BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026608
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At3g63540 PE=1 SV=2
Length = 229
Score = 321 bits (822), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/235 (66%), Positives = 185/235 (78%), Gaps = 9/235 (3%)
Query: 1 MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSL 60
MA + +SP+IS A +TP P + T + T+ L T++ P+
Sbjct: 1 MATKIFLASPVIS------ATRTPIVPKAIASRLGTSLAAALAATSVL---TMVPVLPAA 51
Query: 61 AEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDS 120
E QTY IYYGTAASAANYGGYGGNSD+K SAEY+YDVP+GWKERLVSKVEKGTNGTDS
Sbjct: 52 GEGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDS 111
Query: 121 EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKG 180
EFYNPKK+TEKEYLTFLAGFRQLAP+D +LNNLALSDV+LQDL+A ADKV SEE+KD+ G
Sbjct: 112 EFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETG 171
Query: 181 QLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
Q+YY+YEIDGVG HSLI+VTC+ N+LYAHFVNAP PEWNRD +TL H+ +SFKTV
Sbjct: 172 QVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226
>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis
thaliana GN=PPD4 PE=1 SV=2
Length = 260
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 95 YIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLA 154
Y + VP W E VS + G D F +PK+ L+ + +AP +NL
Sbjct: 116 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGR----LSVI-----VAPVLRFADNLG 166
Query: 155 LSDVDLQDLLASA----------------DKVASEEKKDDKGQLYYVYEIDGVGSHSLIS 198
DV ++++ A KV S + G+LYY +E++ H LI+
Sbjct: 167 -DDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEP--PHVLIT 223
Query: 199 VTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
T A N+LY V +W R + L+ + SF+ V
Sbjct: 224 ATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260
>sp|Q3AAC8|SFSA_CARHZ Sugar fermentation stimulation protein homolog OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=sfsA PE=3
SV=1
Length = 229
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 168 DKVASEEKKDDKGQLYYVYEI---DGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEET 224
D+VA+E+ KGQ + +++ D G + SVT K YA F +APTP R E
Sbjct: 104 DQVAAEQ---TKGQSRFDFKVQLRDKTGFIEVKSVTLVEGK-YALFPDAPTPRGVRHLEE 159
Query: 225 LRHVHESFKT 234
LR + + T
Sbjct: 160 LRALSSQYLT 169
>sp|P53933|APP1_YEAST Phosphatidate phosphatase APP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APP1 PE=1 SV=1
Length = 587
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 64 AQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTN 116
A TY++ +S +YG YG DKKA D WK R++ ++K +N
Sbjct: 520 ANTYYV----PSSQNDYGMYGAFMDKKA---------DEWKRRVMDSIQKLSN 559
>sp|Q1MWH4|CYB_DACTR Cytochrome b OS=Dactylopsila trivirgata GN=MT-CYB PE=3 SV=1
Length = 381
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 30 SSLFTPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANY 80
S +F P Q+L LLTA LAT T + P + EP +I G AAS +
Sbjct: 314 SMMFRPISQTLFWLLTANLATLTWIGGQP-VEEP----YIIIGQAASITYF 359
>sp|A5EPC1|MIAA_BRASB tRNA dimethylallyltransferase OS=Bradyrhizobium sp. (strain BTAi1
/ ATCC BAA-1182) GN=miaA PE=3 SV=2
Length = 305
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 53 LLTASPSLAEPAQTYHIYYGTAASAANY 80
+LTA PSLAE A H YG +A NY
Sbjct: 49 VLTARPSLAEEAAVPHRLYGCVDAAVNY 76
>sp|Q9XT84|IL2_DELLE Interleukin-2 OS=Delphinapterus leucas GN=IL2 PE=2 SV=1
Length = 154
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 121 EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLN---NLALSDVDLQDLLASADKVA 171
+FY PKK TE ++L LA +L P + VLN + + +D++DL+ + +++
Sbjct: 63 KFYMPKKATELKHLQCLA--EELKPLEDVLNVAQSKTQNSIDIKDLMDNINRIV 114
>sp|O97513|IL2_ORCOR Interleukin-2 (Fragment) OS=Orcinus orca GN=IL2 PE=2 SV=1
Length = 152
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 121 EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLN---NLALSDVDLQDLLASADKVA 171
+FY PKK TE ++L LA +L P + VLN + + +D++DL+ + +++
Sbjct: 63 KFYMPKKATELKHLQCLA--EELKPLEDVLNVAQSKTQNSIDIKDLMDNINRIV 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,340,297
Number of Sequences: 539616
Number of extensions: 3876269
Number of successful extensions: 13308
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 12203
Number of HSP's gapped (non-prelim): 1152
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)