BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026610
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R9V4|ACKA_THETN Acetate kinase OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=ackA PE=3 SV=1
Length = 401
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 164 FSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSK 223
+E +ND L H AEG+E++ + + ++ +Q +++ L DK I +I ++K ID
Sbjct: 30 LAERIGINDSLLTHQAEGKEKVKIQRDMKNHKEAIQLVLEVLVDKEIGVIKDMKEIDAVG 89
Query: 224 LRMDHWKKPFYD 235
R+ H + F D
Sbjct: 90 HRVVHGGEYFTD 101
>sp|Q09MP3|R51A2_HUMAN RAD51-associated protein 2 OS=Homo sapiens GN=RAD51AP2 PE=1 SV=1
Length = 1159
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 41 ENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELK 100
EN SSS+ +S QN S + S D T + +F D SK++S Y+ IA +
Sbjct: 224 ENNISSSVLKISKSQNQPSLEIAKPSYFRDSGTISVPQFPMDLNSKMSSVYLKEIAKKKN 283
Query: 101 D 101
D
Sbjct: 284 D 284
>sp|B0K9Y6|ACKA_THEP3 Acetate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=ackA PE=3 SV=1
Length = 401
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 164 FSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSK 223
+E +ND L H EG++++ + + ++ +Q +++AL DK I I+ ++K ID
Sbjct: 30 LAERIGINDSLLTHQVEGKDKIKIQKDMKNHKEAIQIVLEALVDKEIGILKDMKEIDAVG 89
Query: 224 LRMDHWKKPFYD 235
R+ H + F D
Sbjct: 90 HRVVHGGEFFTD 101
>sp|A8EYU2|PNP_RICCK Polyribonucleotide nucleotidyltransferase OS=Rickettsia canadensis
(strain McKiel) GN=pnp PE=3 SV=1
Length = 747
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPL----VVCVLDGNMLKLFLGNEDDFT 125
DD T + DRD K+ASD I AIA E + + V +LD +LGN+D F
Sbjct: 592 DDGTVSVYAADRDKL-KIASDKIKAIAIEPEIGEIFNGTVTKILDSGAFINYLGNKDGFV 650
Query: 126 MLAENLFADLDT 137
++E +DT
Sbjct: 651 HISEISEERIDT 662
>sp|C3M9X0|META_RHISN Homoserine O-succinyltransferase OS=Rhizobium sp. (strain NGR234)
GN=metA PE=3 SV=1
Length = 307
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 49 FGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCV 108
FG+ QNLK +++ +++G DD + + + + D + ++ ++ + VC+
Sbjct: 165 FGVYRHQNLKPSSV-YLNGFSDDFAVPVSRWTEVRRADI--DRVPSLEILMESKEMGVCL 221
Query: 109 L---DGNMLKLFLGNEDDFTMLAENLFADLD 136
+ GN L +F E D T L++ F D+D
Sbjct: 222 VHEKKGNRLYMFNHVEYDSTSLSDEYFRDVD 252
>sp|P42338|PK3CB_HUMAN Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit
beta isoform OS=Homo sapiens GN=PIK3CB PE=1 SV=1
Length = 1070
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 89 SDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDE-------- 140
S Y+ + LK +P + C L +L+ LGN + + LF L +E
Sbjct: 636 SQYLLQLVQVLKYEPFLDCALSRFLLERALGNRR----IGQFLFWHLRSEVHIPAVSVQF 691
Query: 141 GKVCKGEIQNALGHMGV-EFGVPPFSEFPQLNDILKKHG-----AEGEEELGQAQFTELL 194
G + + + ++GHM V V ++ LN ++K + A+G+E +
Sbjct: 692 GVILEAYCRGSVGHMKVLSKQVEALNKLKTLNSLIKLNAVKLNRAKGKEAMHTCLKQSAY 751
Query: 195 RQVLQDIVDAL 205
R+ L D+ L
Sbjct: 752 REALSDLQSPL 762
>sp|Q3SZ76|COMD3_BOVIN COMM domain-containing protein 3 OS=Bos taurus GN=COMMD3 PE=2 SV=1
Length = 195
