Query 026610
Match_columns 236
No_of_seqs 135 out of 244
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0027 Calmodulin and related 99.9 2.3E-21 5E-26 159.0 13.0 145 9-196 2-149 (151)
2 COG5126 FRQ1 Ca2+-binding prot 99.8 1.8E-20 3.9E-25 156.5 12.5 141 7-195 12-155 (160)
3 PTZ00184 calmodulin; Provision 99.7 7E-17 1.5E-21 128.3 12.3 139 10-195 6-147 (149)
4 PTZ00183 centrin; Provisional 99.7 1E-16 2.2E-21 129.3 12.5 141 9-196 11-154 (158)
5 KOG0031 Myosin regulatory ligh 99.7 9.4E-16 2E-20 126.8 11.9 139 6-195 23-164 (171)
6 KOG0028 Ca2+-binding protein ( 99.6 3.7E-15 8.1E-20 123.9 10.9 138 12-196 30-170 (172)
7 KOG0034 Ca2+/calmodulin-depend 99.5 6E-14 1.3E-18 120.2 11.0 143 7-196 25-175 (187)
8 KOG0037 Ca2+-binding protein, 99.5 3.3E-13 7.1E-18 117.1 13.3 129 16-197 58-189 (221)
9 cd05022 S-100A13 S-100A13: S-1 99.3 1.7E-11 3.6E-16 93.3 8.7 73 127-205 9-84 (89)
10 PF13499 EF-hand_7: EF-hand do 99.3 2.5E-12 5.3E-17 90.7 3.7 65 128-194 2-66 (66)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.3 5.3E-11 1.2E-15 102.5 11.2 138 19-196 30-175 (193)
12 cd05026 S-100Z S-100Z: S-100Z 99.2 4.7E-11 1E-15 91.1 8.2 72 127-200 11-85 (93)
13 KOG0036 Predicted mitochondria 99.2 8.8E-11 1.9E-15 110.1 10.4 144 18-214 17-168 (463)
14 cd05025 S-100A1 S-100A1: S-100 99.1 1.8E-10 3.9E-15 87.1 8.3 72 127-200 10-84 (92)
15 cd05027 S-100B S-100B: S-100B 99.1 2.4E-10 5.2E-15 86.6 8.4 72 127-200 9-83 (88)
16 KOG0030 Myosin essential light 99.1 4.1E-10 8.8E-15 92.1 9.4 140 12-194 8-149 (152)
17 cd05031 S-100A10_like S-100A10 99.1 2.3E-10 4.9E-15 87.0 7.2 71 127-199 9-82 (94)
18 cd05023 S-100A11 S-100A11: S-1 99.1 4.1E-10 8.9E-15 85.5 8.1 72 127-199 10-83 (89)
19 cd00052 EH Eps15 homology doma 99.1 5.8E-10 1.3E-14 77.9 8.1 64 129-200 2-65 (67)
20 cd05029 S-100A6 S-100A6: S-100 99.0 3.2E-09 6.9E-14 80.4 8.5 72 127-201 11-84 (88)
21 KOG4223 Reticulocalbin, calume 99.0 2.1E-09 4.5E-14 98.2 8.7 127 19-191 167-300 (325)
22 smart00027 EH Eps15 homology d 98.9 5.1E-09 1.1E-13 79.7 8.5 73 127-211 11-83 (96)
23 cd00213 S-100 S-100: S-100 dom 98.9 8.3E-09 1.8E-13 76.9 8.5 71 127-199 9-82 (88)
24 KOG0027 Calmodulin and related 98.9 1.8E-08 3.9E-13 82.5 10.8 109 55-198 7-115 (151)
25 PTZ00183 centrin; Provisional 98.8 3.9E-08 8.4E-13 79.1 10.4 102 56-196 17-118 (158)
26 KOG4223 Reticulocalbin, calume 98.8 2.7E-08 5.8E-13 91.0 8.5 148 13-196 75-228 (325)
27 PLN02964 phosphatidylserine de 98.8 3E-08 6.5E-13 98.7 9.6 101 9-154 137-243 (644)
28 PF13833 EF-hand_8: EF-hand do 98.8 2E-08 4.3E-13 68.3 5.6 53 139-196 1-53 (54)
29 cd00252 SPARC_EC SPARC_EC; ext 98.7 4.1E-08 8.8E-13 78.3 7.7 61 125-195 47-107 (116)
30 cd00051 EFh EF-hand, calcium b 98.7 4.7E-08 1E-12 65.0 6.6 61 128-194 2-62 (63)
31 PTZ00184 calmodulin; Provision 98.7 1.5E-07 3.2E-12 74.5 10.2 102 57-197 12-113 (149)
32 KOG0377 Protein serine/threoni 98.7 1.1E-07 2.3E-12 90.4 10.3 149 19-199 468-618 (631)
33 cd05026 S-100Z S-100Z: S-100Z 98.7 4.6E-08 9.9E-13 74.6 6.3 71 13-92 8-83 (93)
34 cd05030 calgranulins Calgranul 98.7 7.7E-08 1.7E-12 72.6 7.2 72 127-200 9-83 (88)
35 cd05029 S-100A6 S-100A6: S-100 98.6 1.2E-07 2.6E-12 71.8 6.8 72 13-94 8-83 (88)
36 cd05022 S-100A13 S-100A13: S-1 98.6 1E-07 2.2E-12 72.6 6.4 70 13-96 6-81 (89)
37 PF13499 EF-hand_7: EF-hand do 98.6 5.7E-08 1.2E-12 68.2 4.5 61 17-87 2-65 (66)
38 KOG0044 Ca2+ sensor (EF-Hand s 98.6 2.2E-07 4.8E-12 80.1 8.7 105 19-154 68-175 (193)
39 smart00027 EH Eps15 homology d 98.5 3.2E-07 6.9E-12 69.8 7.0 66 9-90 4-72 (96)
40 cd05027 S-100B S-100B: S-100B 98.5 2.7E-07 5.8E-12 69.9 6.3 73 13-93 6-82 (88)
41 cd05024 S-100A10 S-100A10: A s 98.5 8E-07 1.7E-11 68.1 8.8 73 128-204 10-84 (91)
42 cd05023 S-100A11 S-100A11: S-1 98.5 4.2E-07 9E-12 69.0 6.8 73 12-91 6-81 (89)
43 cd05025 S-100A1 S-100A1: S-100 98.5 4.9E-07 1.1E-11 68.2 6.5 69 14-92 8-82 (92)
44 KOG0038 Ca2+-binding kinase in 98.4 6.1E-07 1.3E-11 74.5 7.0 103 59-195 74-176 (189)
45 cd00052 EH Eps15 homology doma 98.4 7.4E-07 1.6E-11 62.0 6.5 60 19-94 3-65 (67)
46 COG5126 FRQ1 Ca2+-binding prot 98.4 1.1E-06 2.3E-11 73.8 7.9 66 126-198 20-85 (160)
47 cd05031 S-100A10_like S-100A10 98.3 1.6E-06 3.4E-11 65.8 6.1 68 14-91 7-80 (94)
48 PF13833 EF-hand_8: EF-hand do 98.3 2.5E-06 5.4E-11 57.8 6.1 49 29-90 3-53 (54)
49 KOG0028 Ca2+-binding protein ( 98.3 7.9E-06 1.7E-10 68.5 9.9 102 56-197 33-135 (172)
50 PLN02964 phosphatidylserine de 98.2 9.3E-06 2E-10 81.2 11.7 124 29-197 119-244 (644)
51 PF00036 EF-hand_1: EF hand; 98.2 1.4E-06 3E-11 53.0 3.2 28 169-196 1-28 (29)
52 KOG0041 Predicted Ca2+-binding 98.2 6.9E-06 1.5E-10 71.3 8.8 66 127-198 100-165 (244)
53 cd05030 calgranulins Calgranul 98.2 3.5E-06 7.7E-11 63.5 6.1 69 12-92 5-81 (88)
54 PF00036 EF-hand_1: EF hand; 98.1 3.3E-06 7.2E-11 51.3 3.0 27 128-154 2-28 (29)
55 cd00213 S-100 S-100: S-100 dom 98.1 1.3E-05 2.8E-10 59.6 6.6 70 12-91 5-80 (88)
56 KOG0037 Ca2+-binding protein, 98.0 6.3E-06 1.4E-10 72.0 5.1 84 14-145 123-209 (221)
57 PRK12309 transaldolase/EF-hand 98.0 1.5E-05 3.3E-10 75.5 7.5 61 120-199 328-388 (391)
58 PF14658 EF-hand_9: EF-hand do 98.0 2E-05 4.3E-10 57.0 6.1 62 130-196 2-64 (66)
59 KOG2562 Protein phosphatase 2 98.0 3.5E-05 7.6E-10 73.7 9.3 133 20-192 283-420 (493)
60 KOG2643 Ca2+ binding protein, 98.0 5.6E-05 1.2E-09 72.0 10.3 139 16-195 234-383 (489)
61 cd00252 SPARC_EC SPARC_EC; ext 98.0 1.3E-05 2.7E-10 64.0 5.0 59 13-88 46-106 (116)
62 cd05024 S-100A10 S-100A10: A s 97.9 2.5E-05 5.4E-10 59.8 6.3 73 13-93 6-79 (91)
63 cd00051 EFh EF-hand, calcium b 97.9 1.7E-05 3.7E-10 52.4 4.8 56 18-87 3-61 (63)
64 KOG0034 Ca2+/calmodulin-depend 97.9 4.7E-05 1E-09 65.5 8.4 102 19-155 70-176 (187)
65 PF13405 EF-hand_6: EF-hand do 97.9 1.3E-05 2.8E-10 48.9 3.0 29 128-156 2-31 (31)
66 KOG0036 Predicted mitochondria 97.8 0.00011 2.4E-09 69.6 9.1 76 125-205 13-88 (463)
67 PF12763 EF-hand_4: Cytoskelet 97.8 0.00011 2.4E-09 57.5 7.4 72 127-207 11-82 (104)
68 PF13202 EF-hand_5: EF hand; P 97.7 3.9E-05 8.5E-10 45.0 2.8 25 128-152 1-25 (25)
69 PF13202 EF-hand_5: EF hand; P 97.6 5.5E-05 1.2E-09 44.3 2.7 25 170-194 1-25 (25)
70 KOG4251 Calcium binding protei 97.6 5.9E-05 1.3E-09 67.6 4.0 152 15-194 101-262 (362)
71 KOG4065 Uncharacterized conser 97.6 0.00012 2.7E-09 58.6 4.8 66 128-193 69-142 (144)
72 KOG0031 Myosin regulatory ligh 97.5 0.00032 6.9E-09 58.7 7.4 31 127-157 33-63 (171)
73 PF12763 EF-hand_4: Cytoskelet 97.5 0.00034 7.4E-09 54.7 6.4 76 10-101 5-82 (104)
74 PF10591 SPARC_Ca_bdg: Secrete 97.4 0.00029 6.3E-09 55.7 4.8 102 80-192 8-112 (113)
75 PF14658 EF-hand_9: EF-hand do 97.3 0.00068 1.5E-08 49.0 6.0 59 20-90 3-64 (66)
76 KOG0751 Mitochondrial aspartat 97.3 0.004 8.7E-08 60.6 12.2 145 11-200 32-179 (694)
77 KOG2643 Ca2+ binding protein, 97.2 0.0018 3.9E-08 62.0 8.7 137 23-195 208-345 (489)
78 KOG0030 Myosin essential light 97.2 0.00062 1.3E-08 56.1 4.8 59 13-86 86-147 (152)
79 KOG0040 Ca2+-binding actin-bun 97.2 0.00054 1.2E-08 73.2 5.4 109 10-152 2248-2359(2399)
80 PF13405 EF-hand_6: EF-hand do 97.1 0.00052 1.1E-08 41.7 3.0 27 170-196 2-28 (31)
81 KOG2562 Protein phosphatase 2 97.1 0.0036 7.8E-08 60.3 9.9 153 19-194 143-341 (493)
82 KOG0377 Protein serine/threoni 97.1 0.00083 1.8E-08 64.5 5.3 67 16-91 548-616 (631)
83 KOG0046 Ca2+-binding actin-bun 97.0 0.0016 3.5E-08 63.5 6.9 70 127-200 20-89 (627)
84 KOG0041 Predicted Ca2+-binding 96.9 0.0011 2.3E-08 57.9 4.4 73 12-101 96-171 (244)
85 KOG1029 Endocytic adaptor prot 96.8 0.016 3.5E-07 59.0 12.0 159 20-202 21-263 (1118)
86 PRK12309 transaldolase/EF-hand 96.8 0.0045 9.7E-08 58.9 7.5 59 49-154 327-385 (391)
87 PF14788 EF-hand_10: EF hand; 96.7 0.0041 8.9E-08 42.8 5.2 50 142-197 1-50 (51)
88 smart00054 EFh EF-hand, calciu 96.5 0.003 6.6E-08 35.1 3.0 27 170-196 2-28 (29)
89 KOG4666 Predicted phosphate ac 96.3 0.0041 8.9E-08 57.8 4.1 100 56-195 259-358 (412)
90 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0012 2.7E-08 52.2 0.5 53 18-85 57-111 (113)
91 KOG0046 Ca2+-binding actin-bun 96.2 0.0073 1.6E-07 59.1 5.3 81 9-100 13-95 (627)
92 KOG0040 Ca2+-binding actin-bun 96.2 0.028 6E-07 60.8 9.8 66 128-195 2255-2323(2399)
93 smart00054 EFh EF-hand, calciu 95.7 0.015 3.2E-07 32.2 3.2 27 128-154 2-28 (29)
94 KOG0751 Mitochondrial aspartat 95.5 0.13 2.8E-06 50.5 10.5 152 23-203 83-260 (694)
95 KOG4065 Uncharacterized conser 95.2 0.052 1.1E-06 43.8 5.8 60 19-86 71-141 (144)
96 PF09279 EF-hand_like: Phospho 94.4 0.086 1.9E-06 38.6 4.7 63 128-195 2-68 (83)
97 KOG0038 Ca2+-binding kinase in 93.7 0.12 2.7E-06 43.3 4.9 58 14-84 105-171 (189)
98 KOG4251 Calcium binding protei 92.7 0.36 7.7E-06 43.8 6.5 106 55-192 235-341 (362)
99 KOG1707 Predicted Ras related/ 92.4 0.55 1.2E-05 46.9 8.0 140 13-195 193-342 (625)
100 PF14788 EF-hand_10: EF hand; 91.2 0.75 1.6E-05 31.6 5.3 48 30-90 1-49 (51)
101 KOG4578 Uncharacterized conser 90.8 0.11 2.4E-06 48.5 1.2 105 75-195 293-397 (421)
102 KOG4666 Predicted phosphate ac 89.5 1 2.3E-05 42.2 6.4 96 17-154 261-359 (412)
103 KOG0042 Glycerol-3-phosphate d 88.3 0.69 1.5E-05 46.2 4.7 65 128-198 595-659 (680)
104 PRK09430 djlA Dna-J like membr 87.3 5.7 0.00012 35.9 9.7 108 25-176 67-174 (267)
105 KOG1029 Endocytic adaptor prot 85.8 1.1 2.3E-05 46.4 4.5 69 19-105 199-270 (1118)
106 KOG1955 Ral-GTPase effector RA 85.2 1.5 3.2E-05 43.3 5.0 60 128-195 233-292 (737)
107 KOG3555 Ca2+-binding proteogly 84.7 1.1 2.4E-05 42.2 3.8 59 127-195 251-309 (434)
108 PF14425 Imm3: Immunity protei 84.0 5.9 0.00013 31.8 7.2 93 115-210 18-111 (117)
109 PF05042 Caleosin: Caleosin re 83.7 10 0.00022 32.5 8.9 26 17-43 9-37 (174)
110 KOG3866 DNA-binding protein of 82.6 1.5 3.3E-05 40.9 3.8 63 130-193 248-321 (442)
111 KOG4578 Uncharacterized conser 82.2 0.98 2.1E-05 42.4 2.4 61 61-154 338-398 (421)
112 KOG0998 Synaptic vesicle prote 82.1 1.5 3.2E-05 45.9 3.9 167 12-204 126-353 (847)
113 KOG0169 Phosphoinositide-speci 81.6 12 0.00026 38.6 10.0 127 19-195 140-273 (746)
114 PF05042 Caleosin: Caleosin re 80.3 6.9 0.00015 33.5 6.7 70 127-196 8-124 (174)
115 KOG3555 Ca2+-binding proteogly 79.1 2 4.4E-05 40.6 3.3 53 17-86 252-306 (434)
116 KOG0035 Ca2+-binding actin-bun 78.9 3.1 6.8E-05 43.5 5.0 82 127-209 748-839 (890)
117 cd07313 terB_like_2 tellurium 78.4 11 0.00024 28.2 6.8 88 26-154 12-99 (104)
118 PF05099 TerB: Tellurite resis 78.1 2 4.3E-05 33.9 2.7 98 26-164 36-133 (140)
119 KOG0998 Synaptic vesicle prote 78.0 2.9 6.2E-05 43.8 4.4 158 17-202 13-196 (847)
120 KOG0169 Phosphoinositide-speci 75.9 4.5 9.7E-05 41.6 5.0 65 126-196 136-200 (746)
121 PF08726 EFhand_Ca_insen: Ca2+ 75.8 2.5 5.5E-05 30.7 2.4 27 127-154 7-33 (69)
122 cd07316 terB_like_DjlA N-termi 75.1 24 0.00053 26.2 7.9 89 26-154 12-100 (106)
123 PF14513 DAG_kinase_N: Diacylg 72.2 2.4 5.2E-05 34.9 1.8 77 29-140 6-83 (138)
124 KOG2243 Ca2+ release channel ( 70.6 6.8 0.00015 43.4 4.9 86 130-228 4061-4150(5019)
125 PF09068 EF-hand_2: EF hand; 66.1 33 0.00072 27.6 7.2 86 55-154 40-125 (127)
126 cd07313 terB_like_2 tellurium 65.8 9.3 0.0002 28.6 3.7 53 140-196 13-65 (104)
127 PF08726 EFhand_Ca_insen: Ca2+ 64.8 1.2 2.5E-05 32.5 -1.4 57 15-85 6-64 (69)
128 PF05517 p25-alpha: p25-alpha 62.2 45 0.00097 27.5 7.4 68 129-199 2-72 (154)
129 PRK00117 recX recombination re 61.5 63 0.0014 26.2 8.2 37 31-84 26-63 (157)
130 COG4604 CeuD ABC-type enteroch 60.9 32 0.0007 30.7 6.6 24 195-218 175-198 (252)
131 PLN02952 phosphoinositide phos 54.4 94 0.002 31.6 9.5 64 127-195 39-109 (599)
132 KOG0042 Glycerol-3-phosphate d 53.0 14 0.00031 37.2 3.4 67 11-91 589-658 (680)
133 cd08030 LA_like_plant La-motif 51.9 37 0.00079 26.0 4.8 46 177-226 28-90 (90)
134 PF09069 EF-hand_3: EF-hand; 51.5 57 0.0012 24.9 5.8 67 127-196 4-75 (90)
135 KOG1707 Predicted Ras related/ 51.1 17 0.00037 36.7 3.6 60 125-193 314-374 (625)
136 PF05517 p25-alpha: p25-alpha 50.5 37 0.00081 28.0 5.1 52 29-90 17-69 (154)
137 KOG1955 Ral-GTPase effector RA 49.1 38 0.00082 33.8 5.6 75 13-117 229-306 (737)
138 PF09069 EF-hand_3: EF-hand; 49.0 37 0.00081 25.9 4.5 40 168-209 3-42 (90)
139 PF11061 DUF2862: Protein of u 48.6 13 0.00028 26.7 1.8 33 196-228 15-47 (64)
140 PRK10598 lipoprotein; Provisio 48.4 30 0.00065 29.9 4.3 38 191-228 133-170 (186)
141 PF01023 S_100: S-100/ICaBP ty 46.2 8.6 0.00019 25.3 0.5 29 13-41 4-35 (44)
142 KOG0035 Ca2+-binding actin-bun 41.3 52 0.0011 34.9 5.5 96 13-150 745-848 (890)
143 cd07311 terB_like_1 tellurium 40.4 2.1E+02 0.0046 23.6 8.9 34 25-64 35-68 (150)
144 KOG2243 Ca2+ release channel ( 39.2 47 0.001 37.4 4.8 58 19-90 4061-4120(5019)
145 PF09851 SHOCT: Short C-termin 39.0 35 0.00076 20.6 2.4 17 182-198 14-30 (31)
146 COG4103 Uncharacterized protei 38.3 46 0.00099 27.8 3.7 65 124-195 29-93 (148)
147 KOG4347 GTPase-activating prot 38.2 33 0.00072 35.0 3.4 58 126-190 555-612 (671)
148 COG4103 Uncharacterized protei 37.6 50 0.0011 27.5 3.9 55 25-90 40-94 (148)
149 cd08029 LA_like_fungal La-moti 35.8 49 0.0011 24.4 3.2 46 176-226 26-76 (76)
150 cd00171 Sec7 Sec7 domain; Doma 35.3 2.7E+02 0.0059 23.5 8.9 95 108-210 46-185 (185)
151 cd08032 LARP_7 La RNA-binding 34.2 51 0.0011 24.7 3.2 48 175-226 30-82 (82)
152 PF13362 Toprim_3: Toprim doma 32.6 60 0.0013 23.9 3.4 82 93-179 10-95 (96)
153 KOG3449 60S acidic ribosomal p 32.5 82 0.0018 25.1 4.2 61 127-198 2-62 (112)
154 PF00404 Dockerin_1: Dockerin 32.4 51 0.0011 18.5 2.2 19 178-196 1-19 (21)
155 PF12174 RST: RCD1-SRO-TAF4 (R 32.2 1.1E+02 0.0023 22.2 4.5 34 53-92 22-55 (70)
156 cd08033 LARP_6 La RNA-binding 31.7 1.1E+02 0.0024 22.5 4.6 47 176-226 26-77 (77)
157 KOG4004 Matricellular protein 31.6 24 0.00052 31.2 1.1 96 81-193 141-247 (259)
158 smart00513 SAP Putative DNA-bi 31.3 1.3E+02 0.0027 18.3 4.1 23 142-168 3-25 (35)
159 PF02037 SAP: SAP domain; Int 31.2 1E+02 0.0022 19.0 3.7 24 142-169 3-26 (35)
160 KOG1954 Endocytosis/signaling 30.0 66 0.0014 31.3 3.8 56 127-191 445-500 (532)
161 KOG1176 Acyl-CoA synthetase [L 29.7 68 0.0015 32.0 4.1 115 108-232 384-530 (537)
162 PF13623 SurA_N_2: SurA N-term 28.7 3.3E+02 0.0071 22.3 7.4 24 78-101 48-71 (145)
163 PLN02230 phosphoinositide phos 28.5 2.2E+02 0.0047 29.0 7.4 66 127-196 30-102 (598)
164 smart00222 Sec7 Sec7 domain. D 28.2 3.6E+02 0.0079 22.7 9.3 45 108-154 47-92 (187)
165 PF09279 EF-hand_like: Phospho 27.7 83 0.0018 22.5 3.3 25 170-195 2-26 (83)
166 PRK12792 flhA flagellar biosyn 27.7 7.1E+02 0.015 25.9 11.1 56 168-230 601-664 (694)
167 KOG1954 Endocytosis/signaling 27.5 87 0.0019 30.5 4.2 50 19-84 448-499 (532)
168 PF14513 DAG_kinase_N: Diacylg 27.4 42 0.00092 27.5 1.9 30 169-198 26-62 (138)
169 PF08976 DUF1880: Domain of un 27.2 51 0.0011 26.5 2.2 31 53-89 4-34 (118)
170 PLN02222 phosphoinositide phos 27.0 1.9E+02 0.0042 29.3 6.7 64 127-196 26-90 (581)
171 PF05099 TerB: Tellurite resis 27.0 22 0.00047 27.9 0.1 51 140-194 37-87 (140)
172 PF11116 DUF2624: Protein of u 26.7 2.8E+02 0.006 21.0 6.0 50 29-90 13-62 (85)
173 PRK12720 secretion system appa 26.6 6.7E+02 0.014 26.0 10.5 55 167-230 582-640 (675)
174 TIGR02553 SipD_IpaD_SspD type 26.4 5.4E+02 0.012 24.1 11.6 103 80-195 131-257 (308)
175 cd07176 terB tellurite resista 25.8 86 0.0019 23.2 3.2 56 140-197 16-71 (111)
176 cd03211 GST_C_Metaxin2 GST_C f 25.8 1.6E+02 0.0034 23.0 4.9 41 171-211 39-79 (126)
177 PRK14456 ribosomal RNA large s 25.2 1E+02 0.0022 29.2 4.2 69 143-221 23-91 (368)
178 KOG0039 Ferric reductase, NADH 25.0 1.5E+02 0.0032 30.3 5.6 83 123-206 15-100 (646)
179 KOG2871 Uncharacterized conser 24.9 69 0.0015 30.9 3.0 77 105-191 293-369 (449)
180 PF00690 Cation_ATPase_N: Cati 24.5 2.2E+02 0.0048 19.6 5.0 49 128-177 6-54 (69)
181 cd08028 LARP_3 La RNA-binding 24.2 1.5E+02 0.0032 22.2 4.1 45 177-226 31-82 (82)
182 COG3355 Predicted transcriptio 24.0 3.2E+02 0.0069 22.2 6.3 71 128-207 30-113 (126)
183 PF09184 PPP4R2: PPP4R2; Inte 23.9 3.6E+02 0.0078 24.7 7.4 30 128-158 5-34 (288)
184 PF07273 DUF1439: Protein of u 23.7 1.1E+02 0.0024 25.0 3.7 40 188-228 104-143 (152)
185 PF11848 DUF3368: Domain of un 23.4 1.1E+02 0.0024 20.1 3.0 31 29-65 16-47 (48)
186 PF00085 Thioredoxin: Thioredo 23.1 2.7E+02 0.0059 19.5 5.5 32 81-113 28-59 (103)
187 PF12174 RST: RCD1-SRO-TAF4 (R 23.1 1.1E+02 0.0023 22.2 3.1 31 169-199 26-56 (70)
188 PF10078 DUF2316: Uncharacteri 22.7 1.8E+02 0.0039 22.2 4.4 72 29-113 8-82 (89)
189 PRK14469 ribosomal RNA large s 22.6 1.6E+02 0.0035 27.2 5.0 70 143-222 7-77 (343)
190 PLN02952 phosphoinositide phos 22.3 2.3E+02 0.0051 28.8 6.3 53 139-196 13-65 (599)
191 PF12486 DUF3702: ImpA domain 22.2 60 0.0013 27.0 1.9 40 13-56 67-109 (148)
192 KOG3866 DNA-binding protein of 22.1 1.4E+02 0.0031 28.2 4.4 54 143-201 224-277 (442)
193 PF03979 Sigma70_r1_1: Sigma-7 22.0 1.1E+02 0.0023 22.4 3.0 33 139-179 18-50 (82)
194 TIGR01203 HGPRTase hypoxanthin 22.0 1.7E+02 0.0036 24.2 4.5 35 79-113 3-38 (166)
195 PF12588 PSDC: Phophatidylseri 21.7 2.1E+02 0.0045 23.6 4.9 31 169-199 21-57 (141)
196 PRK14466 ribosomal RNA large s 21.5 1.7E+02 0.0038 27.5 5.0 70 143-222 10-79 (345)
197 PF06226 DUF1007: Protein of u 21.5 1.1E+02 0.0024 26.4 3.4 32 172-203 54-85 (212)
198 PF09373 PMBR: Pseudomurein-bi 21.4 1.6E+02 0.0034 18.0 3.2 29 182-211 2-30 (33)
199 TIGR02675 tape_meas_nterm tape 21.4 2.4E+02 0.0053 20.3 4.7 39 140-195 28-66 (75)
200 PF10281 Ish1: Putative stress 21.4 1.3E+02 0.0028 18.7 2.9 18 143-164 4-21 (38)
201 PRK14459 ribosomal RNA large s 21.4 2E+02 0.0043 27.4 5.4 70 143-222 27-96 (373)
202 KOG4286 Dystrophin-like protei 21.3 8.9E+02 0.019 25.8 10.1 127 53-207 417-543 (966)
203 cd02983 P5_C P5 family, C-term 21.0 2.4E+02 0.0051 22.4 5.1 28 86-113 40-67 (130)
204 PF09312 SurA_N: SurA N-termin 20.8 1.4E+02 0.003 23.1 3.6 48 142-199 66-113 (118)
205 TIGR01398 FlhA flagellar biosy 20.5 9.7E+02 0.021 24.9 12.3 57 167-230 587-649 (678)
206 KOG1265 Phospholipase C [Lipid 20.3 1.1E+03 0.025 25.6 11.6 68 127-194 222-297 (1189)
207 PF09824 ArsR: ArsR transcript 20.2 2.2E+02 0.0048 24.1 4.8 27 186-212 102-138 (160)
No 1
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-21 Score=159.01 Aligned_cols=145 Identities=13% Similarity=0.238 Sum_probs=120.0
Q ss_pred echhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHH
Q 026610 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (236)
Q Consensus 9 ldg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (236)
+..+++..+.++|. +| +++ |+||..||.. +.. +|...++.++..+++++|.+ ++|.|++.||.
