Query 026612
Match_columns 236
No_of_seqs 221 out of 1679
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 2.6E-28 5.6E-33 211.4 17.8 148 81-235 31-182 (223)
2 PF09335 SNARE_assoc: SNARE as 99.9 2.8E-21 6.1E-26 150.7 13.7 115 117-235 1-120 (123)
3 COG0586 DedA Uncharacterized m 99.8 5.4E-18 1.2E-22 145.5 14.2 136 96-235 15-160 (208)
4 PRK10847 hypothetical protein; 99.7 2.5E-17 5.4E-22 142.4 12.2 136 95-234 26-173 (219)
5 KOG3140 Predicted membrane pro 99.4 7.5E-13 1.6E-17 117.7 7.8 125 107-234 102-229 (275)
6 COG1238 Predicted membrane pro 99.4 2E-11 4.3E-16 100.9 13.4 138 89-234 10-151 (161)
7 PF06695 Sm_multidrug_ex: Puta 95.9 0.13 2.7E-06 40.6 10.3 96 130-229 14-119 (121)
8 PRK01844 hypothetical protein; 87.2 1.8 4E-05 31.1 5.1 29 132-160 3-31 (72)
9 TIGR02359 thiW thiW protein. L 82.9 20 0.00042 29.7 10.2 33 118-150 33-65 (160)
10 PRK00523 hypothetical protein; 82.4 4.1 8.9E-05 29.3 5.1 27 134-160 6-32 (72)
11 PF04246 RseC_MucC: Positive r 77.4 7.5 0.00016 30.7 5.8 39 122-160 80-120 (135)
12 PF03672 UPF0154: Uncharacteri 75.9 4.6 0.0001 28.4 3.7 23 138-160 2-24 (64)
13 PF07155 ECF-ribofla_trS: ECF- 74.6 5.1 0.00011 32.6 4.3 33 118-150 37-69 (169)
14 PRK11677 hypothetical protein; 72.7 8.1 0.00018 31.1 4.9 23 136-158 3-25 (134)
15 PRK09609 hypothetical protein; 72.2 47 0.001 30.5 10.2 16 57-72 7-22 (312)
16 COG3763 Uncharacterized protei 70.2 13 0.00028 26.6 4.9 35 133-170 4-38 (71)
17 PF08006 DUF1700: Protein of u 68.7 22 0.00048 29.4 6.9 31 134-165 142-172 (181)
18 PRK13661 hypothetical protein; 65.8 12 0.00025 31.7 4.6 32 118-149 39-70 (182)
19 COG3086 RseC Positive regulato 62.7 32 0.00069 28.2 6.4 37 124-160 90-127 (150)
20 PRK10862 SoxR reducing system 61.6 25 0.00054 28.8 5.7 25 136-160 103-127 (154)
21 PF06295 DUF1043: Protein of u 59.1 15 0.00032 29.1 3.9 22 138-159 1-22 (128)
22 PF12822 DUF3816: Protein of u 53.7 12 0.00026 30.2 2.6 32 118-149 30-61 (172)
23 PRK12821 aspartyl/glutamyl-tRN 51.5 22 0.00048 34.3 4.3 28 120-147 99-126 (477)
24 PF05915 DUF872: Eukaryotic pr 51.2 40 0.00086 26.4 5.1 16 53-68 39-54 (115)
25 PF09335 SNARE_assoc: SNARE as 50.8 76 0.0016 23.7 6.6 28 127-154 15-42 (123)
26 TIGR00261 traB pheromone shutd 49.1 2.2E+02 0.0049 26.8 10.6 36 54-92 240-275 (380)
27 PF09512 ThiW: Thiamine-precur 46.9 33 0.00072 28.1 4.1 17 120-136 32-48 (150)
28 COG3763 Uncharacterized protei 41.5 80 0.0017 22.6 4.8 9 167-175 53-61 (71)
29 PF01102 Glycophorin_A: Glycop 40.4 56 0.0012 25.9 4.4 26 126-157 67-92 (122)
30 COG3105 Uncharacterized protei 37.9 1.1E+02 0.0023 24.7 5.6 26 135-160 7-32 (138)
31 PF12732 YtxH: YtxH-like prote 36.7 60 0.0013 22.8 3.8 28 139-166 5-32 (74)
32 PRK14395 membrane protein; Pro 34.1 74 0.0016 27.1 4.5 40 137-176 5-45 (195)
33 PRK01844 hypothetical protein; 33.2 1.4E+02 0.0029 21.6 5.0 28 143-170 10-38 (72)
34 KOG1109 Vacuole membrane prote 33.0 15 0.00032 34.8 0.1 88 139-226 215-319 (440)
35 COG0586 DedA Uncharacterized m 33.0 2.1E+02 0.0045 24.3 7.2 68 81-160 96-167 (208)
36 PF13807 GNVR: G-rich domain o 33.0 69 0.0015 22.9 3.6 25 117-141 55-79 (82)
37 PF06695 Sm_multidrug_ex: Puta 32.6 1.4E+02 0.0031 23.2 5.6 37 138-174 18-54 (121)
38 PRK14402 membrane protein; Pro 32.5 88 0.0019 26.8 4.7 64 134-197 4-76 (198)
39 PF05552 TM_helix: Conserved T 32.3 58 0.0013 21.4 2.9 23 143-165 17-39 (53)
40 KOG2385 Uncharacterized conser 32.2 26 0.00057 34.5 1.6 59 94-158 251-310 (633)
41 PF07290 DUF1449: Protein of u 32.0 2.1E+02 0.0045 24.6 6.9 34 135-168 93-126 (202)
42 PRK10527 hypothetical protein; 31.8 1.4E+02 0.003 23.7 5.4 20 111-132 22-41 (125)
43 PRK14393 membrane protein; Pro 31.1 77 0.0017 27.0 4.1 61 137-197 6-75 (194)
44 PRK14472 F0F1 ATP synthase sub 31.1 75 0.0016 26.1 4.0 42 124-167 8-49 (175)
45 PRK14414 membrane protein; Pro 30.2 2.9E+02 0.0063 23.9 7.5 83 136-218 8-102 (210)
46 PF12072 DUF3552: Domain of un 29.6 98 0.0021 26.2 4.6 25 136-160 3-27 (201)
47 PRK00523 hypothetical protein; 29.3 1.7E+02 0.0037 21.0 5.0 29 143-171 11-40 (72)
48 PRK14400 membrane protein; Pro 29.2 1E+02 0.0022 26.5 4.5 43 134-176 6-50 (201)
49 PF10507 DUF2453: Protein of u 29.1 2.8E+02 0.006 21.6 7.0 28 139-166 37-64 (111)
50 PF10319 7TM_GPCR_Srj: Serpent 28.5 4.7E+02 0.01 24.0 9.5 90 129-227 194-292 (310)
51 PF01148 CTP_transf_1: Cytidyl 28.4 42 0.00091 28.6 2.1 25 136-160 132-156 (259)
52 PF04367 DUF502: Protein of un 28.4 2.1E+02 0.0046 21.6 5.9 28 143-170 9-36 (108)
53 PF10337 DUF2422: Protein of u 27.8 5.3E+02 0.012 24.5 14.1 34 203-236 147-180 (459)
54 PRK14404 membrane protein; Pro 27.7 70 0.0015 27.5 3.3 41 137-177 4-45 (201)
55 PF03613 EIID-AGA: PTS system 27.4 2.7E+02 0.006 24.8 7.2 47 130-178 133-180 (264)
56 PRK00220 putative glycerol-3-p 27.0 1.1E+02 0.0024 26.0 4.5 81 137-217 7-99 (198)
57 COG2205 KdpD Osmosensitive K+ 27.0 4.4E+02 0.0096 27.7 9.2 19 115-133 441-459 (890)
58 PHA02819 hypothetical protein; 27.0 47 0.001 23.8 1.7 7 29-35 22-28 (71)
59 PF03672 UPF0154: Uncharacteri 26.9 1.1E+02 0.0023 21.6 3.5 28 143-170 3-31 (64)
60 PRK14407 membrane protein; Pro 26.3 92 0.002 27.1 3.9 43 135-177 7-51 (219)
61 COG0575 CdsA CDP-diglyceride s 26.1 40 0.00086 29.8 1.6 31 136-166 136-167 (265)
62 PRK14399 membrane protein; Pro 25.9 1.2E+02 0.0025 27.2 4.5 49 128-176 4-54 (258)
63 KOG4544 Uncharacterized conser 25.7 58 0.0012 26.4 2.2 27 112-138 76-102 (144)
64 PF07960 CBP4: CBP4; InterPro 25.6 26 0.00057 28.0 0.3 27 52-78 5-31 (128)
65 PF09605 Trep_Strep: Hypotheti 25.1 87 0.0019 26.2 3.4 27 134-160 156-182 (186)
66 PF04226 Transgly_assoc: Trans 25.0 2E+02 0.0044 18.7 4.6 22 136-157 25-46 (48)
67 PRK11624 cdsA CDP-diglyceride 24.9 42 0.0009 30.2 1.5 30 138-167 156-186 (285)
68 cd02433 Nodulin-21_like_2 Nodu 24.7 2.8E+02 0.006 24.2 6.6 8 149-156 196-203 (234)
69 PRK09430 djlA Dna-J like membr 24.4 1.2E+02 0.0027 26.9 4.4 18 142-159 17-34 (267)
70 PRK14398 membrane protein; Pro 24.0 1E+02 0.0023 26.2 3.7 58 138-196 6-73 (191)
71 PF08566 Pam17: Mitochondrial 23.9 2E+02 0.0043 24.2 5.2 11 145-155 98-108 (173)
72 COG4064 MtrG Tetrahydromethano 23.3 1.5E+02 0.0031 21.3 3.7 23 126-148 50-72 (75)
73 COG2261 Predicted membrane pro 23.3 2.2E+02 0.0048 21.0 4.8 35 124-158 41-80 (82)
74 COG4239 ABC-type uncharacteriz 23.1 1.3E+02 0.0029 27.4 4.3 26 130-155 146-171 (341)
75 TIGR00023 acyl-phosphate glyce 22.7 1.4E+02 0.0031 25.4 4.3 59 137-196 7-76 (196)
76 COG4732 Predicted membrane pro 22.6 1.2E+02 0.0025 25.2 3.5 27 119-145 40-66 (177)
77 PRK14417 membrane protein; Pro 22.5 1.5E+02 0.0032 26.2 4.4 61 137-197 7-77 (232)
78 PRK11463 fxsA phage T7 F exclu 22.3 4.2E+02 0.0092 21.4 7.2 47 121-167 17-63 (148)
79 PF13488 Gly-zipper_Omp: Glyci 22.3 2.3E+02 0.005 18.3 5.0 20 139-158 24-43 (46)
80 TIGR02762 TraL_TIGR type IV co 22.2 3.4E+02 0.0073 20.2 6.0 29 120-150 22-50 (95)
81 PRK14419 membrane protein; Pro 22.1 1.6E+02 0.0035 25.0 4.6 41 136-176 5-47 (199)
82 COG1030 NfeD Membrane-bound se 21.7 5.9E+02 0.013 24.6 8.5 30 26-56 202-231 (436)
83 PRK14406 membrane protein; Pro 21.6 1.2E+02 0.0026 26.0 3.7 59 138-197 5-73 (199)
84 PF10031 DUF2273: Small integr 21.6 2.5E+02 0.0055 18.6 4.8 24 129-157 26-49 (51)
85 PF11293 DUF3094: Protein of u 21.5 1.9E+02 0.004 19.7 3.7 24 50-73 26-49 (55)
