Your job contains 1 sequence.
>026613
MLSSITASHVYEKCIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISA
PLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRV
HCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEK
QPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026613
(236 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 607 3.5e-59 1
TAIR|locus:2037593 - symbol:AT1G78910 species:3702 "Arabi... 507 1.4e-48 1
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 224 9.4e-19 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 149 9.2e-12 2
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 169 2.0e-11 1
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 167 6.0e-11 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 157 8.0e-11 2
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 162 3.8e-10 1
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 160 4.1e-10 1
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 156 2.6e-09 1
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 154 2.8e-09 1
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 154 4.3e-09 1
UNIPROTKB|Q5E9Z1 - symbol:RPUSD4 "RNA pseudouridylate syn... 154 4.8e-09 1
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 153 6.4e-09 1
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 148 1.6e-08 1
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 149 2.1e-08 1
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 130 3.6e-08 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 139 5.4e-08 2
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 142 1.1e-07 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 141 1.3e-07 1
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 140 1.7e-07 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 126 6.6e-07 2
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 132 1.7e-06 1
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 129 3.4e-06 1
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 129 4.3e-06 1
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 129 4.3e-06 1
UNIPROTKB|E1C0L7 - symbol:RPUSD1 "Uncharacterized protein... 126 5.3e-06 1
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 130 5.5e-06 1
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 127 6.8e-06 1
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 123 7.6e-06 1
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 123 7.6e-06 1
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 125 1.1e-05 1
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 125 1.1e-05 1
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 125 1.2e-05 1
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 125 1.2e-05 1
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 122 1.4e-05 1
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 122 1.4e-05 1
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 123 1.9e-05 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 120 2.0e-05 1
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 123 2.7e-05 1
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 113 3.6e-05 2
UNIPROTKB|H3BSG4 - symbol:RPUSD1 "RNA pseudouridylate syn... 113 3.7e-05 1
UNIPROTKB|H3BMZ6 - symbol:RPUSD1 "RNA pseudouridylate syn... 113 5.2e-05 1
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 116 5.4e-05 1
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 119 5.4e-05 1
UNIPROTKB|H3BQN8 - symbol:RPUSD1 "RNA pseudouridylate syn... 113 5.6e-05 1
UNIPROTKB|J9NWF9 - symbol:RPUSD3 "Uncharacterized protein... 119 7.6e-05 1
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 116 0.00013 1
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 115 0.00019 1
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 114 0.00024 1
MGI|MGI:2141440 - symbol:Rpusd3 "RNA pseudouridylate synt... 113 0.00032 2
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 117/198 (59%), Positives = 152/198 (76%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y ALV+G P +G ISAPL KVVVD+GKS+RITV +N +++S QHA+T Y+VI+
Sbjct: 278 LKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIES 337
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ + F +S ++N
Sbjct: 338 SPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPF----VSSENNP 393
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLK 218
K+ + FGLDL+ G + KQP LHLH K++ LPN+SQ ++K+Q+SS D+S L++LK
