Query 026612
Match_columns 236
No_of_seqs 221 out of 1679
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 17:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026612.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026612hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 13.6 1.5E+02 0.011 18.4 6.1 19 205-223 58-76 (86)
2 d1q90m_ f.23.25.1 (M:) PetM su 12.8 1E+02 0.0076 16.2 4.2 24 132-155 4-28 (34)
3 d1q90g_ f.23.26.1 (G:) PetG su 12.8 86 0.0062 16.3 2.6 16 216-231 4-19 (30)
4 d1a87a_ f.1.1.1 (A:) Colicin N 6.4 5.6E+02 0.041 20.0 7.1 8 93-100 220-227 (297)
5 d1v0ea1 b.68.1.2 (A:245-760) E 5.4 96 0.007 25.6 1.1 42 1-44 295-338 (516)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 5.3 6.8E+02 0.05 19.9 8.7 17 143-159 409-425 (444)
7 d1q90l_ f.23.24.1 (L:) PetL su 5.1 2.4E+02 0.018 14.4 3.7 21 137-158 4-24 (32)
8 d3b5ha2 b.1.1.4 (A:23-102) Cer 4.2 1.5E+02 0.011 19.0 1.3 19 11-33 48-66 (80)
9 d2ba0a2 b.84.4.2 (A:2-52) Exos 4.1 1.2E+02 0.0088 17.6 0.6 18 2-19 21-38 (51)
10 d2raqa1 d.58.61.1 (A:3-95) Unc 3.5 1.6E+02 0.011 19.5 0.9 23 1-23 37-59 (93)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=13.56 E-value=1.5e+02 Score=18.36 Aligned_cols=19 Identities=5% Similarity=-0.265 Sum_probs=11.7
Q ss_pred HhHhhcCCCchhHHHHHHH
Q 026612 205 YCAVATHVKYGPYFLGSLV 223 (236)
Q Consensus 205 y~aG~t~i~~~~F~l~s~i 223 (236)
.+....+++..+++.+.-+
T Consensus 58 ~~L~~~Gi~~t~l~a~~G~ 76 (86)
T d2vv5a3 58 AALGRVGVQTASVIAVLGA 76 (86)
T ss_dssp HHHHTTTCCSTTHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3456667777776665533
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.78 E-value=1e+02 Score=16.20 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Q 026612 132 YGFGFLLIMSAVA-VGISLPYFIGS 155 (236)
Q Consensus 132 ~~~G~~~~~~G~~-lGa~l~y~igR 155 (236)
+..|....++|.+ +|-.++|.+-|
T Consensus 4 fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhhee
Confidence 4455555666543 34455565544
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.78 E-value=86 Score=16.26 Aligned_cols=16 Identities=31% Similarity=0.739 Sum_probs=12.0
Q ss_pred hHHHHHHHhHHHHHHH
Q 026612 216 PYFLGSLVGMVPEIFV 231 (236)
Q Consensus 216 ~F~l~s~iG~lP~~~~ 231 (236)
+.+.+..+|.+|-++.
T Consensus 4 ~ll~GivlGlipiTl~ 19 (30)
T d1q90g_ 4 PLLCGIVLGLVPVTIA 19 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHHH
Confidence 4567888899997764
No 4
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=5.6e+02 Score=20.02 Aligned_cols=8 Identities=25% Similarity=0.160 Sum_probs=4.1
Q ss_pred hccchhHH
Q 026612 93 TTTFSTPV 100 (236)
Q Consensus 93 ~~~~~~p~ 100 (236)
+.+-|.|+
T Consensus 220 eTGNWrPL 227 (297)
T d1a87a_ 220 NTGNWGPL 227 (297)
T ss_dssp TTCCCHHH
T ss_pred cCCCcHHH
Confidence 44555554
No 5
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}
Probab=5.35 E-value=96 Score=25.58 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=27.1
Q ss_pred CccccCCCccccceeeeecccCCCCCCCCceeeccccC--CCCCCC
Q 026612 1 MTYYEDDEVVPELTLRIDIDENNNNNKGDYLKLREYEE--GEPGSP 44 (236)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 44 (236)
|-|+++|----|+.+---.|-.+ ..+.|||-+.+.| ++.||.
T Consensus 295 vgyhn~dv~pr~lg~lyf~daf~--sp~~fvrr~i~~~y~~nasep 338 (516)
T d1v0ea1 295 MGYHQGDVAPREVGLFYFPDAFN--SPSNYVRRQIPSEYEPDASEP 338 (516)
T ss_dssp EEEEECSSSSCEEEEEEETTTTT--CTTCCEEEECCGGGCTTEEEE
T ss_pred EEeccCCcCcceeeEEEcccccC--CccceeeeccchhhcCCCCCc
Confidence 34666665555666655555554 7899999887776 555554
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.30 E-value=6.8e+02 Score=19.85 Aligned_cols=17 Identities=0% Similarity=-0.240 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026612 143 VAVGISLPYFIGSHFLH 159 (236)
Q Consensus 143 ~~lGa~l~y~igR~~g~ 159 (236)
.++++.++|+++|.+++
T Consensus 409 ~~ia~~~a~~v~~~~~~ 425 (444)
T d1otsa_ 409 MIITGLGATLLAQFTGG 425 (444)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 34455666666666654
No 7
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.13 E-value=2.4e+02 Score=14.38 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026612 137 LLIMSAVAVGISLPYFIGSHFL 158 (236)
Q Consensus 137 ~~~~~G~~lGa~l~y~igR~~g 158 (236)
+.+.+|-.+|+ +.|-+|-|+|
T Consensus 4 i~syvglliga-l~~tlgiylg 24 (32)
T d1q90l_ 4 ITSYVGLLIGA-LVFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHHHHHHH
Confidence 34555555554 3344555544
No 8
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=1.5e+02 Score=18.97 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=10.7
Q ss_pred ccceeeeecccCCCCCCCCceee
Q 026612 11 PELTLRIDIDENNNNNKGDYLKL 33 (236)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (236)
.....+|+.|| ..|+|.-.
T Consensus 48 ~~tey~V~~~D----~SGeY~CV 66 (80)
T d3b5ha2 48 QKTEFKVDSDD----QWGEYSCV 66 (80)
T ss_dssp SEEEEEECGGG----CCEEEEEE
T ss_pred CceEEEEecCC----CCceEEEE
Confidence 33444555544 67777654
No 9
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.07 E-value=1.2e+02 Score=17.57 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=9.9
Q ss_pred ccccCCCccccceeeeec
Q 026612 2 TYYEDDEVVPELTLRIDI 19 (236)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (236)
||.|+|+.++.+.=.+|.
T Consensus 21 ty~~~~~i~ss~~G~v~~ 38 (51)
T d2ba0a2 21 TYVEGGKVYAKIIGLFDQ 38 (51)
T ss_dssp EEEETTEEEECSSEEEEE
T ss_pred cEEECCEEEEEEEEEEEE
Confidence 566666665555544443
No 10
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.54 E-value=1.6e+02 Score=19.50 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred CccccCCCccccceeeeecccCC
Q 026612 1 MTYYEDDEVVPELTLRIDIDENN 23 (236)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (236)
.|..|-|.-.-.+.+.||.+|+|
T Consensus 37 itV~EiD~et~~i~itiEG~~id 59 (93)
T d2raqa1 37 ITLMEIDKETENIKVTIQGNDLD 59 (93)
T ss_dssp EEEEEECSSCEEEEEEEECSSCC
T ss_pred EEEEEecccceEEEEEEEecCCC
Done!