86 PF03253 UT: Urea transporter; 21.2 1.9E+02 0.004 26.3 5.0 44 111-154 171-216 (301)
87 PF13829 DUF4191: Domain of un 21.0 5.7E+02 0.012 22.4 8.6 46 121-168 40-86 (224)
88 PRK14413 membrane protein; Pro 21.0 1.5E+02 0.0031 25.4 4.0 39 138-176 6-46 (197)
89 KOG3415 Putative Rab5-interact 20.7 3.3E+02 0.0071 21.5 5.5 25 134-158 66-90 (129)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2.6e-28 Score=211.39 Aligned_cols=148 Identities=21% Similarity=0.403 Sum_probs=130.4
Q ss_pred ChhhHHHHHHhh-hccchhHHHH-HHHHHHhhhhccccCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 81 MDKEVIPIINWE-TTTFSTPVLA-VLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 81 ~~~~l~~l~~w~-~~~~~~p~~~-ill~~~~~~~~~~~iP~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g 158 (236)
...+.+.+++|+ +.+.++|+.+ ++.+. . ....++|++++++++|.+||+++|++++++|+++|++++|+++|++|
T Consensus 31 ~~~~~~~l~~~i~~~g~~~pl~~fil~~l-~--~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~g 107 (223)
T COG0398 31 LLLDPETLREWIQAYGALGPLVFFILLYL-V--ATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLG 107 (223)
T ss_pred hccCHHHHHHHHHHcCchHHHHHHHHHHH-H--HHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566678996 6788899884 44444 3 33456899999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhhchhHHHHHHHHhcCCcchhHHHhHHhcccc-cchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhc
Q 026612 159 HR-IQGWLEKYPKKAAILRAAGEGNWFHQFRTVALIRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235 (236)
Q Consensus 159 ~~-i~~~l~~~~~~~~~~~~~~~~~~~~g~~~v~l~RliP-~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~ 235 (236)
|+ .++..+++++.+++++..++ ||++.+++.|++| +|++++||+||++++++++|.++|.+|++|++++|+|.
T Consensus 108 r~~~~~~~~~~~~~~~~~~~~~~----~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~ 182 (223)
T COG0398 108 RDWVLKFVGGKEKVQRIDAGLER----NGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYL 182 (223)
T ss_pred HHHHHHHhcccHHHHHHHHHHHh----CChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHH
Confidence 98 88888888888999988886 4899999999999 79999999999999999999999999999999999884
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.87 E-value=2.8e-21 Score=150.68 Aligned_cols=115 Identities=30% Similarity=0.460 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchhHHH---HHHHHhcCCcchhHHHhHH
Q 026612 117 LPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAA---ILRAAGEGNWFHQFRTVAL 192 (236)
Q Consensus 117 iP~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~~~~~~~~---~~~~~~~~~~~~g~~~v~l 192 (236)
+|++++++++|++||++.|++++.+|+++|+.++|++||+++++ .+++..++++.++ .++..+ +||...+++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~l~~ 76 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQ----KYGFWVLFL 76 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHh----hhhHHHHHH
Confidence 69999999999999999999999999999999999999999965 7776665555555 444443 468999999
Q ss_pred hcccc-cchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhc
Q 026612 193 IRISP-FPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235 (236)
Q Consensus 193 ~RliP-~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~ 235 (236)
.|++| +|++++|+++|++++|+++|+.++++|.+|++.++++.
T Consensus 77 ~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~ 120 (123)
T PF09335_consen 77 SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLL 120 (123)
T ss_pred HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 69999999999999999999999999999999999874
No 3
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.77 E-value=5.4e-18 Score=145.53 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=112.4
Q ss_pred chhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh---
Q 026612 96 FSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-----FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE--- 166 (236)
Q Consensus 96 ~~~p~~~ill~~~~~~~~~~~iP~~~l~~~aG~l-----FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~--- 166 (236)
+....+++..+.....+...++|++++++++|++ ++++...+.+.+|+++|+.++|++||++|++ .+++.+
T Consensus 15 ~~~~~~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~ 94 (208)
T COG0586 15 LGYLGVFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRL 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhcc
Confidence 3445666666665444445679999999999998 4567889999999999999999999999988 666554
Q ss_pred -hchhHHHHHHHHhcCCcchhHHHhHHhcccccchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhc
Q 026612 167 -KYPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYT 235 (236)
Q Consensus 167 -~~~~~~~~~~~~~~~~~~~g~~~v~l~RliP~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~ 235 (236)
+.++.++.++..+ |||.++++++|++|.-+++++..||++|||+++|++.+++|.+.|..++++.
T Consensus 95 ~~~~~l~~a~~~f~----r~G~~~vf~~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~l 160 (208)
T COG0586 95 LKRKKLDKAELLFE----RHGLFAIFLGRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLL 160 (208)
T ss_pred CCHHHHHHHHHHHH----HcCchhhhhhcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555556665 4799999999999999999999999999999999999999999999998763
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.73 E-value=2.5e-17 Score=142.37 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=106.5
Q ss_pred cchhH-HHHHHHHHHhhhhccccCChHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 026612 95 TFSTP-VLAVLVFASVALFPTLLLPSSPSMWVAGMTFG-------YGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWL 165 (236)
Q Consensus 95 ~~~~p-~~~ill~~~~~~~~~~~iP~~~l~~~aG~lFG-------~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l 165 (236)
+.+++ +++++.+....+....++|++.+.+++|++.+ .+..++.+++|+++|+.++|++||++|++ +.++.
T Consensus 26 g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~ 105 (219)
T PRK10847 26 GVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPN 105 (219)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccc
Confidence 44444 35555554432233356899999999998865 45678899999999999999999999988 54332
Q ss_pred hh---chhHHHHHHHHhcCCcchhHHHhHHhcccccchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHh
Q 026612 166 EK---YPKKAAILRAAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234 (236)
Q Consensus 166 ~~---~~~~~~~~~~~~~~~~~~g~~~v~l~RliP~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy 234 (236)
++ .++.++.++.++| ||.+.+++.|++|+-+++++++||+++||+++|++.+.+|.+++..++++
T Consensus 106 ~~~~~~~~l~~~~~~~~r----~G~~~v~i~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~ 173 (219)
T PRK10847 106 SKIFRRSYLDKTHQFYEK----HGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTY 173 (219)
T ss_pred cccCCHHHHHHHHHHHHH----cCCEEEEeeCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 22 2234566666654 68899999999998779999999999999999999999999999999876
No 5
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.39 E-value=7.5e-13 Score=117.73 Aligned_cols=125 Identities=22% Similarity=0.358 Sum_probs=103.5
Q ss_pred HHhhhhccccCCh-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchhHHHHHHHHhcCCcc
Q 026612 107 ASVALFPTLLLPS-SPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAAGEGNWF 184 (236)
Q Consensus 107 ~~~~~~~~~~iP~-~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~~~~~~~~~~~~~~~~~~~ 184 (236)
+.+.....+.+|+ ..+.+.+|++||.+.|.+.+...+++|++++|++++.++|. +.++...+.+ .+....+++ ..
