BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026613
(236 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225428918|ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
vinifera]
gi|296090438|emb|CBI40257.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 151/206 (73%), Positives = 179/206 (86%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D D +KRILQR YWALV+G+PR +G+ISAPLGKVVVD+GKS+RIT+V+N Q MS+QHA+
Sbjct: 271 DIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAI 330
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T Y+VIK SCHGYTWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HRKWKQ S
Sbjct: 331 TEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQS 390
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
++ K+ +E + KT FGLDLESGSIL+KQP LHLHCK+M LPNVS A+Q +QLS+ CD
Sbjct: 391 NIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECD 450
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLNS 236
+S+LE+L+ VAPLPSHMQRSWD+LNS
Sbjct: 451 LSELESLEFVAPLPSHMQRSWDILNS 476
>gi|255555275|ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542055|gb|EEF43599.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 536
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/206 (69%), Positives = 168/206 (81%), Gaps = 1/206 (0%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D +RILQR YWALV+G+PR KG+ISAPLGKVVVD+GKSDRITVV N + S QHAV
Sbjct: 332 DIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAV 391
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T+Y+V++ S HGY WL+LSP+TGRKHQLRVHCAEVLGTPIVGDYKYGWQ HRKWKQ
Sbjct: 392 TQYRVME-SSHGYAWLELSPITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFP 450
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
+L K SNE +K L FG+DLESGSI EK PRLHLHCK+M LP+VSQA++ VQ SS D
Sbjct: 451 NLEKISNENALCKKILPFGIDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYD 510
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLNS 236
S L++++L APLPS+MQRSWD+LNS
Sbjct: 511 FSDLKSIELDAPLPSYMQRSWDILNS 536
>gi|224105621|ref|XP_002313876.1| predicted protein [Populus trichocarpa]
gi|222850284|gb|EEE87831.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/216 (66%), Positives = 174/216 (80%), Gaps = 4/216 (1%)
Query: 22 ITVERVMYKDND---NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV 78
I E+ + ND N++RILQR YWALV+G+PR KG+ISAPLGKVVVDNGKSDRITVV
Sbjct: 110 IFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVV 169
Query: 79 NNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 138
N Q +S+QHAVT+Y+VI+ S HG+TWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKY W
Sbjct: 170 ENSQNLSSQHAVTQYRVIE-SSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAW 228
Query: 139 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 198
Q HR WKQ S++ +SN++ EK L F LDL+SGSI EK PRLHLHCK+M LP+VS+
Sbjct: 229 QAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSK 288
Query: 199 AIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
A+Q VQLSS D S+L +LK APLP +M++SWD+L
Sbjct: 289 ALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 324
>gi|356495831|ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
max]
Length = 427
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 164/205 (80%), Gaps = 1/205 (0%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D EKRILQR YWALV+G PR KG+++A LGKVVVDNG+SDRIT+V+N +MS+QHA+
Sbjct: 223 DIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAI 282
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T Y+VI S GYTWL+L+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HRKW F
Sbjct: 283 TEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLP 342
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
++ +DS EE+ E+ L FGL+L GSI E PRLHLHCK+M LPN+SQA+Q VQ +S CD
Sbjct: 343 NV-EDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCD 401
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
+S +E L+LVA LP +MQRSWDV N
Sbjct: 402 LSLVEELELVADLPPYMQRSWDVTN 426
>gi|358343831|ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
gi|355501934|gb|AES83137.1| RNA pseudourine synthase [Medicago truncatula]
Length = 430
Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 139/213 (65%), Positives = 170/213 (79%), Gaps = 3/213 (1%)
Query: 26 RVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS 85
R ++ND EK ILQR YWALV+G PR S GV++APLGKVVVDNGKSDRIT+V+N ++S
Sbjct: 219 RASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLS 278
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
+QHAVT Y+VI S HG+TWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKYG Q H+KW
Sbjct: 279 SQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWG 338
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ- 204
QF S+L +DS EE KE+ L FGL+L GSI +K PRLHLHCK++ LPN+SQA+Q VQ
Sbjct: 339 QFDFSNL-EDSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQALQNVQS 397
Query: 205 -LSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 236
S D+S +E+L+L A LP +M++SW+V NS
Sbjct: 398 VSDSSYDLSAVESLELEADLPPYMKKSWEVTNS 430
>gi|449438639|ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 466
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/204 (61%), Positives = 161/204 (78%), Gaps = 8/204 (3%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D+EK+IL + YWALV+G+PR SKG+I+APLGK+V+D+G+S++I V++N + M Q A+T+
Sbjct: 271 DSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQ 330
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
Y+VIK S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ WK F S+
Sbjct: 331 YKVIK-SHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFC-SNF 388
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
K+ K++ L FGLD ESGSI E PRLHLHCK++TLP+VS A+ L C S
Sbjct: 389 HKNQG----KKQFLPFGLDFESGSIAENNPRLHLHCKQLTLPDVSFALHNDSLDRDC--S 442
Query: 213 KLETLKLVAPLPSHMQRSWDVLNS 236
+LE L+L APLPS+MQ+SWD++NS
Sbjct: 443 RLECLELDAPLPSYMQKSWDIINS 466
>gi|449526979|ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/203 (61%), Positives = 160/203 (78%), Gaps = 8/203 (3%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D+EK+IL + YWALV+G+PR SKG+I+APLGK+V+D+G+S++I V++N + M Q A+T+
Sbjct: 276 DSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQ 335
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
Y+VIK S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ WK F S+
Sbjct: 336 YKVIK-SHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFC-SNF 393
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
K+ K++ L FGLD ESGSI E PRLHLHCK++TLP+VS A+ L C S
Sbjct: 394 HKNQG----KKQFLPFGLDFESGSIAENSPRLHLHCKQLTLPDVSFALHNDSLDRDC--S 447
