Query 026608
Match_columns 236
No_of_seqs 130 out of 229
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.2E-35 3.9E-40 252.2 11.2 139 90-235 14-177 (177)
2 2xb3_A PSBP protein; photosynt 100.0 2.7E-34 9.3E-39 238.3 14.5 147 80-235 5-165 (165)
3 2lnj_A SLL1418 protein, putati 100.0 3E-35 1E-39 246.5 0.0 142 88-235 19-170 (170)
4 1tu1_A Hypothetical protein PA 97.9 0.00021 7.2E-09 57.8 13.1 126 93-234 9-141 (148)
5 3lyd_A Uncharacterized protein 96.3 0.15 5.2E-06 42.3 14.4 126 93-235 18-158 (161)
6 4exr_A Putative lipoprotein; Y 46.4 35 0.0012 27.9 5.7 20 170-189 131-150 (174)
7 4exr_A Putative lipoprotein; Y 46.0 64 0.0022 26.3 7.2 44 170-213 50-93 (174)
8 3hlz_A Uncharacterized protein 44.0 82 0.0028 27.8 7.8 86 92-186 11-96 (269)
9 1ywi_A Formin-binding protein 33.8 18 0.00063 22.8 1.6 21 201-221 19-39 (41)
10 2ysi_A Transcription elongatio 32.7 14 0.00047 23.4 0.8 21 201-221 17-37 (40)
11 3ld7_A LIN0431 protein; DUF131 30.6 1.3E+02 0.0043 22.6 6.1 40 176-216 12-62 (101)
12 3sbq_A Nitrous-oxide reductase 28.3 28 0.00095 34.6 2.5 25 31-55 15-39 (638)
13 1e0l_A Formin binding protein; 28.3 17 0.00059 22.3 0.7 21 201-221 13-33 (37)
14 1e0n_A Hypothetical protein; Y 27.9 12 0.00041 21.9 -0.1 20 201-220 7-26 (27)
15 2jxw_A WW domain-binding prote 27.4 45 0.0016 23.3 2.9 25 196-220 48-72 (75)
16 4esn_A Hypothetical protein; p 26.5 1.4E+02 0.0046 22.7 5.7 40 176-216 22-65 (104)
17 2kpp_A LIN0431 protein; soluti 24.7 1.1E+02 0.0038 23.5 4.9 41 176-216 12-62 (114)
18 2le2_A P56; UDG inhibition, DN 24.7 75 0.0026 21.5 3.4 29 174-202 15-53 (56)
19 3k44_A Purine-rich binding pro 24.3 1.2E+02 0.0043 24.4 5.3 60 171-232 82-143 (146)
20 3c2i_A Methyl-CPG-binding prot 23.2 56 0.0019 24.7 2.9 43 99-154 24-67 (97)
21 3vxv_A Methyl-CPG-binding doma 22.0 69 0.0023 22.6 3.0 44 99-155 6-50 (69)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.2e-35 Score=252.23 Aligned_cols=139 Identities=17% Similarity=0.271 Sum_probs=114.0
Q ss_pred CCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEee----cccccCChHHHHHHH----Hhhcccc-
Q 026608 90 KASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLA----GFRQLAPKDAVLNNL----ALSDVDL- 160 (236)
Q Consensus 90 ~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~s----~i~~LG~peevl~~l----~~~~~~~- 160 (236)
.|+|.|.| |++|+++++. +..|+|++|+|+++..+||+|+|.. +|++||+|+++++.+ ..+.+..
T Consensus 14 ~~gysf~y--P~~W~~~~~~----~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~~~~ 87 (177)
T 1v2b_A 14 GDGFKLQI--PSKWNPNKEV----EYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGK 87 (177)
T ss_dssp CSSEEEEE--ETTCEECCCC----CSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--------
T ss_pred cCCEEEEc--CCCCcccccc----cCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhhccc
Confidence 46777777 9999998754 3679999999999999999999874 999999999975554 3332322
Q ss_pred --------chhcccccceeeceeeecCCeeeEEEEEc----c---CCceeEEEEEEeCCEEEEEEeecCCccchhh-HHH
Q 026608 161 --------QDLLASADKVASEEKKDDKGQLYYVYEID----G---VGSHSLISVTCANNKLYAHFVNAPTPEWNRD-EET 224 (236)
Q Consensus 161 --------~~~i~~a~~llsa~~r~~dGktYY~yE~~----~---~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~-~~~ 224 (236)
+++++ ..+|+++++++.||++||+|||. + ++||+|+++||+|||||+|++|++|+||.|+ ++.