T Consensus 102 ~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~--~~~~~~~~~-~~ 178 (275)
T KOG3140|consen 102 AAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIA--FLQQDVELN-RN 178 (275)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHH--HHHHHHHhc-cc
Confidence 3445667788995 66899999999999999999999999999999999999998 8887765422 333333321 12
Q ss_pred hhHHHhHHhccccc-chhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHh
Q 026612 185 HQFRTVALIRISPF-PYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234 (236)
Q Consensus 185 ~g~~~v~l~RliP~-P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy 234 (236)
+-+..+++.|++|+ |+++.|+++++.++++..|++++++|++|..++++-
T Consensus 179 ~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ 229 (275)
T KOG3140|consen 179 SLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVR 229 (275)
T ss_pred chhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhh
Confidence 34778999999995 999999999999999999999999999999998864
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.35 E-value=2e-11 Score=100.89 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=101.8
Q ss_pred HHhhhccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 026612 89 INWETTTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMT-FGYGFGFLLIMSAVAVGISLPYFIGSHFLHRI-QGWLE 166 (236)
Q Consensus 89 ~~w~~~~~~~p~~~ill~~~~~~~~~~~iP~~~l~~~aG~l-FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~i-~~~l~ 166 (236)
.++..+..+...+|+..|++..++| +|++++....-.. ..++.-..++.+|+++|+.++|++||+.++.+ +++..
T Consensus 10 ~~~~~~~~a~~~Lf~vaF~eat~lP---~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~ 86 (161)
T COG1238 10 LSLMSQAYAYAGLFIVAFLEATLLP---VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFP 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhc
Confidence 3443333445567777777655554 6887754333332 67788899999999999999999999999874 43332
Q ss_pred -hchhHHHHHH-HHhcCCcchhHHHhHHhcccccchhHHHHhHhhcCCCchhHHHHHHHhHHHHHHHhHh
Q 026612 167 -KYPKKAAILR-AAGEGNWFHQFRTVALIRISPFPYIIYNYCAVATHVKYGPYFLGSLVGMVPEIFVTIY 234 (236)
Q Consensus 167 -~~~~~~~~~~-~~~~~~~~~g~~~v~l~RliP~P~~~vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy 234 (236)
+..+.++..+ ..+ |+|.+.+++.=+.|+| ++++.+||..++++++|+...++|..+.-++-+|
T Consensus 87 ~~~~~~~~~~~~~~~----ryg~~~ll~s~lp~ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~ 151 (161)
T COG1238 87 GSEEALEKLQEKWYR----RYGVWTLLLSWLPPIG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAA 151 (161)
T ss_pred chHHHHHHHHHHHHH----HHHHHHHHHHhccccc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333332 232 4689999999998899 9999999999999999999999999998887665
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=95.93 E-value=0.13 Score=40.62 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhc-hhHHHHHHHHhcCCcchhHHHhHHhcccccc---
Q 026612 130 FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR------IQGWLEKY-PKKAAILRAAGEGNWFHQFRTVALIRISPFP--- 199 (236)
Q Consensus 130 FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~------i~~~l~~~-~~~~~~~~~~~~~~~~~g~~~v~l~RliP~P--- 199 (236)
++++..++++.+|+++...+.++.-++.-+. .++..++. ++.++-.+..+ |+|+..+++.=.+|+|
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~----kyg~~GL~lFVaIPlP~TG 89 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIE----KYGFWGLALFVAIPLPGTG 89 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhCCCCcch
Confidence 3567888889999888776666655554332 22222111 01111122232 4688888888788887
Q ss_pred hhHHHHhHhhcCCCchhHHHHHHHhHHHHH
Q 026612 200 YIIYNYCAVATHVKYGPYFLGSLVGMVPEI 229 (236)
Q Consensus 200 ~~~vny~aG~t~i~~~~F~l~s~iG~lP~~ 229 (236)
-+.-+.+|-+.+|+.++=+++..+|.+-..
T Consensus 90 ~wtgal~a~llg~~~~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 90 AWTGALIASLLGMDKKKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999987554
No 8
>PRK01844 hypothetical protein; Provisional
Probab=87.24 E-value=1.8 Score=31.09 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 132 YGFGFLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 132 ~~~G~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
.|...++.+++..+|.+++|+++|+..++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677889999999999999987654
No 9
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=82.95 E-value=20 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026612 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (236)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~ 150 (236)
++...++++|++||||+|.+...+++.++....
T Consensus 33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 357788999999999999999888888877654
No 10
>PRK00523 hypothetical protein; Provisional
Probab=82.42 E-value=4.1 Score=29.32 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 134 FGFLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 134 ~G~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
..+++.+++..+|.+.+|+++|+..++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777889999999999987654
No 11
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=77.40 E-value=7.5 Score=30.70 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 122 SMWVAGMTFGYGFG--FLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 122 l~~~aG~lFG~~~G--~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
+.++.|+..|...+ -..+.+++.+|..++|++.|++.++
T Consensus 80 l~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 80 LALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555444 5778888899999999999998775
No 12
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.90 E-value=4.6 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026612 138 LIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 138 ~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
+.+++.++|.+++|+++|+..++
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k 24 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEK 24 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778889999999987654
No 13
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=74.61 E-value=5.1 Score=32.59 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026612 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (236)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~ 150 (236)
|+......+|++||+..|++...+|..++..+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 467788899999999999999999999888743
No 14
>PRK11677 hypothetical protein; Provisional
Probab=72.66 E-value=8.1 Score=31.10 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026612 136 FLLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 136 ~~~~~~G~~lGa~l~y~igR~~g 158 (236)
++++++|-++|.+++|+++|+..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 35677888899999999999854
No 15
>PRK09609 hypothetical protein; Provisional
Probab=72.15 E-value=47 Score=30.50 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026612 57 KLAFFLTSVGLLAAVF 72 (236)
Q Consensus 57 kl~~l~~~l~~~~~~~ 72 (236)
|-++.+++++++..+.
T Consensus 7 r~Iv~lALLIAIsIVL 22 (312)
T PRK09609 7 KKISFVAILIAISVVF 22 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555544
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.18 E-value=13 Score=26.60 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 026612 133 GFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPK 170 (236)
Q Consensus 133 ~~G~~~~~~G~~lGa~l~y~igR~~g~~i~~~l~~~~~ 170 (236)
|.+.+...++-.+|...+|+++|+... +.++++|.
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~~---k~lk~NPp 38 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQMK---KQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhCCC
Confidence 455566667777777788999887654 34444443
No 17
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=68.70 E-value=22 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 134 FGFLLIMSAVAVGISLPYFIGSHFLHRIQGWL 165 (236)
Q Consensus 134 ~G~~~~~~G~~lGa~l~y~igR~~g~~i~~~l 165 (236)
.|..+..+|..+. .+.+++.|++.+-..+++
T Consensus 142 ~~i~~~glGlll~-~~~~~l~k~~~~~~~~y~ 172 (181)
T PF08006_consen 142 FGIGLFGLGLLLI-VITFYLTKLFIKLTVRYL 172 (181)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444444332 245566666655433333
No 18
>PRK13661 hypothetical protein; Provisional
Probab=65.76 E-value=12 Score=31.68 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026612 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (236)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l 149 (236)
|+.....++|++||+..|++...+|..++..+
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll 70 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFI 70 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 44566677778888888888777777777664
No 19
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=62.70 E-value=32 Score=28.19 Aligned_cols=37 Identities=14% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 124 WVAGMTFGYG-FGFLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 124 ~~aG~lFG~~-~G~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
+++.++++.. ..=.+..+++.+|..++|++.|.+.|+
T Consensus 90 ~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 90 FLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455442 245678889999999999999988765
No 20
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=61.56 E-value=25 Score=28.77 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 136 ~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
-..+.+++.+|..++|++.|++.++
T Consensus 103 e~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 103 DLAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466778888888999999987764
No 21
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.06 E-value=15 Score=29.11 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026612 138 LIMSAVAVGISLPYFIGSHFLH 159 (236)
Q Consensus 138 ~~~~G~~lGa~l~y~igR~~g~ 159 (236)
++++|.++|.+++|+++|...+
T Consensus 1 y~~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHhcc
Confidence 3567888888899999988654
No 22
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=53.69 E-value=12 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026612 118 PSSPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (236)
Q Consensus 118 P~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l 149 (236)
|+.+..+++|+++|++.|.+...+...++..+
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888877777666665544
No 23
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=51.54 E-value=22 Score=34.25 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026612 120 SPSMWVAGMTFGYGFGFLLIMSAVAVGI 147 (236)
Q Consensus 120 ~~l~~~aG~lFG~~~G~~~~~~G~~lGa 147 (236)
.+...++|++|||++|.+...++..+|.