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+LE L+L APLPS+MQ+SWD++N
Sbjct: 448 RLECLELDAPLPSYMQKSWDIIN 470
>gi|357154257|ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like
[Brachypodium distachyon]
Length = 465
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/205 (55%), Positives = 146/205 (71%), Gaps = 4/205 (1%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D +++LQR Y ALV+GTPR SKG++SAPL KV++ +GKS+R+TV S Q A+T
Sbjct: 261 DGTQQVLQRKYVALVIGTPRHSKGLLSAPLAKVLLQDGKSERLTVKAGPNTTSVQDALTE 320
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
Y+VI+ G+TWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYG Q H+ W P
Sbjct: 321 YRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNW---SPLPA 377
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGC-DV 211
+ EE+ K++ L FGL L GS++E+QP+LHLHCK+M LP++S A+Q +Q D
Sbjct: 378 PQAIEEELLKKRRLPFGLVLGGGSVVEEQPQLHLHCKQMVLPDISAAVQGLQSEDADRDF 437
Query: 212 SKLETLKLVAPLPSHMQRSWDVLNS 236
S LE L VAPLP HM+ SW+VL S
Sbjct: 438 SDLEKLSFVAPLPQHMRLSWEVLKS 462
>gi|297830600|ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329022|gb|EFH59441.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/198 (59%), Positives = 149/198 (75%), Gaps = 6/198 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y ALV+G PR KG ISAPL KVVVD+GKSDRITV +N +++S QHA+T Y+VI+
Sbjct: 278 LKRKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIES 337
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S HGYTWL+L PLTGRKHQLRVHCAEVLGTPI+GDYKYGWQ H+ + F S+ +
Sbjct: 338 SPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKAREPFVSSETTPTKPS 397
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLK 218
P FGLDL+ G + KQP LHLH K++ LPN+SQ ++K+Q+SS D+S L++LK
Sbjct: 398 SSP------FGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLK 451
Query: 219 LVAPLPSHMQRSWDVLNS 236
APLPSHMQ S+++L S
Sbjct: 452 FDAPLPSHMQLSFNLLKS 469
>gi|326504872|dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 472
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 147/205 (71%), Gaps = 4/205 (1%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D +++LQR Y ALV+GTPR KG++SAPL KV++ +GKS+R+TV S Q A+T
Sbjct: 268 DGTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNTTSVQDALTE 327
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
Y+VI+ G+TWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYG Q H+ W P +
Sbjct: 328 YRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQDWT---PLPV 384
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGC-DV 211
S+ ++E+ +++ L FGL L GSI E+QP+LHLHCK+M LP++S A+Q +Q D
Sbjct: 385 SQTVDKELLRKQRLPFGLVLGGGSIAEQQPQLHLHCKQMMLPDISAAVQGLQSEDADRDF 444
Query: 212 SKLETLKLVAPLPSHMQRSWDVLNS 236
S LE L VAPLP HM+ SW+VL S
Sbjct: 445 SDLEKLSFVAPLPLHMRLSWEVLKS 469
>gi|218201639|gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
Length = 465
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 147/205 (71%), Gaps = 4/205 (1%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+TV + S Q A+T
Sbjct: 261 DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAASVQDALTE 320
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H+KW P L
Sbjct: 321 YRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKW---MPLPL 377
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSS-GCDV 211
+ +EE+ +++ L FGL + GSI E+QP+LHLHCK+M LP+VS A+ ++Q S D
Sbjct: 378 PRTIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVNPDF 437
Query: 212 SKLETLKLVAPLPSHMQRSWDVLNS 236
S LE L VAPLP HM+ SW++L S
Sbjct: 438 SDLEKLNFVAPLPLHMRLSWEILKS 462
>gi|222641041|gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
Length = 465
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/205 (54%), Positives = 147/205 (71%), Gaps = 4/205 (1%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+T+ + S Q A+T
Sbjct: 261 DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTE 320
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H+KW P L
Sbjct: 321 YRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKW---MPLPL 377
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSS-GCDV 211
+ +EE+ +++ L FGL + GSI E+QP+LHLHCK+M LP+VS A+ ++Q S D
Sbjct: 378 PRTIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVNPDF 437
Query: 212 SKLETLKLVAPLPSHMQRSWDVLNS 236
S LE L VAPLP HM+ SW++L S
Sbjct: 438 SDLEKLNFVAPLPLHMRLSWEILKS 462
>gi|15230381|ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|11994467|dbj|BAB02469.1| unnamed protein product [Arabidopsis thaliana]
gi|110737723|dbj|BAF00800.1| hypothetical protein [Arabidopsis thaliana]
gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis thaliana]
gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
Length = 477
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/198 (59%), Positives = 152/198 (76%), Gaps = 6/198 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y ALV+G P +G ISAPL KVVVD+GKS+RITV +N +++S QHA+T Y+VI+
Sbjct: 278 LKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIES 337
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S HGYTWL+L PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+ + F +S ++N
Sbjct: 338 SPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPF----VSSENNP 393
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLK 218
K+ + FGLDL+ G + KQP LHLH K++ LPN+SQ ++K+Q+SS D+S L++LK
Sbjct: 394 T--KQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLK 451
Query: 219 LVAPLPSHMQRSWDVLNS 236
APLPSHMQ S+++L S
Sbjct: 452 FDAPLPSHMQLSFNLLKS 469
>gi|238013094|gb|ACR37582.1| unknown [Zea mays]
Length = 272
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/206 (53%), Positives = 145/206 (70%), Gaps = 4/206 (1%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
D +++LQR Y ALV+G PR KG++SAPL KVV+ +G+S+R+TV S Q A+T
Sbjct: 67 GDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGSNTASVQDALT 126
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H+ W P
Sbjct: 127 EYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWM---PLP 183
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGC-D 210
+ + ++E+ K++ L FGL L GS+ E+QP+LHLHCK+M LP++S A+Q+++ S D
Sbjct: 184 MPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDADHD 243
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLNS 236
S LE L VAPLP HMQ SW +L S
Sbjct: 244 FSDLEKLSFVAPLPLHMQLSWKILLS 269
>gi|42408521|dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group]
gi|42409169|dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group]
Length = 340