Sbjct: 394 T--KQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLK 451
Query: 219 LVAPLPSHMQRSWDVLNS 236
APLPSHMQ S+++L S
Sbjct: 452 FDAPLPSHMQLSFNLLKS 469
>TAIR|locus:2037593 [details] [associations]
symbol:AT1G78910 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0003723 EMBL:AC005679
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
EMBL:AK176219 EMBL:BT015880 EMBL:BT020453 IPI:IPI00517933
IPI:IPI00929952 PIR:F96818 RefSeq:NP_178012.2 UniGene:At.45151
UniGene:At.50046 ProteinModelPortal:Q5XET6 SMR:Q5XET6 STRING:Q5XET6
PRIDE:Q5XET6 EnsemblPlants:AT1G78910.1 GeneID:844229
KEGG:ath:AT1G78910 TAIR:At1g78910 HOGENOM:HOG000242909
InParanoid:Q5XET6 OMA:LNKPPKV PhylomeDB:Q5XET6
ProtClustDB:CLSN2680811 Genevestigator:Q5XET6 Uniprot:Q5XET6
Length = 478
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 93/200 (46%), Positives = 140/200 (70%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ + ++Q A+T Y+V+ P +G
Sbjct: 279 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKING 338
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D+ + + P
Sbjct: 339 CSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGK--PY 396
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI-----QKVQ-LSSGCDVSKLET 216
+ GLD++ GS+L K P LHLHC+EM LPN+++ + Q+ + L +G + K +
Sbjct: 397 KLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGI-IDKPDL 455
Query: 217 LKLVAPLPSHMQRSWDVLNS 236
L+ VA +PSHM+ SW++++S
Sbjct: 456 LRFVASMPSHMKISWNLMSS 475
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 224 (83.9 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 48/108 (44%), Positives = 68/108 (62%)
Query: 30 KDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 89
++N+N + +++ YWAL+ TP +G I APL KVVV + T+ D A+ A
Sbjct: 550 EENENYSKGIKKTYWALLGSTPTPKEGRIRAPLKKVVVGGFEKVVPTLTTGD---GAKIA 606
Query: 90 VTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+T Y+V++ S + ++ L P TGR HQLRVHCA VL TPI+GD KYG
Sbjct: 607 ITEYKVLESSLTKHCFISLWPETGRTHQLRVHCASVLNTPIIGDPKYG 654
Score = 36 (17.7 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 217 LKLVAPLPSHMQRSWDVL 234
+ + APLP + ++W +
Sbjct: 690 IDISAPLPRELVQNWKTM 707
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 149 (57.5 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 38/106 (35%), Positives = 56/106 (52%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P G I L K G+ +++ VV+ ++ + A+ A T
Sbjct: 169 RNTRKIYWALVAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVHLSELDATPGAKRAHT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Y + +W+ + P+TGR HQLR H A + G PI+GD KYG
Sbjct: 229 YYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGI-GHPIIGDGKYG 273
Score = 64 (27.6 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 222
++ L G + G I+ K +LHLH + ++ + S +KV + AP
Sbjct: 277 QENLGDGWGAQLGGIISK--KLHLHARSLSFEHPSTR-KKVTFT--------------AP 319
Query: 223 LPSHMQRSWD 232
LP HM+ SWD
Sbjct: 320 LPEHMRESWD 329
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 48/154 (31%), Positives = 86/154 (55%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITVVNNDQIM----------- 84
R +++ YWA+ VG+P ++G++ P+ + V + + ++T+ N ++
Sbjct: 168 RQVEKIYWAISVGSPDPAEGIVEIPMVEREVQSHQPHFKMTLAPNYRMSPEDGKVLKIRK 227
Query: 85 --SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+A+ AVT+Y+V+ S + L+L P+TG KHQLRVH A LG PI+GD+KY +H
Sbjct: 228 NRNAESAVTQYRVLASSS-ACSLLELQPITGVKHQLRVHLAYGLGCPILGDHKY---SH- 282
Query: 143 KWKQFHPSDLSKDSNE--EIPKEKTLHFGLDLES 174
W + P L + + + ++ + K+ H L L +
Sbjct: 283 -WSKLAPQKLPEITLKRLKLQQSKSRHLPLHLHA 315
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 167 (63.8 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 53/172 (30%), Positives = 87/172 (50%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV-----VNNDQIM------ 84
R + + YWA+ V P S GV+ P+ K V + ++T+ ++N +++
Sbjct: 178 RQVAKKYWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSR 237
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+A AVT+YQV+ + L+L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 238 NAHLAVTQYQVLSSTLSS-ALLELQPVTGIKHQLRVHLSFGLDCPILGDHKYS-----DW 291
Query: 145 KQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSIL-----EKQPRLHLHCK 189
+ P LS +++ P+ K H L L + ++ ++ L+L CK
Sbjct: 292 NRLAPQKLSVGVLKKLGLPQSKARHIPLHLHARQLILPALQSRKEELNLVCK 343
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 157 (60.3 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
