Query 026612
Match_columns 236
No_of_seqs 221 out of 1679
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ezc_A UREA transporter 1; mem 34.8 1.1E+02 0.0037 27.6 7.5 68 84-158 36-106 (384)
2 3p5n_A RIBU, riboflavin uptake 26.1 40 0.0014 27.0 2.7 30 120-149 48-77 (189)
3 3k3f_A UREA transporter; membr 23.3 2.5E+02 0.0085 24.7 7.6 42 113-158 27-70 (340)
4 2hfr_A Fowlicidin-3, cathelici 17.2 61 0.0021 17.7 1.4 17 194-210 2-19 (27)
5 1ots_A Voltage-gated CLC-type 15.8 6.1E+02 0.021 22.8 10.0 18 143-160 425-442 (465)
6 4ezc_A UREA transporter 1; mem 15.1 1.9E+02 0.0066 26.0 5.0 32 122-153 238-269 (384)
7 4dve_A Biotin transporter BIOY 12.9 5.4E+02 0.018 20.7 7.1 18 120-137 52-69 (198)
8 3k3f_A UREA transporter; membr 11.5 2E+02 0.007 25.3 4.0 43 112-154 189-233 (340)
9 1q90_G Cytochrome B6F complex 11.4 2E+02 0.0067 17.1 2.6 16 216-231 4-19 (37)
10 3hn9_A Lamin-B1; structural ge 10.6 84 0.0029 23.5 1.0 32 17-51 15-46 (123)
No 1
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=34.79 E-value=1.1e+02 Score=27.63 Aligned_cols=68 Identities=9% Similarity=0.110 Sum_probs=36.0
Q ss_pred hHHHHHHhhhccchh-HHHHHHHHHHhhhhccccCCh--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 84 EVIPIINWETTTFST-PVLAVLVFASVALFPTLLLPS--SPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 84 ~l~~l~~w~~~~~~~-p~~~ill~~~~~~~~~~~iP~--~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g 158 (236)
+..++.+|.++.... ..+-.++- .+-++++.+. +-+.++.|+.++-++-.+.+.+|+.+|. +.++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~Lr---G~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vst----ltA~llg 106 (384)
T 4ezc_A 36 DMKEFANWLKDKPQALQFVDWVLR---GISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVST----LTALLLS 106 (384)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHHHH---HHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHTT
T ss_pred chHHHHHHHhcCCcHHHHHHHHhc---CceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHhC
Confidence 455678887543321 11111222 2334455554 4477788888877665555555555554 4555544
No 2
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=26.12 E-value=40 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026612 120 SPSMWVAGMTFGYGFGFLLIMSAVAVGISL 149 (236)
Q Consensus 120 ~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l 149 (236)
.....++|++||+..|++...++..++..+
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555555554443
No 3
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=23.28 E-value=2.5e+02 Score=24.75 Aligned_cols=42 Identities=7% Similarity=0.057 Sum_probs=24.4
Q ss_pred ccccCCh--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 113 PTLLLPS--SPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 113 ~~~~iP~--~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~igR~~g 158 (236)
++++.+. +-+.++.|...+.++-.+.+.+|+.+|. ..++.++
T Consensus 27 QV~f~~n~lsGllil~gi~~~s~~~a~~allG~~~st----ltA~llg 70 (340)
T 3k3f_A 27 QVMFQNNTVTGLLFFAGIFYNSTTLGVCAVLGTAAST----LTAQLLG 70 (340)
T ss_dssp GGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred eeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 3444544 4477788888886655555555555544 4455444
No 4
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=17.16 E-value=61 Score=17.66 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=12.9
Q ss_pred cccc-cchhHHHHhHhhc
Q 026612 194 RISP-FPYIIYNYCAVAT 210 (236)
Q Consensus 194 RliP-~P~~~vny~aG~t 210 (236)
|+.| +|-.+...+||+-
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 7888 6888777777764
No 5
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=15.79 E-value=6.1e+02 Score=22.81 Aligned_cols=18 Identities=0% Similarity=-0.177 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026612 143 VAVGISLPYFIGSHFLHR 160 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~~ 160 (236)
.++.+.++|++++.++++
T Consensus 425 l~ia~~iA~~v~~~~~~~ 442 (465)
T 1ots_A 425 MIITGLGATLLAQFTGGK 442 (465)
T ss_dssp HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 345667788888777643
No 6
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=15.11 E-value=1.9e+02 Score=25.99 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026612 122 SMWVAGMTFGYGFGFLLIMSAVAVGISLPYFI 153 (236)
Q Consensus 122 l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~i 153 (236)
+.++.|+..+.+...+.+.+|+.+|...+..+
T Consensus 238 ~lil~gi~i~S~~~al~Al~Gs~~g~~~a~~l 269 (384)
T 4ezc_A 238 GIFLGAILLSSPLMCLHAAIGSLLGIIAGLSL 269 (384)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555566666666666665544333
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=12.89 E-value=5.4e+02 Score=20.69 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 026612 120 SPSMWVAGMTFGYGFGFL 137 (236)
Q Consensus 120 ~~l~~~aG~lFG~~~G~~ 137 (236)
+...+++|.++|+-.|++
T Consensus 52 tl~V~LaG~~LG~r~G~l 69 (198)
T 4dve_A 52 NMGIMMAGGLLGPKYGTI 69 (198)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHChhHHHH
Confidence 568889999999988865
No 8
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=11.45 E-value=2e+02 Score=25.32 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=29.4
Q ss_pred hccccCCh--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026612 112 FPTLLLPS--SPSMWVAGMTFGYGFGFLLIMSAVAVGISLPYFIG 154 (236)
Q Consensus 112 ~~~~~iP~--~~l~~~aG~lFG~~~G~~~~~~G~~lGa~l~y~ig 154 (236)
-++++.+. +-+.+++|+..+.++..+.+.+|+.+|...+..++
T Consensus 189 gQV~f~~n~~sGllil~gl~i~S~~~al~a~~Gs~vg~~~a~~lg 233 (340)
T 3k3f_A 189 GEVMFQDNIVTGVIFVVAILVNSRISALFAVIGSLVGLCTALIMH 233 (340)
T ss_dssp HGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455554 44777888888888888888888887776665543
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=11.44 E-value=2e+02 Score=17.13 Aligned_cols=16 Identities=31% Similarity=0.739 Sum_probs=12.1
Q ss_pred hHHHHHHHhHHHHHHH
Q 026612 216 PYFLGSLVGMVPEIFV 231 (236)
Q Consensus 216 ~F~l~s~iG~lP~~~~ 231 (236)
+.+.+.++|++|-+++
T Consensus 4 ~lL~GIVlGlipvtla 19 (37)
T 1q90_G 4 PLLCGIVLGLVPVTIA 19 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhHHHHHH
Confidence 3567888999998764
No 10
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=10.55 E-value=84 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=0.0
Q ss_pred eecccCCCCCCCCceeeccccCCCCCCCCcccccc
Q 026612 17 IDIDENNNNNKGDYLKLREYEEGEPGSPRRWSCGK 51 (236)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (236)
|.|+++| -+++||+|.-..+ ++.+-..++.++
T Consensus 15 V~I~evd--~~G~fV~L~N~s~-~~~~L~gW~l~r 46 (123)
T 3hn9_A 15 VCIEEID--VDGKFIRLKNTSE-QDQPMGGWEMIR 46 (123)
T ss_dssp EEEEEEC--TTSSEEEEEECSS-SCEECTTCEEEE
T ss_pred EEEEEEc--CCCCEEEEEECCC-CceecCCcEEEE
Done!