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 140/202 (69%), Gaps = 7/202 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + + I AQ AVT Y+V+ P
Sbjct: 139 MQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGP 197
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D + E
Sbjct: 198 TIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE 257
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKL 214
P + GL+++ GS+L K P LHLHC+EM +PN+++ + + + K
Sbjct: 258 --PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKP 315
Query: 215 ETLKLVAPLPSHMQRSWDVLNS 236
L+ +AP+P+HM+ SW++++S
Sbjct: 316 NLLRFIAPMPAHMKISWNIMSS 337
>gi|125604035|gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 140/202 (69%), Gaps = 7/202 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + + I AQ AVT Y+V+ P
Sbjct: 308 MQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGP 366
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D + E
Sbjct: 367 TIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE 426
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKL 214
P + GL+++ GS+L K P LHLHC+EM +PN+++ + + + K
Sbjct: 427 --PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKP 484
Query: 215 ETLKLVAPLPSHMQRSWDVLNS 236
L+ +AP+P+HM+ SW++++S
Sbjct: 485 NLLRFIAPMPAHMKISWNIMSS 506
>gi|115477338|ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA pseudourine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|125562210|gb|EAZ07658.1| hypothetical protein OsI_29911 [Oryza sativa Indica Group]
Length = 475
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 140/202 (69%), Gaps = 7/202 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+QR YWALV+GTP+ +G+ISAPL KV++D+GK++R+ + + I AQ AVT Y+V+ P
Sbjct: 274 MQR-YWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGP 332
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
+ HG +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D + E
Sbjct: 333 TIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE 392
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKL 214
P + GL+++ GS+L K P LHLHC+EM +PN+++ + + + K
Sbjct: 393 --PYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKEKP 450
Query: 215 ETLKLVAPLPSHMQRSWDVLNS 236
L+ +AP+P+HM+ SW++++S
Sbjct: 451 NLLRFIAPMPAHMKISWNIMSS 472
>gi|357141930|ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
[Brachypodium distachyon]
Length = 479
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 140/202 (69%), Gaps = 7/202 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
LQR YWALV+GTP+ S+GVISAPL KV++D+GK++R+ + + I AQ AVT Y+V+ P
Sbjct: 278 LQR-YWALVIGTPKESEGVISAPLTKVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGP 336
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D + E
Sbjct: 337 TINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE 396
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKL 214
+ + GL+++ GS+L K P LHLHC+EM +PN+++ + + K
Sbjct: 397 QYKLRRP--EGLEVQKGSVLSKVPLLHLHCREMVVPNIAKFLSNTGDWHDDGTPWSKEKP 454
Query: 215 ETLKLVAPLPSHMQRSWDVLNS 236
L+ +AP+P+HM+ SW++++S
Sbjct: 455 NLLRFIAPMPAHMKISWNIMSS 476
>gi|326522893|dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 357
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/202 (49%), Positives = 142/202 (70%), Gaps = 7/202 (3%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
LQR YWALV+GTP S+GVISAPL KV++D+GK++R+ + + I AQ AVT Y+V+ P
Sbjct: 156 LQR-YWALVIGTPTESEGVISAPLTKVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGP 214
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
+ +G +W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D + E
Sbjct: 215 TINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGE 274
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL--SSGCDVSKLET 216
P + GL+++ GS+L K P LHLHC+EM +PN+++ + +G SK +
Sbjct: 275 --PYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAKFLSNTGEWHDNGTPWSKEKP 332
Query: 217 --LKLVAPLPSHMQRSWDVLNS 236
L+ +AP+P+HM+ SW++++S
Sbjct: 333 NLLRFIAPMPAHMKISWNIMSS 354
>gi|413921569|gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 340
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 135/198 (68%), Gaps = 6/198 (3%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+GTP+ +GVISAP+ KV++D+GK++R+ + + I AQ A+T Y+V+ P+ +G
Sbjct: 142 YWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTING 201
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H+ WKQ D + E P
Sbjct: 202 CSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGE--PY 259
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKLETLK 218
+ GL+++ GS+L K P LHLHC+EM +PN+++ + + + K L+
Sbjct: 260 KLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGGWHENGTPWAKEKPNLLR 319
Query: 219 LVAPLPSHMQRSWDVLNS 236
VAP+P HM+ SW++++S
Sbjct: 320 FVAPMPPHMKISWNIMSS 337
>gi|413921570|gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 478
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 135/198 (68%), Gaps = 6/198 (3%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+GTP+ +GVISAP+ KV++D+GK++R+ + + I AQ A+T Y+V+ P+ +G
Sbjct: 280 YWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTING 339
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H+ WKQ D + E P
Sbjct: 340 CSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGE--PY 397
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKLETLK 218
+ GL+++ GS+L K P LHLHC+EM +PN+++ + + + K L+
Sbjct: 398 KLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGGWHENGTPWAKEKPNLLR 457
Query: 219 LVAPLPSHMQRSWDVLNS 236
VAP+P HM+ SW++++S
Sbjct: 458 FVAPMPPHMKISWNIMSS 475
>gi|449441766|ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 152/242 (62%), Gaps = 26/242 (10%)
Query: 18 SSGIITVERV---------MYKDNDNEKRILQRW----------YWALVVGTPRCSKGVI 58
SSGI+ + R ++ + N K + W YWALV+G PR +GVI
Sbjct: 230 SSGILLMGRTKESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVI 289
Query: 59 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 118
SAPL KV++D+GK++R+ + N I ++Q A+T Y+V+ P+ +G +W++L P T RKHQL
Sbjct: 290 SAPLSKVLLDDGKTERVVLANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQL 349
Query: 119 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 178
R+HCAE LGTPIVGDYKYGW HR+WKQ D+ S P + GLD++ GS+L
Sbjct: 350 RIHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGR--PYKLRRPEGLDVQKGSVL 407
Query: 179 EKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD--VSKLET--LKLVAPLPSHMQRSWDVL 234
K P LHLHC+E+ LPN+++ + V G + VS ++ L+ VA +PSHM+ SW+++
Sbjct: 408 SKVPLLHLHCRELVLPNIAKFLN-VFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLM 466
Query: 235 NS 236
+S
Sbjct: 467 SS 468