T Consensus 88 ~~~~~gf~~~~~~-~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~ 166 (177)
T 1v2b_A 88 TDSEGGFESDAVA-IANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKF 166 (177)
T ss_dssp ----------CCC-EEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHH
T ss_pred ccccCCcccCccc-ceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhhhHHHH
Confidence 23334 34599999999999999999998 2 6899999999999999999999999999996 999
Q ss_pred HHHHhhcceec
Q 026608 225 LRHVHESFKTV 235 (236)
Q Consensus 225 Lr~VvdSF~V~ 235 (236)
|++|++||+|.
T Consensus 167 l~~v~~SF~v~ 177 (177)
T 1v2b_A 167 VENTATSFSLA 177 (177)
T ss_dssp HHHHHHTCEEC
T ss_pred HHHHHhheecC
Confidence 99999999983
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=2.7e-34 Score=238.34 Aligned_cols=147 Identities=22% Similarity=0.386 Sum_probs=127.6
Q ss_pred cCCcCCcccCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe-----ecccccCChHHHHHHHH
Q 026608 80 YGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL-----AGFRQLAPKDAVLNNLA 154 (236)
Q Consensus 80 ~GG~g~~~d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~-----s~i~~LG~peevl~~l~ 154 (236)
.+||..+.|..++|.|.| |++|+++.++ +|+|++|+|+++..+||+|+|. .+|++||+|++++++|+
T Consensus 5 ~~g~~~~~D~~~gysf~~--P~~W~~~~~~------~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~ 76 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLY--PRGWVQVQVE------DPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLL 76 (165)
T ss_dssp -CCEEEEEETTTTEEEEE--ETTEEEECCC------TTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHH
T ss_pred CCCceEEEcCCCCEEEEc--CCCCeEecCC------CCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHH
Confidence 456777777778877766 9999998742 3899999999999999999886 36889999999999998
Q ss_pred hhccccchhcccccceeeceeeecCCeeeEEEEEc----c-----CCceeEEEEEEeCCEEEEEEeecCCccchhhHHHH
Q 026608 155 LSDVDLQDLLASADKVASEEKKDDKGQLYYVYEID----G-----VGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETL 225 (236)
Q Consensus 155 ~~~~~~~~~i~~a~~llsa~~r~~dGktYY~yE~~----~-----~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~L 225 (236)
.+.+..++.... .+|+++..++.+|++||+|||. . +.||+|++++|.+||||+|++++||+||.++++.|
T Consensus 77 ~~~~~~~~~~~~-~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~~~~l 155 (165)
T 2xb3_A 77 RNIIAPSESGRS-SALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQF 155 (165)
T ss_dssp HHTTSCTTSSCE-EEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHHHHHH
T ss_pred HHhhcCCCCCcc-eEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHHHHHHH
Confidence 777766665553 4599999899999999999998 3 67999999999999999999999999999999999
Q ss_pred HHHhhcceec
Q 026608 226 RHVHESFKTV 235 (236)
Q Consensus 226 r~VvdSF~V~ 235 (236)
++|++||+|+
T Consensus 156 ~~v~~SF~v~ 165 (165)
T 2xb3_A 156 KTIVSSFTVY 165 (165)
T ss_dssp HHHHHTCEEC
T ss_pred HHHHhhEEeC
Confidence 9999999986
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=3e-35 Score=246.51 Aligned_cols=142 Identities=25% Similarity=0.384 Sum_probs=124.6
Q ss_pred cCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe-----ecccccCChHHHHHHHHhhccccch
Q 026608 88 DKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL-----AGFRQLAPKDAVLNNLALSDVDLQD 162 (236)
Q Consensus 88 d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~-----s~i~~LG~peevl~~l~~~~~~~~~ 162 (236)
|..|+|.|.| |+||+++.+++ +.+|+|++|+|+++..+||+|+|. .+|++||+|++++++|....+..++
T Consensus 19 d~~~gy~f~~--P~gW~~~~~~~---~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~~~~ 93 (170)
T 2lnj_A 19 DTKDGYEFLY--PNGWIGVDVKG---ASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVNDASQ 93 (170)
Confidence 5557766666 99999987643 356999999999999999999876 3688999999999999877776666