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~-------lg~~~t~~el~~~~~~~D~d------g~g~I~~~eF~ 67 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGD-GKISVEELGAVLRS-------LGQNPTEEELRDLIKEIDLD------GDGTIDFEEFL 67 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHH-------cCCCCCHHHHHHHHHHhCCC------CCCeEcHHHHH
Confidence 35678999999999 99 999 9999999999 554 45567899999999999999 79999999998
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCC
Q 026610 86 KLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFS 165 (236)
Q Consensus 86 ~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~ 165 (236)
..+..........- .-...+.+||+.||+|++|+||.+||+.+|.++|...
T Consensus 68 ~l~~~~~~~~~~~~-----------------------~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~------ 118 (151)
T KOG0027|consen 68 DLMEKLGEEKTDEE-----------------------ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL------ 118 (151)
T ss_pred HHHHhhhccccccc-----------------------ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC------
Confidence 87776311111000 1123599999999999999999999999999976432
Q ss_pred ChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 166 EFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 166 ~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
..+.++.|++++|.|+||.|+|+||+++|..
T Consensus 119 ~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 119 TDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2678999999999999999999999999863
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=156.47 Aligned_cols=141 Identities=18% Similarity=0.307 Sum_probs=121.1
Q ss_pred EEechhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHH
Q 026610 7 TVIDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDH 83 (236)
Q Consensus 7 ~ildg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~E 83 (236)
+-++-++|+.++++|. +| |++ |.|++.||.. ++. +|.+.|.+++..+++.+|.+ ++.|+|.|
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~-------lg~~~s~~ei~~l~~~~d~~-------~~~idf~~ 76 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSD-GLIDRNELGKILRS-------LGFNPSEAEINKLFEEIDAG-------NETVDFPE 76 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHH-------cCCCCcHHHHHHHHHhccCC-------CCccCHHH
Confidence 4578899999999999 99 999 9999999999 643 57789999999999999984 89999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCC
Q 026610 84 ASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPP 163 (236)
Q Consensus 84 F~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp 163 (236)
|...|... +++ .-..+ .+..||+.||+|++|+||..||+.++..+|.. +|
T Consensus 77 Fl~~ms~~-------~~~---------------~~~~E-----el~~aF~~fD~d~dG~Is~~eL~~vl~~lge~--~~- 126 (160)
T COG5126 77 FLTVMSVK-------LKR---------------GDKEE-----ELREAFKLFDKDHDGYISIGELRRVLKSLGER--LS- 126 (160)
T ss_pred HHHHHHHH-------hcc---------------CCcHH-----HHHHHHHHhCCCCCceecHHHHHHHHHhhccc--CC-
Confidence 97776652 221 22223 59999999999999999999999999987754 33
Q ss_pred CCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 164 FSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 164 ~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
.+.++.+|+++|.|+||.|+|++|++++.
T Consensus 127 ---deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 127 ---DEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred ---HHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 78999999999999999999999999875
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.72 E-value=7e-17 Score=128.33 Aligned_cols=139 Identities=13% Similarity=0.280 Sum_probs=112.4
Q ss_pred chhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 10 DGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 10 dg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
.-++++.+...|. +| +++ |+||.+|+.. +..+ |.+.+...+..+++.+|.+ ++|.|+|+||..
T Consensus 6 ~~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~------~~g~i~~~ef~~ 71 (149)
T PTZ00184 6 TEEQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSL-------GQNPTEAELQDMINEVDAD------GNGTIDFPEFLT 71 (149)
T ss_pred CHHHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHh-------CCCCCHHHHHHHHHhcCcC------CCCcCcHHHHHH
Confidence 4467888999999 99 999 9999999999 6543 4456677899999999999 699999999966
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCC
Q 026610 87 LASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE 166 (236)
Q Consensus 87 ~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~ 166 (236)
.+... +.. ......+..+|+.+|.+++|+|+++|++.++...+. ++ +
T Consensus 72 ~l~~~-------~~~--------------------~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~----~ 118 (149)
T PTZ00184 72 LMARK-------MKD--------------------TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE--KL----T 118 (149)
T ss_pred HHHHh-------ccC--------------------CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC--CC----C
Confidence 55442 000 012235899999999999999999999999977532 12 2
Q ss_pred hHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 167 FPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 167 ~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
.+.+..+|..+|.+++|.|+|+||..+|.
T Consensus 119 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 119 DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 67899999999999999999999998874
No 4
>PTZ00183 centrin; Provisional
Probab=99.71 E-value=1e-16 Score=129.27 Aligned_cols=141 Identities=11% Similarity=0.246 Sum_probs=114.9
Q ss_pred echhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHH
Q 026610 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (236)
Q Consensus 9 ldg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (236)
+...+++.+...|. +| +++ |+||..|+.. +..+ |..++...+..+++.+|.+ ++|.|+|.||.
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~-------g~~~~~~~~~~l~~~~d~~------~~g~i~~~eF~ 76 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGS-GTIDPKELKVAMRSL-------GFEPKKEEIKQMIADVDKD------GSGKIDFEEFL 76 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHh-------CCCCCHHHHHHHHHHhCCC------CCCcEeHHHHH
Confidence 34678889999999 99 999 9999999999 6543 4557788899999999999 79999999996
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCC
Q 026610 86 KLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFS 165 (236)
Q Consensus 86 ~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~ 165 (236)
..+... ... ......++.+|+.+|++++|+|+..|++.++...+. ++
T Consensus 77 ~~~~~~-------~~~--------------------~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l---- 123 (158)
T PTZ00183 77 DIMTKK-------LGE--------------------RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TI---- 123 (158)
T ss_pred HHHHHH-------hcC--------------------CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CC----
Confidence 654431 111 012235899999999999999999999999977542 12
Q ss_pred ChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 166 EFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 166 ~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
+...+..+|..+|.|++|.|+|+||+.+|+.
T Consensus 124 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 124 TDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3678999999999999999999999998875
No 5
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.66 E-value=9.4e-16 Score=126.80 Aligned_cols=139 Identities=15% Similarity=0.267 Sum_probs=119.6
Q ss_pred eEEechhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHH
Q 026610 6 FTVIDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRD 82 (236)
Q Consensus 6 ~~ildg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~ 82 (236)
...+|-++|++|++.|. +| |+| |.|.++.|+. ++.+| -..++.+++.+|++ ..|+|+|+
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-------k~~~d~elDaM~~E----------a~gPINft 84 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-------KIASDEELDAMMKE----------APGPINFT 84 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-------CCCCHHHHHHHHHh----------CCCCeeHH
Confidence 45788999999999999 99 999 9999999999 88754 45889999999998 68999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCC
Q 026610 83 HASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVP 162 (236)
Q Consensus 83 EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glp 162 (236)
-|+.++-+ .|+.. ++ +..+.+||+.||.+++|+|..+.||+.|..+|..+
T Consensus 85 ~FLTmfGe-------kL~gt-----------------dp---e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~--- 134 (171)
T KOG0031|consen 85 VFLTMFGE-------KLNGT-----------------DP---EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF--- 134 (171)
T ss_pred HHHHHHHH-------HhcCC-----------------CH---HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC---
Confidence 99665544 45441 12 34799999999999999999999999998876543
Q ss_pred CCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 163 PFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 163 p~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
+.+++++|++.+-.|..|.++|.+|+.+++
T Consensus 135 ---~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 135 ---TDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred ---CHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 378999999999999999999999999887
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.7e-15 Score=123.87 Aligned_cols=138 Identities=10% Similarity=0.225 Sum_probs=114.1
Q ss_pred hhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHH
Q 026610 12 TQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (236)
Q Consensus 12 ~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (236)
++.+.....|. +| +++ |+|...||.- +.++ |...+..++..++..+|.+ +.|.|+|++|...+
T Consensus 30 ~q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmral-------GFE~~k~ei~kll~d~dk~------~~g~i~fe~f~~~m 95 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMA-GKIDVEELKVAMRAL-------GFEPKKEEILKLLADVDKE------GSGKITFEDFRRVM 95 (172)
T ss_pred HHHhhHHHHHHhhccCCC-CcccHHHHHHHHHHc-------CCCcchHHHHHHHHhhhhc------cCceechHHHHHHH
Confidence 34566678899 99 999 9999999977 6554 5567888999999999999 69999999997765
Q ss_pred HHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChH
Q 026610 89 SDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFP 168 (236)
Q Consensus 89 ~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~ 168 (236)
-..+. . -...+ .+..+|+.+|-|++|+||..+|+.+..++|..+ +++
T Consensus 96 t~k~~-------e---------------~dt~e-----Ei~~afrl~D~D~~Gkis~~~lkrvakeLgenl------tD~ 142 (172)
T KOG0028|consen 96 TVKLG-------E---------------RDTKE-----EIKKAFRLFDDDKTGKISQRNLKRVAKELGENL------TDE 142 (172)
T ss_pred HHHHh-------c---------------cCcHH-----HHHHHHHcccccCCCCcCHHHHHHHHHHhCccc------cHH
Confidence 54311 1 00122 599999999999999999999999988877543 478
Q ss_pred HHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 169 QLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 169 ~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
.+.+|+.++|.|+||.|+.+||...|++
T Consensus 143 El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 143 ELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999999999875
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.53 E-value=6e-14 Score=120.17 Aligned_cols=143 Identities=14% Similarity=0.207 Sum_probs=109.0
Q ss_pred EEechhhHhhcccccc-CC-C-CCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCc-cCHH
Q 026610 7 TVIDGTQLRSLSQPLA-LP-T-SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKE-FDRD 82 (236)
Q Consensus 7 ~ildg~~i~~l~~~F~-lD-d-~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~-I~~~ 82 (236)
+.++-+||..|..+|. || + ++ |.+|++|+..+.... .....+.|+..++.+ ++|. |++.
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~-g~lt~eef~~i~~~~----------~Np~~~rI~~~f~~~------~~~~~v~F~ 87 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGD-GYLTKEEFLSIPELA----------LNPLADRIIDRFDTD------GNGDPVDFE 87 (187)
T ss_pred cccCHHHHHHHHHHHHHhcccccc-CccCHHHHHHHHHHh----------cCcHHHHHHHHHhcc------CCCCccCHH
Confidence 4467889999999999 99 7 77 999999999954321 122577899999998 5676 9999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCC
Q 026610 83 HASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVP 162 (236)
Q Consensus 83 EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glp 162 (236)
+|...+.-+ ..... -+..++=||+.+|.+++|+|+++|+..++..+-.+ +..
T Consensus 88 ~Fv~~ls~f--------------------------~~~~~-~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~-~~~ 139 (187)
T KOG0034|consen 88 EFVRLLSVF--------------------------SPKAS-KREKLRFAFRVYDLDGDGFISREELKQILRMMVGE-NDD 139 (187)
T ss_pred HHHHHHhhh--------------------------cCCcc-HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc-CCc
Confidence 997765542 00000 01248999999999999999999999999885321 111
Q ss_pred CCCChH----HHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 163 PFSEFP----QLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 163 p~~~~~----~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
- +.+ .++.+|.++|.|+||.|+++||+..+.+
T Consensus 140 ~--~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 140 M--SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred c--hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 1 133 4778899999999999999999998874
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=3.3e-13 Score=117.13 Aligned_cols=129 Identities=12% Similarity=0.152 Sum_probs=110.7
Q ss_pred hcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHH
Q 026610 16 SLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYI 92 (236)
Q Consensus 16 ~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l 92 (236)
.+...|. .| |+. |.|+-+||++ |.+..-+ +....-+.-++.-+|.+ ..|.|++.||.++-+.|
T Consensus 58 ~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~~------~Fs~~TcrlmI~mfd~~------~~G~i~f~EF~~Lw~~i- 123 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRS-GRILAKELQQALSNGTWS------PFSIETCRLMISMFDRD------NSGTIGFKEFKALWKYI- 123 (221)
T ss_pred HHHHHHHhhCcccc-ccccHHHHHHHhhcCCCC------CCCHHHHHHHHHHhcCC------CCCccCHHHHHHHHHHH-
Confidence 4557899 99 999 9999999999 8765544 56677899999999999 79999999997776664
Q ss_pred HHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHH
Q 026610 93 TAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLND 172 (236)
Q Consensus 93 ~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~ 172 (236)
+-++++|+.+|+|+||+|++.||+.||..+| .-++ +..++-
T Consensus 124 ---------------------------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G--y~Ls----pq~~~~ 164 (221)
T KOG0037|consen 124 ---------------------------------NQWRNVFRTYDRDRSGTIDSSELRQALTQLG--YRLS----PQFYNL 164 (221)
T ss_pred ---------------------------------HHHHHHHHhcccCCCCcccHHHHHHHHHHcC--cCCC----HHHHHH
Confidence 1399999999999999999999999999987 3454 678999
Q ss_pred HHHHhcCCCCcccCHHHHHHHHHHH
Q 026610 173 ILKKHGAEGEEELGQAQFTELLRQV 197 (236)
Q Consensus 173 i~~e~D~d~DG~Id~eEF~~lm~~i 197 (236)
+++++|.-++|.|.++.|.+....+
T Consensus 165 lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 165 LVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHhccccCCceeHHHHHHHHHHH
Confidence 9999998889999999999876643
No 9
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.29 E-value=1.7e-11 Score=93.34 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=63.4
Q ss_pred HHHHHHhhhCC-CCCCcccHHHHHHHHhc-cCccCCCCCCCCh-HHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLDT-EDEGKVCKGEIQNALGH-MGVEFGVPPFSEF-PQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVD 203 (236)
Q Consensus 127 ~l~~aF~~~D~-d~sG~IS~~ELr~~l~~-~~~~~Glpp~~~~-~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~ 203 (236)
.+..+|+.||+ +++|+|+++||+.+|.+ +|.. + +. +.+++||+++|.|+||.|+|+||..+|..+..+...
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--l----s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--L----KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--c----cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 48899999999 99999999999999988 5521 2 23 689999999999999999999999999999877766
Q ss_pred Hh
Q 026610 204 AL 205 (236)
Q Consensus 204 ~L 205 (236)
+.
T Consensus 83 ~~ 84 (89)
T cd05022 83 EK 84 (89)
T ss_pred Hh
Confidence 54
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.28 E-value=2.5e-12 Score=90.69 Aligned_cols=65 Identities=18% Similarity=0.473 Sum_probs=54.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELL 194 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm 194 (236)
+..+|+.+|+|++|+||++||+.++..++.. +++....+.++.+|+.+|.|+||.|+++||..+|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRD--MSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH--STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 7899999999999999999999999886532 2211123467888999999999999999999886
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.26 E-value=5.3e-11 Score=102.48 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=100.4
Q ss_pred cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~i 95 (236)
+.++ += +..+|.++.+|.+. ++.. |..+-+..-.+.+++.+|.| ++|.|++.||+..+.-
T Consensus 30 ~~Yr~Fk~~cP~G~~~~~~F~~i~~~~------fp~gd~~~y~~~vF~~fD~~------~dg~i~F~Efi~als~----- 92 (193)
T KOG0044|consen 30 QWYRGFKNECPSGRLTLEEFREIYASF------FPDGDASKYAELVFRTFDKN------KDGTIDFLEFICALSL----- 92 (193)
T ss_pred HHHHHhcccCCCCccCHHHHHHHHHHH------CCCCCHHHHHHHHHHHhccc------CCCCcCHHHHHHHHHH-----
Confidence 4444 44 44349999999999 7653 33355667788899999999 7999999999554443
Q ss_pred HhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCC---CC--CCCChHHH
Q 026610 96 ADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFG---VP--PFSEFPQL 170 (236)
Q Consensus 96 A~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~G---lp--p~~~~~~~ 170 (236)
.++. - .+..+.=+|+.+|.||+|+||+.|+-.++..+-.-.| .| +....+..
T Consensus 93 --~~rG---------------t------~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v 149 (193)
T KOG0044|consen 93 --TSRG---------------T------LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERV 149 (193)
T ss_pred --HcCC---------------c------HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHH
Confidence 2322 1 2223666799999999999999999888866432222 23 11123468
Q ss_pred HHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 171 NDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 171 ~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
+.||+++|.|+||.|+++||..-.+.
T Consensus 150 ~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 150 DKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999999999999999988873
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.22 E-value=4.7e-11 Score=91.08 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=57.8
Q ss_pred HHHHHHhhhC-CCCCC-cccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLD-TEDEG-KVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 127 ~l~~aF~~~D-~d~sG-~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
.+..+|+.|| +||+| +||++||+.+|.+ .+...+-. .+...|++|++++|.|+||.|+|+||..+|..++-+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~--~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQ--KDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccc--cCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3677799999 89998 5999999999976 32211111 135689999999999999999999999999988544
No 13
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.20 E-value=8.8e-11 Score=110.10 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=114.2
Q ss_pred ccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCC-CChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHH
Q 026610 18 SQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLS-LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (236)
Q Consensus 18 ~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~-~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~ 93 (236)
..+|+ || +++ |.++..+|.+ ++.+. .+ .+..-...+++..|.| ++|.+||+||
T Consensus 17 ~~lf~~lD~~~~-g~~d~~~l~k~~~~l~-------~~~~~~~~~~~l~~~~d~~------~dg~vDy~eF--------- 73 (463)
T KOG0036|consen 17 RCLFKELDSKND-GQVDLDQLEKGLEKLD-------HPKPNYEAAKMLFSAMDAN------RDGRVDYSEF--------- 73 (463)
T ss_pred HHHHHHhccCCC-CceeHHHHHHHHHhcC-------CCCCchHHHHHHHHhcccC------cCCcccHHHH---------
Confidence 36799 99 999 9999999999 76532 23 3345566789999999 8999999999
Q ss_pred HHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHH
Q 026610 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDI 173 (236)
Q Consensus 94 ~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i 173 (236)
++|+.+. +..++..|+..|.++||.|...||.+.|..+|++. +++....+
T Consensus 74 ---------------------~~Y~~~~---E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l------~de~~~k~ 123 (463)
T KOG0036|consen 74 ---------------------KRYLDNK---ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL------SDEKAAKF 123 (463)
T ss_pred ---------------------HHHHHHh---HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc------CHHHHHHH
Confidence 3344333 23699999999999999999999999999977653 37788899
Q ss_pred HHHhcCCCCcccCHHHHHHHHH----HHHHHHHHHhccCCeEEee
Q 026610 174 LKKHGAEGEEELGQAQFTELLR----QVLQDIVDALADKHIIIIP 214 (236)
Q Consensus 174 ~~e~D~d~DG~Id~eEF~~lm~----~il~~~a~~L~~~Pv~v~~ 214 (236)
|+-+|.++.+.|+++||+..+. .-+..+-++-+..-++.++
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~~idig 168 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVLLIDIG 168 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhheEEEcc
Confidence 9999999999999999999886 4555555555555555554
No 14
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=1.8e-10 Score=87.08 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=59.8
Q ss_pred HHHHHHhhhC-CCCCC-cccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLD-TEDEG-KVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 127 ~l~~aF~~~D-~d~sG-~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
.+.++|+.|| +|++| +||++||+.+|.. +|...+..| +.+.+++||+++|.|++|.|+|+||..+|..+.-+
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~--s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK--DADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4899999997 99999 5999999999975 554333322 25689999999999999999999999999876543
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.14 E-value=2.4e-10 Score=86.62 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHHhhhC-CCCCC-cccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLD-TEDEG-KVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 127 ~l~~aF~~~D-~d~sG-~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
.+.++|+.|| +||+| +|+++||+.+|.. ++.-.|-++ +.+.++++++++|.|+||.|+|+||..++..++.+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~--~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK--EQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4889999998 89999 5999999999987 110012221 35679999999999999999999999999988754
No 16
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.12 E-value=4.1e-10 Score=92.09 Aligned_cols=140 Identities=15% Similarity=0.282 Sum_probs=107.3
Q ss_pred hhHhhcccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHH
Q 026610 12 TQLRSLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (236)
Q Consensus 12 ~~i~~l~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (236)
+.+.+++++|. +| .+| |+|+.++.-++.+. +|...+..++.+.+.+...+.- .-.-|++++|+-.++
T Consensus 8 d~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRa------lG~nPT~aeV~k~l~~~~~~~~----~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGD-GKISGSQVGDVLRA------LGQNPTNAEVLKVLGQPKRREM----NVKRLDFEEFLPMYQ 76 (152)
T ss_pred chHHHHHHHHHHHhccCc-ccccHHHHHHHHHH------hcCCCcHHHHHHHHcCcccchh----hhhhhhHHHHHHHHH
Confidence 45688999999 99 999 99999999994332 3566778899999999887710 135799999977666
Q ss_pred HHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHH
Q 026610 90 DYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQ 169 (236)
Q Consensus 90 ~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~ 169 (236)
. +|.. ++ .-.++. ..+-.+.||++++|+|...|||.+|..+|..+ +.++
T Consensus 77 ~----vakn-k~-------------------q~t~ed-fvegLrvFDkeg~G~i~~aeLRhvLttlGekl------~eeE 125 (152)
T KOG0030|consen 77 Q----VAKN-KD-------------------QGTYED-FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL------TEEE 125 (152)
T ss_pred H----HHhc-cc-------------------cCcHHH-HHHHHHhhcccCCcceeHHHHHHHHHHHHhhc------cHHH
Confidence 5 4443 11 111222 44567899999999999999999999988654 2678
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHH
Q 026610 170 LNDILKKHGAEGEEELGQAQFTELL 194 (236)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm 194 (236)
++.+++.+ .|.+|-|+|+.|...+
T Consensus 126 Ve~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 126 VEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHccc-cccCCcCcHHHHHHHH
Confidence 89999887 5788999999998765
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.11 E-value=2.3e-10 Score=86.97 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHHHHHhhhCC-CC-CCcccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 127 LAENLFADLDT-ED-EGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 127 ~l~~aF~~~D~-d~-sG~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
.++.+|+.||. || +|+||.+||+.+|.. .|...|.+|. .+.++.|++++|.|++|.|+|+||+.+|...-.
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s--~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD--PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc--HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 58999999997 97 799999999999975 4332343332 568999999999999999999999999986543
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.09 E-value=4.1e-10 Score=85.54 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=57.5
Q ss_pred HHHHHHhh-hCCCCCC-cccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 127 LAENLFAD-LDTEDEG-KVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 127 ~l~~aF~~-~D~d~sG-~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
.+..+|+. +|+||+| +||++||+.+|.+....+. .-..+...|++|++++|.|+||.|+|+||..+|..+.-
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 47899999 8999986 9999999999988421110 00112568999999999999999999999999998854
No 19
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.09 E-value=5.8e-10 Score=77.94 Aligned_cols=64 Identities=20% Similarity=0.420 Sum_probs=56.8
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 129 ENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 129 ~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
+++|+.+|+|++|.||.+|++.+|.+. |++ .+.++.|++.+|.+++|.|+|+||..+|..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~----~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP----RSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC----HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999774 442 6679999999999999999999999999887654
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.97 E-value=3.2e-09 Score=80.44 Aligned_cols=72 Identities=11% Similarity=0.245 Sum_probs=58.9
Q ss_pred HHHHHHhhhCC-CC-CCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLDT-ED-EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDI 201 (236)
Q Consensus 127 ~l~~aF~~~D~-d~-sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~ 201 (236)
.+-++|..+|. || +|+||++||+.+|.+. ..+|.++ +.+.+++|++++|.|++|.|+|+||..+|..++.+-
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~k~--t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~~ 84 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGSKL--QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALIY 84 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCCCC--CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 37789999998 77 8999999999999641 0134332 367899999999999999999999999999887653
No 21
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.1e-09 Score=98.22 Aligned_cols=127 Identities=14% Similarity=0.241 Sum_probs=92.5
Q ss_pred cccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCC---hhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLP---QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~---~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~ 93 (236)
.+|+ -| |+| |.+|++|+....+= . ..| +-.+..-|..+|.| ++|.|++.||
T Consensus 167 ~rFk~AD~d~d-g~lt~EEF~aFLHP--E------e~p~M~~iVi~Etl~d~Dkn------~DG~I~~eEf--------- 222 (325)
T KOG4223|consen 167 ERFKAADQDGD-GSLTLEEFTAFLHP--E------EHPHMKDIVIAETLEDIDKN------GDGKISLEEF--------- 222 (325)
T ss_pred HHHhhcccCCC-CcccHHHHHhccCh--h------hcchHHHHHHHHHHhhcccC------CCCceeHHHH---------
Confidence 7899 99 999 99999999994220 0 111 34678889999999 7999999999
Q ss_pred HHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCC--hHHHH
Q 026610 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE--FPQLN 171 (236)
Q Consensus 94 ~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~--~~~~~ 171 (236)
|++--...+ ++.. ...+..| -.+.|...|+|++|+|+.+||+.-+ +|+-.+ ..+-+
T Consensus 223 -igd~~~~~~------~~~e-peWv~~E------re~F~~~~DknkDG~L~~dEl~~WI--------~P~~~d~A~~EA~ 280 (325)
T KOG4223|consen 223 -IGDLYSHEG------NEEE-PEWVLTE------REQFFEFRDKNKDGKLDGDELLDWI--------LPSEQDHAKAEAR 280 (325)
T ss_pred -HhHHhhccC------CCCC-ccccccc------HHHHHHHhhcCCCCccCHHHHhccc--------CCCCccHHHHHHH
Confidence 555444432 2111 3444455 4577888899999999999999443 332222 23567
Q ss_pred HHHHHhcCCCCcccCHHHHH
Q 026610 172 DILKKHGAEGEEELGQAQFT 191 (236)
Q Consensus 172 ~i~~e~D~d~DG~Id~eEF~ 191 (236)
-++-+.|.|+||+++++|-.
T Consensus 281 hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 281 HLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred HHhhhhccCccccccHHHHh
Confidence 89999999999999999854
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.94 E-value=5.1e-09 Score=79.70 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=61.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhc
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALA 206 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~ 206 (236)
.+..+|+.+|+|++|+||.+|++.+|... |++ .+.++.|++.+|.+++|.|+|+||..+|+.+-... .
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~----~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~----~ 78 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP----QTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL----N 78 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC----HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH----c
Confidence 58999999999999999999999999773 443 56799999999999999999999998877655443 3
Q ss_pred cCCeE
Q 026610 207 DKHII 211 (236)
Q Consensus 207 ~~Pv~ 211 (236)
+.||-
T Consensus 79 g~~~~ 83 (96)
T smart00027 79 GYPIP 83 (96)
T ss_pred CCCCC
Confidence 55554
No 23
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.90 E-value=8.3e-09 Score=76.95 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHhhhCC--CCCCcccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 127 LAENLFADLDT--EDEGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 127 ~l~~aF~~~D~--d~sG~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
.+..+|+.+|+ |++|+||.+||+.++.. +|...+. ..+...++.|++.+|.|++|.|+|+||..+|....-
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~--~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKN--QKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccC--CCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 48889999999 89999999999999975 3321111 113568999999999999999999999999987743
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=1.8e-08 Score=82.54 Aligned_cols=109 Identities=9% Similarity=0.147 Sum_probs=86.3
Q ss_pred hhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhh
Q 026610 55 QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFAD 134 (236)
Q Consensus 55 ~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~ 134 (236)
..++.++++.+|.+ ++|.|+-.|+...|+.. +.. .. +..+..+++.