>gi|293331663|ref|NP_001167875.1| uncharacterized protein LOC100381582 [Zea mays]
gi|223944581|gb|ACN26374.1| unknown [Zea mays]
Length = 237
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 135/198 (68%), Gaps = 6/198 (3%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+GTP+ +GVISAP+ KV++D+GK++R+ + + I AQ A+T Y+V+ P+ +G
Sbjct: 39 YWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTING 98
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H+ WKQ D + E P
Sbjct: 99 CSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGE--PY 156
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKLETLK 218
+ GL+++ GS+L K P LHLHC+EM +PN+++ + + + K L+
Sbjct: 157 KLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGGWHENGTPWAKEKPNLLR 216
Query: 219 LVAPLPSHMQRSWDVLNS 236
VAP+P HM+ SW++++S
Sbjct: 217 FVAPMPPHMKISWNIMSS 234
>gi|449490137|ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 152/242 (62%), Gaps = 26/242 (10%)
Query: 18 SSGIITVERV---------MYKDNDNEKRILQRW----------YWALVVGTPRCSKGVI 58
SSGI+ + R ++ + N K + W YWALV+G PR +GVI
Sbjct: 230 SSGILLMGRTKESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVI 289
Query: 59 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 118
SAPL KV++D+GK++R+ + N I ++Q A+T Y+V+ P+ +G +W++L P T RKHQL
Sbjct: 290 SAPLSKVLLDDGKTERVILANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQL 349
Query: 119 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 178
R+HCAE LGTPIVGDYKYGW HR+WKQ D+ S P + GLD++ GS+L
Sbjct: 350 RIHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGR--PYKLRRPEGLDVQKGSVL 407
Query: 179 EKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD--VSKLET--LKLVAPLPSHMQRSWDVL 234
K P LHLHC+E+ LPN+++ + V G + VS ++ L+ VA +PSHM+ SW+++
Sbjct: 408 SKVPLLHLHCRELVLPNIAKFLN-VFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLM 466
Query: 235 NS 236
+S
Sbjct: 467 SS 468
>gi|51970580|dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
Length = 326
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 138/200 (69%), Gaps = 9/200 (4%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ + ++Q A+T Y+V+ P +G
Sbjct: 127 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKING 186
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D+ + + P
Sbjct: 187 CSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGK--PY 244
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ------LSSGCDVSKLET 216
+ GLD++ GS+L K P LHLHC+EM LPN+++ + + L +G + K +
Sbjct: 245 KLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGI-IDKPDL 303
Query: 217 LKLVAPLPSHMQRSWDVLNS 236
L+ VA +PSHM+ SW++++S
Sbjct: 304 LRFVASMPSHMKISWNLMSS 323
>gi|42563328|ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA pseudourine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis thaliana]
gi|56790228|gb|AAW30031.1| At1g78910 [Arabidopsis thaliana]
gi|332198052|gb|AEE36173.1| RNA pseudourine synthase 3 [Arabidopsis thaliana]
Length = 478
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 138/200 (69%), Gaps = 9/200 (4%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ + ++Q A+T Y+V+ P +G
Sbjct: 279 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKING 338
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L P+T RKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D+ + + P
Sbjct: 339 CSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGK--PY 396
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ------LSSGCDVSKLET 216
+ GLD++ GS+L K P LHLHC+EM LPN+++ + + L +G + K +
Sbjct: 397 KLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGI-IDKPDL 455
Query: 217 LKLVAPLPSHMQRSWDVLNS 236
L+ VA +PSHM+ SW++++S
Sbjct: 456 LRFVASMPSHMKISWNLMSS 475
>gi|226501200|ref|NP_001151637.1| LOC100285271 [Zea mays]
gi|195648278|gb|ACG43607.1| RNA binding protein [Zea mays]
Length = 439
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 127/177 (71%), Gaps = 3/177 (1%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
D +++LQR Y ALV+G PR KG++SAPL KVV+ +G+S+R+TV S Q A+T
Sbjct: 257 GDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCAGSNTASVQDALT 316
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y+VI+ GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG Q H+ W P
Sbjct: 317 EYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNW---MPLP 373
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSG 208
+ + ++E+ K++ L FGL L GS+ E+QP+LHLHCK+M LP++S A+Q+++ S
Sbjct: 374 MPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAMQQLRSSDA 430
>gi|242079953|ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
gi|241941095|gb|EES14240.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
Length = 439
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 134/198 (67%), Gaps = 6/198 (3%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+GTP+ +GVI AP+ KV++D+GK++R+ + + I AQ A+T Y+V+ P+ +G
Sbjct: 241 YWALVIGTPKEREGVICAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTING 300
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+W++L PLTGRKHQLRVHCAE LGTPIVGDYKYGW H+ WKQ D + E P
Sbjct: 301 CSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGE--PY 358
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV----QLSSGCDVSKLETLK 218
+ GL+++ GS+L K P LHLHC+EM +PN+++ + + + K L+
Sbjct: 359 KLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGEWHENGAPWAKEKPNLLR 418
Query: 219 LVAPLPSHMQRSWDVLNS 236
VAP+P HM+ SW++++S
Sbjct: 419 FVAPMPPHMKISWNIMSS 436
>gi|297839759|ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
lyrata]
gi|297333602|gb|EFH64020.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 137/200 (68%), Gaps = 9/200 (4%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ + ++Q A+T Y+V+ P +G
Sbjct: 278 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQEAITEYRVLGPMING 337
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+WL+L P+T RKHQLRVHCAE LGT IVGDYKYGW H++WKQ D+ + + P
Sbjct: 338 CSWLELRPITSRKHQLRVHCAEALGTSIVGDYKYGWFVHKRWKQMPQVDIEPTTGK--PY 395
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ------LSSGCDVSKLET 216
+ GLD++ GS+L K P LHLHC+EM LPN+++ + + L +G + K +
Sbjct: 396 KLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQQETEPLRTGI-IDKPDL 454
Query: 217 LKLVAPLPSHMQRSWDVLNS 236
L+ VA +PSHM+ SW++++S
Sbjct: 455 LRFVASMPSHMKISWNLMSS 474
>gi|225443375|ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 152/249 (61%), Gaps = 37/249 (14%)
Query: 18 SSGIITVERV---------MYKDNDNEKRILQRW----------YWALVVGTPRCSKGVI 58
SSG++ + R ++ D + K + + W YWALV+G+P+ +GVI
Sbjct: 235 SSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVI 294