Q ss_pred hcccccceeeceeeecCCeeeEEEEEc-----cCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhcceec
Q 026608 163 LLASADKVASEEKKDDKGQLYYVYEID-----GVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235 (236)
Q Consensus 163 ~i~~a~~llsa~~r~~dGktYY~yE~~-----~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V~ 235 (236)
..+.+ +|+++.+++.||++||+|||. ++.||+|++++|.+||||+|++++||+||.+.++.|++|++||+|+
T Consensus 94 ~~~~a-~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 94 GDRQA-ELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 66644 489998899999999999999 5679999999999999999999999999999999999999999986
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=97.92 E-value=0.00021 Score=57.77 Aligned_cols=126 Identities=10% Similarity=0.131 Sum_probs=77.5
Q ss_pred ccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCc-eEEEEEe-ecccccCChHHHHHHHHhhc-cccchhcccccc
Q 026608 93 AEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTE-KEYLTFL-AGFRQLAPKDAVLNNLALSD-VDLQDLLASADK 169 (236)
Q Consensus 93 ~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~e-nVsvvi~-s~i~~LG~peevl~~l~~~~-~~~~~~i~~a~~ 169 (236)
.++.+.+|.||+...+ -+ |..+.++.. ..+++|. ..+.+=.+.++.+++-+... -.+++--
T Consensus 9 ~Egsl~lP~gw~D~t~----------nv-~~~~~~~~~g~~~lvIsR~~~~~~~~l~~~~~~q~~~l~~~l~~y~----- 72 (148)
T 1tu1_A 9 HEADLEIPDAWQDQSI----------NI-FKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFK----- 72 (148)
T ss_dssp SSEEEEEETTSEECCB----------EE-EEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHHHHHHSTTCE-----
T ss_pred CCEEEeCCCCcEeeeE----------EE-EEcCCCCCCCceEEEEEeccCCCCCCHHHHHHHHHHHHHhhCcCcE-----
Confidence 4688999999995543 22 333322211 0344554 33433234444443321110 0112111
Q ss_pred eeeceeeecCCeeeEEEEEc----cCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhccee
Q 026608 170 VASEEKKDDKGQLYYVYEID----GVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKT 234 (236)
Q Consensus 170 llsa~~r~~dGktYY~yE~~----~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V 234 (236)
++.......+|..--.+|+. +...|+.-.+.+..+++|+|..+++..-|...++.++.|++||+.
T Consensus 73 ~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 73 LHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP 141 (148)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred EeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence 22333334477776666666 445799888888877999999999999999999999999999985
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=96.29 E-value=0.15 Score=42.32 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=75.4
Q ss_pred ccEEeeCCCCceecceeccccCCCCcceEEe-CCCCCC--ceEEEEEeecccccC-C-hHHHHHHHHhhccc-cchhccc
Q 026608 93 AEYIYDVPDGWKERLVSKVEKGTNGTDSEFY-NPKKRT--EKEYLTFLAGFRQLA-P-KDAVLNNLALSDVD-LQDLLAS 166 (236)
Q Consensus 93 ~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~-d~~~~~--enVsvvi~s~i~~LG-~-peevl~~l~~~~~~-~~~~i~~ 166 (236)
..+.+.+|.||+...+ .|.-+.-. +...+. -|+.|.+. +++ + -|+.-..|- +..+ +++.-
T Consensus 18 p~~~v~~P~gWe~~~~-------~~~~~~~~~~~~~~~F~pN~vVtv~----r~~~~~~e~~r~el~-~~~~~lp~~~-- 83 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPT-------MGTQFAARPHTPPQGFTPNIIGTVR----RAATGALHNQRTELD-QRATQLPDYA-- 83 (161)
T ss_dssp CEEEEECCTTEEECTT-------SSSSEEEEESSCCSSSCCEEEEEEE----EECTTHHHHHHHHHH-HHHTTSTTCE--
T ss_pred ceeeccCCCCceEcCC-------CCceEEeccCCCCCCccccEEEEEE----ecCcHHHHHHHHHHH-HHHhhCCCcE--
Confidence 4599999999999863 22222222 222322 46644332 332 1 122111111 1111 34331
Q ss_pred ccceeeceeeecCCeeeEEEEEc----cCCcee--EEEEEE-eCCEEEEE--EeecCCccchhhHHHHHHHhhcceec
Q 026608 167 ADKVASEEKKDDKGQLYYVYEID----GVGSHS--LISVTC-ANNKLYAH--FVNAPTPEWNRDEETLRHVHESFKTV 235 (236)
Q Consensus 167 a~~llsa~~r~~dGktYY~yE~~----~~~rH~--LasvTV-~~GkLYtl--~v~a~ekrW~k~~~~Lr~VvdSF~V~ 235 (236)
+++....+.+|..-|..||. +.+.|. +..+.| .++..|.+ .+++.+.+-....+.++.|++||+|.