T Consensus 7 ~~el~~~F~~fD~d------~~G~i~~~el~~~lr~l--------g~~---------------~t-----~~el~~~~~~ 52 (151)
T KOG0027|consen 7 ILELKEAFQLFDKD------GDGKISVEELGAVLRSL--------GQN---------------PT-----EEELRDLIKE 52 (151)
T ss_pred HHHHHHHHHHHCCC------CCCcccHHHHHHHHHHc--------CCC---------------CC-----HHHHHHHHHH
Confidence 34688899999999 79999999998877662 221 11 2369999999
Q ss_pred hCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHH
Q 026610 135 LDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (236)
Q Consensus 135 ~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il 198 (236)
+|.|++|.|+..|+...+.+......... ...+.+.++|+-+|.|+||.|+++|++.+|+..-
T Consensus 53 ~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 53 IDLDGDGTIDFEEFLDLMEKLGEEKTDEE-ASSEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred hCCCCCCeEcHHHHHHHHHhhhccccccc-ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 99999999999999999988543221110 1245899999999999999999999999998653
No 25
>PTZ00183 centrin; Provisional
Probab=98.82 E-value=3.9e-08 Score=79.09 Aligned_cols=102 Identities=8% Similarity=0.084 Sum_probs=79.5
Q ss_pred hHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhh
Q 026610 56 NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADL 135 (236)
Q Consensus 56 ~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~ 135 (236)
.++..++..+|.+ ++|.|++.||...++.+ ++. +. ...+..+|+.+
T Consensus 17 ~~~~~~F~~~D~~------~~G~i~~~e~~~~l~~~------g~~-----------------~~-----~~~~~~l~~~~ 62 (158)
T PTZ00183 17 KEIREAFDLFDTD------GSGTIDPKELKVAMRSL------GFE-----------------PK-----KEEIKQMIADV 62 (158)
T ss_pred HHHHHHHHHhCCC------CCCcccHHHHHHHHHHh------CCC-----------------CC-----HHHHHHHHHHh
Confidence 4567788889999 79999999997776642 110 11 12589999999
Q ss_pred CCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 136 DTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 136 D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
|.+++|.|+..|+..++.... ++......+..+|+.+|.|++|.|+++||+..++.
T Consensus 63 d~~~~g~i~~~eF~~~~~~~~-----~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 63 DKDGSGKIDFEEFLDIMTKKL-----GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred CCCCCCcEeHHHHHHHHHHHh-----cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 999999999999998875521 11112457999999999999999999999999874
No 26
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.7e-08 Score=91.01 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=100.3
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (236)
..+.|..+|. +| ++| |.+|.+||+. ++.+-.. ....+...-+...|.| .+|.|+++||...+-
T Consensus 75 ~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~k~-------~v~~~~~~~~~~~d~~------~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQKK-------YVVEEAARRWDEYDKN------KDGFITWEEYLPQTY 140 (325)
T ss_pred hHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccC------ccceeeHHHhhhhhh
Confidence 4455667899 99 999 9999999999 7654211 1134555666777777 799999999955433
Q ss_pred HHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHH---HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCC
Q 026610 90 DYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTML---AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE 166 (236)
Q Consensus 90 ~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~---l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~ 166 (236)
..-. +.. .. ...-.+ ..|.+. -+..|+.-|.|++|.+|++|+-.+|-. +- .|...
T Consensus 141 ~~~~-----~~~-----~~------~d~e~~-~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHP---Ee--~p~M~ 198 (325)
T KOG4223|consen 141 GRVD-----LPD-----EF------PDEEDN-EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHP---EE--HPHMK 198 (325)
T ss_pred hccc-----Ccc-----cc------ccchhc-HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccCh---hh--cchHH
Confidence 2100 000 01 111112 123332 357899999999999999999977633 11 23333
Q ss_pred hHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 167 FPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 167 ~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
..++.+-+.+.|+||||.|+++||..=|-.
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 567888899999999999999999876653
No 27
>PLN02964 phosphatidylserine decarboxylase
Probab=98.76 E-value=3e-08 Score=98.72 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=77.1
Q ss_pred echhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhH---HHHHHHhhcCCCCCccccCCccCHH
Q 026610 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNL---KSTALKHISGSDDDVTFRIKEFDRD 82 (236)
Q Consensus 9 ldg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~---~~~il~~~d~~~~~~~~~~g~I~~~ 82 (236)
+.-++++++.+.|. +| |+| |++ |.. +..++. ...++.+ +..+++.+|.| ++|.|++.
T Consensus 137 f~~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~------~~pte~e~~fi~~mf~~~D~D------gdG~Idfd 199 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI------EDPVETERSFARRILAIVDYD------EDGQLSFS 199 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC------CCCCHHHHHHHHHHHHHhCCC------CCCeEcHH
Confidence 34678899999999 99 999 997 666 433221 2334444 78999999999 79999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 83 HASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 83 EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
||...|.. +.. -..++ .+..+|+.||+|++|+||.+||+.+|..
T Consensus 200 EFl~lL~~--------lg~---------------~~seE-----EL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 200 EFSDLIKA--------FGN---------------LVAAN-----KKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHH--------hcc---------------CCCHH-----HHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99776653 111 11122 4999999999999999999999999977
No 28
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.75 E-value=2e-08 Score=68.27 Aligned_cols=53 Identities=15% Similarity=0.508 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 139 ~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
++|.||+++|+.+|..+| ++.. +.+.++.+|..+|.|++|.|+|+||+.+|+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g----~~~~-s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG----IKDL-SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT----SSSS-CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC----CCCC-CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999996654 3311 2667999999999999999999999999875
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.73 E-value=4.1e-08 Score=78.25 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 125 TMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 125 ~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
...+.-+|..+|+|+||+||++||+.+. + + | ....++.+|+.+|.|+||.||++||+..+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l----~-~---~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L----D-P---NEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c----c-c---hHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3468999999999999999999999875 1 1 1 145678999999999999999999998873
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=4.7e-08 Score=65.05 Aligned_cols=61 Identities=18% Similarity=0.450 Sum_probs=53.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELL 194 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm 194 (236)
+..+|+.+|.+++|.|+..+++.++..++ .++ +.+.+..+++.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG----EGL--SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC----CCC--CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 67899999999999999999999998754 332 26788999999999999999999998765
No 31
>PTZ00184 calmodulin; Provisional
Probab=98.71 E-value=1.5e-07 Score=74.49 Aligned_cols=102 Identities=8% Similarity=0.133 Sum_probs=77.8
Q ss_pred HHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhC
Q 026610 57 LKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLD 136 (236)
Q Consensus 57 ~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D 136 (236)
.+...+..+|.+ ++|.|+++||...++. ++.. .. +..+..+|+.+|
T Consensus 12 ~~~~~F~~~D~~------~~G~i~~~e~~~~l~~--------~~~~---------------~~-----~~~~~~~~~~~d 57 (149)
T PTZ00184 12 EFKEAFSLFDKD------GDGTITTKELGTVMRS--------LGQN---------------PT-----EAELQDMINEVD 57 (149)
T ss_pred HHHHHHHHHcCC------CCCcCCHHHHHHHHHH--------hCCC---------------CC-----HHHHHHHHHhcC
Confidence 455678888888 7999999999665543 1211 11 125899999999
Q ss_pred CCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHH
Q 026610 137 TEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (236)
Q Consensus 137 ~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~i 197 (236)
.+++|.|+.+++..++.... +.....+.+..+|+.+|.|++|.|+.+||..+++.+
T Consensus 58 ~~~~g~i~~~ef~~~l~~~~-----~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 58 ADGNGTIDFPEFLTLMARKM-----KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred cCCCCcCcHHHHHHHHHHhc-----cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 99999999999998876521 111124578999999999999999999999888753
No 32
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.69 E-value=1.1e-07 Score=90.43 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=103.6
Q ss_pred cccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIA 96 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA 96 (236)
..|+ .| ..+ |+||.+.--.+++ ...|+++|=-.+.+-+.. .+ .+|.+.|-+....++-=-
T Consensus 468 ~eF~~~D~~ks-G~lsis~Wa~~mE-----~i~~L~LPWr~L~~kla~--~s------~d~~v~Y~~~~~~l~~e~---- 529 (631)
T KOG0377|consen 468 DEFRKYDPKKS-GKLSISHWAKCME-----NITGLNLPWRLLRPKLAN--GS------DDGKVEYKSTLDNLDTEV---- 529 (631)
T ss_pred HHHHhcChhhc-CeeeHHHHHHHHH-----HHhcCCCcHHHhhhhccC--CC------cCcceehHhHHHHhhhhh----
Confidence 6799 99 888 9999999988543 256888886555543332 22 367888887755443210
Q ss_pred hhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHH
Q 026610 97 DELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKK 176 (236)
Q Consensus 97 ~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e 176 (236)
|... ...+.+..+-++.. .++.+|+..|+|+||.||.+|.+.+.+-++..+..| -+...+.++-..
T Consensus 530 ------~~~e--a~~slvetLYr~ks----~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~--i~~~~i~~la~~ 595 (631)
T KOG0377|consen 530 ------ILEE--AGSSLVETLYRNKS----SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGA--ISDDEILELARS 595 (631)
T ss_pred ------HHHH--HHhHHHHHHHhchh----hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCC--cCHHHHHHHHHh
Confidence 0000 01112233334443 599999999999999999999999987776543332 235678888889
Q ss_pred hcCCCCcccCHHHHHHHHHHHHH
Q 026610 177 HGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 177 ~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
+|-|+||.||++||.+.++=+-+
T Consensus 596 mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 596 MDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hccCCCCcccHHHHHHHHhhhcc
Confidence 99999999999999998885544
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.68 E-value=4.6e-08 Score=74.56 Aligned_cols=71 Identities=10% Similarity=0.174 Sum_probs=54.8
Q ss_pred hHhhcccccc-CC--CCCCC-cccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 13 QLRSLSQPLA-LP--TSDSS-TVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 13 ~i~~l~~~F~-lD--d~d~G-~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
-|..++.+|+ +| |++ | +||.+||+. +...... .++...++.++..+|+.+|.| ++|.|+|+||.+.
T Consensus 8 a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~--~~~~~~~~~~v~~i~~elD~n------~dG~Idf~EF~~l 78 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTD--FLSSQKDPMLVDKIMNDLDSN------KDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHH--hcccccCHHHHHHHHHHhCCC------CCCCCCHHHHHHH
Confidence 4667788999 88 688 8 699999999 5442111 012234678999999999999 7999999999998
Q ss_pred HHHHH
Q 026610 88 ASDYI 92 (236)
Q Consensus 88 l~~~l 92 (236)
+..++
T Consensus 79 ~~~l~ 83 (93)
T cd05026 79 VAALT 83 (93)
T ss_pred HHHHH
Confidence 88863
No 34
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.67 E-value=7.7e-08 Score=72.57 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=55.8
Q ss_pred HHHHHHhhhCCC--CCCcccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLDTE--DEGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 127 ~l~~aF~~~D~d--~sG~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
.+...|..++.. ++|+||++||+.+|.+ ++.. ++...+.+.+++||+.+|.|+||.|+|+||..+|..++.+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~--~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF--LKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh--hccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 367788888866 5899999999999974 2210 1111225689999999999999999999999999987543
No 35
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.61 E-value=1.2e-07 Score=71.83 Aligned_cols=72 Identities=10% Similarity=0.155 Sum_probs=57.6
Q ss_pred hHhhcccccc-CC--CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP--TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (236)
Q Consensus 13 ~i~~l~~~F~-lD--d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (236)
-|..+.+.|. +| |+++|+||.+||++ +.+. .+ +|..+++.++..+|+.+|.| ++|.|+|+||...+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~---lg~k~t~~ev~~m~~~~D~d------~dG~Idf~EFv~lm 77 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKE-LT---IGSKLQDAEIAKLMEDLDRN------KDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHH-Hh---cCCCCCHHHHHHHHHHhcCC------CCCCCcHHHHHHHH
Confidence 4667778999 88 67459999999999 6421 01 35668899999999999999 79999999999888
Q ss_pred HHHHHH
Q 026610 89 SDYITA 94 (236)
Q Consensus 89 ~~~l~~ 94 (236)
..+..|
T Consensus 78 ~~l~~~ 83 (88)
T cd05029 78 GALALI 83 (88)
T ss_pred HHHHHH
Confidence 876443
No 36
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.61 E-value=1e-07 Score=72.56 Aligned_cols=70 Identities=9% Similarity=0.147 Sum_probs=56.7
Q ss_pred hHhhcccccc-CC--CCCCCcccHHHHHH-HHH-hchhccccCCCCCh-hHHHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 13 QLRSLSQPLA-LP--TSDSSTVTGAQLLD-FAE-NEASSSLFGLSLPQ-NLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 13 ~i~~l~~~F~-lD--d~d~G~is~~EL~~-l~~-~~~~~~~~g~~~~~-~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
-|..|+++|+ +| +++ |+||.+||+. +.. ++ -.+++ .+++.+|+.+|.| ++|.|+|+||..
T Consensus 6 ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-------~~ls~~~~v~~mi~~~D~d------~DG~I~F~EF~~ 71 (89)
T cd05022 6 AIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-------HLLKDVEGLEEKMKNLDVN------QDSKLSFEEFWE 71 (89)
T ss_pred HHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-------hhccCHHHHHHHHHHhCCC------CCCCCcHHHHHH
Confidence 4667889999 99 466 9999999999 544 33 23556 8999999999999 799999999999
Q ss_pred HHHHHHHHHH
Q 026610 87 LASDYITAIA 96 (236)
Q Consensus 87 ~l~~~l~~iA 96 (236)
.+..+..+..
T Consensus 72 l~~~l~~~~~ 81 (89)
T cd05022 72 LIGELAKAVK 81 (89)
T ss_pred HHHHHHHHHH
Confidence 8888655443
No 37
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.60 E-value=5.7e-08 Score=68.22 Aligned_cols=61 Identities=7% Similarity=0.099 Sum_probs=46.2
Q ss_pred cccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 17 l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
|.++|. +| |++ |+||.+||+. +..++.. .....+++.++.+++.+|.| ++|.|+|+||...
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~d------~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLGRD---MSDEESDEMIDQIFREFDTD------GDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTTSH---STHHHHHHHHHHHHHHHTTT------SSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHhCCC------CcCCCcHHHHhcc
Confidence 457899 99 999 9999999999 6664422 00011235677779999999 7999999999654
No 38
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.59 E-value=2.2e-07 Score=80.14 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=79.8
Q ss_pred cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~i 95 (236)
.+|+ +| |+| |+|+..|+.. +... -.+.+++-..-+++.+|.| ++|.|++.|+...++. |
T Consensus 68 ~vF~~fD~~~d-g~i~F~Efi~als~~-------~rGt~eekl~w~F~lyD~d------gdG~It~~Eml~iv~~----i 129 (193)
T KOG0044|consen 68 LVFRTFDKNKD-GTIDFLEFICALSLT-------SRGTLEEKLKWAFRLYDLD------GDGYITKEEMLKIVQA----I 129 (193)
T ss_pred HHHHHhcccCC-CCcCHHHHHHHHHHH-------cCCcHHHHhhhhheeecCC------CCceEcHHHHHHHHHH----H
Confidence 5699 99 999 9999999877 6432 1245566677789999999 7999999999876665 4
Q ss_pred HhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 96 ADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 96 A~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
+..... ...-.++..=+..+..+|+.+|+|++|.||.+|..++...
T Consensus 130 ~~m~~~-------------~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 130 YQMTGS-------------KALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHccc-------------ccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 444433 1111334445668999999999999999999999988754
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.52 E-value=3.2e-07 Score=69.76 Aligned_cols=66 Identities=26% Similarity=0.221 Sum_probs=56.9
Q ss_pred echhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHH
Q 026610 9 IDGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (236)
Q Consensus 9 ldg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (236)
+.-+++..+.+.|. +| |++ |+||.+|++. +.. .++++.++..++..+|.+ ++|.|+|+||.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~---------~~~~~~ev~~i~~~~d~~------~~g~I~~~eF~ 67 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLK---------SGLPQTLLAKIWNLADID------NDGELDKDEFA 67 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHH---------cCCCHHHHHHHHHHhcCC------CCCCcCHHHHH
Confidence 34578999999999 99 999 9999999999 543 246788999999999999 69999999997
Q ss_pred HHHHH
Q 026610 86 KLASD 90 (236)
Q Consensus 86 ~~l~~ 90 (236)
..++.
T Consensus 68 ~~~~~ 72 (96)
T smart00027 68 LAMHL 72 (96)
T ss_pred HHHHH
Confidence 76665
No 40
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.51 E-value=2.7e-07 Score=69.88 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=56.3
Q ss_pred hHhhcccccc-CC--CCCCC-cccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP--TSDSS-TVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (236)
Q Consensus 13 ~i~~l~~~F~-lD--d~d~G-~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (236)
-|..++++|+ +| +++ | +|+.+||+.+++..... ..|...++.++..+|+.+|.| ++|.|+|.||..++
T Consensus 6 ~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~-~lg~~~~~~~v~~~i~~~D~n------~dG~v~f~eF~~li 77 (88)
T cd05027 6 AMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSH-FLEEIKEQEVVDKVMETLDSD------GDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHH-HhcCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHH
Confidence 4677889999 96 788 9 69999999944321110 134456778899999999999 79999999998877
Q ss_pred HHHHH
Q 026610 89 SDYIT 93 (236)
Q Consensus 89 ~~~l~ 93 (236)
..+..
T Consensus 78 ~~~~~ 82 (88)
T cd05027 78 AMVTT 82 (88)
T ss_pred HHHHH
Confidence 77543
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.50 E-value=8e-07 Score=68.07 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=57.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCC--CCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFG--VPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDA 204 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~G--lpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~ 204 (236)
+-..|..+-. +.|++|+.||+..+.+ +++ +....++..+++|++..|.|+||+|||+||..++-.+..+==+.
T Consensus 10 lI~~FhkYaG-~~~tLsk~Elk~Ll~~---Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~~ 84 (91)
T cd05024 10 MMLTFHKFAG-EKNYLNRDDLQKLMEK---EFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACNDY 84 (91)
T ss_pred HHHHHHHHcC-CCCcCCHHHHHHHHHH---HhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 6677888874 4679999999999976 222 22233567899999999999999999999999999986653333
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.49 E-value=4.2e-07 Score=69.02 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=55.0
Q ss_pred hhHhhcccccc--CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHH
Q 026610 12 TQLRSLSQPLA--LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (236)
Q Consensus 12 ~~i~~l~~~F~--lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (236)
..|..+.++|+ .| ++++|+||++||+.+.+-.... +.+....+.++..+|+.+|.| ++|.|+|+||...+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~-~~~~~~~~~~~~~ll~~~D~d------~DG~I~f~EF~~l~ 78 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELAS-FTKNQKDPGVLDRMMKKLDLN------SDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhH-hhcCCCCHHHHHHHHHHcCCC------CCCcCcHHHHHHHH
Confidence 45778889999 56 7884599999999943322110 112345578999999999999 79999999998877
Q ss_pred HHH
Q 026610 89 SDY 91 (236)
Q Consensus 89 ~~~ 91 (236)
..+
T Consensus 79 ~~l 81 (89)
T cd05023 79 GGL 81 (89)
T ss_pred HHH
Confidence 775
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.46 E-value=4.9e-07 Score=68.21 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=54.7
Q ss_pred Hhhcccccc-C-C-CCCCC-cccHHHHHH-HHH-hchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 14 LRSLSQPLA-L-P-TSDSS-TVTGAQLLD-FAE-NEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 14 i~~l~~~F~-l-D-d~d~G-~is~~EL~~-l~~-~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
+..+++.|+ + | +++ | +||..||+. +.. ++.. ++...++.++..+|+.+|.+ ++|.|+|.||...
T Consensus 8 ~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~---~~~~~s~~~v~~i~~~~D~d------~~G~I~f~eF~~l 77 (92)
T cd05025 8 METLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF---LDAQKDADAVDKIMKELDEN------GDGEVDFQEFVVL 77 (92)
T ss_pred HHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH---ccCCCCHHHHHHHHHHHCCC------CCCcCcHHHHHHH
Confidence 456778999 9 5 889 9 599999999 543 4321 33345788999999999999 7999999999888
Q ss_pred HHHHH
Q 026610 88 ASDYI 92 (236)
Q Consensus 88 l~~~l 92 (236)
+..+.
T Consensus 78 ~~~~~ 82 (92)
T cd05025 78 VAALT 82 (92)
T ss_pred HHHHH
Confidence 77753
No 44
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.44 E-value=6.1e-07 Score=74.46 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=79.0
Q ss_pred HHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCC
Q 026610 59 STALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTE 138 (236)
Q Consensus 59 ~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d 138 (236)
+.|...+..| |+|.++++.|+..++- +..+|-.-- .+.=||+..|-|
T Consensus 74 ~ri~e~FSeD------G~GnlsfddFlDmfSV-~sE~APrdl--------------------------K~~YAFkIYDfd 120 (189)
T KOG0038|consen 74 RRICEVFSED------GRGNLSFDDFLDMFSV-FSEMAPRDL--------------------------KAKYAFKIYDFD 120 (189)
T ss_pred HHHHHHhccC------CCCcccHHHHHHHHHH-HHhhChHHh--------------------------hhhheeEEeecC
Confidence 4466677778 7999999999876643 333332211 277899999999
Q ss_pred CCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 139 ~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
++++|..+.|...+.++... ++.+-+..-.++.++.++|-||||+++++||..++.
T Consensus 121 ~D~~i~~~DL~~~l~~lTr~-eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 121 GDEFIGHDDLEKTLTSLTRD-ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred CCCcccHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 99999999999999988753 454222222689999999999999999999998875
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.43 E-value=7.4e-07 Score=62.02 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=51.1
Q ss_pred cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITA 94 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~ 94 (236)
+.|. +| +++ |.||.+|++. +..+ +.++.++..+++.++.+ ++|.|+|.||...++.+..+
T Consensus 3 ~~F~~~D~~~~-G~i~~~el~~~l~~~---------g~~~~~~~~i~~~~d~~------~~g~i~~~ef~~~~~~~~~~ 65 (67)
T cd00052 3 QIFRSLDPDGD-GLISGDEARPFLGKS---------GLPRSVLAQIWDLADTD------KDGKLDKEEFAIAMHLIALA 65 (67)
T ss_pred HHHHHhCCCCC-CcCcHHHHHHHHHHc---------CCCHHHHHHHHHHhcCC------CCCcCCHHHHHHHHHHHHHH
Confidence 5699 99 999 9999999999 6542 35788899999999999 69999999998888776544
No 46
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=73.82 Aligned_cols=66 Identities=20% Similarity=0.385 Sum_probs=56.8
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHH
Q 026610 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (236)
Q Consensus 126 ~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il 198 (236)
..++++|+.||.|++|.|++.+|..++..+| -+|+ ...|..||..+|. |.+.|+|.+|..+|-..+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg----~~~s--~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG----FNPS--EAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC----CCCc--HHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 4699999999999999999999999997643 3333 6689999999999 999999999999887655
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.31 E-value=1.6e-06 Score=65.78 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=53.7
Q ss_pred Hhhcccccc-CC--CC-CCCcccHHHHHH-HHH-hchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 14 LRSLSQPLA-LP--TS-DSSTVTGAQLLD-FAE-NEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 14 i~~l~~~F~-lD--d~-d~G~is~~EL~~-l~~-~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
+..+.+.|. +| |+ + |+||..||+. +.. .+. .+|...++.++..+++.+|.+ ++|.|+|+||.+.
T Consensus 7 ~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~---~lg~~~s~~ei~~~~~~~D~~------~dg~I~f~eF~~l 76 (94)
T cd05031 7 MESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSE---FLKNQKDPMAVDKIMKDLDQN------RDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHH---HhhccccHHHHHHHHHHhCCC------CCCcCcHHHHHHH
Confidence 455678899 97 65 6 9999999999 543 221 134567788999999999999 7999999999887
Q ss_pred HHHH
Q 026610 88 ASDY 91 (236)
Q Consensus 88 l~~~ 91 (236)
+..+
T Consensus 77 ~~~~ 80 (94)
T cd05031 77 VAGL 80 (94)
T ss_pred HHHH
Confidence 7764
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.28 E-value=2.5e-06 Score=57.81 Aligned_cols=49 Identities=8% Similarity=0.155 Sum_probs=43.1
Q ss_pred CcccHHHHHH-HHHhchhccccCCC-CChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 29 STVTGAQLLD-FAENEASSSLFGLS-LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 29 G~is~~EL~~-l~~~~~~~~~~g~~-~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
|.||.+||+. +.. +|.. ++++++..+++.+|.+ ++|.|+|.||.+.|++
T Consensus 3 G~i~~~~~~~~l~~-------~g~~~~s~~e~~~l~~~~D~~------~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSK-------LGIKDLSEEEVDRLFREFDTD------GDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHH-------TTSSSSCHHHHHHHHHHHTTS------SSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHH-------hCCCCCCHHHHHHHHHhcccC------CCCCCCHHHHHHHHHh
Confidence 9999999999 633 4667 8999999999999999 7999999999877654
No 49
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=7.9e-06 Score=68.53 Aligned_cols=102 Identities=12% Similarity=0.198 Sum_probs=79.7
Q ss_pred hHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhh
Q 026610 56 NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADL 135 (236)
Q Consensus 56 ~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~ 135 (236)
.++.+.+..++++ ++|.|+|.|+.-.|+- ..|--+.. .+..+-...
T Consensus 33 q~i~e~f~lfd~~------~~g~iD~~EL~vAmra------------------------lGFE~~k~----ei~kll~d~ 78 (172)
T KOG0028|consen 33 QEIKEAFELFDPD------MAGKIDVEELKVAMRA------------------------LGFEPKKE----EILKLLADV 78 (172)
T ss_pred hhHHHHHHhhccC------CCCcccHHHHHHHHHH------------------------cCCCcchH----HHHHHHHhh
Confidence 4678899999999 7999999999444433 11222222 488899999
Q ss_pred CCCCCCcccHHHHHHHHhc-cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHH
Q 026610 136 DTEDEGKVCKGEIQNALGH-MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (236)
Q Consensus 136 D~d~sG~IS~~ELr~~l~~-~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~i 197 (236)
|++++|+|+-++++..+.. ++.. + +.+.+..+|+.+|-|++|+|++.+|+-++++.
T Consensus 79 dk~~~g~i~fe~f~~~mt~k~~e~-d-----t~eEi~~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 79 DKEGSGKITFEDFRRVMTVKLGER-D-----TKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred hhccCceechHHHHHHHHHHHhcc-C-----cHHHHHHHHHcccccCCCCcCHHHHHHHHHHh
Confidence 9999999999999988654 3321 1 26789999999999999999999999988854
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=98.25 E-value=9.3e-06 Score=81.19 Aligned_cols=124 Identities=11% Similarity=0.189 Sum_probs=86.8
Q ss_pred CcccHHHHHHHHHhchhccccCCCCC-hhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 026610 29 STVTGAQLLDFAENEASSSLFGLSLP-QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVC 107 (236)
Q Consensus 29 G~is~~EL~~l~~~~~~~~~~g~~~~-~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva 107 (236)
.++|+.++..++++-.. .+.-. ..++.+++..+|.| ++|.| ....++. + +.
T Consensus 119 ~~~s~n~lv~~~e~~~t----~f~~kqi~elkeaF~lfD~d------gdG~i----Lg~ilrs----l----G~------ 170 (644)
T PLN02964 119 NRLSKNTLVGYCELDLF----DFVTQEPESACESFDLLDPS------SSNKV----VGSIFVS----C----SI------ 170 (644)
T ss_pred CCCCHHHhhhheeecHh----hccHHHHHHHHHHHHHHCCC------CCCcC----HHHHHHH----h----CC------
Confidence 57788999886653111 11111 24677789999999 68986 2222222 1 10
Q ss_pred EeccchhhhhcCCcchH-HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccC
Q 026610 108 VLDGNMLKLFLGNEDDF-TMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELG 186 (236)
Q Consensus 108 ~ldgs~l~~~l~de~~f-~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id 186 (236)
.++..- ...+..+|+.+|.|++|.|+.+|+..++..++. +. ..+.+.++|+.+|.|++|.|+
T Consensus 171 -----------~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~----seEEL~eaFk~fDkDgdG~Is 233 (644)
T PLN02964 171 -----------EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LV----AANKKEELFKAADLNGDGVVT 233 (644)
T ss_pred -----------CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CC----CHHHHHHHHHHhCCCCCCcCC
Confidence 011111 124899999999999999999999999987542 11 256799999999999999999
Q ss_pred HHHHHHHHHHH
Q 026610 187 QAQFTELLRQV 197 (236)
Q Consensus 187 ~eEF~~lm~~i 197 (236)
++||+.+|+..