EK+ + R YW +V G + +G+I P+G+ D K + VV+N + +AQ T Y+
Sbjct: 165 EKKAV-REYWTIVHGYLKNKEGIIDLPIGRHPRDRQK---MAVVSNGK--TAQ---TVYK 215
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
V++ G+T ++ LTGR HQ+RVH + LG P++GD KYG Q +
Sbjct: 216 VLEEFNKGFTLIQAKLLTGRTHQIRVHFS-YLGHPVLGDPKYGHQNN 261
Score = 40 (19.1 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 215 ETLKLVAPLPSHMQR 229
E L+ APLP QR
Sbjct: 284 ELLEFTAPLPEDFQR 298
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 162 (62.1 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV-----VNNDQIMSAQ--- 87
R +++ YWA+ V P S GV+ P+ K V + ++T+ ++N +++ +
Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASR 238
Query: 88 --H-AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
H AVT+YQV+ S ++L P+TG KHQLRVH A L PI+GD+KY W
Sbjct: 239 DAHVAVTQYQVLS-STPSSALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYS-----DW 292
Query: 145 KQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
+ P LS + +++ + K + L L + ++ P L +E+ L
Sbjct: 293 NRLAPQKLSAGTLKKLGLQQSKARYIPLHLHARQLI--LPALGSRTEELLL 341
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 160 (61.4 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R++++ Y A+V+G + KGV+ + KV+ K + + NN I + +HA+T++ VI
Sbjct: 165 RLVKKSYLAIVIGELKEKKGVVDCYINKVLF---KGEEVMQCNN--IGNGEHAITQFHVI 219
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
K + ++L PLTGRKHQ+R A + G P++ D KYG
Sbjct: 220 K-KFKNTSLIELFPLTGRKHQIRSQMASI-GHPVLNDGKYG 258
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 156 (60.0 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 50/171 (29%), Positives = 87/171 (50%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV-----VNNDQIMSAQ--- 87
R +++ YWA+ V P S GV+ P+ + V + ++T+ ++N +++ +
Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTLSPSYRLDNGKMVKVRASR 238
Query: 88 --H-AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
H AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 239 DAHVAVTQYQVLS-SASSSALVELQPVTGIKHQLRVHLSFGLDCPILGDHKYS-----DW 292
Query: 145 KQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
+ P LS + +++ + K + L L + ++ P L +E+ L
Sbjct: 293 TRLAPQKLSAGTLKKLGLQQSKARYIPLHLHARQLI--LPALGSRTEELLL 341
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 154 (59.3 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 37/103 (35%), Positives = 59/103 (57%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R +++ Y AL G P+ G I+ ++ N +S + VN+ + Q AVT +
Sbjct: 165 KNRRVEKKYLALTQGIPKNDIGQINHS----IIKNKRSLSLDKVNDSYL---QEAVTSFS 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+K +G L+L P+TGRKHQ+R+H + + G I+GD KYG
Sbjct: 218 VLKKLPYGIGLLELKPITGRKHQIRIHLSHI-GCSIIGDKKYG 259
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 154 (59.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 53/152 (34%), Positives = 79/152 (51%)
Query: 43 YWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRITV-----VNND-----QIMS---AQH 88
Y A+ VG P S+GVI P + + VV ++ + VN D ++ + A
Sbjct: 178 YLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMALSPLFKVNEDGDGVTRVRAHRQAHA 237
Query: 89 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 148
AVTRYQV+ + G + ++L PLTG K+QLRVH A L PI+GD+KY +H W +
Sbjct: 238 AVTRYQVLD-NTSGCSLVELQPLTGVKNQLRVHMALALTCPILGDHKY---SH--WSKLA 291
Query: 149 PSDLSKDSNEEIP--KEKTLHFGLDLESGSIL 178
P L + + + + KT + L L S I+
Sbjct: 292 PQKLPEGTLRRLGLVQSKTRYLPLHLHSRRIV 323
>UNIPROTKB|Q5E9Z1 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 GeneTree:ENSGT00530000063800 EMBL:BT020717
EMBL:BT020773 EMBL:BT020778 EMBL:BT021642 EMBL:BT021761
EMBL:BT025340 EMBL:BT025483 EMBL:BT026244 EMBL:BC134590
IPI:IPI00713333 RefSeq:NP_001015616.1 UniGene:Bt.31431
ProteinModelPortal:Q5E9Z1 Ensembl:ENSBTAT00000027843 GeneID:516934
KEGG:bta:516934 CTD:84881 HOVERGEN:HBG054698 InParanoid:Q5E9Z1
NextBio:20872338 Uniprot:Q5E9Z1
Length = 377
Score = 154 (59.3 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 54/171 (31%), Positives = 80/171 (46%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL------G-----KVVVDNG-KSDRITVVNNDQIM 84
R + + YWA+ V P GV+ P+ G K+ + + D +V
Sbjct: 179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSR 238
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 239 NAQLAVTQYQVLSSSLSA-ALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-----DW 292
Query: 145 KQFHPSDLSKDSNEEI--PKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
