BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026610
MSAGGFTVIDGTQLRSLSQPLALPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKST
ALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGN
EDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAE
GEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDHWKKPFYDC

High Scoring Gene Products

Symbol, full name Information P value
AT5G28830 protein from Arabidopsis thaliana 3.1e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026610
        (236 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2150476 - symbol:AT5G28830 species:3702 "Arabi...   532  3.1e-51   1


>TAIR|locus:2150476 [details] [associations]
            symbol:AT5G28830 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA;ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR002048 InterPro:IPR011992 SMART:SM00054
            EMBL:CP002688 GO:GO:0005509 Gene3D:1.10.238.10 IPI:IPI00517104
            RefSeq:NP_198235.1 UniGene:At.55086 ProteinModelPortal:F4KA19
            PRIDE:F4KA19 EnsemblPlants:AT5G28830.1 GeneID:833001
            KEGG:ath:AT5G28830 OMA:HEKPITI PhylomeDB:F4KA19 Uniprot:F4KA19
        Length = 324

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 113/224 (50%), Positives = 143/224 (63%)

Query:     2 SAGGFTVIDGTQLRSLSQPLALPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTA 61
             +  G T+ DG  LRS+   L LP      VTGAQLL+ +E++ S SL GLSLP +LK TA
Sbjct:     3 NTAGLTIFDGDLLRSID--LNLP-EHQHRVTGAQLLEISESKVSQSLSGLSLPPHLKETA 59

Query:    62 LKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNE 121
             +  +S  D  VTFR   F++  AS+    + + +AD LKD P+VV +LDG MLK+FL +E
Sbjct:    60 ISQVSDGDH-VTFRRTMFNKQQASEKLGVFFSTVADALKDTPIVVSILDGTMLKMFLEDE 118

Query:   122 DDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHXXXX 181
             DDF MLAENLF DLD ED+GK+CK EI+ AL HMGVE GVPP SEFP L+DI+KKH    
Sbjct:   119 DDFAMLAENLFTDLDEEDKGKLCKSEIRKALVHMGVEMGVPPLSEFPILDDIIKKHDADS 178

Query:   182 XXXXXXXXFTELLRQVLQDIVDALADKHXXXXXXXXXXDGSKLR 225
                     F ELL+QVLQ+I D L +K            GS++R
Sbjct:   179 DEELGQAQFAELLQQVLQEIADVLHEKPITIVLNVEIFTGSRIR 222


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       214   0.00085  112 3  11 22  0.39    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.98u 0.13s 18.11t   Elapsed:  00:00:00
  Total cpu time:  17.98u 0.13s 18.11t   Elapsed:  00:00:00
  Start:  Fri May 10 22:10:42 2013   End:  Fri May 10 22:10:42 2013

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