T Consensus 234 ~dEL~~vL~~~ 244 (644)
T PLN02964 234 IDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHhc
Confidence 99999998873
No 51
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.22 E-value=1.4e-06 Score=53.04 Aligned_cols=28 Identities=14% Similarity=0.582 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 169 QLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 169 ~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
.++++|+.+|.|+||.|+++||+.+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3689999999999999999999999986
No 52
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.22 E-value=6.9e-06 Score=71.32 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=56.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il 198 (236)
.+..+|+..|.|.||+|+-.||+..|+++| .|- +.=-..+|++++|.|.||+|+|.||.-.+++.+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg----apQ--THL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLG----APQ--THLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhC----Cch--hhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 488999999999999999999999999964 431 122478999999999999999999998888654
No 53
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.21 E-value=3.5e-06 Score=63.47 Aligned_cols=69 Identities=6% Similarity=0.051 Sum_probs=54.1
Q ss_pred hhHhhcccccc-CC--CCCCCcccHHHHHH-HHHhchhccccCCCCC----hhHHHHHHHhhcCCCCCccccCCccCHHH
Q 026610 12 TQLRSLSQPLA-LP--TSDSSTVTGAQLLD-FAENEASSSLFGLSLP----QNLKSTALKHISGSDDDVTFRIKEFDRDH 83 (236)
Q Consensus 12 ~~i~~l~~~F~-lD--d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~----~~~~~~il~~~d~~~~~~~~~~g~I~~~E 83 (236)
+-|..+...|. .+ ++++|+||.+||+. +... +|..++ +.++..+++.+|.+ ++|.|+|+|
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~------~g~~~t~~~~~~~v~~i~~~~D~d------~dG~I~f~e 72 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE------LPNFLKKEKNQKAIDKIFEDLDTN------QDGQLSFEE 72 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHH------hhHhhccCCCHHHHHHHHHHcCCC------CCCcCcHHH
Confidence 34677788899 88 44459999999999 5432 222344 78999999999999 799999999
Q ss_pred HHHHHHHHH
Q 026610 84 ASKLASDYI 92 (236)
Q Consensus 84 F~~~l~~~l 92 (236)
|...+..++
T Consensus 73 F~~~~~~~~ 81 (88)
T cd05030 73 FLVLVIKVG 81 (88)
T ss_pred HHHHHHHHH
Confidence 998888763
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.08 E-value=3.3e-06 Score=51.33 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=25.4
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
++.+|+.+|+|+||+||.+|++.++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999865
No 55
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.07 E-value=1.3e-05 Score=59.60 Aligned_cols=70 Identities=7% Similarity=0.069 Sum_probs=54.6
Q ss_pred hhHhhcccccc-CC-C--CCCCcccHHHHHH-HHH-hchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHH
Q 026610 12 TQLRSLSQPLA-LP-T--SDSSTVTGAQLLD-FAE-NEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (236)
Q Consensus 12 ~~i~~l~~~F~-lD-d--~d~G~is~~EL~~-l~~-~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (236)
.++..+.++|. +| . ++ |.||.+||+. +.. ++.. ++.+.+..++..+++.+|.+ ++|.|+|+||.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~~---~~~~~~~~ei~~i~~~~d~~------~~g~I~f~eF~ 74 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPNF---LKNQKDPEAVDKIMKDLDVN------KDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhhh---ccCCCCHHHHHHHHHHhccC------CCCcCcHHHHH
Confidence 57888899999 99 3 77 9999999999 543 2211 11223478899999999999 79999999998
Q ss_pred HHHHHH
Q 026610 86 KLASDY 91 (236)
Q Consensus 86 ~~l~~~ 91 (236)
..+...
T Consensus 75 ~~~~~~ 80 (88)
T cd00213 75 VLIGKL 80 (88)
T ss_pred HHHHHH
Confidence 877764
No 56
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.04 E-value=6.3e-06 Score=72.05 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=68.3
Q ss_pred Hhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 14 LRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 14 i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
|..-+++|+ .| |++ |+|+..||++ |..+ |..+|++.++-+++++|.- ++|.|.+.+|.+..-.
T Consensus 123 i~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~-------Gy~Lspq~~~~lv~kyd~~------~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRS-GTIDSSELRQALTQL-------GYRLSPQFYNLLVRKYDRF------GGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHhcccCCC-CcccHHHHHHHHHHc-------CcCCCHHHHHHHHHHhccc------cCCceeHHHHHHHHHH
Confidence 334449999 99 999 9999999999 8775 5569999999999999977 5899999999443322
Q ss_pred HHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccH
Q 026610 91 YITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCK 145 (236)
Q Consensus 91 ~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~ 145 (236)
- . .+-.+|+.+|++..|.|+.
T Consensus 189 ----------L-------------------~-----~lt~~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 189 ----------L-------------------Q-----RLTEAFRRRDTAQQGSITI 209 (221)
T ss_pred ----------H-------------------H-----HHHHHHHHhccccceeEEE
Confidence 1 1 3778999999999998754
No 57
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.01 E-value=1.5e-05 Score=75.54 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=52.2
Q ss_pred CcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 120 NEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 120 de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
.-..|+..+..+|+.+|.|++|+|+.+|+.. .+.+|+.+|.|+||.|+++||...++....
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 3345777899999999999999999999831 367899999999999999999999886653
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=98.00 E-value=2e-05 Score=56.99 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=54.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCC-cccCHHHHHHHHHH
Q 026610 130 NLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGE-EELGQAQFTELLRQ 196 (236)
Q Consensus 130 ~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~D-G~Id~eEF~~lm~~ 196 (236)
.+|..||.++.|.+....|...|..++.. .| ..+.++.+.++.|+++. |.|+++.|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~--~p---~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR--SP---EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC--CC---cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999887631 22 25689999999999998 99999999999986
No 59
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.98 E-value=3.5e-05 Score=73.75 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=96.2
Q ss_pred ccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHh
Q 026610 20 PLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIAD 97 (236)
Q Consensus 20 ~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~ 97 (236)
.|- || |+| |.|++++|..+.. --++.-.++.|+.++..+- ..-.+|.+||.+|.-.+ +|.
T Consensus 283 kFweLD~Dhd-~lidk~~L~ry~d---------~tlt~~ivdRIFs~v~r~~--~~~~eGrmdykdFv~Fi------lA~ 344 (493)
T KOG2562|consen 283 KFWELDTDHD-GLIDKEDLKRYGD---------HTLTERIVDRIFSQVPRGF--TVKVEGRMDYKDFVDFI------LAE 344 (493)
T ss_pred HHhhhccccc-cccCHHHHHHHhc---------cchhhHHHHHHHhhccccc--eeeecCcccHHHHHHHH------HHh
Confidence 377 99 999 9999999999743 1245778999999665442 11258899999994422 333
Q ss_pred hcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCc---cCCCCCCCChHHHHHHH
Q 026610 98 ELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGV---EFGVPPFSEFPQLNDIL 174 (236)
Q Consensus 98 ~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~---~~Glpp~~~~~~~~~i~ 174 (236)
+-++.| ..++=.|+-+|.+++|.|+..||+-+.+.... .+|..|..=.....+|+
T Consensus 345 e~k~t~----------------------~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~ 402 (493)
T KOG2562|consen 345 EDKDTP----------------------ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIR 402 (493)
T ss_pred ccCCCc----------------------cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 333322 24899999999999999999999988765321 23443332234678899
Q ss_pred HHhcCCCCcccCHHHHHH
Q 026610 175 KKHGAEGEEELGQAQFTE 192 (236)
Q Consensus 175 ~e~D~d~DG~Id~eEF~~ 192 (236)
..+.+-..++|+.++|+.
T Consensus 403 DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 403 DMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHhCccCCCceeHHHHhh
Confidence 999877889999999986
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.96 E-value=5.6e-05 Score=72.01 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=96.9
Q ss_pred hcccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCC---------hhHHHHHHHhhcCCCCCccccCCccCHHHH
Q 026610 16 SLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLP---------QNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (236)
Q Consensus 16 ~l~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~---------~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (236)
.+.=.|+ +| |++ |-|+++|+..++.+-.+...+|+... ..++...+...-.+.+ +++++++.||
T Consensus 234 ~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~r----g~~kLs~deF 308 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKR----GNGKLSIDEF 308 (489)
T ss_pred cceeeeeeeecCCC-CcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccC----CCccccHHHH
Confidence 3446799 99 999 99999999997766555555665322 2355555555544322 7999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCC
Q 026610 85 SKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPF 164 (236)
Q Consensus 85 ~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~ 164 (236)
.+-++.. ..| .++-=|..+|+..+|.||.......|-... +++--
T Consensus 309 ~~F~e~L---------------------------q~E-----il~lEF~~~~~~~~g~Ise~DFA~~lL~~a---~~n~~ 353 (489)
T KOG2643|consen 309 LKFQENL---------------------------QEE-----ILELEFERFDKGDSGAISEVDFAELLLAYA---GVNSK 353 (489)
T ss_pred HHHHHHH---------------------------HHH-----HHHHHHHHhCcccccccCHHHHHHHHHHHc---ccchH
Confidence 7755552 222 466779999999999999999998875532 23211
Q ss_pred CChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 165 SEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 165 ~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
.-...+.++-++++.+ +-.|+++||++..+
T Consensus 354 ~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 354 KKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred hHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 0112567777888776 67799999998776
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.96 E-value=1.3e-05 Score=63.97 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=48.4
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (236)
.+..+.-.|. +| |+| |.||++||.++. +..+++.+.++++.+|.| ++|.|+++||..-+
T Consensus 46 ~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~----------l~~~e~~~~~f~~~~D~n------~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYD-GKLSHHELAPIR----------LDPNEHCIKPFFESCDLD------KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCC-CcCCHHHHHHHH----------ccchHHHHHHHHHHHCCC------CCCCCCHHHHHHHH
Confidence 3445667899 99 999 999999999953 134567889999999999 79999999995544
No 62
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.95 E-value=2.5e-05 Score=59.85 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=54.1
Q ss_pred hHhhcccccc-CCCCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHH
Q 026610 13 QLRSLSQPLA-LPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (236)
Q Consensus 13 ~i~~l~~~F~-lDd~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~ 91 (236)
-|..+..+|. .- +++|+||+.||++|.+..... .++-..-+..++.+|+.+|.| +||+|+|.||..++-.+
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~-~l~~~~d~~~vd~im~~LD~n------~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSE-FLKNQNDPMAVDKIMKDLDDC------RDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHH-HHcCCCCHHHHHHHHHHhCCC------CCCcCcHHHHHHHHHHH
Confidence 4566778888 77 555899999999965433221 122233467899999999999 79999999998888776
Q ss_pred HH
Q 026610 92 IT 93 (236)
Q Consensus 92 l~ 93 (236)
..
T Consensus 78 ~~ 79 (91)
T cd05024 78 LI 79 (91)
T ss_pred HH
Confidence 43
No 63
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.94 E-value=1.7e-05 Score=52.44 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=47.5
Q ss_pred ccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 18 SQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 18 ~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
..+|. +| +++ |.|+.+|++. +..+ |.+.+...+..++..++.+ ++|.|+|.||...
T Consensus 3 ~~~f~~~d~~~~-g~l~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~~~~------~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGD-GTISADELKAALKSL-------GEGLSEEEIDEMIREVDKD------GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCC-CcCcHHHHHHHHHHh-------CCCCCHHHHHHHHHHhCCC------CCCeEeHHHHHHH
Confidence 45689 99 999 9999999999 6543 4567888999999999999 6999999999553
No 64
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.93 E-value=4.7e-05 Score=65.49 Aligned_cols=102 Identities=10% Similarity=0.186 Sum_probs=75.8
Q ss_pred cccc-CC-CCCCCc-ccHHHHHH-HHHhchhccccCCCCCh-hHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSST-VTGAQLLD-FAENEASSSLFGLSLPQ-NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (236)
Q Consensus 19 ~~F~-lD-d~d~G~-is~~EL~~-l~~~~~~~~~~g~~~~~-~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~ 93 (236)
+++. ++ +++ |. |+..|... +.. |-...+. .-..-+++-+|.+ ++|.|+.+|+.+.++.++.
T Consensus 70 rI~~~f~~~~~-~~~v~F~~Fv~~ls~-------f~~~~~~~~Kl~faF~vYD~~------~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 70 RIIDRFDTDGN-GDPVDFEEFVRLLSV-------FSPKASKREKLRFAFRVYDLD------GDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHhccCC-CCccCHHHHHHHHhh-------hcCCccHHHHHHHHHHHhcCC------CCCcCcHHHHHHHHHHHHc
Confidence 6677 77 777 66 99999999 643 2222333 3677799999999 7999999999887776411
Q ss_pred HHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 026610 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHM 155 (236)
Q Consensus 94 ~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~ 155 (236)
+ . ... . +...+..++.+|.++|.|++|+||.+|.+.++.+.
T Consensus 136 ~---~---------------~~~--~-~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 136 E---N---------------DDM--S-DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred c---C---------------Ccc--h-HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 0 0 000 1 22356689999999999999999999999999773
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.88 E-value=1.3e-05 Score=48.86 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.4
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHh-ccC
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALG-HMG 156 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~-~~~ 156 (236)
++.+|+.+|+|++|+||.+|++.+|. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 78999999999999999999999998 443
No 66
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.79 E-value=0.00011 Score=69.60 Aligned_cols=76 Identities=14% Similarity=0.329 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHH
Q 026610 125 TMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDA 204 (236)
Q Consensus 125 ~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~ 204 (236)
+..+...|+.||.+++|+++.++|.++|.++. .| ....+....+|...|.|.||.+||+||+..+..-=+..++.
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHH
Confidence 34689999999999999999999999998864 33 11245678999999999999999999999998655555444
Q ss_pred h
Q 026610 205 L 205 (236)
Q Consensus 205 L 205 (236)
.
T Consensus 88 F 88 (463)
T KOG0036|consen 88 F 88 (463)
T ss_pred H
Confidence 3
No 67
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.77 E-value=0.00011 Score=57.52 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=60.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhc
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALA 206 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~ 206 (236)
.-+++|+.+|. ++|+||-+..+.+|.+ .|+| .+.+..|..-+|.|+||.++++||+-.|+=|-..+...+.
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~----S~L~----~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~ 81 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMK----SGLP----RDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNGK 81 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHH----TTSS----HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHH----cCCC----HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCCC
Confidence 47889999985 6899999999999987 5776 7889999999999999999999999999987766654443
Q ss_pred c
Q 026610 207 D 207 (236)
Q Consensus 207 ~ 207 (236)
.
T Consensus 82 ~ 82 (104)
T PF12763_consen 82 P 82 (104)
T ss_dssp -
T ss_pred C
Confidence 3
No 68
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.69 E-value=3.9e-05 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNAL 152 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l 152 (236)
++++|+.+|+|+||+||.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999999753
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.61 E-value=5.5e-05 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHH
Q 026610 170 LNDILKKHGAEGEEELGQAQFTELL 194 (236)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm 194 (236)
++.+|+.+|.|+||.|+++||.++|
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999875
No 70
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.60 E-value=5.9e-05 Score=67.55 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=87.0
Q ss_pred hhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHH
Q 026610 15 RSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (236)
Q Consensus 15 ~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~ 91 (236)
|.|..+|+ .| |-| |+||..|+++ +++-.+. ||- -+.++-.--+..+|.| ++|.|+++||.-.+...
T Consensus 101 rklmviFsKvDVNtD-rkisAkEmqrwImektaE--Hfq--eameeSkthFraVDpd------gDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTAE--HFQ--EAMEESKTHFRAVDPD------GDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHhhcccCcc-ccccHHHHHHHHHHHHHH--HHH--HHHhhhhhheeeeCCC------CCCceehhhhhhHHHhh
Confidence 45668899 99 999 9999999999 7654322 111 1122333356677888 79999999996554211
Q ss_pred ------HHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCC-CcccHHHHHHHHhccCccCCCCCC
Q 026610 92 ------ITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDE-GKVCKGEIQNALGHMGVEFGVPPF 164 (236)
Q Consensus 92 ------l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~s-G~IS~~ELr~~l~~~~~~~Glpp~ 164 (236)
=.+.|-.+.+.. .+|.. .+.|...+...+-+.|...- =.+|..|.-.+|-.--...++
T Consensus 170 kghsekevadairlneel----kVDeE--------tqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmL--- 234 (362)
T KOG4251|consen 170 KGHSEKEVADAIRLNEEL----KVDEE--------TQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGML--- 234 (362)
T ss_pred cCcchHHHHHHhhccCcc----cccHH--------HHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhH---
Confidence 002222333210 11211 22233333444444444332 224456666555221111111
Q ss_pred CChHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 026610 165 SEFPQLNDILKKHGAEGEEELGQAQFTELL 194 (236)
Q Consensus 165 ~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm 194 (236)
...+++|+...|.|||..++..||..+.
T Consensus 235 --rfmVkeivrdlDqdgDkqlSvpeFislp 262 (362)
T KOG4251|consen 235 --RFMVKEIVRDLDQDGDKQLSVPEFISLP 262 (362)
T ss_pred --HHHHHHHHHHhccCCCeeecchhhhcCC
Confidence 2357889999999999999999998653
No 71
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00012 Score=58.60 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=51.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCc--cCCC--CCCCChH----HHHHHHHHhcCCCCcccCHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGV--EFGV--PPFSEFP----QLNDILKKHGAEGEEELGQAQFTEL 193 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~--~~Gl--pp~~~~~----~~~~i~~e~D~d~DG~Id~eEF~~l 193 (236)
--..|++.|-|++|+|.-=||-.|+...-. +.|- ||.++.. .++.+++.-|.|+||-|||.||.+-
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 456899999999999999999999977543 2332 3443332 5788899999999999999999863
No 72
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.55 E-value=0.00032 Score=58.74 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCc
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGV 157 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~ 157 (236)
..++||...|.|++|.|.++.||..|.++|.
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk 63 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGK 63 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCC
Confidence 5899999999999999999999999999874
No 73
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.48 E-value=0.00034 Score=54.74 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=62.1
Q ss_pred chhhHhhcccccc-CCCCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 10 DGTQLRSLSQPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 10 dg~~i~~l~~~F~-lDd~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
.-+|...+.+.|. ++.++ |.||.++.++ ++++ ++|...+..|-+-.|.+ ++|.++.+||.-.
T Consensus 5 s~~e~~~y~~~F~~l~~~~-g~isg~~a~~~f~~S---------~L~~~~L~~IW~LaD~~------~dG~L~~~EF~iA 68 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDPQD-GKISGDQAREFFMKS---------GLPRDVLAQIWNLADID------NDGKLDFEEFAIA 68 (104)
T ss_dssp SCCHHHHHHHHHHCTSSST-TEEEHHHHHHHHHHT---------TSSHHHHHHHHHHH-SS------SSSEEEHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC-CeEeHHHHHHHHHHc---------CCCHHHHHHHHhhhcCC------CCCcCCHHHHHHH
Confidence 4567888889999 99778 9999999999 8764 58899999999999999 7999999999888
Q ss_pred HHHHHHHHHhhcCC
Q 026610 88 ASDYITAIADELKD 101 (236)
Q Consensus 88 l~~~l~~iA~~L~~ 101 (236)
|+-|-..++-....
T Consensus 69 m~Li~~~~~~~~~~ 82 (104)
T PF12763_consen 69 MHLINRKLNGNGKP 82 (104)
T ss_dssp HHHHHHHHHHTTS-
T ss_pred HHHHHHHhcCCCCC
Confidence 88765555544433
No 74
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.37 E-value=0.00029 Score=55.75 Aligned_cols=102 Identities=9% Similarity=0.154 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccc---hhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC
Q 026610 80 DRDHASKLASDYITAIADELKDDPLVVCVLDGN---MLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMG 156 (236)
Q Consensus 80 ~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs---~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~ 156 (236)
..++|..-|++.+..+...+...+..- +.. ..+........-...+.=.|.++|.|+||.|++.||+.+...+
T Consensus 8 e~~~F~~RL~dWf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l- 83 (113)
T PF10591_consen 8 ELSQFPRRLLDWFKNLMEQSKSRDELS---DHYIELLKRDESSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL- 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC---SS-HHHHHHHHHHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc---cccccccccccccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-
Confidence 356777777777666654443321110 000 0011122222334567788999999999999999999765432
Q ss_pred ccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHH
Q 026610 157 VEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTE 192 (236)
Q Consensus 157 ~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~ 192 (236)
+| + ..=+...++..|.|+||.|+..|+..
T Consensus 84 ----~~-~--e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 84 ----MP-P--EHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp ----ST-T--GGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred ----hh-h--HHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 22 1 23467889999999999999999864
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=97.33 E-value=0.00068 Score=49.02 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=49.7
Q ss_pred ccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 20 PLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 20 ~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
.|. +| ++. |.+...+|+. |..++. ...++.+++.+.+.+|.++ ++|.|+++.|...|+.
T Consensus 3 ~F~~fD~~~t-G~V~v~~l~~~Lra~~~------~~p~e~~Lq~l~~elDP~g-----~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKT-GRVPVSDLITYLRAVTG------RSPEESELQDLINELDPEG-----RDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCC-ceEeHHHHHHHHHHHcC------CCCcHHHHHHHHHHhCCCC-----CCceEeHHHHHHHHHH
Confidence 589 99 888 9999999999 554432 2567889999999999995 4699999999888876
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.27 E-value=0.004 Score=60.62 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=95.3
Q ss_pred hhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 11 GTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 11 g~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
-.|+|+.--.|. .+ ++. -..|++.+.. +.. |++.+-+..+...++..++.-- .||-|||+||..
T Consensus 32 ~~eLr~if~~~as~e~~ge-~~mt~edFv~~ylg------L~~e~~~n~~~v~Lla~iaD~t-----KDglisf~eF~a- 98 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGE-SYMTPEDFVRRYLG------LYNESNFNDKIVRLLASIADQT-----KDGLISFQEFRA- 98 (694)
T ss_pred hHHHHHHHHHHhHHhhccc-cccCHHHHHHHHHh------hcccccCChHHHHHHHhhhhhc-----ccccccHHHHHH-
Confidence 345555554566 67 776 7888888877 533 3444555555566666655321 799999999932
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCCh
Q 026610 88 ASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEF 167 (236)
Q Consensus 88 l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~ 167 (236)
.- .+.+. +. ..-..+|+-||+.++|.+|.++.+.++++....+.+|-.-+.
T Consensus 99 -------fe-~~lC~------------------pD---al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~ 149 (694)
T KOG0751|consen 99 -------FE-SVLCA------------------PD---ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDS 149 (694)
T ss_pred -------HH-hhccC------------------ch---HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCc
Confidence 11 12222 22 246789999999999999999999999998776666644344
Q ss_pred HHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 168 PQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 168 ~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
+-+.-.|. .+.--.++|.||.+++.+.-+.
T Consensus 150 efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~~E 179 (694)
T KOG0751|consen 150 EFIKLHFG---DIRKRHLNYAEFTQFLHEFQLE 179 (694)
T ss_pred chHHHHhh---hHHHHhccHHHHHHHHHHHHHH
Confidence 44444333 3334457999999998876543
No 77
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0018 Score=61.97 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=92.8
Q ss_pred CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCC
Q 026610 23 LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKD 101 (236)
Q Consensus 23 lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~ 101 (236)
++ +.+ |-||.+|-.=|.-+ +.+|+.-..=+++-+|.| +||.|+.+||-...+-+. .+
T Consensus 208 ~~lg~~-GLIsfSdYiFLlTl--------LS~p~~~F~IAFKMFD~d------gnG~IdkeEF~~v~~li~-------sQ 265 (489)
T KOG2643|consen 208 YKLGES-GLISFSDYIFLLTL--------LSIPERNFRIAFKMFDLD------GNGEIDKEEFETVQQLIR-------SQ 265 (489)
T ss_pred EEcCCC-CeeeHHHHHHHHHH--------HccCcccceeeeeeeecC------CCCcccHHHHHHHHHHHH-------hc
Confidence 55 666 99999997763221 346776677779999999 799999999966555432 22
Q ss_pred CCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCC
Q 026610 102 DPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEG 181 (236)
Q Consensus 102 ~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~ 181 (236)
..+-+.-.|+ .+.-..-.-.++..+..-| |=++++|++|.+|..++++++. .+...-=|.++|...
T Consensus 266 ~~~g~~hrd~--~tt~~s~~~~~nsaL~~yF--FG~rg~~kLs~deF~~F~e~Lq----------~Eil~lEF~~~~~~~ 331 (489)
T KOG2643|consen 266 TSVGVRHRDH--FTTGNSFKVEVNSALLTYF--FGKRGNGKLSIDEFLKFQENLQ----------EEILELEFERFDKGD 331 (489)
T ss_pred cccceecccC--ccccceehhhhhhhHHHHh--hccCCCccccHHHHHHHHHHHH----------HHHHHHHHHHhCccc
Confidence 2223322232 1111111222333344443 6788999999999999998863 344555588999988
Q ss_pred CcccCHHHHHHHHH
Q 026610 182 EEELGQAQFTELLR 195 (236)
Q Consensus 182 DG~Id~eEF~~lm~ 195 (236)
.|.|+...|..+|-
T Consensus 332 ~g~Ise~DFA~~lL 345 (489)
T KOG2643|consen 332 SGAISEVDFAELLL 345 (489)
T ss_pred ccccCHHHHHHHHH
Confidence 89999999998875
No 78
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.17 E-value=0.00062 Score=56.13 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=48.5
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
+...+++-++ +| +++ |+|..+|||. |.-+| -.+++.+++.++.-.-.+ +|.|+|+.|.+
T Consensus 86 t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-------ekl~eeEVe~Llag~eD~-------nG~i~YE~fVk 147 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-------EKLTEEEVEELLAGQEDS-------NGCINYEAFVK 147 (152)
T ss_pred cHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-------hhccHHHHHHHHcccccc-------CCcCcHHHHHH
Confidence 4556677888 99 999 9999999999 87655 458899999999875544 89999999943
No 79
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.16 E-value=0.00054 Score=73.17 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=81.8
Q ss_pred chhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 10 DGTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 10 dg~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
..+.+++|.-.|+ +| +.+ |.|+..+++. |..+|..--...-+-|+++...+|.-+|.+ ++|.|+..+|..
T Consensus 2248 tEe~L~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~------r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPN------RDGYVSLQDYMA 2320 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCC------CcCcccHHHHHH
Confidence 4678899999999 99 999 9999999999 766553310112244567899999999999 899999999944
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 026610 87 LASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNAL 152 (236)
Q Consensus 87 ~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l 152 (236)
.|-. . .+ ..+++++ .++.||+.+|. +.-++++.++...|
T Consensus 2321 fmi~----------~----------ET-eNI~s~~-----eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2321 FMIS----------K----------ET-ENILSSE-----EIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred HHHh----------c----------cc-ccccchH-----HHHHHHHHhhc-CCccccHHHHHhcC
Confidence 4422 1 11 2345555 49999999999 77899999987444
No 80
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.11 E-value=0.00052 Score=41.65 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 170 LNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
+..+|+.+|.|+||.|+.+||..+|++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 678999999999999999999999985
No 81
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.10 E-value=0.0036 Score=60.29 Aligned_cols=153 Identities=14% Similarity=0.232 Sum_probs=93.6
Q ss_pred cccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIA 96 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA 96 (236)
..|. ++ |.+ |.||...+..+..-+ .-+....+.++++.++.. +.+.+.+..|...+++++.-..