+ P LS +++ + K H L L + + P L +E+TL
Sbjct: 293 NRLAPQKLSAGILKKLGLQQSKARHLPLHLHACQLT--LPALQPQKEELTL 341
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 153 (58.9 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 49/172 (28%), Positives = 86/172 (50%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV-----VNNDQIM------ 84
R + + YWA+ V P S GV+ P+ + V + ++T+ ++N +++
Sbjct: 180 RQVAKKYWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNR 239
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+A AVT+Y V+ + ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 240 NAHIAVTQYHVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLNCPILGDHKYS-----DW 293
Query: 145 KQFHPSDLSKDSNEEIPKEKTL--HFGLDLESGSIL-----EKQPRLHLHCK 189
+ P LS + +++ ++T H L L + ++ ++ L L CK
Sbjct: 294 NKLAPQKLSLGTLKKLGLQQTKARHLPLHLHARQLILPALGSRKEELSLVCK 345
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 148 (57.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 43/120 (35%), Positives = 66/120 (55%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y LV G ++G I APLG+ D +I VV+N + A T Y+
Sbjct: 160 KERTVRKYYLTLVQGELHPAEGFIEAPLGR---DPQNRQKIAVVSN-----GRPARTGYK 211
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF-HPSDLS 153
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF H LS
Sbjct: 212 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKETWLKRQFLHAHRLS 269
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 149 (57.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 49/173 (28%), Positives = 89/173 (51%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV-----VNNDQIM----- 84
++++++ YWA+ V P S GV+ P+ K + ++T+ +++ +++
Sbjct: 179 RQVVKK-YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRS 237
Query: 85 -SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
+AQ AVT+YQV+ + ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 238 RNAQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----D 291
Query: 144 WKQFHPSDLSKDSNEEIPKE--KTLHFGLDLESGSIL-----EKQPRLHLHCK 189
W + P LS + +++ E K + L L + ++ + L+L CK
Sbjct: 292 WNRLAPQKLSVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCK 344
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 130 (50.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 38/111 (34%), Positives = 58/111 (52%)
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AQ AVT+YQV+ + ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 209 AQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 262
Query: 146 QFHPSDLSKDSNEEIPKE--KTLHFGLDLESGSIL-----EKQPRLHLHCK 189
+ P LS + +++ E K + L L + ++ + L+L CK
Sbjct: 263 RLAPQKLSVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCK 313
Score = 54 (24.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPL 62
++++++ YWA+ V P S GV+ P+
Sbjct: 179 RQVVKK-YWAITVHVPMPSAGVVDIPI 204
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 139 (54.0 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
+N KR + + Y AL+ G G+I+ PLG + G +++ + Q A
Sbjct: 153 NNSLRKRQINKIYLALIEGPLADKSGIINLPLGLL---EG-----SIIKRAVVPGGQPAC 204
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
T+YQ +K + +T LK+ LTGR HQ+R H A + G P+ GD YG
Sbjct: 205 TKYQTVK-AFPTHTLLKVELLTGRTHQIRAHFAAI-GHPLAGDDLYG 249
Score = 38 (18.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 198 QAIQKVQLSSGCDVSKLETLKLVAPLP 224
QA+ +S ++K +T+ L APLP
Sbjct: 258 QALHLYYISFPHPITK-KTISLYAPLP 283
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 142 (55.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 40/99 (40%), Positives = 52/99 (52%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G+PR KG I +G+ D K + +HAVT ++V
Sbjct: 170 VKRVYLALVYGSPREDKGRIEGAIGRHPTDRKKM-------SGAARHGKHAVTHWRVAAR 222
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G T L+L TGR HQ+RVH AE G P+VGD YG
Sbjct: 223 FT-GVTLLRLRLETGRTHQIRVHMAEA-GFPLVGDEVYG 259
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 141 (54.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 43/137 (31%), Positives = 71/137 (51%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+A++ +KD +R+ + Y ALV G + S+ IS +GK + G++
Sbjct: 75 CVALNKAAAGSAYRCFKD----RRVTKA-YLALVRGHIQESRVTISYAIGKNSTE-GRTH 128
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
+ + + + ++T V++ +G + + L PLTGR HQLRVHC+ LG PI
Sbjct: 129 TMCIEGTQGCENPKPSLTELVVLEHGLYGGDPVSKVLLQPLTGRTHQLRVHCS-ALGHPI 187
Query: 131 VGDYKYGWQTHRKWKQF 147