Query: 59 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 118
APL KV++D+GK++R+ + N + ++Q A+T Y+V+ P +G +W++L P T RKHQL
Sbjct: 295 HAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQL 354
Query: 119 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 178
RVHCAE LGTPIVGDYKYGW HR+WKQ DL + + P + GLD++ GS+L
Sbjct: 355 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGK--PYKMRRPEGLDVQKGSVL 412
Query: 179 EKQPRLHLHCKEMTLPNVSQAI-----------QKVQLSSGCDVSKLETLKLVAPLPSHM 227
K P LHLHC+E+ LPN+++ + Q +LS D+ L+ VA +P+HM
Sbjct: 413 SKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDI-----LRFVASMPNHM 467
Query: 228 QRSWDVLNS 236
+ SW++++S
Sbjct: 468 KISWNLMSS 476
>gi|297735761|emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 152/249 (61%), Gaps = 37/249 (14%)
Query: 18 SSGIITVERV---------MYKDNDNEKRILQRW----------YWALVVGTPRCSKGVI 58
SSG++ + R ++ D + K + + W YWALV+G+P+ +GVI
Sbjct: 237 SSGLLLMGRTKESVAHLHWLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVI 296
Query: 59 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 118
APL KV++D+GK++R+ + N + ++Q A+T Y+V+ P +G +W++L P T RKHQL
Sbjct: 297 HAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQL 356
Query: 119 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 178
RVHCAE LGTPIVGDYKYGW HR+WKQ DL + + P + GLD++ GS+L
Sbjct: 357 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTGK--PYKMRRPEGLDVQKGSVL 414
Query: 179 EKQPRLHLHCKEMTLPNVSQAI-----------QKVQLSSGCDVSKLETLKLVAPLPSHM 227
K P LHLHC+E+ LPN+++ + Q +LS D+ L+ VA +P+HM
Sbjct: 415 SKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLKPDI-----LRFVASMPNHM 469
Query: 228 QRSWDVLNS 236
+ SW++++S
Sbjct: 470 KISWNLMSS 478
>gi|255571790|ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223533842|gb|EEF35573.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 468
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 142/210 (67%), Gaps = 9/210 (4%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
ND K QR YWALV+G+P+ +G+I APL KV++++GK++R+ + + + ++Q A+T
Sbjct: 260 NDACKATYQR-YWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEASQEALT 318
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y+V+ P +G +W++L PLT RKHQLRVHCAE LGTPIVGDYKYGW H++WKQ D
Sbjct: 319 EYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWKQMPRVD 378
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSS---- 207
+ S + P + GLD++ GS+L K P LHLHC+E LPN+++ + + S
Sbjct: 379 IEPFSGK--PYKLRRPAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNEKSENIH 436
Query: 208 -GCDVSKLETLKLVAPLPSHMQRSWDVLNS 236
D +K + L+ VA +P+HM+ SW++++S
Sbjct: 437 PALD-AKPDLLRFVASMPTHMKISWNLMSS 465
>gi|3834304|gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
surA-hepA intergenic region yab0 from Escherichia coli
genome gb|AE000116, and to hypothetical YABO family
PF|00849 [Arabidopsis thaliana]
Length = 491
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 15/206 (7%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV+G+P+ +G+ISAPL KV++D+GK+DR+ + ++Q A+T Y+V+ P +G
Sbjct: 286 YWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKING 345
Query: 103 YTWLKLSPLTGRKH------QLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+W++L P+T RKH QLRVHCAE LGTPIVGDYKYGW H++WKQ D+ +
Sbjct: 346 CSWVELRPITSRKHQPPSKKQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTT 405
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ------LSSGCD 210
+ P + GLD++ GS+L K P LHLHC+EM LPN+++ + + L +G
Sbjct: 406 GK--PYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGI- 462
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLNS 236
+ K + L+ VA +PSHM+ SW++++S
Sbjct: 463 IDKPDLLRFVASMPSHMKISWNLMSS 488
>gi|356562211|ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
max]
Length = 554
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 150/242 (61%), Gaps = 25/242 (10%)
Query: 18 SSGIITVERV---------MYKDNDNEKRILQRW----------YWALVVGTPRCSKGVI 58
SSGI+ + R ++ + +N K + W YWALV+GTP+ +G+I
Sbjct: 312 SSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGII 371
Query: 59 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 118
APL KV++++GK++RI + ++ + Q AVT Y+V+ P +G +W++L PLT RKHQL
Sbjct: 372 HAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQL 431
Query: 119 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 178
RVHCAE LGTPIVGDYKYGW H +WKQ D+ + + P + GLD++ GS+L
Sbjct: 432 RVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGK--PYKLRRPEGLDVQKGSVL 489
Query: 179 EKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL----ETLKLVAPLPSHMQRSWDVL 234
K P LHLHC+E+ LPN+ + + + SS + L + L+ VA +PSHM+ SW+++
Sbjct: 490 SKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLM 549
Query: 235 NS 236
+S
Sbjct: 550 SS 551
>gi|414884642|tpg|DAA60656.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 503
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 122/174 (70%), Gaps = 4/174 (2%)
Query: 64 KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA 123
+VV+ +G+S+R+TV S Q A+T Y+VI+ GYTWL+L P TGRKHQLRVHCA
Sbjct: 330 EVVLQDGRSERLTVCAGSNTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCA 389
Query: 124 EVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPR 183
EVLGTPIVGDYKYG Q H+ W P + + ++E+ K++ L FGL L GS+ E+QP+
Sbjct: 390 EVLGTPIVGDYKYGRQAHQNWM---PLPMPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQ 446
Query: 184 LHLHCKEMTLPNVSQAIQKVQLSSGC-DVSKLETLKLVAPLPSHMQRSWDVLNS 236
LHLHCK+M LP++S A+Q+++ S D S LE L VAPLP HMQ SW +L S
Sbjct: 447 LHLHCKQMILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPLHMQLSWKILLS 500
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGK 64
D +++LQR Y ALV+G PR KG++SAPL K
Sbjct: 235 GDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAK 267
>gi|302806002|ref|XP_002984751.1| hypothetical protein SELMODRAFT_121195 [Selaginella moellendorffii]
gi|300147337|gb|EFJ14001.1| hypothetical protein SELMODRAFT_121195 [Selaginella moellendorffii]
Length = 355
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 136/229 (59%), Gaps = 17/229 (7%)
Query: 8 SHVYEKCIAVSSGIITVERVMYKDNDNEKRI---LQRWYWALVVGTPRCSKGVISAPLGK 64
YE + + S + + + +M + + L R Y ALV+G+P KG ISAPL K
Sbjct: 101 GRTYESTVKIQSFLCSKDNLMPSVITTQGSVGKGLDRKYIALVIGSPTADKGFISAPLLK 160
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
+V+++GKSDR+ + + + +A A+T YQV+K S G TWL+L PLTGRKHQLRVHCA+
Sbjct: 161 MVLEDGKSDRVLIAADPKSENAIPAITEYQVLKRSVLGCTWLQLRPLTGRKHQLRVHCAQ 220
Query: 125 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 184
LG PIVGD KYG+ TH+KW ++ N P++ + +GS++ K P L