T Consensus 143 ~~f~k~~~d~~-g~it~~~Fi~~~~~~-------~~l~~t~~~~~v~~l~~~------~~~yl~q~df~~~Lqeli~Thp 208 (493)
T KOG2562|consen 143 STFRKIDGDDT-GHITRDKFINYWMRG-------LMLTHTRLEQFVNLLIQA------GCSYLRQDDFKPYLQELIATHP 208 (493)
T ss_pred hhhhhhccCcC-CceeHHHHHHHHHhh-------hhHHHHHHHHHHHHHhcc------CccceeccccHHHHHHHHhcCC
Confidence 6788 99 999 999999999943222 235667788899999998 6999999999888887655555
Q ss_pred -hhcCCCC-------eEEE-----Eeccc-----hhhhhcCCc-----------chHHH-----------HHHHHHhhhC
Q 026610 97 -DELKDDP-------LVVC-----VLDGN-----MLKLFLGNE-----------DDFTM-----------LAENLFADLD 136 (236)
Q Consensus 97 -~~L~~~p-------ivva-----~ldgs-----~l~~~l~de-----------~~f~~-----------~l~~aF~~~D 136 (236)
--+...| .+|+ ++|.+ +++++++.- ..-++ .+.-.|-.+|
T Consensus 209 l~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD 288 (493)
T KOG2562|consen 209 LEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELD 288 (493)
T ss_pred chhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhc
Confidence 2333333 1111 23322 223332221 11111 2334488899
Q ss_pred CCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHh----cCCCCcccCHHHHHHHH
Q 026610 137 TEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKH----GAEGEEELGQAQFTELL 194 (236)
Q Consensus 137 ~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~----D~d~DG~Id~eEF~~lm 194 (236)
+|++|.|++++|..--.. .+ ..-.++.||.++ -.-.+|++||++|.-++
T Consensus 289 ~Dhd~lidk~~L~ry~d~----tl-----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fi 341 (493)
T KOG2562|consen 289 TDHDGLIDKEDLKRYGDH----TL-----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFI 341 (493)
T ss_pred cccccccCHHHHHHHhcc----ch-----hhHHHHHHHhhccccceeeecCcccHHHHHHHH
Confidence 999999999999843211 11 123456666622 23455666666666554
No 82
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.06 E-value=0.00083 Score=64.48 Aligned_cols=67 Identities=6% Similarity=-0.036 Sum_probs=56.2
Q ss_pred hcccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHH
Q 026610 16 SLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDY 91 (236)
Q Consensus 16 ~l~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~ 91 (236)
.|..+|. +| |++ |.||.+|+++..++-++ +.-..+.+.++.++-+.+|.| +||.||..||++.++-+
T Consensus 548 ~LetiF~~iD~D~S-G~isldEF~~a~~l~~s--h~~~~i~~~~i~~la~~mD~N------kDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNS-GEISLDEFRTAWKLLSS--HMNGAISDDEILELARSMDLN------KDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCC-CceeHHHHHHHHHHHHh--hcCCCcCHHHHHHHHHhhccC------CCCcccHHHHHHHHhhh
Confidence 3448899 99 999 99999999995444333 556678889999999999999 79999999999988764
No 83
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.02 E-value=0.0016 Score=63.53 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=57.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQD 200 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~ 200 (236)
.+.+.|..+| |++|++|..+|.++|.+.+.-.|- -..+.+++++.+++.|.+|+|+|+||...+..+.-.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~---~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGY---FVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccc---hhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 4889999999 999999999999999985532221 124678999999999999999999999977766544
No 84
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.93 E-value=0.0011 Score=57.87 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=57.5
Q ss_pred hhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHH
Q 026610 12 TQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLA 88 (236)
Q Consensus 12 ~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l 88 (236)
.+|..+-..|+ +| +.| |.|+.-||+- +-++|+..+|+| ...+|..+|-| .+|.|++-||+=.+
T Consensus 96 kqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLgapQTHL~-------lK~mikeVded------~dgklSfreflLIf 161 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLGAPQTHLG-------LKNMIKEVDED------FDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhCCchhhHH-------HHHHHHHhhcc------cccchhHHHHHHHH
Confidence 46777889999 99 999 9999999999 666655444444 67899999999 79999999997777
Q ss_pred HHHHHHHHhhcCC
Q 026610 89 SDYITAIADELKD 101 (236)
Q Consensus 89 ~~~l~~iA~~L~~ 101 (236)
+. +.|-+|.+
T Consensus 162 rk---aaagEL~~ 171 (244)
T KOG0041|consen 162 RK---AAAGELQE 171 (244)
T ss_pred HH---Hhcccccc
Confidence 66 34444444
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.016 Score=59.02 Aligned_cols=159 Identities=20% Similarity=0.266 Sum_probs=114.9
Q ss_pred ccc-CCCCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHh
Q 026610 20 PLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIAD 97 (236)
Q Consensus 20 ~F~-lDd~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~ 97 (236)
.|. |--+. |.||..+-+. +.++ ++|...+.+|-...|.| .||..|..||+=.|+-|.+.++-
T Consensus 21 qF~~Lkp~~-gfitg~qArnfflqS---------~LP~~VLaqIWALsDld------kDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 21 QFGQLKPGQ-GFITGDQARNFFLQS---------GLPTPVLAQIWALSDLD------KDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred HHhccCCCC-CccchHhhhhhHHhc---------CCChHHHHHHHHhhhcC------ccccchHHHHHHHHHHHHHHhcC
Confidence 466 66777 9999999999 7664 58999999999999999 79999999999999998877653
Q ss_pred ----------hcCCCC--------------------------------------eEEE---------Eecc-------ch
Q 026610 98 ----------ELKDDP--------------------------------------LVVC---------VLDG-------NM 113 (236)
Q Consensus 98 ----------~L~~~p--------------------------------------ivva---------~ldg-------s~ 113 (236)
-|+..| +.|+ +-+| +.
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence 222222 2333 2234 22
Q ss_pred hhh---h-cCCc--------------chHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHH
Q 026610 114 LKL---F-LGNE--------------DDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK 175 (236)
Q Consensus 114 l~~---~-l~de--------------~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~ 175 (236)
+.. + ..-+ +.-.-...+.|..+|+-.+|+||-.--|.+|.. .|+| ..++-.|--
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q----S~Lp----q~~LA~IW~ 236 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ----SGLP----QNQLAHIWT 236 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHh----cCCc----hhhHhhhee
Confidence 110 0 0000 000113678999999999999999999999977 5676 556777777
Q ss_pred HhcCCCCcccCHHHHHHHHHHHHHHHH
Q 026610 176 KHGAEGEEELGQAQFTELLRQVLQDIV 202 (236)
Q Consensus 176 e~D~d~DG~Id~eEF~~lm~~il~~~a 202 (236)
--|.|+||+++-+||.--|-=+-.+|+
T Consensus 237 LsDvd~DGkL~~dEfilam~liema~s 263 (1118)
T KOG1029|consen 237 LSDVDGDGKLSADEFILAMHLIEMAKS 263 (1118)
T ss_pred eeccCCCCcccHHHHHHHHHHHHHHhc
Confidence 889999999999999877765544443
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.76 E-value=0.0045 Score=58.88 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=50.4
Q ss_pred cCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHH
Q 026610 49 FGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLA 128 (236)
Q Consensus 49 ~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l 128 (236)
.|...-...+..+++.+|.+ ++|.|+++||.. +
T Consensus 327 ~~~~~~~~~l~~aF~~~D~d------gdG~Is~~E~~~-----------------------------------------~ 359 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLD------GDGFITREEWLG-----------------------------------------S 359 (391)
T ss_pred hccChhhHHHHHHHHHhCCC------CCCcCcHHHHHH-----------------------------------------H
Confidence 35555577899999999999 799999999910 4
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 129 ENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 129 ~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
+.+|+.+|.|++|.||.+|++.+++.
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 67899999999999999999998865
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.74 E-value=0.0041 Score=42.75 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=39.4
Q ss_pred cccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHH
Q 026610 142 KVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (236)
Q Consensus 142 ~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~i 197 (236)
++|-.|++..|..++++. +......+|+++|..++|.++.+||.++.+..
T Consensus 1 kmsf~Evk~lLk~~NI~~------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM------DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc------CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 367889999998887653 35677899999999999999999999988753
No 88
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.53 E-value=0.003 Score=35.12 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 170 LNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
+..+|+.+|.+++|.|++.||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 568999999999999999999999875
No 89
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.33 E-value=0.0041 Score=57.79 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=74.7
Q ss_pred hHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhh
Q 026610 56 NLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADL 135 (236)
Q Consensus 56 ~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~ 135 (236)
....+++..||.+ ++|.+||-|....+ +-|+. +......++-+|+.|
T Consensus 259 d~l~~~f~LFde~------~tg~~D~re~v~~l--------avlc~-------------------p~~t~~iiq~afk~f 305 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG------TTGNGDYRETVKTL--------AVLCG-------------------PPVTPVIIQYAFKRF 305 (412)
T ss_pred hhhhhhhheecCC------CCCcccHHHHhhhh--------eeeeC-------------------CCCcHHHHHHHHHhc
Confidence 4678899999999 79999999993311 11222 222233689999999
Q ss_pred CCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 136 DTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 136 D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
+.+-||.+..++|--+|.- ..|++.. .+-.+|...+...+|+|.|++|+.++.
T Consensus 306 ~v~eDg~~ge~~ls~ilq~---~lgv~~l----~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 306 SVAEDGISGEHILSLILQV---VLGVEVL----RVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred ccccccccchHHHHHHHHH---hcCccee----eccccchhhhcccCcceeHHHHHHHHH
Confidence 9999999999988877754 2455421 244678899999999999999999876
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.31 E-value=0.0012 Score=52.16 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=39.1
Q ss_pred ccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHH
Q 026610 18 SQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHAS 85 (236)
Q Consensus 18 ~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~ 85 (236)
.=.|. || |+| |.|++.||..+... +..+++=+.+.++..|.| +||.|+..|+.
T Consensus 57 ~W~F~~LD~n~d-~~L~~~El~~l~~~--------l~~~e~C~~~F~~~CD~n------~d~~Is~~EW~ 111 (113)
T PF10591_consen 57 HWKFCQLDRNKD-GVLDRSELKPLRRP--------LMPPEHCARPFFRSCDVN------KDGKISLDEWC 111 (113)
T ss_dssp HHHHHHH--T-S-SEE-TTTTGGGGST--------TSTTGGGHHHHHHHH-TT-------SSSEEHHHHH
T ss_pred hhhHhhhcCCCC-CccCHHHHHHHHHH--------HhhhHHHHHHHHHHcCCC------CCCCCCHHHHc
Confidence 34599 99 999 99999999995331 235567789999999999 79999999983
No 91
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.22 E-value=0.0073 Score=59.08 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=64.2
Q ss_pred echhhHhhcccccc-CCCCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 9 IDGTQLRSLSQPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 9 ldg~~i~~l~~~F~-lDd~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
+.-.|+++|...|. +||++ |++|..||.+ +.+.+.. .-....+++..++...+.| .+|.|+++||..
T Consensus 13 ~tq~El~~l~~kF~~~d~~~-G~v~~~~l~~~f~k~~~~----~g~~~~eei~~~l~~~~~~------~~g~v~fe~f~~ 81 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLDDQK-GYVTVYELPDAFKKAKLP----LGYFVREEIKEILGEVGVD------ADGRVEFEEFVG 81 (627)
T ss_pred ccHHHHHHHHHHHHhhcCCC-CeeehHHhHHHHHHhccc----ccchhHHHHHHHHhccCCC------cCCccCHHHHHH
Confidence 45679999999999 99888 9999999999 7776533 1123468899999999999 699999999998
Q ss_pred HHHHHHHHHHhhcC
Q 026610 87 LASDYITAIADELK 100 (236)
Q Consensus 87 ~l~~~l~~iA~~L~ 100 (236)
.+..+...-++..+
T Consensus 82 ~~~~l~s~~~~k~~ 95 (627)
T KOG0046|consen 82 IFLNLKSKDIAKIG 95 (627)
T ss_pred HHHhhhhhhhhhhc
Confidence 77776655433333
No 92
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.20 E-value=0.028 Score=60.80 Aligned_cols=66 Identities=17% Similarity=0.376 Sum_probs=55.7
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCC---hHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE---FPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~---~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
..-+|++||++++|.++..+.+..|..+|= .+|-.+. .+.+.+++.-+|++.+|-|+..+|..+|-
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY--~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGY--DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCC--CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 356899999999999999999999988773 3432222 35899999999999999999999999986
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.72 E-value=0.015 Score=32.19 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
++.+|+.+|.+++|.|+..+++.++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678999999999999999999988754
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.54 E-value=0.13 Score=50.47 Aligned_cols=152 Identities=18% Similarity=0.302 Sum_probs=98.1
Q ss_pred CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCC
Q 026610 23 LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKD 101 (236)
Q Consensus 23 lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~ 101 (236)
-| ..| |-||.+|++.+.... =.|+..+..+++-+|.. ++|++++++|...++.- .+..
T Consensus 83 aD~tKD-glisf~eF~afe~~l--------C~pDal~~~aFqlFDr~------~~~~vs~~~~~~if~~t------~l~~ 141 (694)
T KOG0751|consen 83 ADQTKD-GLISFQEFRAFESVL--------CAPDALFEVAFQLFDRL------GNGEVSFEDVADIFGQT------NLHH 141 (694)
T ss_pred hhhccc-ccccHHHHHHHHhhc--------cCchHHHHHHHHHhccc------CCCceehHHHHHHHhcc------cccc
Confidence 45 889 999999999854322 25788899999999999 69999999997766652 1111
Q ss_pred CCeEEEEeccchhhhhcCCcch-------HHH--------HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCC
Q 026610 102 DPLVVCVLDGNMLKLFLGNEDD-------FTM--------LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSE 166 (236)
Q Consensus 102 ~pivva~ldgs~l~~~l~de~~-------f~~--------~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~ 166 (236)
=+---.|+..++.+..+.+. |.+ -..++|+..|+.++|+||.=..+..+.....++ +|
T Consensus 142 --~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~-lt---- 214 (694)
T KOG0751|consen 142 --HIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL-LT---- 214 (694)
T ss_pred --CCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc-CC----
Confidence 12224566666555555432 222 267899999999999999999998886644322 22
Q ss_pred hHHHHHHHHH-hcCCCCcccCHHHHH---------HHHHHHHHHHHH
Q 026610 167 FPQLNDILKK-HGAEGEEELGQAQFT---------ELLRQVLQDIVD 203 (236)
Q Consensus 167 ~~~~~~i~~e-~D~d~DG~Id~eEF~---------~lm~~il~~~a~ 203 (236)
+.++..+.- ...+..-.+++--|. +++|++....+.
T Consensus 215 -~~v~~nlv~vagg~~~H~vSf~yf~afnslL~~melirk~y~s~~~ 260 (694)
T KOG0751|consen 215 -PFVEENLVSVAGGNDSHQVSFSYFNAFNSLLNNMELIRKIYSSLAG 260 (694)
T ss_pred -HHHhhhhhhhcCCCCccccchHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 234444443 323333345544443 455666666665
No 95
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.052 Score=43.76 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.4
Q ss_pred cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCC-CCC---hhH----HHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGL-SLP---QNL----KSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~-~~~---~~~----~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
.-|+ =| |++ |.|..=||.. +.+....- -.|- +.| +.+ ++.+++.-|.| ++|.|+|.||++
T Consensus 71 HYF~MHDldkn-n~lDGiEl~kAiTH~H~~h-~~ghep~Pl~sE~Ele~~iD~vL~DdDfN------~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKN-NFLDGIELLKAITHTHDAH-DSGHEPVPLSSEAELERLIDAVLDDDDFN------GDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcC-CcchHHHHHHHHHHHhhhh-hcCCCCCCCCCHHHHHHHHHHHhcccccC------CCceeeHHHHHh
Confidence 4577 78 999 9999999999 77654310 0122 222 234 44455555555 799999999954
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.37 E-value=0.086 Score=38.59 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=50.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCC----CCcccCHHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAE----GEEELGQAQFTELLR 195 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d----~DG~Id~eEF~~lm~ 195 (236)
+..+|+.+-. +.+.+|.++++.+|.. ++|.+.. +.+.+.++|.++..+ ..+.+++++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~---eQ~~~~~-~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLRE---EQGEPRL-TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHH---TSS-TTS-SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHH---HhccccC-cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 7789999955 7899999999999976 3554433 467899999987655 468899999999874
No 97
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=93.75 E-value=0.12 Score=43.28 Aligned_cols=58 Identities=9% Similarity=0.036 Sum_probs=45.1
Q ss_pred Hhhcc--cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhH----HHHHHHhhcCCCCCccccCCccCHHHH
Q 026610 14 LRSLS--QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNL----KSTALKHISGSDDDVTFRIKEFDRDHA 84 (236)
Q Consensus 14 i~~l~--~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~----~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (236)
=|.|+ =.|+ .| |+| +.|....|.. +..+--. .+++++ .+.++.+.|.| |+|.+++.||
T Consensus 105 PrdlK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr~------eLs~eEv~~i~ekvieEAD~D------gDgkl~~~eF 171 (189)
T KOG0038|consen 105 PRDLKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTRD------ELSDEEVELICEKVIEEADLD------GDGKLSFAEF 171 (189)
T ss_pred hHHhhhhheeEEeecCCC-CcccHHHHHHHHHHHhhc------cCCHHHHHHHHHHHHHHhcCC------CCCcccHHHH
Confidence 34444 5688 99 999 9999999999 7765433 466654 56678888898 7999999999
No 98
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.69 E-value=0.36 Score=43.76 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=69.0
Q ss_pred hhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHH-h
Q 026610 55 QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLF-A 133 (236)
Q Consensus 55 ~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF-~ 133 (236)
...+..++..+|.| ++..++..||.. ..+-|++.. ++-.=++.+.+.-.+-| .
T Consensus 235 rfmVkeivrdlDqd------gDkqlSvpeFis-----------------lpvGTVenq---qgqdiddnwvkdRkkEFeE 288 (362)
T KOG4251|consen 235 RFMVKEIVRDLDQD------GDKQLSVPEFIS-----------------LPVGTVENQ---QGQDIDDNWVKDRKKEFEE 288 (362)
T ss_pred HHHHHHHHHHhccC------CCeeecchhhhc-----------------CCCcchhhh---hccchHHHHHHHHHHHHHH
Confidence 35788899999999 699999999932 122233311 11111111111122233 3
Q ss_pred hhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHH
Q 026610 134 DLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTE 192 (236)
Q Consensus 134 ~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~ 192 (236)
.+|.+++|..|..||........ +..+....+.|+.--|.|+|..++.+|...
T Consensus 289 lIDsNhDGivTaeELe~y~dP~n------~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 289 LIDSNHDGIVTAEELEDYVDPQN------FRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HhhcCCccceeHHHHHhhcCchh------hhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 45999999999999998764432 222345778889999999999999998654
No 99
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.37 E-value=0.55 Score=46.90 Aligned_cols=140 Identities=15% Similarity=0.183 Sum_probs=84.5
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCC-CCccccCCccCHHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSD-DDVTFRIKEFDRDHASKLAS 89 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~-~~~~~~~g~I~~~EF~~~l~ 89 (236)
-++.|..+|. -| |.| |.+|..||..+... -|+-++.+.++..+-+.+...- +.+ .+..+...-|+-+..
T Consensus 193 ~v~al~RIFki~D~d~D-~~Lsd~Eln~fQ~~-----CF~~pl~p~~l~~vk~vv~e~~p~gv--~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDND-GALSDAELNDFQKK-----CFNTPLDPQELEDVKNVVQEICPDGV--YERGLTLPGFLFLNT 264 (625)
T ss_pred HHHHHHHHHhhhccccc-cccchhhhhHHHHH-----hcCCCCCHHHHHHHHHHHHhhcCchh--hhccccccchHHHHH
Confidence 4677789999 89 999 99999999996542 2566777776666555555331 011 122233333533322
Q ss_pred HHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChH-
Q 026610 90 DYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFP- 168 (236)
Q Consensus 90 ~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~- 168 (236)
.. .+-=+.| ..|.+-+.|--+.+=.|+.+.|.+- +-+||.++.+
T Consensus 265 lf-----------------------iergr~E-----ttW~iLR~fgY~DsleL~~~~l~p~-------~~~~p~~s~EL 309 (625)
T KOG1707|consen 265 LF-----------------------IERGRHE-----TTWTILRKFGYTDSLELTDEYLPPR-------LKVPPDQSVEL 309 (625)
T ss_pred HH-----------------------HHhcccc-----chhhhhhhcCCcchhhhhhhhcCcc-------ccCCCCcceec
Confidence 21 0011112 2555555554454444555444422 3345544433
Q ss_pred ------HHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 169 ------QLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 169 ------~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
-+..+|..+|.|+||.++-+||..+++
T Consensus 310 s~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 310 SPKGYRFLVDVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred cHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhh
Confidence 367999999999999999999998876
No 100
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.15 E-value=0.75 Score=31.65 Aligned_cols=48 Identities=2% Similarity=0.059 Sum_probs=35.2
Q ss_pred cccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 30 TVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 30 ~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
++|..|++. |..+.+ .+.+.-...+++..|.+ ++|.++-+||.+..+.
T Consensus 1 kmsf~Evk~lLk~~NI-------~~~~~yA~~LFq~~D~s------~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-------EMDDEYARQLFQECDKS------QSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----------HHHHHHHHHHH-SS------SSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-------CcCHHHHHHHHHHhccc------CCCCccHHHHHHHHHH
Confidence 468899999 665543 36677788899999999 6999999999776654
No 101
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.79 E-value=0.11 Score=48.53 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=67.7
Q ss_pred cCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 75 RIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 75 ~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
+--+=-.+||+..|.. .|+.. +|.+.++++.=+..-.|| +..+.=-|.++|+|+|+.|.+.|++++=.-
T Consensus 293 gC~e~KKteFL~~Ll~-------aL~Td-mv~s~~~as~gr~~e~De---eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~ 361 (421)
T KOG4578|consen 293 GCPEKKKTEFLTSLLD-------ALKTD-MVMSGINASNGRKSEPDE---ERVVHWYFNQLDKNSNNDIERREWKPFKRV 361 (421)
T ss_pred CCCcchhhHHHHHHHH-------HHhhh-hhhhcccccCCcccCCCh---hheeeeeeeeecccccCccchhhcchHHHH
Confidence 3445678999554444 33332 344556666433344452 125666799999999999999999865322
Q ss_pred cCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 155 MGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 155 ~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
+.. ..-| -.=-..+++-.|-|+|.+|++.|.+.-+.
T Consensus 362 l~k-~s~~----rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 362 LLK-KSKP----RKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred HHh-hccH----HHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 221 1111 12346888899999999999999887653
No 102
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=89.47 E-value=1 Score=42.22 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=74.6
Q ss_pred cccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHH
Q 026610 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (236)
Q Consensus 17 l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~ 93 (236)
|.+.|. +| +++ |.+..-|--. ++- +-|-+..+.+++-+++.++.. -||.++-++|+-.+|-
T Consensus 261 l~~~f~LFde~~t-g~~D~re~v~~lav------lc~p~~t~~iiq~afk~f~v~------eDg~~ge~~ls~ilq~--- 324 (412)
T KOG4666|consen 261 LAPTFMLFDEGTT-GNGDYRETVKTLAV------LCGPPVTPVIIQYAFKRFSVA------EDGISGEHILSLILQV--- 324 (412)
T ss_pred hhhhhheecCCCC-CcccHHHHhhhhee------eeCCCCcHHHHHHHHHhcccc------cccccchHHHHHHHHH---
Confidence 448899 99 888 9998877766 543 345667789999999999999 6999999999665544
Q ss_pred HHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 94 AIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 94 ~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
+.++.. ++ +--.|+..+...+|+|+.++.|.+...
T Consensus 325 --~lgv~~-------l~-----------------v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 325 --VLGVEV-------LR-----------------VPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred --hcCcce-------ee-----------------ccccchhhhcccCcceeHHHHHHHHHh
Confidence 333333 22 667899999999999999999988755
No 103
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.31 E-value=0.69 Score=46.18 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il 198 (236)
....|..+|.|+.|+++.+.++.+|+..++ ++| ...+.+++.++|.+.+|.+...||.++|..+-
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~--~~d----~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENV--GWD----EDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 557899999999999999999999998763 453 67899999999999999999999999987553
No 104
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=87.30 E-value=5.7 Score=35.86 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=66.2
Q ss_pred CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCe
Q 026610 25 TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPL 104 (236)
Q Consensus 25 d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pi 104 (236)
--| |.+|.+|+.....+... +++++..-..+.+.+... .....++.+|.+.++... ..
T Consensus 67 kAD-G~Vse~Ei~~~~~l~~~-----~~l~~~~r~~a~~lf~~~------k~~~~~l~~~~~~~~~~~-------~~--- 124 (267)
T PRK09430 67 KAK-GRVTEADIRIASQLMDR-----MNLHGEARRAAQQAFREG------KEPDFPLREKLRQFRSVC-------GG--- 124 (267)
T ss_pred hcC-CCcCHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHh------cccCCCHHHHHHHHHHHh-------cc---
Confidence 567 99999999853222111 346666644445555544 355588999977776632 11
Q ss_pred EEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHH
Q 026610 105 VVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKK 176 (236)
Q Consensus 105 vva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e 176 (236)
........+...|..-=.| |.++..|-. ++.+++.-+|++ ...++.++.+
T Consensus 125 ---------------r~~l~~~lL~~l~~vA~AD--G~l~~~E~~-~L~~Ia~~Lgis----~~df~~~~~~ 174 (267)
T PRK09430 125 ---------------RFDLLRMFLEIQIQAAFAD--GSLHPNERQ-VLYVIAEELGFS----RFQFDQLLRM 174 (267)
T ss_pred ---------------cHHHHHHHHHHHHHHHHhc--CCCCHHHHH-HHHHHHHHcCCC----HHHHHHHHHH
Confidence 2222333456666666665 889999955 666777667885 4456666554
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=1.1 Score=46.38 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=55.6
Q ss_pred cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~i 95 (236)
++|. +| ..+ |+||..+-|. |..+ ++|...+..|-..-|.| +||.++-+|| .|.-+|..+
T Consensus 199 QlFNa~Dktrs-G~Lsg~qaR~aL~qS---------~Lpq~~LA~IW~LsDvd------~DGkL~~dEf--ilam~liem 260 (1118)
T KOG1029|consen 199 QLFNALDKTRS-GYLSGQQARSALGQS---------GLPQNQLAHIWTLSDVD------GDGKLSADEF--ILAMHLIEM 260 (1118)
T ss_pred HHhhhcccccc-cccccHHHHHHHHhc---------CCchhhHhhheeeeccC------CCCcccHHHH--HHHHHHHHH
Confidence 8999 99 999 9999999999 7654 58999999999999999 7999999999 444455566
Q ss_pred HhhcCCCCeE
Q 026610 96 ADELKDDPLV 105 (236)
Q Consensus 96 A~~L~~~piv 105 (236)
|-.=..-|.+
T Consensus 261 a~sGq~lP~t 270 (1118)
T KOG1029|consen 261 AKSGQPLPKT 270 (1118)
T ss_pred HhcCCCCCCC
Confidence 6554444433
No 106
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.25 E-value=1.5 Score=43.33 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=52.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
..+-|+.+-.|-+|+|+-.--|++|.+ .-+| .+++.-|.+-.|.|.||.++..|||+-|.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK----Sklp----i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK----SKLP----IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh----ccCc----hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 667899999999999999999999987 3355 56778888889999999999999999875
No 107
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=84.65 E-value=1.1 Score=42.25 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
.+-=+|..+|.+.+|.|+..||+.+= . +. -..=+...|...|...||.|+-.|.+--+.
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~-l-dk--------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIE-L-DK--------NEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhh-c-cC--------chhHHHHHHhhhcccccCccccchhhhhhc
Confidence 37778999999999999999999542 2 11 023478889999999999999999886554
No 108
>PF14425 Imm3: Immunity protein Imm3
Probab=83.98 E-value=5.9 Score=31.78 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=61.7
Q ss_pred hhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCC-CCcccCHHHHHHH
Q 026610 115 KLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAE-GEEELGQAQFTEL 193 (236)
Q Consensus 115 ~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d-~DG~Id~eEF~~l 193 (236)
.+|+..++.....+.++|..|| +.|.+.+--+--+++.+-..+..-+..-.+.+-..+++++.. --++++.+|+..+
T Consensus 18 ~e~~~~d~s~~eaiar~~~eye--~lg~~EkiIv~~~igEi~l~~~~i~~~~~~~i~~~L~~~~~~~~~~eLt~eE~~dL 95 (117)
T PF14425_consen 18 DEYLNEDRSYSEAIARTFDEYE--NLGETEKIIVDTAIGEILLSHNKIFVGQKEGITKRLSQFDFEEVKGELTQEEKEDL 95 (117)
T ss_pred HHHHHccCCHHHHHHHHHHHHH--ccCcHHHHHHHHHHHHHHhhcchHHhhHHHHHHHHHHhcChHHHHhHhhHHHHHHH
Confidence 3455555556668999999996 568887777777777655443321111123455666676653 3377899999999
Q ss_pred HHHHHHHHHHHhccCCe
Q 026610 194 LRQVLQDIVDALADKHI 210 (236)
Q Consensus 194 m~~il~~~a~~L~~~Pv 210 (236)
++.+ ..|=.+|++.||
T Consensus 96 ~~R~-nkVL~~l~~~~i 111 (117)
T PF14425_consen 96 SQRI-NKVLDGLEKVEI 111 (117)
T ss_pred HHHH-HHHHHHHhcCcc
Confidence 8875 467788888887
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=83.73 E-value=10 Score=32.49 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.7
Q ss_pred cccccc-CC-CCCCCcccHHHHHH-HHHhc
Q 026610 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENE 43 (236)
Q Consensus 17 l~~~F~-lD-d~d~G~is~~EL~~-l~~~~ 43 (236)
|.+--. +| |+| |.|++-|.-. +..+|
T Consensus 9 LQqHvaFFDrd~D-GiI~P~dTy~GFraLG 37 (174)
T PF05042_consen 9 LQQHVAFFDRDKD-GIIYPWDTYQGFRALG 37 (174)
T ss_pred HhhhhceeCCCCC-eeECHHHHHHHHHHhC
Confidence 445567 99 999 9999999988 87776
No 110
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=82.62 E-value=1.5 Score=40.90 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=44.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhc-cCccCCCCCCCChH----------HHHHHHHHhcCCCCcccCHHHHHHH
Q 026610 130 NLFADLDTEDEGKVCKGEIQNALGH-MGVEFGVPPFSEFP----------QLNDILKKHGAEGEEELGQAQFTEL 193 (236)
Q Consensus 130 ~aF~~~D~d~sG~IS~~ELr~~l~~-~~~~~Glpp~~~~~----------~~~~i~~e~D~d~DG~Id~eEF~~l 193 (236)
-.|...|.|++|++...||...|.. +-+-.. |..+++. .-+-+++++|.|.|.-|+.+||..-
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 3577889999999999999988755 221111 1111111 1236788999999999999999854
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=82.17 E-value=0.98 Score=42.39 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=51.4
Q ss_pred HHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCC
Q 026610 61 ALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDE 140 (236)
Q Consensus 61 il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~s 140 (236)
-|+.+|.| +++.|+..|+.- .+.+|.......+..++.|++-|.|+|
T Consensus 338 ~F~qLdkN------~nn~i~rrEwKp---------------------------FK~~l~k~s~~rkC~rk~~~yCDlNkD 384 (421)
T KOG4578|consen 338 YFNQLDKN------SNNDIERREWKP---------------------------FKRVLLKKSKPRKCSRKFFKYCDLNKD 384 (421)
T ss_pred eeeeeccc------ccCccchhhcch---------------------------HHHHHHhhccHHHHhhhcchhcccCCC
Confidence 47888888 899999999821 466777777788899999999999999
Q ss_pred CcccHHHHHHHHhc
Q 026610 141 GKVCKGEIQNALGH 154 (236)
Q Consensus 141 G~IS~~ELr~~l~~ 154 (236)
-+||-+|++.-|+.
