Query 026607
Match_columns 236
No_of_seqs 262 out of 1215
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.2E-26 4.1E-31 167.9 5.6 63 108-170 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 90.7 0.091 3.1E-06 39.3 1.6 44 106-153 4-57 (77)
3 1u3e_M HNH homing endonuclease 81.9 0.2 6.9E-06 40.9 -0.8 38 110-151 109-146 (174)
4 1z1b_A Integrase; protein-DNA 79.4 1.8 6.3E-05 36.8 4.3 41 112-157 15-55 (356)
5 3jtz_A Integrase; four strande 43.6 38 0.0013 24.8 4.9 44 113-157 28-75 (88)
6 1b69_A Protein (integrase); in 33.9 27 0.00092 25.3 2.6 26 108-135 10-35 (69)
7 1x60_A Sporulation-specific N- 27.3 25 0.00085 24.3 1.5 23 133-155 46-68 (79)
8 2ftc_I Mitochondrial ribosomal 26.7 85 0.0029 24.4 4.7 36 121-159 80-115 (118)
9 3ju0_A Phage integrase; four s 24.9 92 0.0031 23.6 4.5 44 113-157 28-75 (108)
10 1uta_A FTSN, MSGA, cell divisi 22.7 43 0.0015 23.4 2.1 23 133-155 46-68 (81)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=1.2e-26 Score=167.93 Aligned_cols=63 Identities=75% Similarity=1.310 Sum_probs=60.0
Q ss_pred CceeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 026607 108 ARYRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRGSKAKLNFPHLI 170 (236)
Q Consensus 108 S~YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G~~A~lNFP~~~ 170 (236)
.+||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||+.|
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 379999999999999999999888999999999999999999999999999999999999864
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=90.65 E-value=0.091 Score=39.34 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCceeEEEeCC-CCcEEEEEeCCCCCCeeee-------cCCC--CCHHHHHHHHHHH
Q 026607 106 VGARYRGVRRRP-WGKFVAEIRDPKKNGTRIW-------LGTY--NTPEDAALAYDRA 153 (236)
Q Consensus 106 ~~S~YRGVr~r~-~GKW~A~I~~~~k~Gkrv~-------LGtF--dT~EEAA~AYD~A 153 (236)
..|+|.||++.+ .+.|.|.-.+ +|++.. +| | +.+.+||..|.+.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~ 57 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYD---GASRRSRTFHPKHFN-MDKEKARLAAVEFMKT 57 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEE---TTEEEEEEECCTTHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEeecCCceEEEEEec---CCeEeeeeechhhcC-cCHHHHHHHHHHHHHH
Confidence 578999999776 7999999998 666542 44 4 3455555555443
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=81.89 E-value=0.2 Score=40.90 Aligned_cols=38 Identities=8% Similarity=-0.136 Sum_probs=29.0
Q ss_pred eeEEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHH
Q 026607 110 YRGVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYD 151 (236)
Q Consensus 110 YRGVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD 151 (236)
++||.+...++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 467654234678899987 4 4578999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=79.35 E-value=1.8 Score=36.79 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=31.4
Q ss_pred EEEeCCCCcEEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhh
Q 026607 112 GVRRRPWGKFVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNM 157 (236)
Q Consensus 112 GVr~r~~GKW~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l 157 (236)
||++++.|.|+.+... +|+++.+|. |..||..+..++...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 6777778999988765 788999996 8888877766655444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=43.59 E-value=38 Score=24.80 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=29.2
Q ss_pred EEeCCCC--cEEEEEeCCCCCCeeeecCCCC--CHHHHHHHHHHHHHhh
Q 026607 113 VRRRPWG--KFVAEIRDPKKNGTRIWLGTYN--TPEDAALAYDRAAFNM 157 (236)
Q Consensus 113 Vr~r~~G--KW~A~I~~~~k~Gkrv~LGtFd--T~EEAA~AYD~AA~~l 157 (236)
++-.+.| .|.-+.+... +-+++-||.|. |.+||....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~G-k~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISG-KESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETT-EEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCC-eEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444544 4888887622 22568899997 5888887777766655
No 6
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=33.92 E-value=27 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=20.3
Q ss_pred CceeEEEeCCCCcEEEEEeCCCCCCeee
Q 026607 108 ARYRGVRRRPWGKFVAEIRDPKKNGTRI 135 (236)
Q Consensus 108 S~YRGVr~r~~GKW~A~I~~~~k~Gkrv 135 (236)
--+.|+++++.|+|+..+.+. .|++.
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~--~Gkr~ 35 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDS--FGEPQ 35 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECT--TSSEE
T ss_pred ccCCCeEEccCCcEEEEEEcC--CCCEE
Confidence 446789999999999999984 35554
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.27 E-value=25 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.8
Q ss_pred eeeecCCCCCHHHHHHHHHHHHH
Q 026607 133 TRIWLGTYNTPEDAALAYDRAAF 155 (236)
Q Consensus 133 krv~LGtFdT~EEAA~AYD~AA~ 155 (236)
.||++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47899999999999888766544
No 8
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.74 E-value=85 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.4
Q ss_pred EEEEEeCCCCCCeeeecCCCCCHHHHHHHHHHHHHhhcC
Q 026607 121 FVAEIRDPKKNGTRIWLGTYNTPEDAALAYDRAAFNMRG 159 (236)
Q Consensus 121 W~A~I~~~~k~Gkrv~LGtFdT~EEAA~AYD~AA~~l~G 159 (236)
|+|.|.. ...-+-++...+++.|..|..+|+.+|-+
T Consensus 80 wva~Vk~---G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA---GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC---CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999986 22334555557899999999999998743
No 9
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=24.85 E-value=92 Score=23.63 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=28.2
Q ss_pred EEeCCCC--cEEEEEeCCCCCCeeeecCCCC--CHHHHHHHHHHHHHhh
Q 026607 113 VRRRPWG--KFVAEIRDPKKNGTRIWLGTYN--TPEDAALAYDRAAFNM 157 (236)
Q Consensus 113 Vr~r~~G--KW~A~I~~~~k~Gkrv~LGtFd--T~EEAA~AYD~AA~~l 157 (236)
++-.+.| .|.-+.+... +-+++-||.|. |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~G-K~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEK-KQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETT-EEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcC-ceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444544 4888887622 22467899997 5778877776665555
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=22.71 E-value=43 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.8
Q ss_pred eeeecCCCCCHHHHHHHHHHHHH
Q 026607 133 TRIWLGTYNTPEDAALAYDRAAF 155 (236)
Q Consensus 133 krv~LGtFdT~EEAA~AYD~AA~ 155 (236)
.||.+|-|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47999999999999888766554
Done!