Sbjct: 221 GLGLPIVGDMKYGFNTHKKWMA------ERNMNTVDPQDIKARNKM---AGSVVSKNPLL 271
Query: 185 HLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDV 233
HLH +E+T+P + + V G D E ++ VAPLP+HM+ SW+
Sbjct: 272 HLHSRELTIPRLRKKPGAVDF--GLDP---ERMRFVAPLPTHMESSWEA 315
>gi|302808237|ref|XP_002985813.1| hypothetical protein SELMODRAFT_123269 [Selaginella moellendorffii]
gi|300146320|gb|EFJ12990.1| hypothetical protein SELMODRAFT_123269 [Selaginella moellendorffii]
Length = 355
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 14/195 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L R Y ALV+G+P KG ISAPL K+V+++GKSDR+ + + + +A A+T YQV+K
Sbjct: 135 LDRKYIALVIGSPTADKGFISAPLLKMVLEDGKSDRVLIAADPKSENAIPAITEYQVLKR 194
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S G TWL+L PLTGRKHQLRVHCA+ LG PIVGD KYG+ TH+KW ++ N
Sbjct: 195 SVLGCTWLQLRPLTGRKHQLRVHCAQGLGLPIVGDMKYGFNTHKKWMA------ERNMNT 248
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLK 218
P++ + +GS++ K P LHLH +E+T+P + + V G D E ++
Sbjct: 249 VDPQDIKARNKM---AGSVVSKNPLLHLHSRELTIPRLRKKPGAVDF--GLDP---ERMR 300
Query: 219 LVAPLPSHMQRSWDV 233
VAPLP+HM+ SW+
Sbjct: 301 FVAPLPTHMESSWEA 315
>gi|168014236|ref|XP_001759658.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689197|gb|EDQ75570.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 128/202 (63%), Gaps = 21/202 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV+G P +G ISAPL KVV D+GK D++ VV+ +AQ A+T Y+V+ S
Sbjct: 85 RCYLALVIGVPEKKEGRISAPLAKVVSDSGKLDKMRVVHGSH-PNAQEAITDYKVLGSSL 143
Query: 101 H-GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G +WL+L PLTGRKHQ+RVHCAEVLG PIVGDYKYGW+ R W P+D ++D+
Sbjct: 144 FAGCSWLELRPLTGRKHQIRVHCAEVLGMPIVGDYKYGWRALRLWP---PTDRTEDTKSS 200
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI-----QKVQLSSGCDVSK- 213
+ GL ESG + +P LHLHC+++ LP+V+QA ++ +G VS
Sbjct: 201 V-------LGLR-ESGHVWSSKPYLHLHCRQLILPDVAQAFKSQSRERSSAQTGARVSGS 252
Query: 214 --LETLKLVAPLPSHMQRSWDV 233
E L+++APLP HM SW++
Sbjct: 253 QFAEPLEIIAPLPPHMVVSWNM 274
>gi|414884643|tpg|DAA60657.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 549
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 50/220 (22%)
Query: 64 KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCH---------------------- 101
+VV+ +G+S+R+TV S Q A+T Y+VI+
Sbjct: 330 EVVLQDGRSERLTVCAGSNTASVQDALTEYRVIESFPQDIKSDVDRNKFVQVMGVGIGSV 389
Query: 102 ------------------------GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYTWL+L P TGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 390 SSKICGAVKLLLVKSTTICLLMILGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYG 449
Query: 138 WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 197
Q H+ W P + + ++E+ K++ L FGL L GS+ E+QP+LHLHCK+M LP++S
Sbjct: 450 RQAHQNWM---PLPMPQTIDKEMLKKRKLPFGLTLGGGSVAEQQPQLHLHCKQMILPDIS 506
Query: 198 QAIQKVQLSSGC-DVSKLETLKLVAPLPSHMQRSWDVLNS 236
A+Q+++ S D S LE L VAPLP HMQ SW +L S
Sbjct: 507 AAMQQLRSSDADHDFSDLEKLSFVAPLPLHMQLSWKILLS 546
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGK 64
D +++LQR Y ALV+G PR KG++SAPL K
Sbjct: 235 GDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAK 267
>gi|224129476|ref|XP_002328726.1| predicted protein [Populus trichocarpa]
gi|222839024|gb|EEE77375.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
V++D+GK++R+ + + + ++ AVT Y+V+ P+ +G +W++L PLT RKHQLRVHCAE
Sbjct: 1 VLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAE 60
Query: 125 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 184
LGTPIVGDYKYGW HR+WKQ D+ S + P + G+D++ GS+L K P L
Sbjct: 61 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGK--PYKLRWPEGVDIQKGSVLAKVPLL 118
Query: 185 HLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET----LKLVAPLPSHMQRSWDVLNS 236
HLHC+E+ LPN+++ + + S L T L+ VA +PSHM+ SW++++S
Sbjct: 119 HLHCRELVLPNIAKFLDVLDGKSENVHPALSTRPDLLRFVASMPSHMKISWNLMSS 174
>gi|356554056|ref|XP_003545365.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 3,
mitochondrial-like [Glycine max]
Length = 228
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 38/222 (17%)
Query: 45 ALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYT 104
ALV+GTP+ +G+I APL KV++++GK+ R+ + ++ + Q AVT ++V+ P +G +
Sbjct: 12 ALVIGTPKEKEGIIHAPLSKVLLNDGKTXRMILAHHSSVEPCQGAVTEHRVLGPKINGCS 71
Query: 105 WLKLSPLTGR--------------------------KHQLRVHCAEVLGTPIVGDYKYGW 138
W++L PLTG + LRVHCAE LGTPIVGDYKYGW
Sbjct: 72 WVELCPLTGSIRLSLEYVVESPTGGGSGLSFCSCKARTLLRVHCAEALGTPIVGDYKYGW 131
Query: 139 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 198
H +WKQ D+ + + P+ GLD++ GS+L K P LHLHC+E+ LPN+++
Sbjct: 132 FVHSRWKQMPRVDIEPTTGK--PE------GLDVQKGSVLSKVPLLHLHCRELVLPNIAK 183
Query: 199 AIQKVQLSSGCDVSKL----ETLKLVAPLPSHMQRSWDVLNS 236
+ + SS + L + L+ VA +PSHM+ SW++++S
Sbjct: 184 FLHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSS 225
>gi|162148058|ref|YP_001602519.1| ribosomal large subunit pseudouridine synthase A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542674|ref|YP_002274903.1| RluA family pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786635|emb|CAP56217.1| putative ribosomal large subunit pseudouridine synthase A
[Gluconacetobacter diazotrophicus PAl 5]
gi|209530351|gb|ACI50288.1| pseudouridine synthase, RluA family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 325
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 92/199 (46%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P + GVI PL ++ G +TVV + + A HA++ Y+V+
Sbjct: 169 RDVRKTYWAIVVGRPSPASGVIDQPLARLGAGPGA---LTVVASRKDADAAHALSEYEVL 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL LSPLTGR HQLRVHC E LGTPI+GD KYG T HP
Sbjct: 226 DAAGRKLSWLALSPLTGRTHQLRVHC-EALGTPILGDPKYGGDT------AHPEGFVD-- 276
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
RLHLH + + LP+ +
Sbjct: 277 --------------------------RLHLHARTLDLPHPAGG----------------R 294
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A LPSHM+ ++ L
Sbjct: 295 LVVSADLPSHMRETFRQLG 313
>gi|281204012|gb|EFA78208.1| Probable ribosomal large subunit pseudouridine synthase C protein
[Polysphondylium pallidum PN500]
Length = 702
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 95/198 (47%), Gaps = 52/198 (26%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWAL+ TP +G I APL KVV D + + + + A+ A+T Y+V++
Sbjct: 547 IRKTYWALLTSTPNPKEGRIRAPLKKVVQD---GEEMVIATKETGDGAKLAITEYKVVES 603
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S +++ L P TGR HQLRVHCA +L +PIVGD KYG
Sbjct: 604 SLTNASFVSLWPETGRTHQLRVHCASILSSPIVGDKKYG--------------------- 642