VGD YG + R+ + F
Sbjct: 188 VGDLTYGQASGREDQPF 204
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 140 (54.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 38/115 (33%), Positives = 63/115 (54%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITV-----VNNDQIM------ 84
R + + YWA+ V P S GV+ P+ + V + ++T+ ++N +++
Sbjct: 180 RQVAKKYWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNR 239
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-W 138
+A AVT+Y V+ + ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 240 NAHIAVTQYHVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLNCPILGDHKYSDW 293
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 126 (49.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R+ ++ YWALV G P + AP+ KV G S R V + A A+T ++
Sbjct: 159 EGRV-EKVYWALVAGMPLADSWQVDAPVAKV----GTS-RYGVA---PVGKA--ALTEFR 207
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ +G T ++ P TGR HQ+RVH A G I+GD YG
Sbjct: 208 VVARG-NGATLVEARPRTGRTHQIRVHLAHG-GLSIIGDTTYG 248
Score = 44 (20.5 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 182 PRLHLHCKEMT 192
PR+ LHC+ MT
Sbjct: 253 PRMMLHCRTMT 263
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 132 (51.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+A++ +KD +R+ + Y ALV G + S+ IS +GK + G++
Sbjct: 75 CVALNKAAAGSAYRCFKD----RRVTKA-YLALVRGHVQESRMTISYAIGKNSTE-GRTH 128
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
+ + + + ++T V++ + + + L PLTGR HQLRVHC+ LG PI
Sbjct: 129 TMCIEGTQGCENPKPSLTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCS-ALGHPI 187
Query: 131 VGDYKYG 137
VGD YG
Sbjct: 188 VGDLTYG 194
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 129 (50.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 40/130 (30%), Positives = 62/130 (47%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+A++ +KD +R+ + Y ALV GT + +GK + GK+
Sbjct: 75 CVALNKAAAGQAYRCFKD----RRVTKA-YLALVRGTVTEENLSLDFAIGKNTTE-GKTH 128
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
+ + + + T V++ + T + L PLTGR HQLRVHC+ + G PI
Sbjct: 129 MMCTEGTEGCENPKPCQTEVTVLEYGTYDGDQVTKVLLQPLTGRTHQLRVHCSAI-GHPI 187
Query: 131 VGDYKYGWQT 140
VGDY Y +T
Sbjct: 188 VGDYTYSLRT 197
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 129 (50.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 38/103 (36%), Positives = 58/103 (56%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KR + R Y A+V+GT G+I P+G+ S + T+++ + +HAVT Y+
Sbjct: 163 QKRDVTREYEAIVIGTMTAG-GMIDKPIGR------HSTKRTLMSVSPM--GKHAVTHYR 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V + +T L+L TGR HQ+RVH A L P++GD YG
Sbjct: 214 VAE-HFREHTRLRLRLETGRTHQIRVHMA-YLQHPLLGDTAYG 254
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 129 (50.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 38/103 (36%), Positives = 58/103 (56%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KR + R Y A+V+GT G+I P+G+ S + T+++ + +HAVT Y+
Sbjct: 163 QKRDVTREYEAIVIGTMTAG-GMIDKPIGR------HSTKRTLMSVSPM--GKHAVTHYR 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V + +T L+L TGR HQ+RVH A L P++GD YG
Sbjct: 214 VAE-HFREHTRLRLRLETGRTHQIRVHMA-YLQHPLLGDTAYG 254
>UNIPROTKB|E1C0L7 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
OMA:MMLHAHL EMBL:AADN02023681 EMBL:AADN02023682 IPI:IPI00585704
Ensembl:ENSGALT00000008518 Uniprot:E1C0L7
Length = 254
Score = 126 (49.4 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 36/110 (32%), Positives = 58/110 (52%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R++ + Y ALV G S+ I +GK V+ G + + + + + + + V+
Sbjct: 92 RLVTKAYLALVRGHVDQSRMTIRYAIGKNTVE-GMTHMMCIEGTEGCENPKPCQSELIVL 150
Query: 97 KPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
+ + T + L PLTGR HQLRVHC+ + G PIVGD+ Y +H+K
Sbjct: 151 EHGSYSGDPVTKVLLQPLTGRTHQLRVHCSAI-GHPIVGDFTY---SHKK 196
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 130 (50.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 40/124 (32%), Positives = 62/124 (50%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQVIK 97
++R Y +L G P +G I P+G+ D+ R+ + + A+HA +RY+VI+
Sbjct: 262 IERVYVSLTTGVPSPPQGRIEIPIGR---DSSNRIRMAAIPGGVRGGRARHAASRYKVIE 318
Query: 98 PSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
G + L L TGR HQ+R H A+ +G P++GD YG T +S+
Sbjct: 319 TFAGGGSALVEWRLETGRTHQIRAH-AKYMGVPLLGDEVYGG-TKSMALSLLQKRVSRSD 376
Query: 157 NEEI 160
EEI
Sbjct: 377 QEEI 380