T Consensus 385 KkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 385 KKISLDEWRGCLGV 398 (421)
T ss_pred ceecHHHHhhhhcc
Confidence 99999999988754
No 112
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.14 E-value=1.5 Score=45.89 Aligned_cols=167 Identities=14% Similarity=0.215 Sum_probs=113.5
Q ss_pred hhHhhcccccc-CCCCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHH
Q 026610 12 TQLRSLSQPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (236)
Q Consensus 12 ~~i~~l~~~F~-lDd~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (236)
.+...+-++|. +.... |+++.+-.+. ++.. .+|-.....+=...|.| .+|.++..||.-.|+
T Consensus 126 qe~aky~q~f~s~~p~~-g~~sg~~~~pil~~s---------~Lp~~~l~~iw~l~d~d------~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 126 QEQAKYDQIFRSLSPSN-GLLSGDKAKPILLNS---------KLPSDVLGRIWELSDID------KDGNLDRDEFAVAMH 189 (847)
T ss_pred HHHHHHHHHHhccCCCC-CccccchhhhhhhcC---------CCChhhhcccccccccc------ccCCCChhhhhhhhh
Confidence 44555567788 88667 9999999999 6553 46666666677777777 799999999988887
Q ss_pred HHHHHHHhhcCCCCeEEE--Eeccchhh---------------------------h------------------------
Q 026610 90 DYITAIADELKDDPLVVC--VLDGNMLK---------------------------L------------------------ 116 (236)
Q Consensus 90 ~~l~~iA~~L~~~pivva--~ldgs~l~---------------------------~------------------------ 116 (236)
-+...+-.-..-.|--.- .|..++.. .
T Consensus 190 l~~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~ 269 (847)
T KOG0998|consen 190 LINDLLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQL 269 (847)
T ss_pred HHHHHhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCcccccccccccccc
Confidence 754443311111110000 01111100 0
Q ss_pred ------hcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHH
Q 026610 117 ------FLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQF 190 (236)
Q Consensus 117 ------~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF 190 (236)
.+.... .....++|...|++.+|+|+-.+.+..|.. .|++ ...+..+-..+|.+..|.+++.||
T Consensus 270 ~~s~~~~vsp~d--~~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~----~~~l~~~w~l~d~~n~~~ls~~ef 339 (847)
T KOG0998|consen 270 IVSWSPKVSPSD--KQKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS----KPRLAHVWLLADTQNTGTLSKDEF 339 (847)
T ss_pred ccccCcccChHH--HHHHHHHHHhccccCCCccccccccccccc----CCCC----hhhhhhhhhhcchhccCccccccc
Confidence 111110 123566899999999999999999988866 5665 445677778899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 026610 191 TELLRQVLQDIVDA 204 (236)
Q Consensus 191 ~~lm~~il~~~a~~ 204 (236)
+-.|-.+...-+.+
T Consensus 340 ~~~~~~~~~~~~~g 353 (847)
T KOG0998|consen 340 ALAMHLLEQKRAEG 353 (847)
T ss_pred chhhhhhhhhhhcC
Confidence 99998888876666
No 113
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=81.57 E-value=12 Score=38.56 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=89.8
Q ss_pred cccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAI 95 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~i 95 (236)
..|. .| +.+ |.++..|..+ +..+.. .+...-...++++.+.. +++.+...+|.+....
T Consensus 140 ~~~~~ad~~~~-~~~~~~~~~~~~~~~n~-------~l~~~~~~~~f~e~~~~------~~~k~~~~~~~~~~~~----- 200 (746)
T KOG0169|consen 140 SIFQEADKNKN-GHMSFDEVLDLLKQLNV-------QLSESKARRLFKESDNS------QTGKLEEEEFVKFRKE----- 200 (746)
T ss_pred HHHHHHccccc-cccchhhHHHHHHHHHH-------hhhHHHHHHHHHHHHhh------ccceehHHHHHHHHHh-----
Confidence 7788 99 999 9999999999 555432 24456677788888777 6899999999554433
Q ss_pred HhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHH
Q 026610 96 ADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK 175 (236)
Q Consensus 96 A~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~ 175 (236)
+.. .+ .+..+|..+-.+ .+++|..+|..+|.....+-++ ..+...+|++
T Consensus 201 ---~~~------------------rp-----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~----~~~~ae~ii~ 249 (746)
T KOG0169|consen 201 ---LTK------------------RP-----EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGA----TLDEAEEIIE 249 (746)
T ss_pred ---hcc------------------Cc-----hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccc----cHHHHHHHHH
Confidence 111 11 378888877665 8999999999999875333233 1446677777
Q ss_pred HhcC----CCCcccCHHHHHHHHH
Q 026610 176 KHGA----EGEEELGQAQFTELLR 195 (236)
Q Consensus 176 e~D~----d~DG~Id~eEF~~lm~ 195 (236)
++-. -..+.++.+.|...|.
T Consensus 250 ~~e~~k~~~~~~~l~ldgF~~yL~ 273 (746)
T KOG0169|consen 250 RYEPSKEFRRHGLLSLDGFTRYLF 273 (746)
T ss_pred HhhhhhhccccceecHHHHHHHhc
Confidence 6533 2446689999998886
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.29 E-value=6.9 Score=33.49 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=52.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCc------------cCCC---------CCC---------------CC----
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGV------------EFGV---------PPF---------------SE---- 166 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~------------~~Gl---------pp~---------------~~---- 166 (236)
.+++--..||.|+||.|+.-|.=..|..+|- ..++ |.+ |+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4777788999999999999999888877662 1111 100 01
Q ss_pred -------hHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 167 -------FPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 167 -------~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
+...++||++++..+.+.+++.|...|++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 124789999999988899999999999984
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=79.10 E-value=2 Score=40.60 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=42.5
Q ss_pred cccccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHH
Q 026610 17 LSQPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASK 86 (236)
Q Consensus 17 l~~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~ 86 (236)
+.=.|. || |.| |.|+.+||+.+- ++--+.=+.+.|+..|.. .+|.|+-.|+--
T Consensus 252 ~gWMFnklD~N~D-l~Ld~sEl~~I~----------ldknE~CikpFfnsCD~~------kDg~iS~~EWC~ 306 (434)
T KOG3555|consen 252 LGWMFNKLDTNYD-LLLDQSELRAIE----------LDKNEACIKPFFNSCDTY------KDGSISTNEWCY 306 (434)
T ss_pred hhhhhhccccccc-cccCHHHhhhhh----------ccCchhHHHHHHhhhccc------ccCccccchhhh
Confidence 335799 99 999 999999999942 123345588999999999 799999999843
No 116
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=78.89 E-value=3.1 Score=43.54 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH----------H
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR----------Q 196 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~----------~ 196 (236)
.+.+.|..+|+.+.|.++.+++...|..+|...+-... -..+|-.++...|+++-|.+++.+|...|. +
T Consensus 748 ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~-~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r 826 (890)
T KOG0035|consen 748 ELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQ-GIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELR 826 (890)
T ss_pred HHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHH-HHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHH
Confidence 38999999999999999999999999887744321000 023677888899999999999999998886 5
Q ss_pred HHHHHHHHhccCC
Q 026610 197 VLQDIVDALADKH 209 (236)
Q Consensus 197 il~~~a~~L~~~P 209 (236)
++.++-+--+.++
T Consensus 827 ~i~s~~d~~ktk~ 839 (890)
T KOG0035|consen 827 AILAFEDWAKTKA 839 (890)
T ss_pred HHHHHHHHHcchh
Confidence 6667766666665
No 117
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.41 E-value=11 Score=28.19 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=60.0
Q ss_pred CCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeE
Q 026610 26 SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLV 105 (236)
Q Consensus 26 ~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~piv 105 (236)
-| |.+|.+|...+.++-.. ++ ++++.+...++..+... .+...++.+|.+.++..
T Consensus 12 aD-G~v~~~E~~~i~~~l~~--~~--~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~-------------- 66 (104)
T cd07313 12 AD-GEYDEEERAAIDRLLAE--RF--GLDAEEAAELLAEAEAL------EEEAPDLYEFTSLIKEH-------------- 66 (104)
T ss_pred Hc-CCCCHHHHHHHHHHHHH--Hh--CcCHHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHh--------------
Confidence 36 99999999886543222 22 46788889999888876 56778999997665542
Q ss_pred EEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 106 VCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 106 va~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
. ++..-...+..+|+.--.| |.+++.|.. ++.+
T Consensus 67 ------------~-~~~~r~~~l~~L~~vA~AD--G~~~~~E~~-~l~~ 99 (104)
T cd07313 67 ------------F-DYEERLELVEALWEVAYAD--GELDEYEEH-LIRR 99 (104)
T ss_pred ------------C-CHHHHHHHHHHHHHHHHhc--CCCCHHHHH-HHHH
Confidence 1 1222234677788887776 888888876 4433
No 118
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=78.07 E-value=2 Score=33.94 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeE
Q 026610 26 SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLV 105 (236)
Q Consensus 26 ~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~piv 105 (236)
-| |.++.+|+..+.+.-.. ..++++.....++..++.- ....+++.+|...++.
T Consensus 36 aD-G~v~~~E~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~--------------- 89 (140)
T PF05099_consen 36 AD-GEVDPEEIEAIRQLLAE----RFGLSPEEAEELIELADEL------KQEPIDLEELLRELRD--------------- 89 (140)
T ss_dssp TT-SS--CHHHHHHHHHHHH----CGCGSCHHHHHHHHHHCHH------HHHCCHHHHHHHHHCT---------------
T ss_pred cC-CCCCHHHHHHHHHHHHH----hhCCCHHHHHHHHHHHHHH------HhccccHHHHHHHHHH---------------
Confidence 47 99999999885443211 1345677777777777755 3556777888443322
Q ss_pred EEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCC
Q 026610 106 VCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPF 164 (236)
Q Consensus 106 va~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~ 164 (236)
.+. +..-...+..+|..--.| |.++..|-+ ++.++...+|+|+.
T Consensus 90 -----------~~~-~~~r~~ll~~l~~ia~AD--G~~~~~E~~-~l~~ia~~L~i~~~ 133 (140)
T PF05099_consen 90 -----------SLS-PEEREDLLRMLIAIAYAD--GEISPEEQE-FLRRIAEALGISEE 133 (140)
T ss_dssp -----------S---HHHHHHHHHHHHHHCTCT--TC-SCCHHH-HHHHHHHHCTS-SS
T ss_pred -----------hhc-hHHHHHHHHHHHHHHhcC--CCCCHHHHH-HHHHHHHHcCCCHH
Confidence 111 222345788999999887 788888866 66666666788743
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=2.9 Score=43.81 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=109.8
Q ss_pred cccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHH
Q 026610 17 LSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYIT 93 (236)
Q Consensus 17 l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~ 93 (236)
+...|+ +| .++ |.|+.+|-.. ++. -++|+....++-.-.|.. +-|..+..+|..-+|.+-.
T Consensus 13 ~~~~~~~~d~~~~-G~i~g~~a~~f~~~---------s~L~~qvl~qiws~~d~~------~~g~l~~q~f~~~lrlva~ 76 (847)
T KOG0998|consen 13 FDQYFKSADPQGD-GRITGAEAVAFLSK---------SGLPDQVLGQIWSLADSS------GKGFLNRQGFYAALRLVAQ 76 (847)
T ss_pred HHHhhhccCcccC-CcccHHHhhhhhhc---------cccchhhhhccccccccc------cCCccccccccccchHhhh
Confidence 447799 99 999 9999999999 654 368888888888888888 6799999999999998755
Q ss_pred HHHhhcCCCCeE--------EE---------------EeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHH
Q 026610 94 AIADELKDDPLV--------VC---------------VLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQN 150 (236)
Q Consensus 94 ~iA~~L~~~piv--------va---------------~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~ 150 (236)
+-...--..+.+ .- +.++..+-.+-.+++ ..-+.+|..+... +|..+-+-.+.
T Consensus 77 aq~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~---aky~q~f~s~~p~-~g~~sg~~~~p 152 (847)
T KOG0998|consen 77 AQSGRELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQ---AKYDQIFRSLSPS-NGLLSGDKAKP 152 (847)
T ss_pred hhcccCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHH---HHHHHHHhccCCC-CCccccchhhh
Confidence 433222221110 00 011111111111111 3467779999886 89999999999
Q ss_pred HHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHH
Q 026610 151 ALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIV 202 (236)
Q Consensus 151 ~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a 202 (236)
+|.+ .++| ......+-.-.|.|.+|.++..||.--|+-+...|-
T Consensus 153 il~~----s~Lp----~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 153 ILLN----SKLP----SDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred hhhc----CCCC----hhhhccccccccccccCCCChhhhhhhhhHHHHHhh
Confidence 9877 3454 334445556789999999999999999987776654
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.93 E-value=4.5 Score=41.58 Aligned_cols=65 Identities=14% Similarity=0.347 Sum_probs=55.3
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 126 ~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
.-+..+|+..|++++|.++..+...++..+.+..+ ......+|++.+.-+++++..++|..+-..
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~------~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLS------ESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhh------HHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 35888999999999999999999999988765432 456789999999999999999999887664
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=75.75 E-value=2.5 Score=30.73 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
-+.++|+.+ .++.++||.++||..|-.
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l~p 33 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSLTP 33 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS-C
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHcCc
Confidence 389999999 788899999999988744
No 122
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=75.11 E-value=24 Score=26.23 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeE
Q 026610 26 SDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLV 105 (236)
Q Consensus 26 ~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~piv 105 (236)
-| |.+|.+|...+..+-.. ...++.....+...+... .+...++.+|.+.++.. ++
T Consensus 12 aD-G~v~~~E~~~i~~~l~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~-------~~----- 67 (106)
T cd07316 12 AD-GRVSEAEIQAARALMDQ-----MGLDAEARREAIRLFNEG------KESDFGLEEYARQFRRA-------CG----- 67 (106)
T ss_pred cc-CCcCHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHh------CcCCCCHHHHHHHHHHH-------HC-----
Confidence 47 99999999886554322 233444555555555443 23336788886655542 11
Q ss_pred EEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 026610 106 VCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 106 va~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
.++..=...+..+|..--.| |.++..|-. .+.+
T Consensus 68 -------------~~~~~r~~~l~~l~~vA~AD--G~~~~~E~~-~l~~ 100 (106)
T cd07316 68 -------------GRPELLLQLLEFLFQIAYAD--GELSEAERE-LLRR 100 (106)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHc--CCCCHHHHH-HHHH
Confidence 11222234577777777775 788888876 4433
No 123
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=72.21 E-value=2.4 Score=34.86 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=42.5
Q ss_pred CcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCc-cccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 026610 29 STVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDV-TFRIKEFDRDHASKLASDYITAIADELKDDPLVVC 107 (236)
Q Consensus 29 G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~-~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva 107 (236)
+.||+.|+.+|.+.- .-+...+..++++|..+|.-- -+..+.|+|+-|..-|+-
T Consensus 6 ~~lsp~eF~qLq~y~--------eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~----------------- 60 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--------EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT----------------- 60 (138)
T ss_dssp S-S-HHHHHHHHHHH--------HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH-----------------
T ss_pred eccCHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH-----------------
Confidence 789999998865431 123446888999997554111 125679999999777766
Q ss_pred EeccchhhhhcCCcchHHHHHHHHHhhhCCCCC
Q 026610 108 VLDGNMLKLFLGNEDDFTMLAENLFADLDTEDE 140 (236)
Q Consensus 108 ~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~s 140 (236)
||+-+ .=+...+++|..|=+...
T Consensus 61 ---------yLe~d-~P~~lc~hLF~sF~~~~~ 83 (138)
T PF14513_consen 61 ---------YLEVD-LPEDLCQHLFLSFQKKPP 83 (138)
T ss_dssp ---------HTT-S---HHHHHHHHHHS-----
T ss_pred ---------HHcCC-CCHHHHHHHHHHHhCccc
Confidence 44444 344578999999976553
No 124
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=70.63 E-value=6.8 Score=43.39 Aligned_cols=86 Identities=13% Similarity=0.248 Sum_probs=59.0
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH----HHHHHh
Q 026610 130 NLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ----DIVDAL 205 (236)
Q Consensus 130 ~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~----~~a~~L 205 (236)
..|+++|.||.|.||+.+...+++.-. .- ....++=++.-..+|.+...+|++|..-+.+-.. -+|--|
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k---~y----tqse~dfllscae~dend~~~y~dfv~rfhepakdigfnvavll 4133 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK---HY----TQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKDIGFNVAVLL 4133 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc---cc----hhHHHHHHHHhhccCccccccHHHHHHHhcCchhhcCcchhhhh
Confidence 468999999999999999999997621 11 1346777788788888899999999987764322 222222
Q ss_pred ccCCeEEeeccccccChhhHHhh
Q 026610 206 ADKHIIIIPNIKIIDGSKLRMDH 228 (236)
Q Consensus 206 ~~~Pv~v~~~~~~~dG~~~~~~~ 228 (236)
-+ .++.+-+.+.|+-++
T Consensus 4134 tn------lsehmpndsrlk~~l 4150 (5019)
T KOG2243|consen 4134 TN------LSEHMPNDSRLKCFL 4150 (5019)
T ss_pred hh------hHhhCCCchhHHHHH
Confidence 21 245555666666554
No 125
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=66.06 E-value=33 Score=27.56 Aligned_cols=86 Identities=13% Similarity=0.043 Sum_probs=55.3
Q ss_pred hhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhh
Q 026610 55 QNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFAD 134 (236)
Q Consensus 55 ~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~ 134 (236)
=..+.+++.+...++. .+..++..|....+.++...++.++...+=+ +- . .=+..-+-.+.=++..
T Consensus 40 l~~v~~~f~~~~l~~~----~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i----~~-----~-~v~~a~~L~ln~Ll~v 105 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQS----NDSSLSVSQLETLLSSIYEFLNKRLPTLHQI----PS-----R-PVDLAVDLLLNWLLNV 105 (127)
T ss_dssp HHHHHHHHHHTT---T-----TSEEEHHHHHHHHHHHHHHHHHHSTTS--H----H-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcc----cCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----Cc-----h-hHHHHHHHHHHHHHHH
Confidence 3456778888776641 2567999999999999998888888773200 00 0 0013344567778889
Q ss_pred hCCCCCCcccHHHHHHHHhc
Q 026610 135 LDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 135 ~D~d~sG~IS~~ELr~~l~~ 154 (236)
+|.+++|+|+.-.++.+|--
T Consensus 106 yD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 106 YDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp H-TT--SEEEHHHHHHHHHH
T ss_pred hCCCCCCeeehhHHHHHHHH
Confidence 99999999999999988743
No 126
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=65.78 E-value=9.3 Score=28.63 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 140 sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
||.+|..|.+.+-.-+...+|++ ....+.+++.+..-.....++.+|...++.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLD----AEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcC----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 68888888885554444445665 455666666665555566788888777664
No 127
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=64.80 E-value=1.2 Score=32.48 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=34.3
Q ss_pred hhcccccc-CCCCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCC-CCccccCCccCHHHHH
Q 026610 15 RSLSQPLA-LPTSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSD-DDVTFRIKEFDRDHAS 85 (236)
Q Consensus 15 ~~l~~~F~-lDd~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~-~~~~~~~g~I~~~EF~ 85 (236)
..+.+.|+ |-++ |+.||.+||+.. +++...+..++++..-. ...+-..|.+||..|.
T Consensus 6 eqv~~aFr~lA~~-KpyVT~~dLr~~-------------l~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~ 64 (69)
T PF08726_consen 6 EQVEEAFRALAGG-KPYVTEEDLRRS-------------LTPEQAEYCISRMPPYEGPDGDAIPGAYDYESFT 64 (69)
T ss_dssp HHHHHHHHHHCTS-SSCEEHHHHHHH-------------S-CCCHHHHHCCSEC--SSS----TTEEECHHHH
T ss_pred HHHHHHHHHHHcC-CCcccHHHHHHH-------------cCcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHH
Confidence 34556788 8544 499999999993 23334477777776331 1001134789999994
No 128
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=62.17 E-value=45 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHhhh---CCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 129 ENLFADL---DTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 129 ~~aF~~~---D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
+++|..| =..+...++-.-+...|...++ ++..-....++-||..+-..+...|+|++|...|..+..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i---~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGI---IDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS-----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCC---CCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 3444444 4444556788888888866543 121123567899999987777788999999999886543
No 129
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=61.49 E-value=63 Score=26.17 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=26.3
Q ss_pred ccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHH
Q 026610 31 VTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (236)
Q Consensus 31 is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (236)
-|..||++ |.+. +.|+..++.++..+-.. |.|+=..|
T Consensus 26 ~s~~el~~kL~~k---------g~~~~~i~~vl~~l~~~--------~~ldD~~~ 63 (157)
T PRK00117 26 HSRAELRRKLAAK---------GFSEEVIEAVLDRLKEE--------GLLDDERF 63 (157)
T ss_pred hHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHc--------CCCCHHHH
Confidence 46788888 7653 57788888888887643 56666666
No 130
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=60.89 E-value=32 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.523 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccCCeEEeecccc
Q 026610 195 RQVLQDIVDALADKHIIIIPNIKI 218 (236)
Q Consensus 195 ~~il~~~a~~L~~~Pv~v~~~~~~ 218 (236)
-++|+.+|+.|+..-|+|.|++|.
T Consensus 175 Mk~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 175 MKILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred HHHHHHHHHHhCCeEEEEEecccH
Confidence 378999999999999999999874
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=54.44 E-value=94 Score=31.56 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHh----c---CCCCcccCHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKH----G---AEGEEELGQAQFTELLR 195 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~----D---~d~DG~Id~eEF~~lm~ 195 (236)
.+..+|..+=.+ .+.+|.++|+.+|... +|.+.. +.+.+.+++.++ . ..+.+.++++.|...|.
T Consensus 39 ei~~lf~~~~~~-~~~mt~~~l~~FL~~~---Q~e~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 39 DVKDVFCKFSVG-GGHMGADQLRRFLVLH---QDELDC-TLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHHHh---CCCcCC-CHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 499999999554 4789999999999773 443211 234455555543 1 11234589999998886
No 132
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.03 E-value=14 Score=37.24 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=54.6
Q ss_pred hhhHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHH
Q 026610 11 GTQLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKL 87 (236)
Q Consensus 11 g~~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~ 87 (236)
-++++-++.+|. +| |.. |.++.+..++ +... +.+.++....+++++++.+ -+|.+...||.+.
T Consensus 589 ~~~~~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~-------~~~~d~~~~~~~l~ea~~~------~~g~v~l~e~~q~ 654 (680)
T KOG0042|consen 589 PEDFLRRKTRFAFLDADKK-AYQAIADVLKVLKSE-------NVGWDEDRLHEELQEADEN------LNGFVELREFLQL 654 (680)
T ss_pred HHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHh------hcceeeHHHHHHH
Confidence 345666778899 99 788 9999999999 6543 2468899999999999998 6999999999877
Q ss_pred HHHH
Q 026610 88 ASDY 91 (236)
Q Consensus 88 l~~~ 91 (236)
++.+
T Consensus 655 ~s~~ 658 (680)
T KOG0042|consen 655 MSAI 658 (680)
T ss_pred HHHH
Confidence 6654
No 133
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=51.88 E-value=37 Score=25.96 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=33.7
Q ss_pred hcCCCCcccCHHHHHHH--HHHH---------------HHHHHHHhccCCeEEeeccccccChhhHH
Q 026610 177 HGAEGEEELGQAQFTEL--LRQV---------------LQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (236)
Q Consensus 177 ~D~d~DG~Id~eEF~~l--m~~i---------------l~~~a~~L~~~Pv~v~~~~~~~dG~~~~~ 226 (236)
+..|.+|-|...-+..+ |+.. +..++..|+.++++.+. .||..|||
T Consensus 28 ~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levs----eD~~~VRR 90 (90)
T cd08030 28 VEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVS----EDGKRVGR 90 (90)
T ss_pred hccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEc----CCCCccCC
Confidence 55677888866655432 2332 57899999999998888 88888875
No 134
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=51.53 E-value=57 Score=24.87 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccC---ccCC-CCCCC-ChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMG---VEFG-VPPFS-EFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~---~~~G-lpp~~-~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
..+-+|+.. .|++|.+++.-|...|...- ...| .|..+ ....+...|..+ ...-.|+.++|...|+.
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 377889988 88899999999988875521 1111 12111 134688889887 35677999999998863
No 135
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=51.11 E-value=17 Score=36.70 Aligned_cols=60 Identities=12% Similarity=0.284 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCc-cCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHH
Q 026610 125 TMLAENLFADLDTEDEGKVCKGEIQNALGHMGV-EFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTEL 193 (236)
Q Consensus 125 ~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~-~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~l 193 (236)
-..+...|..||.|+||-++..|+..+|...+. -+|-+|... ... .+..|-++|+-|.+.
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~-----~t~----~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD-----STV----KNERGWLTLNGFLSQ 374 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc-----cce----ecccceeehhhHHHH
Confidence 346899999999999999999999998866431 112112111 111 125688888888753
No 136
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=50.49 E-value=37 Score=28.00 Aligned_cols=52 Identities=2% Similarity=0.082 Sum_probs=36.5
Q ss_pred CcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 29 STVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 29 G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
..++...+.. +.+.+ +++-.++...++=++..+-.. +...|+|++|.+.|..
T Consensus 17 ~~m~~~~F~Kl~kD~~----i~d~k~t~tdvDiiF~Kvk~k------~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCG----IIDKKLTSTDVDIIFSKVKAK------GARKITFEQFLEALAE 69 (154)
T ss_dssp SEEEHHHHHHHHHHTS----S--SSS-HHHHHHHHHHHT-S------S-SEEEHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcC----CCCCCCchHHHHHHHHHhhcC------CCcccCHHHHHHHHHH
Confidence 5788888888 66654 334558888999999997665 4667999999776665
No 137
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.06 E-value=38 Score=33.84 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (236)
+-+..++.|+ +- |-. |.|+.+--++ +.++ .+|-.|+.-|-+..|.+ +||-++..||-..|.
T Consensus 229 QReYYvnQFrtvQpDp~-gfisGsaAknFFtKS---------klpi~ELshIWeLsD~d------~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPH-GFISGSAAKNFFTKS---------KLPIEELSHIWELSDVD------RDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHhhhhcccCCcc-cccccHHHHhhhhhc---------cCchHHHHHHHhhcccC------ccccccHHHHHhhHh
Confidence 3344558899 88 999 9999999999 6554 47778899999999999 899999999966665
Q ss_pred HHHHHHHhhcCCCCeEEEEeccchhhhh
Q 026610 90 DYITAIADELKDDPLVVCVLDGNMLKLF 117 (236)
Q Consensus 90 ~~l~~iA~~L~~~pivva~ldgs~l~~~ 117 (236)
- |||.=||=-|-+-
T Consensus 293 L--------------VVaRkNgypLPe~ 306 (737)
T KOG1955|consen 293 L--------------VVARKNGYPLPES 306 (737)
T ss_pred h--------------eeecccCCCCCCC
Confidence 4 7777666554433
No 138
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=48.95 E-value=37 Score=25.87 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhccCC
Q 026610 168 PQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKH 209 (236)
Q Consensus 168 ~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~~P 209 (236)
+.|.-+|+++ +|.+|.+++..|..+++++++ +..++++.|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lq-ip~~vgE~~ 42 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQ-IPRAVGEGP 42 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHH-HHHHTT-GG
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHH-HHHHhCccc
Confidence 4678889999 789999999999999998775 555666555
No 139
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=48.61 E-value=13 Score=26.74 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccCCeEEeeccccccChhhHHhh
Q 026610 196 QVLQDIVDALADKHIIIIPNIKIIDGSKLRMDH 228 (236)
Q Consensus 196 ~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~~~ 228 (236)
.+-..+++.|+.+|+-.+..-|+-||+++.-.|
T Consensus 15 Ri~~~l~~~l~~~~~g~I~~fKmtDG~giG~vv 47 (64)
T PF11061_consen 15 RIPKELVDKLGKNPIGTIKGFKMTDGSGIGVVV 47 (64)
T ss_pred hccHHHHHHhccCCcEEEEEEEEecCCcEEEEE
Confidence 455689999999999999999999999986544
No 140
>PRK10598 lipoprotein; Provisional
Probab=48.38 E-value=30 Score=29.90 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccCCeEEeeccccccChhhHHhh
Q 026610 191 TELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDH 228 (236)
Q Consensus 191 ~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~~~ 228 (236)
..++-.+++.++.-|+.+||++..+++....+.++++.