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGCDVSKLET 216
K ++ F S+L K+ LHLH + + P ++ I
Sbjct: 643 ---KNDSVAF------QSVLGKKIPLHLHARRVEFFHPETNKKID--------------- 678
Query: 217 LKLVAPLPSHMQRSWDVL 234
+VAPLP +++ SWD+L
Sbjct: 679 --VVAPLPKNLENSWDML 694
>gi|328865280|gb|EGG13666.1| putative ribosomal large subunit pseudouridine synthase C protein
[Dictyostelium fasciculatum]
Length = 720
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 46/194 (23%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
+ YWAL+ TP +G I APL K+V +NG+ V + A+ A+T Y+VI+ S
Sbjct: 560 KTYWALLTSTPNPREGRIRAPLQKIV-ENGQEK--VVATKETGNGAKLAITEYRVIENSM 616
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEI 160
+++ L P TGR HQLRVHCA +LG+PI+GD KYG
Sbjct: 617 ADTSFVALWPETGRTHQLRVHCASILGSPIIGDVKYGG---------------------- 654
Query: 161 PKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLV 220
K+ T F ++ +K LHLH + +VQ + +KL + ++
Sbjct: 655 -KKSTAPF------ENVFDKNIPLHLHAR------------RVQFYHPINTNKL--VDVI 693
Query: 221 APLPSHMQRSWDVL 234
APLP +Q SW +L
Sbjct: 694 APLPPTLQDSWSIL 707
>gi|381166027|ref|ZP_09875245.1| Pseudouridine synthase [Phaeospirillum molischianum DSM 120]
gi|380684759|emb|CCG40057.1| Pseudouridine synthase [Phaeospirillum molischianum DSM 120]
Length = 331
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 56/202 (27%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS-DRITVVNNDQIMSAQHAVTRY 93
+ R Q+ YWALV G P+ +G I APLGK+ GK +++ V D +HAVT Y
Sbjct: 169 KSRSAQKCYWALVAGVPKLRQGRIDAPLGKL---GGKGVEKMGVDEED----GRHAVTYY 221
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
+++ + WL++ P TGR HQLR HC +LGTPI+GD KYG
Sbjct: 222 RIVDSALKRAAWLEMEPRTGRTHQLRAHCL-LLGTPILGDGKYG---------------G 265
Query: 154 KDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSK 213
KD+ E FGL +LHLH + + LP+
Sbjct: 266 KDAMIE-------GFGLSR----------KLHLHARALRLPHPRTG-------------- 294
Query: 214 LETLKLVAPLPSHMQRSWDVLN 235
+ L++VAPLP+H + +D+
Sbjct: 295 -KRLEVVAPLPAHFKTGFDLFG 315
>gi|163760834|ref|ZP_02167913.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
gi|162281878|gb|EDQ32170.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
Length = 329
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 51/200 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G PR +G IS L K D+G DR+ V + + A HAV+ Y++
Sbjct: 170 ERTTKKTYWALVTGVPRDREGKISTWLVKEATDDG--DRMRVAKHGEP-GADHAVSYYRI 226
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
I+ + WL+L P TGR HQLRVHC LG PI+GD KY D
Sbjct: 227 IEKAAQNLCWLELEPYTGRTHQLRVHCLH-LGHPILGDPKY---------------YDHD 270
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E P G + Q RLHL + +++P+
Sbjct: 271 KNREFP-------------GGM---QKRLHLLARHISVPHPDGG---------------- 298
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
L + APLP HM +SW++L
Sbjct: 299 RLSVTAPLPPHMVQSWNLLG 318
>gi|398828315|ref|ZP_10586516.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398218350|gb|EJN04860.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 328
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 96/200 (48%), Gaps = 51/200 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G PR + I+ L K ++G DR+ VV + + S HA++ Y+V
Sbjct: 170 ERETKKTYWALVKGIPRKREDKIATWLAKEATEDG--DRMRVVPHGEPDS-DHAISYYRV 226
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
I+ + TWL++ P TGR HQLRVH A + G PI+GD KY D
Sbjct: 227 IESAGQVLTWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY---------------FEAD 270
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
+N P G I Q RLHLH + + +PN S I
Sbjct: 271 TNWSFP-------------GGI---QNRLHLHARRIRIPNPSGGI--------------- 299
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM ++W++L
Sbjct: 300 -IDVTAPLPPHMVQTWNLLG 318
>gi|239831992|ref|ZP_04680321.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|444308588|ref|ZP_21144233.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
gi|239824259|gb|EEQ95827.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|443488171|gb|ELT50928.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
Length = 326
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 101/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTAAFRERDTKKT-----YWALVKGVPRKREDKISTWLVKDQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + TWL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLTWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|329114604|ref|ZP_08243363.1| Ribosomal large subunit pseudouridine synthase C [Acetobacter
pomorum DM001]
gi|326696084|gb|EGE47766.1| Ribosomal large subunit pseudouridine synthase C [Acetobacter
pomorum DM001]
Length = 328
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P G I PL ++ G ITV + + AQ A + Y+V+
Sbjct: 168 RDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQFARSVYEVL 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG HPS +
Sbjct: 225 DSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA------AHPSGFTD-- 275
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
RLHLH + + +P+ +
Sbjct: 276 --------------------------RLHLHARMLDMPHPAGG----------------R 293
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A LP HM+ ++ L
Sbjct: 294 LTVSAELPPHMRETFRTLG 312
>gi|421849506|ref|ZP_16282485.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
gi|371459693|dbj|GAB27688.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
Length = 328
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P G I PL ++ G ITV + + AQ A + Y+V+
Sbjct: 168 RDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVL 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG HPS +
Sbjct: 225 DSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA------AHPSGFTD-- 275
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
RLHLH + + +P+ +
Sbjct: 276 --------------------------RLHLHARMLDMPHPAGG----------------R 293
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A LP HM+ ++ L
Sbjct: 294 LTVSAELPPHMRETFRTLG 312
>gi|421852911|ref|ZP_16285594.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371478910|dbj|GAB30797.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 328
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P G I PL ++ G ITV + + AQ A + Y+V+
Sbjct: 168 RDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVL 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG HPS +
Sbjct: 225 DSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA------AHPSGFTD-- 275
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
RLHLH + + +P+ +
Sbjct: 276 --------------------------RLHLHARMLDMPHPAGG----------------R 293
