 E-value=3.5e+02 Score=21.01 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=26.8
Q ss_pred HHHHHHCCCcEEEEeecCCCCCeEEEEEeccccCccEEEEEcC
Q 026604 144 EAILKTQKNAKIGVVEDTPFGQYLQAEVDGGFGRDVLEFLVKG 186 (236)
Q Consensus 144 ~AvL~s~~~~kIv~~e~~~~g~YL~Ae~~SgF~dDvvEFl~~~ 186 (236)
.|+-+..|+++.++-+. .++|..|+|... +.+ .|.+|+.
T Consensus 18 ~af~~~YP~A~~veWe~--~~~~yea~F~~~-g~e-~~a~Fd~ 56 (144)
T 4fr9_A 18 DALXXLYPNATAIXWEQ--XGVYYVADCQAD-GRE-XEVWFDA 56 (144)
T ss_dssp HHHHHHCTTCEEEEEEE--ETTEEEEEEEET-TEE-EEEEECT
T ss_pred HHHHhhCCCCCeEEEEE--cCCeEEEEEEeC-CEE-EEEEECC
Confidence 35667899998776663 358999999862 113 3677765
Done!