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg~ 126 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLTV 126 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4567889999999999999999998884
No 24
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=51.24 E-value=40 Score=26.37 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026612 53 WYWVKLAFFLTSVGLL 68 (236)
Q Consensus 53 ~~w~kl~~l~~~l~~~ 68 (236)
..|+.+++.+++++..
T Consensus 39 ~pwK~I~la~~Lli~G 54 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFG 54 (115)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677766555544433
No 25
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=50.76 E-value=76 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=13.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 127 GMTFGYGFGFLLIMSAVAVGISLPYFIG 154 (236)
Q Consensus 127 G~lFG~~~G~~~~~~G~~lGa~l~y~ig 154 (236)
|...|.....+-+.+|+.+.=.++...+
T Consensus 15 g~~~~~~~~~~g~~~g~~~~y~lgr~~~ 42 (123)
T PF09335_consen 15 GPWLGFLIATLGAVLGSLLAYLLGRYFG 42 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444445555555555555555
No 26
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=49.11 E-value=2.2e+02 Score=26.83 Aligned_cols=36 Identities=6% Similarity=0.100 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHhh
Q 026612 54 YWVKLAFFLTSVGLLAAVFIKWVGPFFMDKEVIPIINWE 92 (236)
Q Consensus 54 ~w~kl~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~w~ 92 (236)
+|...++.+++++++++..+ +..+ .+.-++.+..|+
T Consensus 240 k~~~~~i~~~i~~~~~~~~~-~~~~--~~~~~~~~~~W~ 275 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISF-YLNG--FEFLYKNLKLWI 275 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcCc--HHHHHHHHHHHH
Confidence 44444455555555552222 2222 123355667785
No 27
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=46.87 E-value=33 Score=28.14 Aligned_cols=17 Identities=12% Similarity=0.086 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHH
Q 026612 120 SPSMWVAGMTFGYGFGF 136 (236)
Q Consensus 120 ~~l~~~aG~lFG~~~G~ 136 (236)
..+.+++|.+.|||++.
T Consensus 32 H~iNviaaVlLGP~ya~ 48 (150)
T PF09512_consen 32 HMINVIAAVLLGPWYAV 48 (150)
T ss_pred HHHHHHHHHHhchHHHH
Confidence 44566666666666543
No 28
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.46 E-value=80 Score=22.64 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.8
Q ss_pred hchhHHHHH
Q 026612 167 KYPKKAAIL 175 (236)
Q Consensus 167 ~~~~~~~~~ 175 (236)
+.|..+++.
T Consensus 53 qKpSe~kI~ 61 (71)
T COG3763 53 QKPSEKKIN 61 (71)
T ss_pred CCchHHHHH
Confidence 344444444
No 29
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.44 E-value=56 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.444 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 126 AGMTFGYGFGFLLIMSAVAVGISLPYFIGSHF 157 (236)
Q Consensus 126 aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~ 157 (236)
+|++||...|.+..+ ..+.|++.|+-
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHHh
Confidence 555555555543322 25667776543
No 30
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.86 E-value=1.1e+02 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 135 GFLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 135 G~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
...+..+|-++|-+++|++.|..-+.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 34677788889999999999986554
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.71 E-value=60 Score=22.82 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026612 139 IMSAVAVGISLPYFIGSHFLHRIQGWLE 166 (236)
Q Consensus 139 ~~~G~~lGa~l~y~igR~~g~~i~~~l~ 166 (236)
..+|+++|+.++++++-.-|++.++.++
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~e~R~~l~ 32 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGKETREKLK 32 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4568888888898887766765554443
No 32
>PRK14395 membrane protein; Provisional
Probab=34.06 E-value=74 Score=27.14 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 026612 137 LLIMSAVAVGIS-LPYFIGSHFLHRIQGWLEKYPKKAAILR 176 (236)
Q Consensus 137 ~~~~~G~~lGa~-l~y~igR~~g~~i~~~l~~~~~~~~~~~ 176 (236)
++..+|..+||. .+|+++|..+.|+++.-.+++-....-|
T Consensus 5 ~~~i~~YLlGSIp~~~ii~k~~g~DiR~~GSgN~GaTNv~R 45 (195)
T PRK14395 5 AIFIIAYLLGAIPFAYWAGRYKGMDVRKHGSGNIGTTNAFR 45 (195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHcCCCchhcCCCCchHHHHHH
Confidence 345678888986 7899999655568887766654443334
No 33
>PRK01844 hypothetical protein; Provisional
Probab=33.21 E-value=1.4e+02 Score=21.57 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhchh
Q 026612 143 VAVGISLPYFIGSHFLHR-IQGWLEKYPK 170 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~~-i~~~l~~~~~ 170 (236)
.+++-.++..+|-++.|+ .+++++++|.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345566667777777777 7888877754
No 34
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=33.04 E-value=15 Score=34.76 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------H--HHHHHh----hc----hhHHHHHHHHhcCCcchhHHHhHHhcccc-cchh
Q 026612 139 IMSAVAVGISLPYFIGSHFLH------R--IQGWLE----KY----PKKAAILRAAGEGNWFHQFRTVALIRISP-FPYI 201 (236)
Q Consensus 139 ~~~G~~lGa~l~y~igR~~g~------~--i~~~l~----~~----~~~~~~~~~~~~~~~~~g~~~v~l~RliP-~P~~ 201 (236)
-=.|+++|....|+.+|--.- + ...+.. ++ .+.++.+-+++++.-+-||..+++.--+| --|+
T Consensus 215 wg~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfd 294 (440)
T KOG1109|consen 215 WGAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFD 294 (440)
T ss_pred hccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchh
Confidence 345889999999999986321 1 111110 00 01122223333221123678888888888 5688
Q ss_pred HHHHhHhhcCCCchhHHHHHHHhHH
Q 026612 202 IYNYCAVATHVKYGPYFLGSLVGMV 226 (236)
Q Consensus 202 ~vny~aG~t~i~~~~F~l~s~iG~l 226 (236)
+.-.-+|..-+|||.|+.+|++|-.
T Consensus 295 laGitcghflvpfw~ffGaTLigKa 319 (440)
T KOG1109|consen 295 LAGITCGHFLVPFWTFFGATLIGKA 319 (440)
T ss_pred hcccccccccchHHHHhhHHHHHHH
Confidence 8888899999999999999999954
No 35
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=33.00 E-value=2.1e+02 Score=24.32 Aligned_cols=68 Identities=12% Similarity=-0.017 Sum_probs=45.7
Q ss_pred ChhhHHHHHHhh-hccchhHHHHHHHHHHhhhhccccCCh--HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 81 MDKEVIPIINWE-TTTFSTPVLAVLVFASVALFPTLLLPS--SPSMWVAGMT-FGYGFGFLLIMSAVAVGISLPYFIGSH 156 (236)
Q Consensus 81 ~~~~l~~l~~w~-~~~~~~p~~~ill~~~~~~~~~~~iP~--~~l~~~aG~l-FG~~~G~~~~~~G~~lGa~l~y~igR~ 156 (236)
.++.+++..+|. ++|. ..+++. =++|+ ++..+.+|+. +.+..=.+++.+|+++=+.+..++|..
T Consensus 96 ~~~~l~~a~~~f~r~G~--~~vf~~----------RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~ 163 (208)
T COG0586 96 KRKKLDKAELLFERHGL--FAIFLG----------RFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYL 163 (208)
T ss_pred CHHHHHHHHHHHHHcCc--hhhhhh----------cccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777776 3333 223322 22343 5666778876 566667788999999999999999999
Q ss_pred HHHH
Q 026612 157 FLHR 160 (236)
Q Consensus 157 ~g~~ 160 (236)
+|+.