T Consensus 84 ---~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~ 158 (161)
T 3lyd_A 84 ---ERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ 158 (161)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred ---eecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence 23334568899999999998 234552 444555 45777777 88889999999999999999999984
No 6
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=46.41 E-value=35 Score=27.87 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.2
Q ss_pred eeeceeeecCCeeeEEEEEc
Q 026608 170 VASEEKKDDKGQLYYVYEID 189 (236)
Q Consensus 170 llsa~~r~~dGktYY~yE~~ 189 (236)
+++.+-...+|+.+|++|+.
T Consensus 131 v~e~eLd~d~G~~vYevei~ 150 (174)
T 4exr_A 131 VKEWSLDKDLDVTFYKIRID 150 (174)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEeCCEEEEEEEEE
Confidence 55666566789999999999
No 7
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=46.05 E-value=64 Score=26.28 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=29.3
Q ss_pred eeeceeeecCCeeeEEEEEccCCceeEEEEEEeCCEEEEEEeec
Q 026608 170 VASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNA 213 (236)
Q Consensus 170 llsa~~r~~dGktYY~yE~~~~~rH~LasvTV~~GkLYtl~v~a 213 (236)
|++.+-...+|+..|++|+...++.+=+-|-...|++.-.....
T Consensus 50 I~~iele~~~G~~vYEVe~~~~g~e~ev~IDA~tG~Vl~~~~e~ 93 (174)
T 4exr_A 50 IVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLEDKTEK 93 (174)
T ss_dssp EEEEEEEEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred EEEEEEEEeCCEEEEEEEEEECCEEEEEEEECCCCcEecccccc
Confidence 55666556789999999998544444455555667777666543
No 8
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=43.99 E-value=82 Score=27.81 Aligned_cols=86 Identities=24% Similarity=0.319 Sum_probs=47.4
Q ss_pred CccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEeecccccCChHHHHHHHHhhccccchhccccccee
Q 026608 92 SAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVA 171 (236)
Q Consensus 92 g~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~s~i~~LG~peevl~~l~~~~~~~~~~i~~a~~ll 171 (236)
|.=|+..+|.+|.|.. -.+--.-|.||..=+-|-.+.--.+-..+| .|-+-+.|..+.-..+-.++.-+-..