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 127 (49.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 36/116 (31%), Positives = 64/116 (55%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R+ + Y AL+ G + S+ IS +G+ + G++ + + + + + ++T
Sbjct: 92 ERRVTKA-YLALLRGHIQESRVTISHAIGRNSTE-GRAHTMCIEGSQGCENPKPSLTDLV 149
Query: 95 VIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ + + + L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 150 VLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 204
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 123 (48.4 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 42/120 (35%), Positives = 59/120 (49%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R +Q+ Y AL+ G ++G I PL G + D+ ++ + A+T ++
Sbjct: 95 RAVQKRYVALIEGKLSETQGEIQLPLCGDL--DDRPRQKVCW------QQGKPALTHWET 146
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKWKQFHPSDLS 153
++ T + L P TGR HQLRVHCA LG PIVGD YG Q R + H LS
Sbjct: 147 VQVE-QNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRLF--LHAEQLS 203
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 123 (48.4 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 42/120 (35%), Positives = 59/120 (49%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R +Q+ Y AL+ G ++G I PL G + D+ ++ + A+T ++
Sbjct: 95 RAVQKRYVALIEGKLSETQGEIQLPLCGDL--DDRPRQKVCW------QQGKPALTHWET 146
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKWKQFHPSDLS 153
++ T + L P TGR HQLRVHCA LG PIVGD YG Q R + H LS
Sbjct: 147 VQVE-QNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQDKRLF--LHAEQLS 203
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/106 (33%), Positives = 58/106 (54%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R+ + Y ALV G + S+ I+ +G+ + G++ + + + + ++T
Sbjct: 92 ERRVTKA-YLALVRGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPSLTELL 149
Query: 95 VIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V++ + + + L PLTGR HQLRVHC+ LG PIVGD YG
Sbjct: 150 VLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/106 (33%), Positives = 58/106 (54%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R+ + Y ALV G + S+ I+ +G+ + G++ + + + + ++T
Sbjct: 92 ERRVTKA-YLALVRGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPSLTELL 149
Query: 95 VIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V++ + + + L PLTGR HQLRVHC+ LG PIVGD YG
Sbjct: 150 VLEHGLYSGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 125 (49.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/124 (30%), Positives = 69/124 (55%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V + + + ++ +Q++Y+ALV+G V++APL K V++
Sbjct: 149 TSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS---- 204
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
I VN + + + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D
Sbjct: 205 -IVRVNPN----GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVH-TQYMGHPIAWD 257
Query: 134 YKYG 137
+YG
Sbjct: 258 DRYG 261
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 125 (49.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/124 (30%), Positives = 69/124 (55%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V + + + ++ +Q++Y+ALV+G V++APL K V++
Sbjct: 149 TSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS---- 204
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
I VN + + + TR+++++ T ++ SP+TGR HQ+RVH + +G PI D
Sbjct: 205 -IVRVNPN----GKPSETRFRILEKFAEA-TLVQASPVTGRTHQIRVH-TQYMGHPIAWD 257
Query: 134 YKYG 137
+YG
Sbjct: 258 DRYG 261
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/123 (32%), Positives = 64/123 (52%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I + + ++ +K R+ + Y+A V G ++G ++ PL D
Sbjct: 67 TSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPL---CCDWPNRP 123
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ V + + ++TRYQV+K T ++L P+TGR HQLRVH + LG PIVGD
Sbjct: 124 KQKVCFEE----GRDSLTRYQVVKRE-EKTTVVRLIPITGRSHQLRVHM-QSLGHPIVGD 177
Query: 134 YKY 136
Y
Sbjct: 178 DLY 180
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/123 (32%), Positives = 64/123 (52%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I + + ++ +K R+ + Y+A V G ++G ++ PL D
Sbjct: 67 TSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPL---CCDWPNRP 123
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ V + + ++TRYQV+K T ++L P+TGR HQLRVH + LG PIVGD
Sbjct: 124 KQKVCFEE----GRDSLTRYQVVKRE-EKTTVVRLIPITGRSHQLRVHM-QSLGHPIVGD 177