T Consensus 164 ~G~~ 167 (208)
T COG0586 164 LGEV 167 (208)
T ss_pred hccc
Confidence 8864
No 36
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=32.98 E-value=69 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHH
Q 026612 117 LPSSPSMWVAGMTFGYGFGFLLIMS 141 (236)
Q Consensus 117 iP~~~l~~~aG~lFG~~~G~~~~~~ 141 (236)
=|...+.++.|.++|...|+.++++
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899998998888776653
No 37
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=32.56 E-value=1.4e+02 Score=23.21 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 026612 138 LIMSAVAVGISLPYFIGSHFLHRIQGWLEKYPKKAAI 174 (236)
Q Consensus 138 ~~~~G~~lGa~l~y~igR~~g~~i~~~l~~~~~~~~~ 174 (236)
.+.+-+.+|+.+.-.+--.+.+++.+++++.+..+++
T Consensus 18 ~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~ 54 (121)
T PF06695_consen 18 EAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKF 54 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444455555555544444444455555444444333
No 38
>PRK14402 membrane protein; Provisional
Probab=32.53 E-value=88 Score=26.76 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcC--------CcchhHHHhHHhcccc
Q 026612 134 FGFLLIMSAVAVGIS-LPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEG--------NWFHQFRTVALIRISP 197 (236)
Q Consensus 134 ~G~~~~~~G~~lGa~-l~y~igR~~g~~i~~~l~~~~~~~~~~~~~~~~--------~~~~g~~~v~l~RliP 197 (236)
...+...+|..+||. .+|+++|..+.|+++.-.+++-....-|...+. .-..|...+.+.+..+
T Consensus 4 ~~~l~~~~~YllGsip~~~~v~k~~g~DiR~~GSgN~GatNv~R~~G~~~g~~v~l~D~lKG~l~v~l~~~~~ 76 (198)
T PRK14402 4 TAVLALLLAYLFGSIPAGAWVARTRGVDIRKVGSGNSGATNVLRSLGKGPALVVAFFDVLKGGIAVLLARALG 76 (198)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCChhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566677888886 789999975556888776655443333322210 0012666777777665
No 39
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=32.31 E-value=58 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026612 143 VAVGISLPYFIGSHFLHRIQGWL 165 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~~i~~~l 165 (236)
..+++.+-+++|.+..+.+.+.+
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~ 39 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554433333
No 40
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.23 E-value=26 Score=34.48 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHHHHhhhhccccCChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 026612 94 TTFSTPVLAVLVFASVALFPTLLLPSSPSMWVAGMTFGYGFGFLLIMSAVAVGISLP-YFIGSHFL 158 (236)
Q Consensus 94 ~~~~~p~~~ill~~~~~~~~~~~iP~~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~-y~igR~~g 158 (236)
.|..+|++...+=+ ++|.+.+-+. .+.|+.=|..-..+++..|+..|+..+ +-.+|+.|
T Consensus 251 GGLaAP~IaAG~Gt---~~~~iG~~g~---aat~~~T~aGsaav~ta~gaa~ga~~G~~kMa~R~g 310 (633)
T KOG2385|consen 251 GGLAAPAIAAGIGT---LFPTIGLGGF---AATGLGTGAGSAAVITAFGAAGGALTGMTKMAKRSG 310 (633)
T ss_pred ccchhhHHhhchhh---heeccccchh---hHhhHhhccchhHHHHhhccccchhcchhhHhhhcC
Confidence 45556665543322 4444333321 233322222233445555555555554 44555544
No 41
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=32.01 E-value=2.1e+02 Score=24.60 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026612 135 GFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEKY 168 (236)
Q Consensus 135 G~~~~~~G~~lGa~l~y~igR~~g~~i~~~l~~~ 168 (236)
+.+-.++...+.-.++.++.|+.++.+.|++.+.
T Consensus 93 ~~lp~~l~~~~al~~sl~~~~~~~~~la~ilp~~ 126 (202)
T PF07290_consen 93 GPLPAWLAAPVALFLSLFFTRYLGRPLARILPKD 126 (202)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 4444555556666678889999998888888664
No 42
>PRK10527 hypothetical protein; Provisional
Probab=31.81 E-value=1.4e+02 Score=23.70 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=15.7
Q ss_pred hhccccCChHHHHHHHHHHHhH
Q 026612 111 LFPTLLLPSSPSMWVAGMTFGY 132 (236)
Q Consensus 111 ~~~~~~iP~~~l~~~aG~lFG~ 132 (236)
++|. +|.+++.+++.++|.-
T Consensus 22 ~LPl--LPTTPFlLLAa~cfaR 41 (125)
T PRK10527 22 VLPL--LPTTPFILLAAWCFAR 41 (125)
T ss_pred hccC--CCCcHHHHHHHHHHHc
Confidence 4564 8999999999888764
No 43
>PRK14393 membrane protein; Provisional
Probab=31.13 E-value=77 Score=27.00 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcC--------CcchhHHHhHHhcccc
Q 026612 137 LLIMSAVAVGIS-LPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEG--------NWFHQFRTVALIRISP 197 (236)
Q Consensus 137 ~~~~~G~~lGa~-l~y~igR~~g~~i~~~l~~~~~~~~~~~~~~~~--------~~~~g~~~v~l~RliP 197 (236)
++..+|..+||. .+|+++|..|.|+++.-.+++-....-|...+. .-..|+..+.+.+...
T Consensus 6 ~~~i~~YLlGSip~~~ii~k~~g~DiR~~GSgN~GaTNv~R~~G~k~g~~vll~D~lKG~lav~la~~~~ 75 (194)
T PRK14393 6 LLLVGAYLLGSIPTGLLLAKAVGVDIRNTGSGNIGATNVYRTLGRKVGILTLIGDCLKGLVPVLIARKLG 75 (194)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCchhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345667888886 789999987666887766655443333332210 0012566666666553
No 44
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.09 E-value=75 Score=26.13 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026612 124 WVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEK 167 (236)
Q Consensus 124 ~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~i~~~l~~ 167 (236)
++.|.+|++.+|.++..+-+++ ++.+++.+++.+++.+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~Fl--il~~lL~~~l~kpi~~~l~~ 49 (175)
T PRK14472 8 LLSGGLLSPNPGLIFWTAVTFV--IVLLILKKIAWGPILSALEE 49 (175)
T ss_pred hhcCCccCCCHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHH
Confidence 3444467776555432222221 33344455555557666654
No 45
>PRK14414 membrane protein; Provisional
Probab=30.19 E-value=2.9e+02 Score=23.95 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhchhHHHHHHHHhcC--------CcchhHHHhHHhcccccchh--HH
Q 026612 136 FLLIMSAVAVGIS-LPYFIGSHFL-HRIQGWLEKYPKKAAILRAAGEG--------NWFHQFRTVALIRISPFPYI--IY 203 (236)
Q Consensus 136 ~~~~~~G~~lGa~-l~y~igR~~g-~~i~~~l~~~~~~~~~~~~~~~~--------~~~~g~~~v~l~RliP~P~~--~v 203 (236)
.+...+|..+||. .+|+++|.+. .|+++.-.+++-....-|...+. .-..|+..+.+.+..+.+.. ..
T Consensus 8 il~~i~~YLlGSIp~g~ii~k~~~g~DiR~~GSGN~GaTNv~R~~G~~~gilvll~D~lKG~l~v~la~~~~~~~~~~~~ 87 (210)
T PRK14414 8 IIALIAAYFIGSTPAPYLAGRIFKGIDIRTVGSKNMGSMNVFYNVGFWPGILVLAVDIGKGALAMAVANWLGEGLGIQML 87 (210)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3445667888886 7799999864 45777665554433322322110 00136777777777664222 23
Q ss_pred HHhHhhcCCCchhHH
Q 026612 204 NYCAVATHVKYGPYF 218 (236)
Q Consensus 204 ny~aG~t~i~~~~F~ 218 (236)
.-++.+.+=.|..|+
T Consensus 88 ~glaavlGH~fpifl 102 (210)
T PRK14414 88 CALMAIAGHNYPVWL 102 (210)
T ss_pred HHHHHHHccCChHHh
Confidence 345555565566665
No 46
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=29.63 E-value=98 Score=26.21 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 136 ~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
++++++|.++|..++|++.+...+.
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~ 27 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRK 27 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888887776654
No 47
>PRK00523 hypothetical protein; Provisional
Probab=29.29 E-value=1.7e+02 Score=21.05 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhchhH
Q 026612 143 VAVGISLPYFIGSHFLHR-IQGWLEKYPKK 171 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~~-i~~~l~~~~~~ 171 (236)
.+++-.++...|-++.|+ .++.++++|..
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~~NPpi 40 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIRENPPI 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 344455666666666677 77777766543
No 48
>PRK14400 membrane protein; Provisional
Probab=29.21 E-value=1e+02 Score=26.49 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhchhHHHHHH
Q 026612 134 FGFLLIMSAVAVGIS-LPYFIGSHFLH-RIQGWLEKYPKKAAILR 176 (236)
Q Consensus 134 ~G~~~~~~G~~lGa~-l~y~igR~~g~-~i~~~l~~~~~~~~~~~ 176 (236)
.+.++..+|..+||. .+|+++|.+.+ |+++.-.+++-....-|
T Consensus 6 ~~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~GaTNv~R 50 (201)
T PRK14400 6 LGAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIGATNVAR 50 (201)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHH
Confidence 355666778888886 78999998644 57777666554433333
No 49
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=29.15 E-value=2.8e+02 Score=21.63 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026612 139 IMSAVAVGISLPYFIGSHFLHRIQGWLE 166 (236)
Q Consensus 139 ~~~G~~lGa~l~y~igR~~g~~i~~~l~ 166 (236)
++.++.+|.+++=..|-.++..+++..+
T Consensus 37 tmAAAalGN~vSDv~Gi~~~~~vE~~~~ 64 (111)
T PF10507_consen 37 TMAAAALGNLVSDVAGIGLGGYVERLAQ 64 (111)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 3445566666666666655554444443
No 50
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=28.51 E-value=4.7e+02 Score=24.05 Aligned_cols=90 Identities=14% Similarity=0.347 Sum_probs=49.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhcCCcchhHHHhHHhccccc-----chhH
Q 026612 129 TFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWL-EKYPKKAAILRAAGEGNWFHQFRTVALIRISPF-----PYII 202 (236)
Q Consensus 129 lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~i~~~l-~~~~~~~~~~~~~~~~~~~~g~~~v~l~RliP~-----P~~~ 202 (236)
.+-.|.|..+..+=++.+..+-+.+|+..-+++++.- .-+++.+++++. -++++.+==.+|+ |-.