T Consensus 133 ~~l~p~l~~~L~~~l~~~PVY~L~d~~~~~eal~kk~~ 170 (186)
T PRK10598 133 QTLLPYLNQSLRSYFNQQPAYVLREDKSKAEALAKKLA 170 (186)
T ss_pred HHHHHHHHHHHHHHhccCCeEEECCCCCHHHHHHHhcc
Confidence 34444588889999999999999888877777777665
No 141
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=46.15 E-value=8.6 Score=25.31 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=22.1
Q ss_pred hHhhcccccc-CC--CCCCCcccHHHHHHHHH
Q 026610 13 QLRSLSQPLA-LP--TSDSSTVTGAQLLDFAE 41 (236)
Q Consensus 13 ~i~~l~~~F~-lD--d~d~G~is~~EL~~l~~ 41 (236)
-|..+..+|. .- ++|+.+||+.||+.|.+
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 3556667788 44 78889999999999544
No 142
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=41.29 E-value=52 Score=34.87 Aligned_cols=96 Identities=10% Similarity=-0.076 Sum_probs=66.9
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCC-----hhHHHHHHHhhcCCCCCccccCCccCHHHH
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLP-----QNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~-----~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (236)
.+.+|...|. .+ ... |.++++|++. ++.+|.. .- ..+...+++..|.+ +.|.+++.+|
T Consensus 745 v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~~-------~e~ee~~~~e~~~lvn~~n~l------~~~qv~~~e~ 810 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDG-GAASPEELLRCLMSLGYN-------TEEEEQGIAEWFRLVNKKNPL------IQGQVQLLEF 810 (890)
T ss_pred HHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCcc-------cchhHHHHHHHHHHHhccCcc------cccceeHHHH
Confidence 4566778889 99 777 9999999999 8876533 11 23566788888888 6899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHH
Q 026610 85 SKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQN 150 (236)
Q Consensus 85 ~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~ 150 (236)
..-|.+= -..+..+ --+-.+|+.+=+++. +|..+||+.
T Consensus 811 ~ddl~R~-----------------------~e~l~~~----~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 811 EDDLERE-----------------------YEDLDTE----LRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HhHhhhh-----------------------hhhhcHH----HHHHHHHHHHHcchh-HHHHHHHHh
Confidence 5544330 0111111 137778888888876 889999986
No 143
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=40.38 E-value=2.1e+02 Score=23.59 Aligned_cols=34 Identities=6% Similarity=-0.104 Sum_probs=24.5
Q ss_pred CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHh
Q 026610 25 TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKH 64 (236)
Q Consensus 25 d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~ 64 (236)
--| |.+|.+|+..+...... +++++.....++..
T Consensus 35 kAD-G~Vse~Ei~~~~~~m~~-----~~L~~e~~~~aie~ 68 (150)
T cd07311 35 KGD-GVISPEERDWAIGYAAA-----RGGDADMVEELKEY 68 (150)
T ss_pred HcC-CCCCHHHHHHHHHHHHH-----cCCCHHHHHHHHHh
Confidence 457 99999999875444333 35778788888887
No 144
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=39.21 E-value=47 Score=37.42 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=46.1
Q ss_pred cccc-CC-CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 19 QPLA-LP-TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 19 ~~F~-lD-d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
..|+ .| |+. |.||+.++...++.. -..+..+++-++.-...| .+..++|++|..-+.+
T Consensus 4061 dtfkeydpdgk-giiskkdf~kame~~-------k~ytqse~dfllscae~d------end~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGK-GIISKKDFHKAMEGH-------KHYTQSEIDFLLSCAEAD------ENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCC-ccccHHHHHHHHhcc-------ccchhHHHHHHHHhhccC------ccccccHHHHHHHhcC
Confidence 7799 99 999 999999999954422 135567888888888888 6889999999877655
No 145
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.99 E-value=35 Score=20.63 Aligned_cols=17 Identities=12% Similarity=0.390 Sum_probs=14.8
Q ss_pred CcccCHHHHHHHHHHHH
Q 026610 182 EEELGQAQFTELLRQVL 198 (236)
Q Consensus 182 DG~Id~eEF~~lm~~il 198 (236)
.|.||.+||.+.-+++|
T Consensus 14 ~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 14 KGEISEEEYEQKKARLL 30 (31)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 58899999999888776
No 146
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.29 E-value=46 Score=27.75 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 124 FTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 124 f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
+...+ -+|.....| |.+|..|.+.+..-+...+|++ .+.++.+++-...-+...+|+--|..-|+
T Consensus 29 lAa~~-Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~----~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 29 LAAAA-LLFHVMEAD--GTVSESEREAFRAILKENFGID----GEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHH-HHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444 678888886 8899999885544444467887 45566666654444555667777766665
No 147
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=38.24 E-value=33 Score=34.96 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=42.6
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHH
Q 026610 126 MLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQF 190 (236)
Q Consensus 126 ~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF 190 (236)
..+..+|..+|..++|.||-.++-..|..+.. |. ..+.+.=+++-||.++| ..+.+|=
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--~~----~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--GD----ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--hh----HHHHHHHHHhhccCCcc-ccccccc
Confidence 36899999999999999999999999987542 21 13345566677777777 6665554
No 148
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.60 E-value=50 Score=27.51 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=39.5
Q ss_pred CCCCCcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 25 TSDSSTVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 25 d~d~G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
+-| |+++.+|...+..+-.. . +++++.++..++.....- +...|||..|...|++
T Consensus 40 ~AD-G~v~~~E~~a~r~il~~--~--f~i~~~~l~ali~~~e~~------~~Ea~d~y~fts~l~r 94 (148)
T COG4103 40 EAD-GTVSESEREAFRAILKE--N--FGIDGEELDALIEAGEEA------GYEAIDLYSFTSVLKR 94 (148)
T ss_pred hcc-cCcCHHHHHHHHHHHHH--H--cCCCHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHH
Confidence 456 88999998874443222 2 457888999888887655 5789999999776654
No 149
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=35.76 E-value=49 Score=24.35 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=33.7
Q ss_pred HhcCCCCcccCHHHHHHHH-----HHHHHHHHHHhccCCeEEeeccccccChhhHH
Q 026610 176 KHGAEGEEELGQAQFTELL-----RQVLQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (236)
Q Consensus 176 e~D~d~DG~Id~eEF~~lm-----~~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~ 226 (236)
.+..+.+|-|..+.+..+= ... ..++..|..+|++.+. .||..|||
T Consensus 26 ~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~----~d~~~VRR 76 (76)
T cd08029 26 LTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVS----EDGENVRR 76 (76)
T ss_pred HhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEe----CCCCcccC
Confidence 3555778888777665332 232 7889999999999888 88888875
No 150
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=35.33 E-value=2.7e+02 Score=23.45 Aligned_cols=95 Identities=19% Similarity=0.384 Sum_probs=55.8
Q ss_pred EeccchhhhhcCCcchHHHHHHHHH-hhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHH-----------
Q 026610 108 VLDGNMLKLFLGNEDDFTMLAENLF-ADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK----------- 175 (236)
Q Consensus 108 ~ldgs~l~~~l~de~~f~~~l~~aF-~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~----------- 175 (236)
-+|...+-+|+..+..++..+..+| +.||-.+--. -+-||.+|.++ .+| ++...++.|+.
T Consensus 46 ~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~i--~~ALR~~l~~f----~lp--gE~Q~Idrile~Fs~~y~~~Np 117 (185)
T cd00171 46 GLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLRL--DEALRKFLQSF----RLP--GEAQKIDRLLEKFSERYCECNP 117 (185)
T ss_pred CCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHhc----cCC--chHHHHHHHHHHHHHHHHHHCC
Confidence 3577778888888876776554444 4455543222 22377666553 222 12233443333
Q ss_pred -----------------------HhcCCCCcccCHHHHHHHHH----------HHHHHHHHHhccCCe
Q 026610 176 -----------------------KHGAEGEEELGQAQFTELLR----------QVLQDIVDALADKHI 210 (236)
Q Consensus 176 -----------------------e~D~d~DG~Id~eEF~~lm~----------~il~~~a~~L~~~Pv 210 (236)
-|.++...+.++++|..+++ +.|..+=+.+..+|+
T Consensus 118 ~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 118 GIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred CCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 24445556789999999887 456666666666664
No 151
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=34.16 E-value=51 Score=24.68 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=35.1
Q ss_pred HHhcCCCCcccCHHHHHHH-----HHHHHHHHHHHhccCCeEEeeccccccChhhHH
Q 026610 175 KKHGAEGEEELGQAQFTEL-----LRQVLQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (236)
Q Consensus 175 ~e~D~d~DG~Id~eEF~~l-----m~~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~ 226 (236)
+.++.+.||-|..+-+..+ |......++..|..+|++-+. .||..|||
T Consensus 30 ~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~----ed~~~VRR 82 (82)
T cd08032 30 EQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELN----LEGTRIRR 82 (82)
T ss_pred HHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEc----CCCCccCC
Confidence 3577778899876666532 223346789999999999888 88888775
No 152
>PF13362 Toprim_3: Toprim domain
Probab=32.64 E-value=60 Score=23.90 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=51.5
Q ss_pred HHHHh-hcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCC--CcccHHHHHHHHhccCccCC-CCCCCChH
Q 026610 93 TAIAD-ELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDE--GKVCKGEIQNALGHMGVEFG-VPPFSEFP 168 (236)
Q Consensus 93 ~~iA~-~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~s--G~IS~~ELr~~l~~~~~~~G-lpp~~~~~ 168 (236)
.+++. ......-++++++.+.++.+...+. ...+.=..|.|.. |.-....+...+...|...- ++|.....
T Consensus 10 tals~~~~~~~~~~~a~~~~~nl~~~~~~~~-----~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~~g~ 84 (96)
T PF13362_consen 10 TALSIAQQATGVPVVAALGAGNLKNVAIPEP-----GRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGPEGK 84 (96)
T ss_pred HHHHHHHhcCCCeEEEEEChhhhhhhcCCCC-----CCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCCCCc
Confidence 34444 4444555678888888887766643 5666777899988 87777777777766543222 23312234
Q ss_pred HHHHHHHHhcC
Q 026610 169 QLNDILKKHGA 179 (236)
Q Consensus 169 ~~~~i~~e~D~ 179 (236)
.|++++.+...
T Consensus 85 D~ND~l~~~G~ 95 (96)
T PF13362_consen 85 DWNDLLQARGK 95 (96)
T ss_pred hHHHHHHhhCC
Confidence 67887776543
No 153
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=82 Score=25.07 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=45.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL 198 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il 198 (236)
..+.+|-.+..-++-..|...|+.+|++.|.+. +.+.++.+|+++. |+ +-+|-.+-=++-|
T Consensus 2 kyvaAYLL~~lgGn~~psa~DikkIl~sVG~E~------d~e~i~~visel~----GK-~i~ElIA~G~ekl 62 (112)
T KOG3449|consen 2 KYVAAYLLAVLGGNASPSASDIKKILESVGAEI------DDERINLVLSELK----GK-DIEELIAAGREKL 62 (112)
T ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc------CHHHHHHHHHHhc----CC-CHHHHHHHhHHHH
Confidence 367888899999999999999999999988663 3678899999873 22 5555444433333
No 154
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=32.38 E-value=51 Score=18.47 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=12.9
Q ss_pred cCCCCcccCHHHHHHHHHH
Q 026610 178 GAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 178 D~d~DG~Id~eEF~~lm~~ 196 (236)
|.|+||.|+--.|.-+-+-
T Consensus 1 DvN~DG~vna~D~~~lk~y 19 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKKY 19 (21)
T ss_dssp -TTSSSSSSHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHH
Confidence 5789999987776655443
No 155
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=32.19 E-value=1.1e+02 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.1
Q ss_pred CChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHH
Q 026610 53 LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYI 92 (236)
Q Consensus 53 ~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l 92 (236)
+|+.....+...++.= +.+.|+.+||.+.||.|.
T Consensus 22 l~~~~~~~l~~~Y~~~------k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEF------KKKKISREEFVRKLRQIV 55 (70)
T ss_pred CCHHHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHH
Confidence 6666666565555433 688999999999999863
No 156
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=31.70 E-value=1.1e+02 Score=22.52 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=35.3
Q ss_pred HhcCCCCcccCHHHHHHH--HHH---HHHHHHHHhccCCeEEeeccccccChhhHH
Q 026610 176 KHGAEGEEELGQAQFTEL--LRQ---VLQDIVDALADKHIIIIPNIKIIDGSKLRM 226 (236)
Q Consensus 176 e~D~d~DG~Id~eEF~~l--m~~---il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~ 226 (236)
++..|.+|-|...-+... |+. -...++..|..++++.+. .||..|||
T Consensus 26 ~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~----~d~~~VRR 77 (77)
T cd08033 26 HVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVS----EDGKKVRR 77 (77)
T ss_pred HhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEc----CCCCccCC
Confidence 466678899977766533 333 368899999999998888 78887775
No 157
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=31.65 E-value=24 Score=31.24 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcc-------hHHHH---HHHHHhhhCCC-CCCcccHHHHH
Q 026610 81 RDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNED-------DFTML---AENLFADLDTE-DEGKVCKGEIQ 149 (236)
Q Consensus 81 ~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~-------~f~~~---l~~aF~~~D~d-~sG~IS~~ELr 149 (236)
.+||-.-|++.|-.+-.+|... ..|.+.-.+|+ .|++- +.=-|-++|.- .+|++|..||.
T Consensus 141 ltefp~rm~dwl~~vl~~l~~r---------~el~~~~~~e~~~ea~~~d~~k~i~pv~wqf~qld~~p~d~~~sh~el~ 211 (259)
T KOG4004|consen 141 LTEFPLRMRDWLKNVLVTLYER---------DELTEKHENEKRLEAGDHDFEKYIFPVHWQFGQLDQHPIDGYLSHTELA 211 (259)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhcccccccceeeeeeeeeccccCCCccccccccccc
Confidence 5788888888777777666651 11122222221 22221 11236777764 59999999998
Q ss_pred HHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHH
Q 026610 150 NALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTEL 193 (236)
Q Consensus 150 ~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~l 193 (236)
++-.. +-|. ..-+...|+-.|.|+||-|+..|...-
T Consensus 212 pl~ap------~ipm--e~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 212 PLRAP------LIPM--EHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred cccCC------cccH--HhhchhhhhcccCCCCCceeHHHhhcc
Confidence 55322 2222 224567888999999999999998654
No 158
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=31.30 E-value=1.3e+02 Score=18.34 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=16.7
Q ss_pred cccHHHHHHHHhccCccCCCCCCCChH
Q 026610 142 KVCKGEIQNALGHMGVEFGVPPFSEFP 168 (236)
Q Consensus 142 ~IS~~ELr~~l~~~~~~~Glpp~~~~~ 168 (236)
..+..+|+..+.. .|+|..+.-.
T Consensus 3 ~l~~~~Lk~~l~~----~gl~~~G~K~ 25 (35)
T smart00513 3 KLKVSELKDELKK----RGLSTSGTKA 25 (35)
T ss_pred cCcHHHHHHHHHH----cCCCCCCCHH
Confidence 5788999999877 5677665543
No 159
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=31.23 E-value=1e+02 Score=19.00 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=17.0
Q ss_pred cccHHHHHHHHhccCccCCCCCCCChHH
Q 026610 142 KVCKGEIQNALGHMGVEFGVPPFSEFPQ 169 (236)
Q Consensus 142 ~IS~~ELr~~l~~~~~~~Glpp~~~~~~ 169 (236)
.++..||+..+.+ .|+|..+.-..
T Consensus 3 ~l~v~eLk~~l~~----~gL~~~G~K~~ 26 (35)
T PF02037_consen 3 KLTVAELKEELKE----RGLSTSGKKAE 26 (35)
T ss_dssp TSHHHHHHHHHHH----TTS-STSSHHH
T ss_pred cCcHHHHHHHHHH----CCCCCCCCHHH
Confidence 4678999999988 56777666443
No 160
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.99 E-value=66 Score=31.33 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=43.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFT 191 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~ 191 (236)
..+++|-.+-. -+|+||-..-+.-|.+ .-+| ..++-.|.+-.|.|.||.+|-+||.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~----sklp----nsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVK----SKLP----NSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHh----ccCc----hhHHHhhhhhhcCCcccCcCHHHHH
Confidence 37788888865 3689988777766644 3355 5678899999999999999999995
No 161
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=29.67 E-value=68 Score=31.99 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=73.0
Q ss_pred EeccchhhhhcCCcchHHHHHHHHHh-----------hhCCCC--------------CCc-ccHHHHHHHHhccCc----
Q 026610 108 VLDGNMLKLFLGNEDDFTMLAENLFA-----------DLDTED--------------EGK-VCKGEIQNALGHMGV---- 157 (236)
Q Consensus 108 ~ldgs~l~~~l~de~~f~~~l~~aF~-----------~~D~d~--------------sG~-IS~~ELr~~l~~~~~---- 157 (236)
+-.++..+.|++|+++ ..+.|+ ++|.|| .|. ++..||+.+|-.+..
T Consensus 384 vrg~~imkGY~~Npea----T~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~ea 459 (537)
T KOG1176|consen 384 VRGPQVMKGYLKNPEA----TKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEA 459 (537)
T ss_pred EECcccchhhcCChHH----HHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEE
Confidence 4455667889999983 444555 466664 233 567777777755321
Q ss_pred -cCCCCCCCChHHHHHHHHHhc-CCCCcccCHHHHHHHHHHHHHHHHHHhccCCeEEeeccccccChhhHHhhhCCC
Q 026610 158 -EFGVPPFSEFPQLNDILKKHG-AEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDHWKKP 232 (236)
Q Consensus 158 -~~Glpp~~~~~~~~~i~~e~D-~d~DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~~~~~k~ 232 (236)
-.|+| ++.|-+.-.-+- ...+..++.+|-++.+++-+-. .++-..=+++-.=.|+-+|+-+|+.++..+
T Consensus 460 aVvgip----De~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~--y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~ 530 (537)
T KOG1176|consen 460 AVVGIP----DEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPA--YKLPGGVVFVDELPKTPNGKILRRKLRDIA 530 (537)
T ss_pred EEEccc----ccccCCcceEEEEecCCCcCCHHHHHHHHHhhCCh--hhccCeEEEeccCCCCCcchHHHHHHHHHH
Confidence 13444 333333322211 2226778999999999987776 566555555557789999999999998643
No 162
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=28.65 E-value=3.3e+02 Score=22.28 Aligned_cols=24 Identities=0% Similarity=-0.074 Sum_probs=16.9
Q ss_pred ccCHHHHHHHHHHHHHHHHhhcCC
Q 026610 78 EFDRDHASKLASDYITAIADELKD 101 (236)
Q Consensus 78 ~I~~~EF~~~l~~~l~~iA~~L~~ 101 (236)
+|+|+||...+..+...+-..-+.
T Consensus 48 ~Is~~ef~~~v~~~~~~~k~~~g~ 71 (145)
T PF13623_consen 48 KISYQEFQQRVEQATENYKQQNGR 71 (145)
T ss_pred EcCHHHHHHHHHHHHHHHHHHcCC
Confidence 799999988888875555443333
No 163
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.54 E-value=2.2e+02 Score=29.02 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=44.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhc-------CCCCcccCHHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHG-------AEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D-------~d~DG~Id~eEF~~lm~~ 196 (236)
.+..+|..+-.++ +.+|.++|+.+|... ++.+.....+.+..++.++- .-+.+.++.+.|..+|..
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~~---Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAEE---GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHh---CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 5999999995444 899999999999773 43332212345566665431 123456999999997753
No 164
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=28.17 E-value=3.6e+02 Score=22.66 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=25.6
Q ss_pred EeccchhhhhcCCcchHHHHHHHHH-hhhCCCCCCcccHHHHHHHHhc
Q 026610 108 VLDGNMLKLFLGNEDDFTMLAENLF-ADLDTEDEGKVCKGEIQNALGH 154 (236)
Q Consensus 108 ~ldgs~l~~~l~de~~f~~~l~~aF-~~~D~d~sG~IS~~ELr~~l~~ 154 (236)
-+|...+-+|+.....++..+-..| +.||--+--.. +=||..|.+
T Consensus 47 ~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~i~--~ALR~~l~~ 92 (187)
T smart00222 47 GLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKDLD--QALREFLES 92 (187)
T ss_pred CCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCcHH--HHHHHHHHh
Confidence 3577778888886555665554444 44454332222 236766655
No 165
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=27.73 E-value=83 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 170 LNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 170 ~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
+..||..+-. +.+.++.++|...|+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~ 26 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLR 26 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHH
Confidence 4567777744 567777777777776
No 166
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=27.70 E-value=7.1e+02 Score=25.90 Aligned_cols=56 Identities=4% Similarity=0.081 Sum_probs=35.2
Q ss_pred HHHHHHHHH-hcCCCCc-----ccCHHHHHHHHHHHHHHHHHH--hccCCeEEeeccccccChhhHHhhhC
Q 026610 168 PQLNDILKK-HGAEGEE-----ELGQAQFTELLRQVLQDIVDA--LADKHIIIIPNIKIIDGSKLRMDHWK 230 (236)
Q Consensus 168 ~~~~~i~~e-~D~d~DG-----~Id~eEF~~lm~~il~~~a~~--L~~~Pv~v~~~~~~~dG~~~~~~~~~ 230 (236)
+.|++++.+ +-....| .++.+.-.+++.++-..+... -+..||++.+ ..+|+++|+
T Consensus 601 p~~E~~l~~~i~~~~~g~~l~~~l~p~~~~~l~~~~~~~~~~~~~~g~~pvll~s-------~~iR~~lr~ 664 (694)
T PRK12792 601 NRWDLAFHQSLKRDAKGEVVEFDIDPRLVEQFGTEASEAIRERMDQGHQFVLVTA-------PEARPYVRM 664 (694)
T ss_pred HHHHHHHHHHHhcccCCCccccCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEcC-------HHHHHHHHH
Confidence 467777664 3222233 377788777777777766643 4566888877 457777654
No 167
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=87 Score=30.53 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=41.7
Q ss_pred cccc-CCCCCCCcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHH
Q 026610 19 QPLA-LPTSDSSTVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHA 84 (236)
Q Consensus 19 ~~F~-lDd~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF 84 (236)
++|- |---+ |+||..--+. +..+ .+|...+-.+-+..|.| .+|.++-+||
T Consensus 448 e~fy~l~p~~-gk~sg~~ak~~mv~s---------klpnsvlgkiwklad~d------~dg~ld~eef 499 (532)
T KOG1954|consen 448 EIFYTLSPVN-GKLSGRNAKKEMVKS---------KLPNSVLGKIWKLADID------KDGMLDDEEF 499 (532)
T ss_pred hhhhcccccC-ceeccchhHHHHHhc---------cCchhHHHhhhhhhcCC------cccCcCHHHH
Confidence 5677 77667 8999888887 6553 48888899999999999 7999999999
No 168
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=27.39 E-value=42 Score=27.55 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=19.2
Q ss_pred HHHHHHHHhcC-------CCCcccCHHHHHHHHHHHH
Q 026610 169 QLNDILKKHGA-------EGEEELGQAQFTELLRQVL 198 (236)
Q Consensus 169 ~~~~i~~e~D~-------d~DG~Id~eEF~~lm~~il 198 (236)
.+..++++|.. +.++.|||+.|+..|+--|
T Consensus 26 klkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yL 62 (138)
T PF14513_consen 26 KLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYL 62 (138)
T ss_dssp -HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHH
Confidence 45666666632 3456899999999999443
No 169
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=27.18 E-value=51 Score=26.49 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=22.2
Q ss_pred CChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHH
Q 026610 53 LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLAS 89 (236)
Q Consensus 53 ~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~ 89 (236)
+++++.+.+-+++..| ..|.+.|-||+..|.
T Consensus 4 LtDeQFdrLW~e~Pvn------~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVN------AKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-------TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCC------ccCCEeHHHHHHHcc
Confidence 5688999999999999 699999999966654
No 170
>PLN02222 phosphoinositide phospholipase C 2
Probab=27.01 E-value=1.9e+02 Score=29.26 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcC-CCCcccCHHHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGA-EGEEELGQAQFTELLRQ 196 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~-d~DG~Id~eEF~~lm~~ 196 (236)
.+..+|..+-. ++.+|.++|+.+|... +|.+.. +.+...+||.++.. -..+.++.+.|..+|..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~---Q~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDV---QKQDKA-TREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHh---cCCccC-CHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 58999999854 4799999999999773 454332 24567788887532 23567999999998864
No 171
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=27.00 E-value=22 Score=27.88 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 026610 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELL 194 (236)
Q Consensus 140 sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm 194 (236)
||.++.+|++.+..-+....++|| ...++++..++.-....+++.+|...+
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSP----EEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSC----HHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 588998888866555433445543 233444444443333355666665444
No 172
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=26.71 E-value=2.8e+02 Score=21.03 Aligned_cols=50 Identities=18% Similarity=0.431 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHhchhccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHH
Q 026610 29 STVTGAQLLDFAENEASSSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASD 90 (236)
Q Consensus 29 G~is~~EL~~l~~~~~~~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~ 90 (236)
-.||..||+++++ -+|.++++.+...+++-+-.+ .=...+-+|=..++++
T Consensus 13 n~iT~~eLlkysk------qy~i~it~~QA~~I~~~lr~k------~inIfn~~~r~~llke 62 (85)
T PF11116_consen 13 NNITAKELLKYSK------QYNISITKKQAEQIANILRGK------NINIFNEQERKKLLKE 62 (85)
T ss_pred hcCCHHHHHHHHH------HhCCCCCHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHH
Confidence 3689999999765 256788988888888777666 2233455555555555
No 173
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=26.63 E-value=6.7e+02 Score=26.03 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcC-CCCc---ccCHHHHHHHHHHHHHHHHHHhccCCeEEeeccccccChhhHHhhhC
Q 026610 167 FPQLNDILKKHGA-EGEE---ELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDHWK 230 (236)
Q Consensus 167 ~~~~~~i~~e~D~-d~DG---~Id~eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~~~~~ 230 (236)
++.|++.+.+.=. ...| .++-++..+++.++-..+... ..||++.+ ..+|+++|+
T Consensus 582 ~p~~E~~l~~~i~~~~~g~~~~l~P~~~~~l~~~~~~~~~~~--~~pVllts-------~~iR~~lr~ 640 (675)
T PRK12720 582 GEGIENLIRESIRQTSAGTYSALSSRHSTQILQLIEQALKQS--QKLVLVTS-------VDVRRFLRK 640 (675)
T ss_pred CHHHHHHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHHcc--CCcEEEeC-------HHHHHHHHH
Confidence 3467777765322 1233 377777777776665555444 67988887 457777654
No 174
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=26.39 E-value=5.4e+02 Score=24.05 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHHhhhC-CC------CCCcc---cHHHHH
Q 026610 80 DRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLFADLD-TE------DEGKV---CKGEIQ 149 (236)
Q Consensus 80 ~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF~~~D-~d------~sG~I---S~~ELr 149 (236)
.|++|.+.++.++..+++.++-. =||++ +-=|.+.|.+.+.+.-..+- .+ ..+.+ |..|.+
T Consensus 131 ~YTd~yQ~fn~~lSkls~~IsaG------~DGn~---VkFd~~~lk~~l~~~~~Ky~~~~~~~pa~~~~~i~~~s~~Ea~ 201 (308)
T TIGR02553 131 GYTDFYQAFSDILSKMQDWISPG------KDGNN---VKLDVGKLKALLQQLIDHLPNQINSFPAQSDGGMQLPKEADAR 201 (308)
T ss_pred HHHHHHHHHHHHHHHHhhhcccC------CCCCe---eeeCHHHHHHHHHHHHHHhccCccCCccccccccccCcHHHHH
Confidence 38999999999999998887742 24444 11223334444433332222 11 11333 456677
Q ss_pred HHHhccCccCCCCCC-----C------ChHHHHHHHHHhcCCCCc---ccCHHHHHHHHH
Q 026610 150 NALGHMGVEFGVPPF-----S------EFPQLNDILKKHGAEGEE---ELGQAQFTELLR 195 (236)
Q Consensus 150 ~~l~~~~~~~Glpp~-----~------~~~~~~~i~~e~D~d~DG---~Id~eEF~~lm~ 195 (236)
.-...+| +|+. . +...|++|...++..++| .++-.+|.++..