T Consensus 11 gaWfs~~yP~~W~EfE-------d~E~sflFynp~~WtGNfRISayk~~~~yg-~~~~~~El~en~sa~~vkvg~~~caY 82 (269)
T 3hlz_A 11 GAWFSMNYPSDWNEFE-------DGEGSFLFYNPDVWTGNFRISAFKGNASYG-KDAIRQELKENDSASLVKIGTWDCAY 82 (269)
T ss_dssp GGCEEEEECTTCEEEC-------CCTTEEEEECSSSCCCEEEEEEEECSTTHH-HHHHHHHHHHCTTCEEEEETTEEEEE
T ss_pred CceeEEecCCCccccc-------CCCCceeeeChhhcccceEEEeccCchhhH-HHHHHHHHhcCCCceEEEeccEeeee
Confidence 3447777799999987 223346788998887776433223433455 24444445433322333333333344
Q ss_pred eceeeecCCeeeEEE
Q 026608 172 SEEKKDDKGQLYYVY 186 (236)
Q Consensus 172 sa~~r~~dGktYY~y 186 (236)
+.+..+.+|. ||+=
T Consensus 83 s~e~F~Eeg~-~yts 96 (269)
T 3hlz_A 83 SKEMFQEEGT-YYTS 96 (269)
T ss_dssp EEEEEEETTE-EEEE
T ss_pred hHhhhhhcCe-eEEE
Confidence 5555566664 5553
No 9
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=33.80 E-value=18 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=16.2
Q ss_pred EeCCEEEEEEeecCCccchhh
Q 026608 201 CANNKLYAHFVNAPTPEWNRD 221 (236)
Q Consensus 201 V~~GkLYtl~v~a~ekrW~k~ 221 (236)
..+|+.|=+++.+.+.+|.+-
T Consensus 19 ~~~G~~YYyN~~T~eS~We~P 39 (41)
T 1ywi_A 19 SPDGRTYYYNTETKQSTWEKP 39 (41)
T ss_dssp ETTTEEEEEETTTTEEEESCC
T ss_pred CCCCCEEEEECCCCCEEeCCC
Confidence 457788888888888888763
No 10
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=32.71 E-value=14 Score=23.36 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=16.3
Q ss_pred EeCCEEEEEEeecCCccchhh
Q 026608 201 CANNKLYAHFVNAPTPEWNRD 221 (236)
Q Consensus 201 V~~GkLYtl~v~a~ekrW~k~ 221 (236)
..+|+.|-+++.+.+.+|.+-
T Consensus 17 ~~~G~~YYyN~~T~eS~We~P 37 (40)
T 2ysi_A 17 TPDGKVYYYNARTRESAWTKP 37 (40)
T ss_dssp CTTSCEEEEETTTCCEESSCC
T ss_pred CCCCCEEEEECCCCCEEeCCC
Confidence 466778888888888888764
No 11
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=30.58 E-value=1.3e+02 Score=22.59 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=29.5
Q ss_pred eecCCeeeEEEEEcc-----------CCceeEEEEEEeCCEEEEEEeecCCc
Q 026608 176 KDDKGQLYYVYEIDG-----------VGSHSLISVTCANNKLYAHFVNAPTP 216 (236)
Q Consensus 176 r~~dGktYY~yE~~~-----------~~rH~LasvTV~~GkLYtl~v~a~ek 216 (236)
-..||+.|+.|.|.+ ...+ ...+-|.+|+.......+|++
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~~~i~~~~G~-~n~ieI~dg~vrv~es~CPdk 62 (101)
T 3ld7_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQ-YNLMEVDGERIRIKEDNSPDQ 62 (101)
T ss_dssp EEETTEEEEEEECTTCBSEEEEEEECSTTC-EEEEEEETTEEEEEEECCSSC
T ss_pred EEECCEEEEEEECCCCCCCEEEEEEcCCCC-EEEEEEECCEEEEEECCCCCc
Confidence 346899999998861 1111 246788999999999998886
No 12
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=28.30 E-value=28 Score=34.56 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=0.0
Q ss_pred cccCCCcchHHHHHHHHHHHhhhcc
Q 026608 31 SLFTPTKQSLTSLLTATLATTTLLT 55 (236)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (236)
.+.+.+.+.|-++.++.|++++++|
T Consensus 15 ~~~~~rr~~~~~~a~~~~~~~~~~~ 39 (638)
T 3sbq_A 15 KLGLSRRGFLGASAVTGAAVAATAL 39 (638)
T ss_dssp -------------------------
T ss_pred ccCcchhhhhchhhhhhhhhhhccc
Confidence 3578888877776665434444444
No 13
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=28.28 E-value=17 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.3