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 190 FTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDH 228
FT LLR Q ++DA AD+ ++ P++K ID L+ H
Sbjct: 25 FTLLLRAAFQSLLDAQADEAVLDHPDLKHIDPVVLKHRH 63
>sp|Q9ZD43|PNP_RICPR Polyribonucleotide nucleotidyltransferase OS=Rickettsia prowazekii
(strain Madrid E) GN=pnp PE=3 SV=1
Length = 745
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T I DRD K+A D I AIA E P + + +G ++K+ +LGN+
Sbjct: 592 DDGTVSIYASDRDKI-KIALDKIKAIAVE----PEIGEIFNGTVMKVLDSGAFINYLGNK 646
Query: 122 DDFTMLAENLFADLD 136
D F ++E A +D
Sbjct: 647 DGFVHISEISDARID 661
>sp|Q9UBI1|COMD3_HUMAN COMM domain-containing protein 3 OS=Homo sapiens GN=COMMD3 PE=1
SV=1
Length = 195
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 190 FTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDHWKKPFY 234
FT LLR Q ++DA AD+ ++ P++K ID L+ H Y
Sbjct: 25 FTLLLRAAFQSLLDAQADEAVLDHPDLKHIDPVVLKHCHAAAATY 69
>sp|A8F1P3|PNP_RICM5 Polyribonucleotide nucleotidyltransferase OS=Rickettsia massiliae
(strain Mtu5) GN=pnp PE=3 SV=1
Length = 745
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 64 HISGS----DDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--- 116
ISG+ DD T I DRD K+A D I AIA E P + + +G ++K+
Sbjct: 582 EISGAKIDISDDGTVSIYASDRDKL-KVALDKIKAIAVE----PEIGEIFNGTVMKVLDS 636
Query: 117 -----FLGNEDDFTMLAE 129
+LGN+D F ++E
Sbjct: 637 GAFINYLGNKDGFVHISE 654
>sp|Q12068|GRE2_YEAST NADPH-dependent methylglyoxal reductase GRE2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GRE2 PE=1
SV=1
Length = 342
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 147 EIQNALGHMGVEFGVPP-FSEFPQLNDILKKH--GAEGEEELGQAQFTELLRQVLQDIVD 203
E+ N+L H+ E +P F + + D+ K H + E +GQ R +QD++D
Sbjct: 218 ELVNSLMHLSPEDKIPELFGGYIDVRDVAKAHLVAFQKRETIGQRLIVSEARFTMQDVLD 277
Query: 204 ALADKHIIIIPNIKI 218
L + ++ NI +
Sbjct: 278 ILNEDFPVLKGNIPV 292
>sp|Q1RIG0|PNP_RICBR Polyribonucleotide nucleotidyltransferase OS=Rickettsia bellii
(strain RML369-C) GN=pnp PE=3 SV=1
Length = 744
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T I D+D K+A D + AIA E P + V +G ++K+ +LGN+
Sbjct: 592 DDGTVSIYASDKDKL-KVALDKVKAIAIE----PEIGEVFNGTVMKILDSGAFVNYLGNK 646
Query: 122 DDFTMLAENLFADLDTEDEGKVCK 145
D F ++E A+ E G V K
Sbjct: 647 DGFVHISE--IAEERIESVGSVLK 668
>sp|A8GWV2|PNP_RICB8 Polyribonucleotide nucleotidyltransferase OS=Rickettsia bellii
(strain OSU 85-389) GN=pnp PE=3 SV=1
Length = 744
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 70 DDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKL--------FLGNE 121
DD T I D+D K+A D + AIA E P + V +G ++K+ +LGN+
Sbjct: 592 DDGTVSIYASDKDKL-KVALDKVKAIAIE----PEIGEVFNGTVMKILDSGAFVNYLGNK 646
Query: 122 DDFTMLAENLFADLDTEDEGKVCK 145
D F ++E A+ E G V K
Sbjct: 647 DGFVHISE--IAEERIESVGSVLK 668
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,437,704
Number of Sequences: 539616
Number of extensions: 3741865
Number of successful extensions: 10790
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10779
Number of HSP's gapped (non-prelim): 30
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)