T Consensus 194 v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~q--------L~~AL~vQT~IPi~vsf~Pc~- 264 (310)
T PF10319_consen 194 VFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQ--------LFKALIVQTVIPICVSFSPCV- 264 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHHHHH--------HHHHHHHHHHhHHHHhhccHH-
Confidence 4667888888888777777777888887766643221 112223333322 2455554445551 222
Q ss_pred HHHhHhhcCC---CchhHHHHHHHhHHH
Q 026612 203 YNYCAVATHV---KYGPYFLGSLVGMVP 227 (236)
Q Consensus 203 vny~aG~t~i---~~~~F~l~s~iG~lP 227 (236)
++.-.-+.++ ++-.+.-..+++..|
T Consensus 265 ~~wy~pif~i~~~~~~n~~~~iAls~FP 292 (310)
T PF10319_consen 265 LSWYGPIFGIDLGRWNNYFSVIALSAFP 292 (310)
T ss_pred HHHhHHHHcCChhHHHHHHHHHHHHHcc
Confidence 3333334444 445566666666665
No 51
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=28.39 E-value=42 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 136 FLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 136 ~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
.+..++....|...+|++||++||.
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456667778999999999999986
No 52
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=28.38 E-value=2.1e+02 Score=21.62 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 026612 143 VAVGISLPYFIGSHFLHRIQGWLEKYPK 170 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~~i~~~l~~~~~ 170 (236)
..+|-...-++||++.+.+++.+.|-|-
T Consensus 9 ~~iG~l~~~~~g~~l~~~~e~ll~riP~ 36 (108)
T PF04367_consen 9 FLIGLLARNYFGKWLLNWLERLLQRIPL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 4456666667777777767777777666
No 53
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=27.77 E-value=5.3e+02 Score=24.46 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHhHhhcCCCchhHHHHHHHhHHHHHHHhHhcC
Q 026612 203 YNYCAVATHVKYGPYFLGSLVGMVPEIFVTIYTP 236 (236)
Q Consensus 203 vny~aG~t~i~~~~F~l~s~iG~lP~~~~~vy~~ 236 (236)
.-|+.|..|-+..+|.++.+.|.+-..+...|.|
T Consensus 147 ~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~g~ 180 (459)
T PF10337_consen 147 FIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTYGP 180 (459)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHhCc
Confidence 4566777777777777777777766666665554
No 54
>PRK14404 membrane protein; Provisional
Probab=27.71 E-value=70 Score=27.53 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 026612 137 LLIMSAVAVGIS-LPYFIGSHFLHRIQGWLEKYPKKAAILRA 177 (236)
Q Consensus 137 ~~~~~G~~lGa~-l~y~igR~~g~~i~~~l~~~~~~~~~~~~ 177 (236)
++..+|..+||. .+|+++|..+.|+++.-.+++-....-|.
T Consensus 4 l~~i~~YL~GSip~g~~i~k~~g~DiR~~GSgN~GatNv~R~ 45 (201)
T PRK14404 4 LIILLQFLSGSLMFSYWIGKIVGKDLRKVRDGNPGAFNLWRA 45 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHhCCCccccCCCCccHHHHHHH
Confidence 455678888885 78999998766677776656544433333
No 55
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=27.39 E-value=2.7e+02 Score=24.81 Aligned_cols=47 Identities=19% Similarity=0.091 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchhHHHHHHHH
Q 026612 130 FGYGFGFLLIMSAVAVGISLPYFIGSHFLHR-IQGWLEKYPKKAAILRAA 178 (236)
Q Consensus 130 FG~~~G~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~~~~~~~~~~~~~ 178 (236)
+|+..-+++..+-...-....|..|.+.|.+ +.+. ++ ...+++.+..
T Consensus 133 lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~~-~~~~~i~~~a 180 (264)
T PF03613_consen 133 LGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-QS-GLLQKITEAA 180 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHH
Confidence 4444433333333344456777888888888 6666 33 2455555444
No 56
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=27.05 E-value=1.1e+02 Score=26.02 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhchhHHHHHHHHhcCC--------cchhHHHhHHhccccc-ch-hHHH
Q 026612 137 LLIMSAVAVGIS-LPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGN--------WFHQFRTVALIRISPF-PY-IIYN 204 (236)
Q Consensus 137 ~~~~~G~~lGa~-l~y~igR~~g~-~i~~~l~~~~~~~~~~~~~~~~~--------~~~g~~~v~l~RliP~-P~-~~vn 204 (236)
++..+|..+||. .+|+++|.+++ |+++.-.+++-....-|...+.- -..|...+.+.+..+. +. ....
T Consensus 7 l~~i~~YLlGsip~~~ii~k~~~~~DiR~~GSgN~GatNv~R~~G~~~gilvll~D~lKG~l~v~la~~~~~~~~~~~~~ 86 (198)
T PRK00220 7 LLILLAYLLGSIPFALLVGKLFGLPDPREHGSGNPGATNVLRIGGKKAAIATLLGDALKGTLAVLLAYLFGLDPISLGLI 86 (198)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCCccHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence 345668888886 78999998754 58887666554433333322100 0125666667666542 22 1233
Q ss_pred HhHhhcCCCchhH
Q 026612 205 YCAVATHVKYGPY 217 (236)
Q Consensus 205 y~aG~t~i~~~~F 217 (236)
-.+.+.+=.|..|
T Consensus 87 ~laavlGH~~pi~ 99 (198)
T PRK00220 87 ALAAVLGHIFPVF 99 (198)
T ss_pred HHHHHHccCchHh
Confidence 3444444444444
No 57
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=27.02 E-value=4.4e+02 Score=27.70 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=14.5
Q ss_pred ccCChHHHHHHHHHHHhHH
Q 026612 115 LLLPSSPSMWVAGMTFGYG 133 (236)
Q Consensus 115 ~~iP~~~l~~~aG~lFG~~ 133 (236)
-.+|+..-++++.+.|.++
T Consensus 441 g~~pa~~aailsvl~fNyF 459 (890)
T COG2205 441 GRWPAVLAALLSVLVFNYF 459 (890)
T ss_pred chHHHHHHHHHHHHHHhhe
Confidence 3578888888888888753
No 58
>PHA02819 hypothetical protein; Provisional
Probab=26.96 E-value=47 Score=23.81 Aligned_cols=7 Identities=0% Similarity=0.567 Sum_probs=3.1
Q ss_pred Cceeecc
Q 026612 29 DYLKLRE 35 (236)
Q Consensus 29 ~~~~~~~ 35 (236)
|+.+.+.
T Consensus 22 nFI~VVk 28 (71)
T PHA02819 22 NFINVVK 28 (71)
T ss_pred HHHHHHH
Confidence 4544433
No 59
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.92 E-value=1.1e+02 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhchh
Q 026612 143 VAVGISLPYFIGSHFLHR-IQGWLEKYPK 170 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~~-i~~~l~~~~~ 170 (236)
..++-.++..+|-++.++ .++.++++|-
T Consensus 3 iilali~G~~~Gff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 445556666666667676 7777776653
No 60
>PRK14407 membrane protein; Provisional
Probab=26.28 E-value=92 Score=27.08 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhchhHHHHHHH
Q 026612 135 GFLLIMSAVAVGIS-LPYFIGSHFL-HRIQGWLEKYPKKAAILRA 177 (236)
Q Consensus 135 G~~~~~~G~~lGa~-l~y~igR~~g-~~i~~~l~~~~~~~~~~~~ 177 (236)
|.+...+|..+||. .+|+++|.+. .|+++.-.+++-....-|.
T Consensus 7 ~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~GSGN~GaTNv~R~ 51 (219)
T PRK14407 7 GAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKSTGATNVLRT 51 (219)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhCCCCCCcCCCCCccHHHHHHH
Confidence 55666678899996 7899999864 4577776655443333333
No 61
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=26.09 E-value=40 Score=29.81 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 026612 136 FLLIMSAVAVGISLPYFIGSHFLHR-IQGWLE 166 (236)
Q Consensus 136 ~~~~~~G~~lGa~l~y~igR~~g~~-i~~~l~ 166 (236)
.++..++...+.+.+|+.||.+|++ ......