Query: 134 YKY 136
Y
Sbjct: 178 DLY 180
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 123 (48.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 34/116 (29%), Positives = 63/116 (54%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R+ + Y ALV G + S+ I+ +G+ + G++ + + + + + ++T
Sbjct: 92 ERRVTKA-YLALVRGHVQESRMTINYAIGRNSTE-GRAHTMCIEGTEGCENPKPSLTELV 149
Query: 95 VIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ + + + L PLTGR HQLRVHC+ L P+VGD YG + ++ + F
Sbjct: 150 VLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCS-ALSHPVVGDLTYGQASDQEDQPF 204
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 120 (47.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 40/124 (32%), Positives = 59/124 (47%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVNNDQIMSAQHAVTR 92
E+R Q+ Y A V G ++G + PL + D N ++ N + ++ ++
Sbjct: 91 EQRKTQKSYLARVWGLVELNEGSVDLPL---ISDWPNRPKQKVDHENGKKSLTHYRVLSH 147
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ---THRKWKQFHP 149
I + T L+L+P+TGR HQLRVH LG PI+GD Y + T R Q H
Sbjct: 148 NDSIDEQAN--TLLELTPITGRSHQLRVHML-ALGHPILGDRLYAPEEALTMRNRLQLHA 204
Query: 150 SDLS 153
LS
Sbjct: 205 LKLS 208
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 123 (48.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 39/124 (31%), Positives = 66/124 (53%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+ V+ T+ + + D +Q++Y ALV G ++ L K + +G +
Sbjct: 193 CLMVAKKRSTLRHLHEQFRDKN---VQKFYHALVKGHWPTKLTRVTDALKKNDLKSG--E 247
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ VV+N Q+ + + TR++V++ G T ++ P+TGR HQ+RVHC + G I D
Sbjct: 248 RVVVVDN-QL--GKESETRFRVLE-RYRGATLVRAFPVTGRTHQIRVHC-QTSGHSIAMD 302
Query: 134 YKYG 137
KYG
Sbjct: 303 AKYG 306
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 113 (44.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 36/102 (35%), Positives = 53/102 (51%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R ++ Y A + G G + PL +VD R V + + + AVT ++
Sbjct: 86 EERKTRKTYVARLWGRLEPKTGTVDLPL---IVDWPNRPRQMVCHE----TGKPAVTDWR 138
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
V++ T ++L P TGR HQLRVHC + LG PI+GD Y
Sbjct: 139 VLRYE-GDTTRVRLLPRTGRSHQLRVHC-QALGHPILGDPFY 178
Score = 36 (17.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 182 PRLHLHCKEMTL 193
PRL LH +E+ L
Sbjct: 187 PRLMLHSEELRL 198
>UNIPROTKB|H3BSG4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000565377 Bgee:H3BSG4 Uniprot:H3BSG4
Length = 173
Score = 113 (44.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 108 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 37 LKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 75
>UNIPROTKB|H3BMZ6 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000569601 Bgee:H3BMZ6 Uniprot:H3BMZ6
Length = 181
Score = 113 (44.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 108 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 40 LKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 78
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 116 (45.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 37/123 (30%), Positives = 60/123 (48%)
Query: 18 SSGIITVERVMYKDNDNEKRILQR----WYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I V + + +++ +R Y A V G P ++G++ PL + D
Sbjct: 67 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPL---ICDWPNRP 123
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ V + + A T Y+V++ + + L P+TGR HQLRVH LG PI+GD
Sbjct: 124 KQKVCYE----TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHML-ALGHPILGD 178
Query: 134 YKY 136
Y
Sbjct: 179 RFY 181
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 119 (46.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 41/136 (30%), Positives = 68/136 (50%)
Query: 9 HVYEKCIAVSSGIITVER--VMYKDNDNEKRI--LQRWYWALVVGTPRCSKGVISAPLGK 64
H+ + +SG++ + R + + E R +++ Y A+ G P SKG I+ P+
Sbjct: 120 HIVHRLDRDTSGVLIIARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITMPI-Y 178
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
+G + T++ + A T + V++ S L LSP+TGRKHQLR+H ++
Sbjct: 179 CKKQSGVGE--TLIPKE-------AKTVFSVLQSSKRHAVML-LSPVTGRKHQLRIHLSQ 228
Query: 125 VLGTPIVGDYKYGWQT 140
PI+GD KY T
Sbjct: 229 FC-CPIIGDTKYSKDT 243
>UNIPROTKB|H3BQN8 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 EMBL:CH471112 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL031033 UniGene:Hs.101742