T Consensus 202 ~W~keLg----~~v~~~~~~~~G~I~~dl~~i~~m~~sl~~~g~g~~~~~~~A~YQAWqA 257 (308)
T TIGR02553 202 RWRKELG----LPVSCLQISDSGVVTVDPTPLIKMRDDLPPLGTGTELEWDNAKYQAWQS 257 (308)
T ss_pred HHHHHhC----CCCccccccCCCeEEeChHHHHHHHHhcCCCCCCCcccccHHHHHHHHH
Confidence 6655543 3221 1 123588899988876655 467777765543
No 175
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=25.82 E-value=86 Score=23.17 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHH
Q 026610 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQV 197 (236)
Q Consensus 140 sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~i 197 (236)
||.++.+|++.+...+....++++.+ ...+.++|...-.+- -..+..++...++..
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFD-RERLIALLDKLLALL-RPEGLAALLKAAAKL 71 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCC-HHHHHHHHHHHHHHH-HHhhHHHHHHHHHHh
Confidence 57777777776655544333443322 233444444432220 122345555555443
No 176
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=25.77 E-value=1.6e+02 Score=23.01 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhccCCeE
Q 026610 171 NDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHII 211 (236)
Q Consensus 171 ~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~ 211 (236)
..+.+..-.-|=|..+.+|-.+.+++.+.+++..|+.+|-.
T Consensus 39 ~~~~~~l~~~G~gr~~~ee~~~~~~~~l~aLs~~Lg~~~~l 79 (126)
T cd03211 39 REARRKLKAIGWDDKTLDQVIEEVDQCCQALSQRLGTQPYF 79 (126)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 34555555556688899999999999999999999999954
No 177
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.22 E-value=1e+02 Score=29.22 Aligned_cols=69 Identities=13% Similarity=0.260 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhccCCeEEeeccccccC
Q 026610 143 VCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDG 221 (236)
Q Consensus 143 IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG 221 (236)
++.+||+.++.. +|.|+.-+...++.+.+. |..+++++..+=+..-..++....-.+..++.....-||
T Consensus 23 ~~~~el~~~~~~----~g~~~~r~~qi~~w~y~~------~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~ 91 (368)
T PRK14456 23 LRRQELTELLAR----LGEPAWRAAQLHQWLFSH------RALSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETMEG 91 (368)
T ss_pred CCHHHHHHHHHH----cCCCchHHHHHHHHHHHc------CCCCHHHhccccHHHHHHHhcceecCCcceEEEEeeccC
Confidence 688999999876 567765444455555554 345799999888888788888777777666654444455
No 178
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.00 E-value=1.5e+02 Score=30.28 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCC--CCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHH-H
Q 026610 123 DFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGV--PPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVL-Q 199 (236)
Q Consensus 123 ~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Gl--pp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il-~ 199 (236)
.++..++..|.+.|. .+|.++.+|++..+...-....+ .-....+.-..++.+.|.++.|-+.++.+.-++..+- .
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~~~~ 93 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQIPTL 93 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhchHH
Confidence 366779999999999 89999999999888653211111 0000123556888899999999888888888887333 4
Q ss_pred HHHHHhc
Q 026610 200 DIVDALA 206 (236)
Q Consensus 200 ~~a~~L~ 206 (236)
.++-++.
T Consensus 94 ~~~~~~~ 100 (646)
T KOG0039|consen 94 LFAILLS 100 (646)
T ss_pred HHHHHHH
Confidence 4554443
No 179
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.87 E-value=69 Score=30.86 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=48.6
Q ss_pred EEEEeccchhhhhcCCcchHHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcc
Q 026610 105 VVCVLDGNMLKLFLGNEDDFTMLAENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEE 184 (236)
Q Consensus 105 vva~ldgs~l~~~l~de~~f~~~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~ 184 (236)
++...|++.....-.++ -++++|+..|..++|+||.+-++.++..++. +.++.+.+.-+=+.+|+.+=|-
T Consensus 293 vlfs~d~~l~~~~~~s~-----q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~-----~vse~a~v~l~~~~l~pE~~~i 362 (449)
T KOG2871|consen 293 VLFSCDGHLVVPENPSE-----QLRRNFHAYDPEDNNFISCSGLQIVMTALNR-----LVSEPAYVMLMRQPLDPESLGI 362 (449)
T ss_pred EEEecCccccCCCCCCH-----HHHhhhhccCccCCCeeecHHHHHHHHHhcc-----cccCHHHHHHhcCccChhhcce
Confidence 33356766544444455 4999999999999999999999998876541 1222333333333466665555
Q ss_pred cCHHHHH
Q 026610 185 LGQAQFT 191 (236)
Q Consensus 185 Id~eEF~ 191 (236)
|-.+.|.
T Consensus 363 il~~d~l 369 (449)
T KOG2871|consen 363 ILLEDFL 369 (449)
T ss_pred EEecccc
Confidence 5444443
No 180
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=24.51 E-value=2.2e+02 Score=19.60 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHh
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKH 177 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~ 177 (236)
++++++.|.++...=||.+|...-..+.|.. -+|+......|..+++++
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N-~l~~~~~~s~~~~~~~~f 54 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKYGPN-ELPEPKKKSLWRIFLKQF 54 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHHSSS-STTTTTSSSHHHHHHHHT
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhcccc-cccccccCcHHHHHHHHH
Confidence 6778888887777778888888888776653 244433345677777665
No 181
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=24.19 E-value=1.5e+02 Score=22.18 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=32.3
Q ss_pred hcCCCCcccCHHHHHHH--HHHH---HHHHHHHhccCC--eEEeeccccccChhhHH
Q 026610 177 HGAEGEEELGQAQFTEL--LRQV---LQDIVDALADKH--IIIIPNIKIIDGSKLRM 226 (236)
Q Consensus 177 ~D~d~DG~Id~eEF~~l--m~~i---l~~~a~~L~~~P--v~v~~~~~~~dG~~~~~ 226 (236)
++.+ +|-|..+.+... |+.+ ...++..|..++ ++.+. .||..|||
T Consensus 31 m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~----~d~~~VRR 82 (82)
T cd08028 31 IKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVS----EDKTKIRR 82 (82)
T ss_pred Hhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEc----CCCCccCC
Confidence 4444 888887777643 3333 577888888888 88888 88888775
No 182
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=24.04 E-value=3.2e+02 Score=22.15 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=45.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHH-------HhcCCCCc------ccCHHHHHHHH
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILK-------KHGAEGEE------ELGQAQFTELL 194 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~-------e~D~d~DG------~Id~eEF~~lm 194 (236)
++-.|.-+- .+|.+|.+||.+.|++--.. ....+++++. +...++.| .++++|.+..+
T Consensus 30 v~v~~~LL~--~~~~~tvdelae~lnr~rSt-------v~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i 100 (126)
T COG3355 30 VEVYKALLE--ENGPLTVDELAEILNRSRST-------VYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKI 100 (126)
T ss_pred HHHHHHHHh--hcCCcCHHHHHHHHCccHHH-------HHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHH
Confidence 444444443 56899999999998662100 0112334333 12224444 67999999999
Q ss_pred HHHHHHHHHHhcc
Q 026610 195 RQVLQDIVDALAD 207 (236)
Q Consensus 195 ~~il~~~a~~L~~ 207 (236)
.+.+...+..++.
T Consensus 101 ~~~l~~w~~~~~~ 113 (126)
T COG3355 101 LKDLDEWYDKMKQ 113 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 183
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=23.88 E-value=3.6e+02 Score=24.70 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=17.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCcc
Q 026610 128 AENLFADLDTEDEGKVCKGEIQNALGHMGVE 158 (236)
Q Consensus 128 l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~ 158 (236)
+..+...|.+-++-.|. .+|..+|......
T Consensus 5 ~~~~l~~f~~~k~~~l~-~~L~~il~~ia~t 34 (288)
T PF09184_consen 5 LLDALENFMKIKSKELP-PELEDILEHIAKT 34 (288)
T ss_pred HHHHHHHhcCCCcccHH-HHHHHHHHHHHhh
Confidence 55666666655544443 4666666665543
No 184
>PF07273 DUF1439: Protein of unknown function (DUF1439); InterPro: IPR010835 This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3L6I_B.
Probab=23.68 E-value=1.1e+02 Score=25.05 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCeEEeeccccccChhhHHhh
Q 026610 188 AQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGSKLRMDH 228 (236)
Q Consensus 188 eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG~~~~~~~ 228 (236)
.+...+...+...++.-|..+||+....++ .....++++.
T Consensus 104 ~~l~~l~~~l~~~l~~~l~~~PVY~L~~~~-~~e~l~k~~~ 143 (152)
T PF07273_consen 104 GQLQPLIPYLNQSLAQYLENQPVYTLDPED-PKEALAKKMP 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCCS-SEE--TTS-HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCccc-HHHHHHHhcc
Confidence 446667778889999999999999988666 4445555443
No 185
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.37 E-value=1.1e+02 Score=20.13 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=20.2
Q ss_pred CcccHHHHHH-HHHhchhccccCCCCChhHHHHHHHhh
Q 026610 29 STVTGAQLLD-FAENEASSSLFGLSLPQNLKSTALKHI 65 (236)
Q Consensus 29 G~is~~EL~~-l~~~~~~~~~~g~~~~~~~~~~il~~~ 65 (236)
|.|+ |+++ +.++.. .|+-+++..++.+++..
T Consensus 16 GlI~--~~~~~l~~l~~----~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 16 GLIS--EVKPLLDRLQQ----AGFRISPKLIEEILRRA 47 (48)
T ss_pred CChh--hHHHHHHHHHH----cCcccCHHHHHHHHHHc
Confidence 6776 6666 544432 36668888888887753
No 186
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=23.10 E-value=2.7e+02 Score=19.51 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEeccch
Q 026610 81 RDHASKLASDYITAIADELKDDPLVVCVLDGNM 113 (236)
Q Consensus 81 ~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~ 113 (236)
+...-+.+++++..+|..+.. ++.++.+|-..
T Consensus 28 ~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~ 59 (103)
T PF00085_consen 28 WCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE 59 (103)
T ss_dssp TSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT
T ss_pred CCCccccccceeccccccccc-ccccchhhhhc
Confidence 345566678888889999888 88999999543
No 187
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=23.08 E-value=1.1e+02 Score=22.22 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 169 QLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 169 ~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
.++.+.+-++.=..++|+.+||...||.|.+
T Consensus 26 ~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 26 KMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3444444444445788999999999997765
No 188
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.69 E-value=1.8e+02 Score=22.19 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=47.4
Q ss_pred CcccHHHHHH-HHHhchh--ccccCCCCChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeE
Q 026610 29 STVTGAQLLD-FAENEAS--SSLFGLSLPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLV 105 (236)
Q Consensus 29 G~is~~EL~~-l~~~~~~--~~~~g~~~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~piv 105 (236)
-+.|++||+. +..++.+ ...-.+++++..++.+|+-= .+.+ +-.=.+|+||......=+..|+-
T Consensus 8 ~~~T~~ELq~nf~~~~ls~~~ia~dL~~s~~~le~vL~l~----------~~~~---~~vW~lRdyL~~~i~~~G~eP~P 74 (89)
T PF10078_consen 8 RRATRQELQANFELSGLSLEQIAADLGTSPEHLEQVLNLK----------QPFP---EDVWILRDYLNDKIKEQGKEPVP 74 (89)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC----------CCCc---ccchHHHHHHHHHHHHcCCCCCC
Confidence 3578899998 8766533 11224456677788777652 1111 22336899999999999999988
Q ss_pred EEEeccch
Q 026610 106 VCVLDGNM 113 (236)
Q Consensus 106 va~ldgs~ 113 (236)
-..+-|..
T Consensus 75 fS~L~g~~ 82 (89)
T PF10078_consen 75 FSALKGDP 82 (89)
T ss_pred eeeeCCCc
Confidence 77776654
No 189
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.58 E-value=1.6e+02 Score=27.25 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhccCCeEEeeccccc-cC
Q 026610 143 VCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKII-DG 221 (236)
Q Consensus 143 IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~-dG 221 (236)
++.+||+.++.. +|.|+.-....|+.+++.. .-+++++..+=+..-..++....-.+..++.....- ||
T Consensus 7 ~~~~~~~~~~~~----~g~~~~r~~qi~~~~~~~~------~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~s~~d~ 76 (343)
T PRK14469 7 LSYEELVSEITE----LGLEKYRADQILDWIYKKK------VFNFDEMTNLSKDHRALLSEHFSIPFPKLLDKQVSKIDG 76 (343)
T ss_pred CCHHHHHHHHHH----cCCCchHHHHHHHHHHhcC------CCCHHHhccccHHHHHHHhhccccCCceEEEEEeccCCC
Confidence 678999999876 5777765444666666543 347999998888888888887766666665544332 55
Q ss_pred h
Q 026610 222 S 222 (236)
Q Consensus 222 ~ 222 (236)
.
T Consensus 77 t 77 (343)
T PRK14469 77 T 77 (343)
T ss_pred e
Confidence 3
No 190
>PLN02952 phosphoinositide phospholipase C
Probab=22.28 E-value=2.3e+02 Score=28.80 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=38.5
Q ss_pred CCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHH
Q 026610 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQ 196 (236)
Q Consensus 139 ~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~ 196 (236)
+.|.++-+|.+.+...+......| .+.+..+|.++-.+ ++.++.++|..++++
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~----r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEP----PDDVKDVFCKFSVG-GGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCC----hHHHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 468999999986665543222222 45799999999654 467999999999975
No 191
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=22.23 E-value=60 Score=26.98 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=26.5
Q ss_pred hHhhcccccc-CC-CCCCCcccHHHHHH-HHHhchhccccCCCCChh
Q 026610 13 QLRSLSQPLA-LP-TSDSSTVTGAQLLD-FAENEASSSLFGLSLPQN 56 (236)
Q Consensus 13 ~i~~l~~~F~-lD-d~d~G~is~~EL~~-l~~~~~~~~~~g~~~~~~ 56 (236)
.++.|.++.. +| .+- +++|.+||+. +-.+.-+ |.-.+|-+
T Consensus 67 ~Lq~L~~rL~~le~~rg-~Y~TiSeLKT~vy~i~q~---l~~~~P~E 109 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRG-KYMTISELKTAVYQIQQS---LNQSVPLE 109 (148)
T ss_pred HHHHHHHHHHHHHHhcC-CceeHHHHHHHHHHHHHH---hcCCCCHH
Confidence 5666666666 77 555 6699999999 5555433 34556643
No 192
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=22.11 E-value=1.4e+02 Score=28.19 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred ccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHH
Q 026610 143 VCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDI 201 (236)
Q Consensus 143 IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~ 201 (236)
-|++.|+.+-+.. -|+.|..= .-...|+-+|.|+||-++-.|.-+++++-|..|
T Consensus 224 GSkdQLkEVWEE~---DgLdpn~f--dPKTFF~LHD~NsDGfldeqELEaLFtkELEKv 277 (442)
T KOG3866|consen 224 GSKDQLKEVWEES---DGLDPNQF--DPKTFFALHDLNSDGFLDEQELEALFTKELEKV 277 (442)
T ss_pred CcHHHHHHHHHHh---cCCCcccC--CcchheeeeccCCcccccHHHHHHHHHHHHHHh
Confidence 4788888887663 35543211 113568889999999999999999999887766
No 193
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=22.03 E-value=1.1e+02 Score=22.39 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcC
Q 026610 139 DEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGA 179 (236)
Q Consensus 139 ~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~ 179 (236)
..|+||.++|..+|.... + +++.++.++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~----~----~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD----L----DPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----------HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccC----C----CHHHHHHHHHHHHH
Confidence 368999999999986422 2 25677777775443
No 194
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=21.98 E-value=1.7e+02 Score=24.21 Aligned_cols=35 Identities=14% Similarity=0.420 Sum_probs=28.8
Q ss_pred cCHHHHHHHHHHHHHHHHhhcCC-CCeEEEEeccch
Q 026610 79 FDRDHASKLASDYITAIADELKD-DPLVVCVLDGNM 113 (236)
Q Consensus 79 I~~~EF~~~l~~~l~~iA~~L~~-~pivva~ldgs~ 113 (236)
|+++++.+..+++...|+...+. .|++++++.|..
T Consensus 3 is~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~ 38 (166)
T TIGR01203 3 IPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSF 38 (166)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCH
Confidence 78999999999999999887653 567777888876
No 195
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=21.74 E-value=2.1e+02 Score=23.58 Aligned_cols=31 Identities=10% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHH----hcCCCCc-cc-CHHHHHHHHHHHHH
Q 026610 169 QLNDILKK----HGAEGEE-EL-GQAQFTELLRQVLQ 199 (236)
Q Consensus 169 ~~~~i~~e----~D~d~DG-~I-d~eEF~~lm~~il~ 199 (236)
...+||.| .|..|.- .| ||+|+..++-.|+.
T Consensus 21 l~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t 57 (141)
T PF12588_consen 21 LFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMT 57 (141)
T ss_pred HHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHh
Confidence 56788888 5555544 44 89999998888875
No 196
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.46 E-value=1.7e+02 Score=27.51 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhccCCeEEeeccccccCh
Q 026610 143 VCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGS 222 (236)
Q Consensus 143 IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG~ 222 (236)
++.+||+.++.. +|.|+.-+...|+.+.+. +.-+|+++..+=+..-..++....-.+..++.....-||.
T Consensus 10 l~~~el~~~~~~----~g~~~fra~Qi~~wi~~~------~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt 79 (345)
T PRK14466 10 MTLEELQSVAKR----LGMPAFAAKQIASWLYDK------KVTSIDEMTNISLAHREKLAEEYEIGAYAPVDEQRSVDGT 79 (345)
T ss_pred CCHHHHHHHHHH----cCCCchHHHHHHHHHHhc------CCCCHHHHhhhhHHHHHhhcCCeEecCceEEEEEEcCCCe
Confidence 688999999876 567766544456666643 3457999998888877777777666665555444444663
No 197
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.46 E-value=1.1e+02 Score=26.44 Aligned_cols=32 Identities=13% Similarity=0.436 Sum_probs=26.2
Q ss_pred HHHHHhcCCCCcccCHHHHHHHHHHHHHHHHH
Q 026610 172 DILKKHGAEGEEELGQAQFTELLRQVLQDIVD 203 (236)
Q Consensus 172 ~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~ 203 (236)
.++..+|.|+||..+.+|-..+-+.++..++.
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~~~~l~~ 85 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEIFDNLKE 85 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHHHhhhhh
Confidence 34557999999999999988888888777655
No 198
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=21.38 E-value=1.6e+02 Score=17.95 Aligned_cols=29 Identities=3% Similarity=0.063 Sum_probs=20.6
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHhccCCeE
Q 026610 182 EEELGQAQFTELLRQVLQDIVDALADKHII 211 (236)
Q Consensus 182 DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~ 211 (236)
.|.|+++|++.+..++..=+ +.=+..|=+
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~-~~ngRlPny 30 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFY-ESNGRLPNY 30 (33)
T ss_pred CceecHHHHHHHHHHHHHHH-HHcCCCCCe
Confidence 58899999999999987544 333444433
No 199
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=21.36 E-value=2.4e+02 Score=20.29 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 026610 140 EGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLR 195 (236)
Q Consensus 140 sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~ 195 (236)
+|+++-+|++..+++ .| ..++.+=+..+ ++-.+|++|+.
T Consensus 28 ~Gkv~~ee~n~~~e~------~p-----~~~~~lAk~~G------~t~~~l~~~~~ 66 (75)
T TIGR02675 28 SGKLRGEEINSLLEA------LP-----GALQALAKAMG------VTRGELRKMLS 66 (75)
T ss_pred cCcccHHHHHHHHHH------hH-----HHHHHHHHHhC------CCHHHHHHHHH
Confidence 578888888877755 22 23444444332 45666666654
No 200
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.36 E-value=1.3e+02 Score=18.75 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=12.4
Q ss_pred ccHHHHHHHHhccCccCCCCCC
Q 026610 143 VCKGEIQNALGHMGVEFGVPPF 164 (236)
Q Consensus 143 IS~~ELr~~l~~~~~~~Glpp~ 164 (236)
-|.++|+.-|.. +|+|++
T Consensus 4 Ws~~~L~~wL~~----~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKS----HGIPVP 21 (38)
T ss_pred CCHHHHHHHHHH----cCCCCC
Confidence 366889988887 555543
No 201
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.35 E-value=2e+02 Score=27.43 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=48.5
Q ss_pred ccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhccCCeEEeeccccccCh
Q 026610 143 VCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALADKHIIIIPNIKIIDGS 222 (236)
Q Consensus 143 IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~~Pv~v~~~~~~~dG~ 222 (236)
++.+||+..+.. +|.|+.-+...|+.+.+. +.-+++|+..+=+..-..++....-.+..++.....-||+
T Consensus 27 l~~~el~~~~~~----~g~~~~ra~Qi~~wiy~~------~~~~~~~mt~l~k~~r~~L~~~~~~~~~~~~~~~~s~dg~ 96 (373)
T PRK14459 27 LTPAERREAVAE----LGLPAFRAKQLARHYFGR------LTADPAQMTDLPAAAREELAEALFPTLLTPVRTLEADDGT 96 (373)
T ss_pred CCHHHHHHHHHH----cCCCcHHHHHHHHHHHhc------CCCCHHHhcccCHHHHHHHHhhcccCCceEEEEEEcCCCC
Confidence 788999999876 567765443455555553 3457999988877777777777776766666555555773
No 202
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=21.31 E-value=8.9e+02 Score=25.80 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=82.1
Q ss_pred CChhHHHHHHHhhcCCCCCccccCCccCHHHHHHHHHHHHHHHHhhcCCCCeEEEEeccchhhhhcCCcchHHHHHHHHH
Q 026610 53 LPQNLKSTALKHISGSDDDVTFRIKEFDRDHASKLASDYITAIADELKDDPLVVCVLDGNMLKLFLGNEDDFTMLAENLF 132 (236)
Q Consensus 53 ~~~~~~~~il~~~d~~~~~~~~~~g~I~~~EF~~~l~~~l~~iA~~L~~~pivva~ldgs~l~~~l~de~~f~~~l~~aF 132 (236)
+|=..+..++++++..+ ++...+-.+-.. -|+.+-+.|+.. ...++.=+=...+++.=.+
T Consensus 417 v~ltl~l~if~~h~l~~-----~~e~m~~~~~i~----~L~~~y~~l~e~-----------~g~~v~v~l~vD~~lN~ll 476 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQ-----NDQPMDILQIIN----CLTTIYDRLEQE-----------HGNLVNVPLCVDMCLNWLL 476 (966)
T ss_pred ccHHHHHHHHHHhcccc-----cCcCCCHHHHHH----HHHHHHHHHHHH-----------cccccccchHHHHHHHHHH
Confidence 34456788888888774 344555544433 234444455442 2224444445667787888
Q ss_pred hhhCCCCCCcccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHHHHHHHhcc
Q 026610 133 ADLDTEDEGKVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQDIVDALAD 207 (236)
Q Consensus 133 ~~~D~d~sG~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~~~a~~L~~ 207 (236)
..||..++|+|+.-+++.+|-.++. ++ ..+.|.-+|+.+-.++. .+++..|-.++-... .+-++||+
T Consensus 477 NvyD~~R~g~irvls~ki~~i~lck---~~---leek~~ylF~~vA~~~s-q~~q~~l~lLL~dli-qipr~lGE 543 (966)
T KOG4286|consen 477 NVYDTGRTGRIRVLSFKIGIISLCK---AH---LEDKYRYLFKQVASSTS-QCDQRRLGLLLHDLI-QIPRQLGE 543 (966)
T ss_pred HhcccCCCcceEEeeehhhHHHHhc---ch---hHHHHHHHHHHHcCchh-hHHHHHHHHHHHHHH-HHHHHHhH
Confidence 9999999999999999988877653 22 25678899999976554 455888877766433 34455554
No 203
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=21.01 E-value=2.4e+02 Score=22.37 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeccch
Q 026610 86 KLASDYITAIADELKDDPLVVCVLDGNM 113 (236)
Q Consensus 86 ~~l~~~l~~iA~~L~~~pivva~ldgs~ 113 (236)
+.++..+..+|...+.+|+..+.+|+..
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~ 67 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGA 67 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcc
Confidence 3345566679999999999999999776
No 204
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.79 E-value=1.4e+02 Score=23.12 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=27.3
Q ss_pred cccHHHHHHHHhccCccCCCCCCCChHHHHHHHHHhcCCCCcccCHHHHHHHHHHHHH
Q 026610 142 KVCKGEIQNALGHMGVEFGVPPFSEFPQLNDILKKHGAEGEEELGQAQFTELLRQVLQ 199 (236)
Q Consensus 142 ~IS~~ELr~~l~~~~~~~Glpp~~~~~~~~~i~~e~D~d~DG~Id~eEF~~lm~~il~ 199 (236)
.+|.+|+-.++..+....|++ .+.+...++. .| ++|++|+.-+|+-+.
T Consensus 66 ~vsd~evd~~i~~ia~~n~ls----~~ql~~~L~~---~G---~s~~~~r~~ir~~i~ 113 (118)
T PF09312_consen 66 KVSDEEVDEAIANIAKQNNLS----VEQLRQQLEQ---QG---ISYEEYREQIRKQIL 113 (118)
T ss_dssp ---HHHHHHHHHHHHHHTT------HHHHHHHCHH---CT-----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC----HHHHHHHHHH---cC---CCHHHHHHHHHHHHH
Confidence 367788888887766655653 3444444433 33 699999999987654
No 205
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=20.51 E-value=9.7e+02 Score=24.88 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=37.3
Q ss_pred hHHHHHHHHH-hcCCCCc---ccCHHHHHHHHHHHHHHHHHH--hccCCeEEeeccccccChhhHHhhhC
Q 026610 167 FPQLNDILKK-HGAEGEE---ELGQAQFTELLRQVLQDIVDA--LADKHIIIIPNIKIIDGSKLRMDHWK 230 (236)
Q Consensus 167 ~~~~~~i~~e-~D~d~DG---~Id~eEF~~lm~~il~~~a~~--L~~~Pv~v~~~~~~~dG~~~~~~~~~ 230 (236)
++.|++++.+ +-....| .++-+...++++++-..+... -+..||++.+ ..+|+++|+
T Consensus 587 ~p~~E~~l~~~i~~~~~g~~~~l~P~~~~~l~~~~~~~~~~~~~~g~~pvll~s-------~~iR~~lr~ 649 (678)
T TIGR01398 587 DPDLEAALAEALQRDGEGELLDLEPALLEELVRAVRKAVEKLANNGERPVLLTS-------PRVRPYVRR 649 (678)
T ss_pred CHHHHHHHHHHHhccCCCCccCcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC-------HHHHHHHHH
Confidence 3467777765 3222234 478888888888877777653 4556888877 457777654
No 206
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.33 E-value=1.1e+03 Score=25.62 Aligned_cols=68 Identities=12% Similarity=0.249 Sum_probs=50.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCccC--C--CCCCCChHHHHHHHHHhcCCCC----cccCHHHHHHHH
Q 026610 127 LAENLFADLDTEDEGKVCKGEIQNALGHMGVEF--G--VPPFSEFPQLNDILKKHGAEGE----EELGQAQFTELL 194 (236)
Q Consensus 127 ~l~~aF~~~D~d~sG~IS~~ELr~~l~~~~~~~--G--lpp~~~~~~~~~i~~e~D~d~D----G~Id~eEF~~lm 194 (236)
.++++|..+-.++.-++|+++|-.++...-... . +-|+-.+..+..+++.+-.|.+ |.++-+-|+-.+
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 399999999999889999999999997743211 1 2233356789999998877654 667777776544
No 207
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=20.19 E-value=2.2e+02 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHH----------HHHHHhccCCeEE
Q 026610 186 GQAQFTELLRQVLQ----------DIVDALADKHIII 212 (236)
Q Consensus 186 d~eEF~~lm~~il~----------~~a~~L~~~Pv~v 212 (236)
+++||+....+|-. .+++-|+-+|+++
T Consensus 102 ~deel~~~~e~i~~~v~~Gn~Sl~~lsr~l~~sp~fi 138 (160)
T PF09824_consen 102 SDEELRDYVEKIEKEVEAGNTSLSDLSRKLGISPVFI 138 (160)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCHHHH
Confidence 67888888887654 4567777777754
Done!