BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026608
MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSL
AEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDS
EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKG
QLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ

High Scoring Gene Products

Symbol, full name Information P value
AT1G77090 protein from Arabidopsis thaliana 6.7e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026608
        (236 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025292 - symbol:AT1G77090 species:3702 "Arabi...   127  6.7e-08   1


>TAIR|locus:2025292 [details] [associations]
            symbol:AT1G77090 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0009654 "oxygen evolving complex" evidence=IEA]
            [GO:0015979 "photosynthesis" evidence=IEA] [GO:0019898 "extrinsic
            to membrane" evidence=IEA] [GO:0009543 "chloroplast thylakoid
            lumen" evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0009570 "chloroplast
            stroma" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0000023 "maltose metabolic process" evidence=RCA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0019252
            "starch biosynthetic process" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0019760
            "glucosinolate metabolic process" evidence=RCA] [GO:0043085
            "positive regulation of catalytic activity" evidence=RCA]
            InterPro:IPR002683 Pfam:PF01789 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0019898 GO:GO:0005509
            EMBL:AC002291 GO:GO:0009534 GO:GO:0031977 GO:GO:0015979
            GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
            SUPFAM:SSF55724 GO:GO:0009654 EMBL:AK228434 EMBL:AF370571
            IPI:IPI00546677 PIR:G96799 RefSeq:NP_565149.2 UniGene:At.43604
            ProteinModelPortal:O49292 STRING:O49292 PaxDb:O49292 PRIDE:O49292
            EnsemblPlants:AT1G77090.1 GeneID:844043 KEGG:ath:AT1G77090
            TAIR:At1g77090 eggNOG:NOG322720 HOGENOM:HOG000244007
            InParanoid:O49292 OMA:PEVIGEN PhylomeDB:O49292 ProtClustDB:PLN00066
            BioCyc:MetaCyc:AT1G77090-MONOMER Genevestigator:O49292
            GermOnline:AT1G77090 Uniprot:O49292
        Length = 260

 Score = 127 (49.8 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 38/147 (25%), Positives = 62/147 (42%)

Query:    95 YIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLA 154
             Y + VP  W E  VS  + G    D  F +PK+      +  +  F      D  + N+ 
Sbjct:   116 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIG 175

Query:   155 LSDVDLQ----DLLAS--ADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYA 208
                  +     +++      KV S    +  G+LYY +E++    H LI+ T A N+LY 
Sbjct:   176 QPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEP--PHVLITATAAGNRLYL 233

Query:   209 HFVNAPTPEWNRDEETLRHVHESFKTV 235
               V     +W R  + L+ +  SF+ V
Sbjct:   234 FSVTGNGLQWKRHYKDLKRIASSFRIV 260


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       172   0.00093  108 3  11 23  0.47    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.18u 0.10s 18.28t   Elapsed:  00:00:38
  Total cpu time:  18.18u 0.10s 18.28t   Elapsed:  00:00:38
  Start:  Fri May 10 22:01:08 2013   End:  Fri May 10 22:01:46 2013

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