Q ss_pred EeCCEEEEEEeecCCccchhh
Q 026608 201 CANNKLYAHFVNAPTPEWNRD 221 (236)
Q Consensus 201 V~~GkLYtl~v~a~ekrW~k~ 221 (236)
..+|+.|=+++.+.+.+|.+-
T Consensus 13 ~~~G~~YYyN~~T~es~We~P 33 (37)
T 1e0l_A 13 TADGKTYYYNNRTLESTWEKP 33 (37)
T ss_dssp CTTSCEEEEETTTTEEESSCC
T ss_pred CCCCCEEEEECCCCCEEecCC
Confidence 345777777888888888764
No 14
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=27.87 E-value=12 Score=21.85 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=16.2
Q ss_pred EeCCEEEEEEeecCCccchh
Q 026608 201 CANNKLYAHFVNAPTPEWNR 220 (236)
Q Consensus 201 V~~GkLYtl~v~a~ekrW~k 220 (236)
-..||.|=+++.+.+++|.+
T Consensus 7 ~~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp ESSSSEEEEETTTTEEESSC
T ss_pred CCCCCeEEEECCCCCEeccC
Confidence 35688888999999999964
No 15
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=27.44 E-value=45 Score=23.27 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=20.2
Q ss_pred EEEEEEeCCEEEEEEeecCCccchh
Q 026608 196 LISVTCANNKLYAHFVNAPTPEWNR 220 (236)
Q Consensus 196 LasvTV~~GkLYtl~v~a~ekrW~k 220 (236)
-......+||.|-++..+.+.+|.+
T Consensus 48 W~~~~~~~Gr~YyyN~~T~~s~We~ 72 (75)
T 2jxw_A 48 WVEGLSEDGFTYYYNTETGESRWEK 72 (75)
T ss_dssp EEEEEETTTEEEEEETTTTEEESSC
T ss_pred EEEEECCCCCEEEEECcCCCEeccC
Confidence 3444556899999999999999976
No 16
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=26.51 E-value=1.4e+02 Score=22.70 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=29.9
Q ss_pred eecCCeeeEEEEEccCCcee----EEEEEEeCCEEEEEEeecCCc
Q 026608 176 KDDKGQLYYVYEIDGVGSHS----LISVTCANNKLYAHFVNAPTP 216 (236)
Q Consensus 176 r~~dGktYY~yE~~~~~rH~----LasvTV~~GkLYtl~v~a~ek 216 (236)
-..||+.|+.|.|... +.. ...+-+.+|+.......+|++
T Consensus 22 I~vdGk~~~~i~L~~~-~~i~i~g~n~IeI~dg~vrv~es~CPdk 65 (104)
T 4esn_A 22 VTVDGEVYGTYSLAKD-QTIEIQDGNRLRIQNGQAKMEWADCPDQ 65 (104)
T ss_dssp EEETTEEEEEEETTSC-EEEEETTTEEEEEETTEEEEEEECCSSC
T ss_pred EEECCEEEEEEECCCC-cEEEECCcEEEEEECCEEEEEECCCCCc
Confidence 4568999999988731 111 246788999999999998886
No 17
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=24.75 E-value=1.1e+02 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=29.3
Q ss_pred eecCCeeeEEEEEccCC----------ceeEEEEEEeCCEEEEEEeecCCc
Q 026608 176 KDDKGQLYYVYEIDGVG----------SHSLISVTCANNKLYAHFVNAPTP 216 (236)
Q Consensus 176 r~~dGktYY~yE~~~~~----------rH~LasvTV~~GkLYtl~v~a~ek 216 (236)
-..||+.|+.|.|.... ......+-|.+|+.......+|++
T Consensus 12 I~vdGk~~~~i~L~~~~~~~~i~i~~~~G~~n~IeIkdg~vrv~es~CPdk 62 (114)
T 2kpp_A 12 ISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQ 62 (114)
T ss_dssp EEETTEEEEEEECTTCCSEEEEEEEEETTEEEEEEEESSCEEEEEECCSSC
T ss_pred EEECCEEEEEEECCCCCcceEEEEecCCCCEEEEEEECCEEEEEECCCCCe
Confidence 45789999888886211 111345778999999988888886
No 18
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=24.70 E-value=75 Score=21.48 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=20.3
Q ss_pred eeeecCCeeeEEEEEc----------cCCceeEEEEEEe
Q 026608 174 EKKDDKGQLYYVYEID----------GVGSHSLISVTCA 202 (236)
Q Consensus 174 ~~r~~dGktYY~yE~~----------~~~rH~LasvTV~ 202 (236)
--++.||+.||+|--. +...|+++..-+.