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iS 167 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLAPKIS 167 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCC
Confidence 4456667888999999999999986 444443
No 62
>PRK14399 membrane protein; Provisional
Probab=25.94 E-value=1.2e+02 Score=27.23 Aligned_cols=49 Identities=14% Similarity=-0.027 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhchhHHHHHH
Q 026612 128 MTFGYGFGFLLIMSAVAVGIS-LPYFIGSHFL-HRIQGWLEKYPKKAAILR 176 (236)
Q Consensus 128 ~lFG~~~G~~~~~~G~~lGa~-l~y~igR~~g-~~i~~~l~~~~~~~~~~~ 176 (236)
+.++...-.+...+|..+||. .+|+++|.+. .|+++.-.+++-....-|
T Consensus 4 ~~~~~l~~il~~iigYLiGSIp~g~ii~k~~~g~DIR~~GSGN~GaTNv~R 54 (258)
T PRK14399 4 FYMYYLGIILASVFGYFLGSISWSIIIVKKVGNIDIRTVGSGNPGATNTVR 54 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCCCccccCCCCCcHhHHHH
Confidence 333443445566668888886 6689999864 457776665544333333
No 63
>KOG4544 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.67 E-value=58 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=20.4
Q ss_pred hccccCChHHHHHHHHHHHhHHHHHHH
Q 026612 112 FPTLLLPSSPSMWVAGMTFGYGFGFLL 138 (236)
Q Consensus 112 ~~~~~iP~~~l~~~aG~lFG~~~G~~~ 138 (236)
.+..++|..++....|+-+.+..|--.
T Consensus 76 r~~~liPIvPL~f~~gYqyd~ayGd~l 102 (144)
T KOG4544|consen 76 RLLHLIPIVPLAFFIGYQYDFAYGDQL 102 (144)
T ss_pred ccchheechhhHhhhhheeecccchHH
Confidence 355678999999999998887665443
No 64
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=25.57 E-value=26 Score=28.01 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026612 52 VWYWVKLAFFLTSVGLLAAVFIKWVGP 78 (236)
Q Consensus 52 ~~~w~kl~~l~~~l~~~~~~~~~~~~~ 78 (236)
+++|.|+++...++++.+.+++.|..|
T Consensus 5 w~~W~K~~~~G~~ii~~G~~l~~y~tP 31 (128)
T PF07960_consen 5 WRRWAKMLVAGAVIIGGGPALVKYTTP 31 (128)
T ss_pred HHHHHHHHHhcceeEeechHHheecCC
Confidence 568999999999999888888888776
No 65
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=25.14 E-value=87 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 134 FGFLLIMSAVAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 134 ~G~~~~~~G~~lGa~l~y~igR~~g~~ 160 (236)
+-.+...+.+.+++.++-++||++.++
T Consensus 156 ~~~~~~~~~~~v~a~lG~~lG~kllkK 182 (186)
T PF09605_consen 156 WMLIIIIIITFVGALLGALLGKKLLKK 182 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888888888888877764
No 66
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=25.03 E-value=2e+02 Score=18.66 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026612 136 FLLIMSAVAVGISLPYFIGSHF 157 (236)
Q Consensus 136 ~~~~~~G~~lGa~l~y~igR~~ 157 (236)
....++.+++||++.-++-|.+
T Consensus 25 ~~~~~i~aviGAiill~i~~~i 46 (48)
T PF04226_consen 25 SWGSFIVAVIGAIILLFIYRLI 46 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777666655543
No 67
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=24.94 E-value=42 Score=30.23 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 026612 138 LIMSAVAVGISLPYFIGSHFLHR-IQGWLEK 167 (236)
Q Consensus 138 ~~~~G~~lGa~l~y~igR~~g~~-i~~~l~~ 167 (236)
...+-+-.+.+.+|+.||.+||+ +.+.++.
T Consensus 156 ~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISP 186 (285)
T PRK11624 156 YVMILVWGADSGAYMFGKLFGKHKLAPKVSP 186 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCC
Confidence 34444567789999999999986 5555443
No 68
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=24.72 E-value=2.8e+02 Score=24.23 Aligned_cols=8 Identities=13% Similarity=-0.122 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 026612 149 LPYFIGSH 156 (236)
Q Consensus 149 l~y~igR~ 156 (236)
++++.+|.
T Consensus 196 lG~~~a~~ 203 (234)
T cd02433 196 TGAVTGLL 203 (234)
T ss_pred HHHHHHhh
Confidence 34444444
No 69
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=24.42 E-value=1.2e+02 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026612 142 AVAVGISLPYFIGSHFLH 159 (236)
Q Consensus 142 G~~lGa~l~y~igR~~g~ 159 (236)
|...|+++++++|..+.+
T Consensus 17 ~g~~Ga~~G~~~Gh~~d~ 34 (267)
T PRK09430 17 GGFFGALLGLLIGHMFDK 34 (267)
T ss_pred hhHHHHHHHHHHHhHHhh
Confidence 445555555555555443
No 70
>PRK14398 membrane protein; Provisional
Probab=23.97 E-value=1e+02 Score=26.19 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCCc---------chhHHHhHHhccc
Q 026612 138 LIMSAVAVGIS-LPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNW---------FHQFRTVALIRIS 196 (236)
Q Consensus 138 ~~~~G~~lGa~-l~y~igR~~g~~i~~~l~~~~~~~~~~~~~~~~~~---------~~g~~~v~l~Rli 196 (236)
...+|..+||. .+|+++|..+.|+++.-.+++-....-|...+. + ..|...+.+.|..
T Consensus 6 ~~~~~YllGsip~~~li~k~~g~DiR~~GSgN~GatNv~R~~G~~-~g~~v~l~D~lKG~~~v~l~~~~ 73 (191)
T PRK14398 6 VLILSYILGSIPFSLIITKIKGINLREVGSGNIGATNVARTGNKF-LAALALFLDSLKGFIAVYIAQQF 73 (191)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCCccccCCCCccHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888886 789999975556877766655443333333210 0 1256666666654
No 71
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.87 E-value=2e+02 Score=24.24 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 026612 145 VGISLPYFIGS 155 (236)
Q Consensus 145 lGa~l~y~igR 155 (236)
+|+.+-.+.-|
T Consensus 98 ~G~~vf~l~~r 108 (173)
T PF08566_consen 98 LGNQVFRLLNR 108 (173)
T ss_pred HHHHHHHHHhH
Confidence 34444444444
No 72
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=23.35 E-value=1.5e+02 Score=21.33 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=15.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 026612 126 AGMTFGYGFGFLLIMSAVAVGIS 148 (236)
Q Consensus 126 aG~lFG~~~G~~~~~~G~~lGa~ 148 (236)
.|+++|...|++++++=..+++.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778887777777766666553
No 73
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.35 E-value=2.2e+02 Score=20.99 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 124 WVAGMTFGYG-----FGFLLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 124 ~~aG~lFG~~-----~G~~~~~~G~~lGa~l~y~igR~~g 158 (236)
+.++.+++.+ .+...+.+.+++||++.-++.|.+.
T Consensus 41 ~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 41 FVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666665 3556778888899988887777643
No 74
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=23.12 E-value=1.3e+02 Score=27.45 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 130 FGYGFGFLLIMSAVAVGISLPYFIGS 155 (236)
Q Consensus 130 FG~~~G~~~~~~G~~lGa~l~y~igR 155 (236)
||....++-+.+|.++|+..+|+=|+
T Consensus 146 fgL~lT~~SaliGv~~GA~qGyfgg~ 171 (341)
T COG4239 146 FGLSLTLISALIGVLAGALQGYFGGW 171 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 44444444455555555555554443
No 75
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=22.66 E-value=1.4e+02 Score=25.37 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhchhHHHHHHHHhcCCc---------chhHHHhHHhccc
Q 026612 137 LLIMSAVAVGIS-LPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGNW---------FHQFRTVALIRIS 196 (236)
Q Consensus 137 ~~~~~G~~lGa~-l~y~igR~~g~-~i~~~l~~~~~~~~~~~~~~~~~~---------~~g~~~v~l~Rli 196 (236)
++..+|..+||. .+|+++|.+.+ |+++.-.+++-....-|...+. + ..|...+.+.|..