HGNC:HGNC:14173 SMR:H3BQN8 Ensembl:ENST00000567114 Uniprot:H3BQN8
Length = 183
Score = 113 (44.8 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 108 LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
L PLTGR HQLRVHC+ LG P+VGD YG + R+ + F
Sbjct: 37 LKPLTGRTHQLRVHCS-ALGHPVVGDLTYGEVSGREDRPF 75
>UNIPROTKB|J9NWF9 [details] [associations]
symbol:RPUSD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 CTD:285367 OMA:FSRTLQC
GeneTree:ENSGT00530000063800 EMBL:AAEX03012078 RefSeq:XP_541778.3
Ensembl:ENSCAFT00000047015 GeneID:484663 KEGG:cfa:484663
Uniprot:J9NWF9
Length = 352
Score = 119 (46.9 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 55/198 (27%), Positives = 81/198 (40%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR----YQVIKP 98
YWA+ G P S+G I A L +D D + V + Q V R + V+
Sbjct: 172 YWAITDGIPATSEGNIQAALKLEHIDG--VDLVIPVKSPSRKDFQEGVKRTLSHFHVVAM 229
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ--FHPSDLSKDS 156
G ++L PLT QL+VH L P++GD+ Y + Q P++ +K
Sbjct: 230 GS-GCALVQLQPLTVFPSQLQVHMVLQL-CPVLGDHTYSARVGTVLGQRFLLPAESTKPQ 287
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
+ +P E L L L + LHLHC + LP + +
Sbjct: 288 RQ-VPDEALLR-RLRLTPSQAAQLPLHLHLHC--LHLPGMRP--------------REAP 329
Query: 217 LKLVAPLPSHMQRSWDVL 234
+KL+APLP + RS L
Sbjct: 330 MKLLAPLPPYFSRSLQCL 347
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 34/103 (33%), Positives = 57/103 (55%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++++ Y LV G + + + PL K + +G +R+ V + + AVT ++
Sbjct: 163 QRKVIKQ-YLLLVKGQWQGGECRVEVPLKKNRLQSG--ERMVKVEKE----GKSAVTVFR 215
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+K + ++ PLTGR HQ+RVH A LG PI GD KYG
Sbjct: 216 PLK-IFEQASLIEAKPLTGRTHQIRVHAAH-LGYPIAGDEKYG 256
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS-DRITVVNNDQIMSAQHAVTRY 93
+ R + R Y +V+G G I+AP+G+ +G+ R+ V+ + AV+ Y
Sbjct: 162 QSRSVSRIYECIVIGVVTAG-GKINAPIGR----HGQQRQRMAVMEG-----GKQAVSHY 211
Query: 94 QVIKP-SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+V++ H + +KL TGR HQ+RVH A + P+VGD YG
Sbjct: 212 RVLERFRSHTHVRVKLE--TGRTHQIRVHMAHI-NFPLVGDPAYG 253
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G + + APL K ++ +G +RI V+ + + + TR++V +
Sbjct: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSG--ERIVRVSQE----GKPSETRFKVEER 225
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
T ++ SP+TGR HQ+RVH + G PI D +YG
Sbjct: 226 YAFA-TLVRCSPVTGRTHQIRVH-TQYAGHPIAFDDRYG 262
>MGI|MGI:2141440 [details] [associations]
symbol:Rpusd3 "RNA pseudouridylate synthase domain
containing 3" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:2141440
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 CTD:285367 HOGENOM:HOG000082513 HOVERGEN:HBG098171
OrthoDB:EOG4R23VC OMA:FSRTLQC EMBL:AK076749 EMBL:AK133871
EMBL:BC038081 EMBL:BC116825 EMBL:BC116827 IPI:IPI00229799
IPI:IPI00459320 RefSeq:NP_001028376.1 UniGene:Mm.31204
ProteinModelPortal:Q14AI6 SMR:Q14AI6 PhosphoSite:Q14AI6
PRIDE:Q14AI6 Ensembl:ENSMUST00000113092 Ensembl:ENSMUST00000129047
GeneID:101122 KEGG:mmu:101122 UCSC:uc009dfy.2 UCSC:uc009dga.1
GeneTree:ENSGT00530000063800 InParanoid:Q14AI6 NextBio:354774
Bgee:Q14AI6 CleanEx:MM_RPUSD3 Genevestigator:Q14AI6 Uniprot:Q14AI6
Length = 344
Score = 113 (44.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 44/157 (28%), Positives = 72/157 (45%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVN---NDQIMSAQHAVTRYQVIKPS 99
Y A+ G P S+G + PL K+ N + V++ D + ++R+ V+
Sbjct: 164 YCAVTDGIPEPSEGTVCMPL-KMEQMNDVDLAVPVMSPSRKDIQEGVKRTLSRFHVMATG 222
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ--FHPSDLSKDSN 157
G ++L PLT +QL+VH A L PI+GD+ Y + Q P++ +K
Sbjct: 223 -RGCALVQLQPLTVFPNQLQVHMALQL-CPILGDHTYAARVGTVLGQRFLWPAETTKPQR 280
Query: 158 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
+ + + H L S S + + P LHLH + LP
Sbjct: 281 QVLDEALLRHLRL---SPSQVAQMP-LHLHLHRLLLP 313
Score = 36 (17.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 218 KLVAPLPSHMQRSWDVL 234
+L+APLP + R+ L
Sbjct: 323 ELLAPLPPYFSRTLQCL 339
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 236 236 0.00089 113 3 11 22 0.43 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 606 (64 KB)
Total size of DFA: 214 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.85u 0.09s 20.94t Elapsed: 00:00:01
Total cpu time: 20.85u 0.09s 20.94t Elapsed: 00:00:01
Start: Fri May 10 22:15:10 2013 End: Fri May 10 22:15:11 2013