T Consensus 15 ll~dddg~q~~e~h~glslsdfev~ygn~~~eiikl~l~ 53 (56)
T 2le2_A 15 LLQDDDGKQYYEYHKGLSLSDFEVLYGNTADEIIKLRLD 53 (56)
T ss_dssp EEECTTSCEEEEEEEEECHHHHHHHHHHSCSCEEEEEEE
T ss_pred EEEcCCCceeeeeecCcccccEEEEeCCChhHeeEEEEE
Confidence 3478999999998654 2346777766543
No 19
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=24.26 E-value=1.2e+02 Score=24.40 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=39.9
Q ss_pred eeceeeecCCeeeEEEEEcc-CCceeE-EEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhcc
Q 026608 171 ASEEKKDDKGQLYYVYEIDG-VGSHSL-ISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESF 232 (236)
Q Consensus 171 lsa~~r~~dGktYY~yE~~~-~~rH~L-asvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF 232 (236)
+.++.-..|.+.|| ||+.. ...|.| |+=++.+|. |--.+..|++-|..-.+.|-.+++=|
T Consensus 82 l~s~~i~~~~k~fy-fDl~~N~RGrFLRIsE~~~~~~-~R~~I~iP~~g~~~Fr~~l~~~~~~~ 143 (146)
T 3k44_A 82 LKSEMMIKDYRRYY-LDLKENARGRFLRVSQTITRGG-PRSQIALPAQGMIEFRDALTDLLEEF 143 (146)
T ss_dssp EEEEEEEETTEEEE-EEEEEETTEEEEEEEEEESSCC-CCEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred ccchheeccCceEE-EEecccCcceEEEEEEeeccCC-CcceEEecHHHHHHHHHHHHHHHHHh
Confidence 34445677899988 89983 333444 333322322 45677789999999999998887755
No 20
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=23.20 E-value=56 Score=24.75 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=26.4
Q ss_pred CCCCceecceeccccCC-CCcceEEeCCCCCCceEEEEEeecccccCChHHHHHHHH
Q 026608 99 VPDGWKERLVSKVEKGT-NGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLA 154 (236)
Q Consensus 99 vP~gW~ev~Vs~~e~g~-~G~Dv~F~d~~~~~enVsvvi~s~i~~LG~peevl~~l~ 154 (236)
+|.||+...+-.....+ .-.|+.|.+|. +. +|=+..||..-|.
T Consensus 24 lP~GW~re~~~R~~G~s~gk~DvYY~sP~-Gk------------kfRSk~ev~ryL~ 67 (97)
T 3c2i_A 24 LPEGWTRKLKQRKSGRSAGKYDVYLINPQ-GK------------AFRSKVELIMYFE 67 (97)
T ss_dssp SCTTCEEEEEECCSSTTTTCEEEEEECTT-SC------------EECSHHHHHHHHH
T ss_pred CCCCCEEEEEEecCCCCCCcceEEEECCC-CC------------EEECHHHHHHHHH
Confidence 69999776553322111 23699999993 32 3567777766653
No 21
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=21.96 E-value=69 Score=22.57 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=25.8
Q ss_pred CCCCceecceeccccCC-CCcceEEeCCCCCCceEEEEEeecccccCChHHHHHHHHh
Q 026608 99 VPDGWKERLVSKVEKGT-NGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLAL 155 (236)
Q Consensus 99 vP~gW~ev~Vs~~e~g~-~G~Dv~F~d~~~~~enVsvvi~s~i~~LG~peevl~~l~~ 155 (236)
+|.||+...+-...... .-.|+.|.+|... +|=+..|+..-|..
T Consensus 6 lp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gk-------------k~RSk~ev~~yL~~ 50 (69)
T 3vxv_A 6 VPCGWERVVKQRLSGKTAGKFDVYFISPQGL-------------KFRSKRSLANYLLK 50 (69)
T ss_dssp SCTTCEEEEEECCSSTTTTCEEEEEECTTSC-------------EECSHHHHHHHHHH
T ss_pred CCCCCEEEEEEeccCCCCCcceEEEEcCCCC-------------EeeCHHHHHHHHHh
Confidence 69999776543211111 1248888887733 35677777665543
Done!