T Consensus 7 l~~~~~YLlGSip~~~~i~k~~~g~DiR~~GSgN~GatNv~R~~G~k-~gi~vll~D~lKG~lav~l~~~~ 76 (196)
T TIGR00023 7 FLLLIGYLIGSIPFAYLVGKILKGIDIREHGSGNPGATNVLRTLGVK-AALLVLIFDILKGMLAVALSFLL 76 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCchhcCCCCccHHHHHHHHChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788885 78999998754 5887766554433333332210 0 1256666666655
No 76
>COG4732 Predicted membrane protein [Function unknown]
Probab=22.55 E-value=1.2e+02 Score=25.23 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026612 119 SSPSMWVAGMTFGYGFGFLLIMSAVAV 145 (236)
Q Consensus 119 ~~~l~~~aG~lFG~~~G~~~~~~G~~l 145 (236)
...+..++|...|||++...+.+-+.+
T Consensus 40 qh~VNvlAgV~~GPwyala~A~~~sli 66 (177)
T COG4732 40 QHFVNVLAGVMMGPWYALAMALVTSLI 66 (177)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHH
No 77
>PRK14417 membrane protein; Provisional
Probab=22.45 E-value=1.5e+02 Score=26.18 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhchhHHHHHHHHhcCC--------cchhHHHhHHhcccc
Q 026612 137 LLIMSAVAVGIS-LPYFIGSHFLH-RIQGWLEKYPKKAAILRAAGEGN--------WFHQFRTVALIRISP 197 (236)
Q Consensus 137 ~~~~~G~~lGa~-l~y~igR~~g~-~i~~~l~~~~~~~~~~~~~~~~~--------~~~g~~~v~l~RliP 197 (236)
+...+|..+||. .+|+++|.+.+ |+++.-.+++-....-|...+.- --.|+..+.+.+..+
T Consensus 7 l~~i~aYLlGSIp~g~li~k~~~g~DIR~~GSGN~GaTNv~R~~Gkk~gilvll~D~lKG~laV~la~~l~ 77 (232)
T PRK14417 7 IMIPAGYLVGAIPMAYLLSRWRRGIDIRRYGSGNVGASNVIKTAGKRLGLAVFVFDVSKGALMILLAGWLG 77 (232)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445567778885 78999998754 58777665544333333222100 012666677766654
No 78
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=22.29 E-value=4.2e+02 Score=21.40 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026612 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFLHRIQGWLEK 167 (236)
Q Consensus 121 ~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g~~i~~~l~~ 167 (236)
.+.+..|-..|.++.+++..+.+++|..+.-.-|+...+++++.+++
T Consensus 17 ~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~ 63 (148)
T PRK11463 17 AVFIAVASVIGVGWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLAR 63 (148)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 79
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=22.27 E-value=2.3e+02 Score=18.33 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026612 139 IMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 139 ~~~G~~lGa~l~y~igR~~g 158 (236)
+.+|+.+|+.+.+.++++..
T Consensus 24 a~iGa~vGa~~G~~ig~~~d 43 (46)
T PF13488_consen 24 AAIGAAVGAAVGAAIGNYMD 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666543
No 80
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.22 E-value=3.4e+02 Score=20.19 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026612 120 SPSMWVAGMTFGYGFGFLLIMSAVAVGISLP 150 (236)
Q Consensus 120 ~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~ 150 (236)
+.+..+.++..|.+.|.. ++|..+|..++
T Consensus 22 E~i~~~~~~~~Gi~~~~~--l~g~~lg~~~~ 50 (95)
T TIGR02762 22 EFLPGATLFGIGILSGKA--LIGLILGAAVM 50 (95)
T ss_pred HHHHHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 444445555555555533 35566666555
No 81
>PRK14419 membrane protein; Provisional
Probab=22.10 E-value=1.6e+02 Score=25.05 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhchhHHHHHH
Q 026612 136 FLLIMSAVAVGIS-LPYFIGSHFLH-RIQGWLEKYPKKAAILR 176 (236)
Q Consensus 136 ~~~~~~G~~lGa~-l~y~igR~~g~-~i~~~l~~~~~~~~~~~ 176 (236)
+++..+|..+||. .+|+++|.+.+ |+++.-.+++-....-|
T Consensus 5 ~l~~l~~YllGsip~~~~i~k~~~~~DiR~~GSgN~GatN~~R 47 (199)
T PRK14419 5 LLIILLAYLLGSFPSGYLAGRWLKGIDLREIGSGSTGATNVLR 47 (199)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCChhhcCCCCccHHHHHH
Confidence 3455667888885 78999998754 58887766654443333
No 82
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=5.9e+02 Score=24.60 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=14.4
Q ss_pred CCCCceeeccccCCCCCCCCccccccHHHHH
Q 026612 26 NKGDYLKLREYEEGEPGSPRRWSCGKVWYWV 56 (236)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 56 (236)
.++-++.|...+...+ +.+++-.-++..|.
T Consensus 202 ~~~~~~~L~~~~~~~~-~~~ps~~~~ll~~I 231 (436)
T COG1030 202 VAGKLVTLQTTNAPVE-TLEPSWRERLLNWI 231 (436)
T ss_pred cccceEEEEecCceeE-ecCccHHHHHHHHh
Confidence 5566777755444321 22333233455666
No 83
>PRK14406 membrane protein; Provisional
Probab=21.64 E-value=1.2e+02 Score=25.96 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCCc---------chhHHHhHHhcccc
Q 026612 138 LIMSAVAVGIS-LPYFIGSHFLHRIQGWLEKYPKKAAILRAAGEGNW---------FHQFRTVALIRISP 197 (236)
Q Consensus 138 ~~~~G~~lGa~-l~y~igR~~g~~i~~~l~~~~~~~~~~~~~~~~~~---------~~g~~~v~l~RliP 197 (236)
...+|..+||. .+|+++|..+.|+++.-.+++-....-|...+. + ..|+..+.+.|...
T Consensus 5 ~~i~~YLlGSIp~~~ii~k~~g~DiR~~GSGN~GaTNv~R~~G~k-~gi~vll~D~lKG~lav~la~~~~ 73 (199)
T PRK14406 5 AIIIGYFIGAIPFSFIIPKLKGIDIRKVGSGNVGGTNVLRNAGAG-YGALAFFLDIMKAYVAVLIVKNFG 73 (199)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCCccccCCCCCcHHHHHHHHChH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44567888886 789999975556877776665443333332210 0 12566666666553
No 84
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.59 E-value=2.5e+02 Score=18.57 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 129 TFGYGFGFLLIMSAVAVGISLPYFIGSHF 157 (236)
Q Consensus 129 lFG~~~G~~~~~~G~~lGa~l~y~igR~~ 157 (236)
.||+|...++..+ +.++|.+|+++
T Consensus 26 ~~GF~~tl~i~~~-----~~iG~~iG~~~ 49 (51)
T PF10031_consen 26 TFGFWKTLFILLF-----AAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 4677655444333 23456666654
No 85
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.54 E-value=1.9e+02 Score=19.72 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 026612 50 GKVWYWVKLAFFLTSVGLLAAVFI 73 (236)
Q Consensus 50 ~~~~~w~kl~~l~~~l~~~~~~~~ 73 (236)
+.++.|+-++++++++.+++++..
T Consensus 26 ~PFrP~~Ll~~li~Vv~gl~llS~ 49 (55)
T PF11293_consen 26 KPFRPWRLLIVLIVVVIGLGLLSR 49 (55)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH
Confidence 567889988888888777766543
No 86
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=21.17 E-value=1.9e+02 Score=26.33 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=29.0
Q ss_pred hhccccCChH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 111 LFPTLLLPSS--PSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIG 154 (236)
Q Consensus 111 ~~~~~~iP~~--~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~ig 154 (236)
+-++++.|+. -+.+..|.+.......+++.+|+.+|..++..+|
T Consensus 171 ~gQV~f~~~~~~G~lil~gi~i~S~~~a~~al~Gs~lg~~~~~~lg 216 (301)
T PF03253_consen 171 FGQVFFQDNVVSGLLILIGILIASRIAALYALLGSLLGTLVALLLG 216 (301)
T ss_dssp HHHCCT---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666653 3677888888888888888888888877775544
No 87
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.02 E-value=5.7e+02 Score=22.39 Aligned_cols=46 Identities=11% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 026612 121 PSMWVAGMTFGYGFGFLLIMSAVAVGISLP-YFIGSHFLHRIQGWLEKY 168 (236)
Q Consensus 121 ~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~-y~igR~~g~~i~~~l~~~ 168 (236)
.+.++.|+++|.|+ ....+|..+|..++ +.++|+.-+..-+.++..
T Consensus 40 ~v~v~ig~l~~~~~--~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGq 86 (224)
T PF13829_consen 40 AVFVLIGLLFGSWW--YWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQ 86 (224)
T ss_pred HHHHHHHHHHccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44567778887543 33445566666554 456777665544444433
No 88
>PRK14413 membrane protein; Provisional
Probab=21.01 E-value=1.5e+02 Score=25.37 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=26.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhchhHHHHHH
Q 026612 138 LIMSAVAVGIS-LPYFIGSHFLH-RIQGWLEKYPKKAAILR 176 (236)
Q Consensus 138 ~~~~G~~lGa~-l~y~igR~~g~-~i~~~l~~~~~~~~~~~ 176 (236)
...+|..+||. .+|+++|.+.+ |+++.-.+++-....-|
T Consensus 6 ~~l~~Yl~Gsip~~~ii~k~~~g~DiR~~GSgN~GaTNv~R 46 (197)
T PRK14413 6 TSVISFLLGSIPTGYFITKKLCGIDIRTKGSGNIGSTNVKR 46 (197)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHH
Confidence 45567888886 78999998644 58777766654443333
No 89
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=3.3e+02 Score=21.50 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 134 FGFLLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 134 ~G~~~~~~G~~lGa~l~y~igR~~g 158 (236)
.|++...+-..++|-+.|...-.+-
T Consensus 66 ~G~l~iv~f~~issgIvy~y~~~~~ 90 (129)
T KOG3415|consen 66 VGFLGIVLFLGISSGIVYLYYANFL 90 (129)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444445556666665444433
Done!