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A LP HM+ ++ L
Sbjct: 294 LTVSAELPPHMRETFRTLG 312
>gi|258542797|ref|YP_003188230.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|384042718|ref|YP_005481462.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
gi|384051235|ref|YP_005478298.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|384054343|ref|YP_005487437.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|384057577|ref|YP_005490244.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|384060218|ref|YP_005499346.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|384063510|ref|YP_005484152.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|384119520|ref|YP_005502144.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633875|dbj|BAH99850.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|256636934|dbj|BAI02903.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|256639987|dbj|BAI05949.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|256643043|dbj|BAI08998.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|256646098|dbj|BAI12046.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|256649151|dbj|BAI15092.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|256652138|dbj|BAI18072.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655195|dbj|BAI21122.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
Length = 328
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P G I PL ++ G ITV + + AQ A + Y+V+
Sbjct: 168 RDVKKIYWAVVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVL 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++WL+LSPLTGR HQLRVHC E LGTPI+GD KYG HPS +
Sbjct: 225 DSAARKFSWLELSPLTGRTHQLRVHC-ESLGTPILGDPKYGGAA------AHPSGFTD-- 275
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
RLHLH + + +P+ +
Sbjct: 276 --------------------------RLHLHARMLDMPHPAGG----------------R 293
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A LP HM+ ++ L
Sbjct: 294 LTVSAELPPHMRETFRTLG 312
>gi|115477922|ref|NP_001062556.1| Os09g0103500 [Oryza sativa Japonica Group]
gi|75117672|sp|Q69K07.1|PUS4_ORYSJ RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|50725212|dbj|BAD34146.1| ribosomal large subunit pseudouridine synthase C-like [Oryza sativa
Japonica Group]
gi|51091882|dbj|BAD36694.1| ribosomal large subunit pseudouridine synthase C-like [Oryza sativa
Japonica Group]
gi|113630789|dbj|BAF24470.1| Os09g0103500 [Oryza sativa Japonica Group]
Length = 448
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 61/85 (71%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D + +LQR Y ALV+GTPR KG++SAPL K+++ +GKS+R+T+ + S Q A+T
Sbjct: 261 DGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTE 320
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQ 117
Y+VI+ GYTWL+L P TGRKHQ
Sbjct: 321 YRVIESCPQGYTWLELFPRTGRKHQ 345
>gi|153009413|ref|YP_001370628.1| RluA family pseudouridine synthase [Ochrobactrum anthropi ATCC
49188]
gi|404319116|ref|ZP_10967049.1| RluA family pseudouridine synthase [Ochrobactrum anthropi CTS-325]
gi|151561301|gb|ABS14799.1| pseudouridine synthase, RluA family [Ochrobactrum anthropi ATCC
49188]
Length = 326
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 101/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L + +G D
Sbjct: 153 VVARTRGAAQALTTAFRERDTKKT-----YWALVKGVPRKREDKISTWLVREQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + TWL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLTWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S T+ + APLP HM +SW++L
Sbjct: 293 PNPSGG----------------TIDVTAPLPPHMVQSWNLLG 318
>gi|357030713|ref|ZP_09092657.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
morbifer G707]
gi|356415407|gb|EHH69050.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
morbifer G707]
Length = 329
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 59/221 (26%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
IA + G+ ++ D +Q+ YWA+VVG P + G+I PL K+ G +
Sbjct: 149 IARTPGVAAKLAAAFRGRD-----VQKTYWAVVVGRPSPASGIIDQPLAKI--GAGGASL 201
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
+ + D+ A A + Y+ + + ++WLKLSPLTGR HQLRVHC E +GTPI+GD
Sbjct: 202 VIAASRDE-EDAASAKSEYETLDAAGKKFSWLKLSPLTGRTHQLRVHC-ESIGTPILGDP 259
Query: 135 KYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
+YG K HP +D RLHLH +++ +P
Sbjct: 260 RYG------GKAAHPDGF-----------------ID-----------RLHLHARQLDIP 285
Query: 195 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + L + AP P HM+ ++ L
Sbjct: 286 HPAGG----------------RLIVTAPPPPHMRETFRTLG 310
>gi|407778993|ref|ZP_11126253.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
pacificus pht-3B]
gi|407299277|gb|EKF18409.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
pacificus pht-3B]
Length = 328
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 102/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P+ +G IS L K +G D
Sbjct: 148 TSGVLVVARTRQAAMRLAEAFRARETKKTYWALVKGVPKQREGRISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ V + + S HAV+ Y++I+ + +WL++ P TGR HQLRVH A + G PI+GD
Sbjct: 206 RMRVTKHGEPDS-DHAVSNYRLIEQAGMTLSWLEMEPYTGRTHQLRVHAAHI-GCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P GL Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFPG------GL----------QNRLHLHARRIVI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ Q + + APLP HM++SW++L
Sbjct: 293 PHPDQG----------------RIDVTAPLPPHMRQSWNLLG 318
>gi|304391488|ref|ZP_07373430.1| rRNA pseudouridylate synthase C [Ahrensia sp. R2A130]
gi|303295717|gb|EFL90075.1| rRNA pseudouridylate synthase C [Ahrensia sp. R2A130]
Length = 338
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 96/199 (48%), Gaps = 50/199 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R Q+ YWALV G PR +G IS L K ++G DR+ V + + A HAV+ Y+V
Sbjct: 173 QRTTQKTYWALVRGIPRQKEGRISTYLVKEQTEDG--DRMRVAKHGE-RHADHAVSFYRV 229
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
I + +W++LSP TGR HQLRVH A+ +G PI+GD KY
Sbjct: 230 IDSNPRTVSWVELSPHTGRTHQLRVH-ADHIGHPIIGDNKY----------------FST 272
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E+P G I Q RLHLH + + +P+ +
Sbjct: 273 ENWEMP-------------GGI---QKRLHLHARRIRIPHPDE--------------NQP 302
Query: 216 TLKLVAPLPSHMQRSWDVL 234
TL + APLP HM +SW++
Sbjct: 303 TLDVTAPLPPHMVQSWNLF 321
>gi|390450950|ref|ZP_10236534.1| RluA family pseudouridine synthase [Nitratireductor aquibiodomus
RA22]
gi|389661712|gb|EIM73311.1| RluA family pseudouridine synthase [Nitratireductor aquibiodomus
RA22]
Length = 328
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P + IS L K +G D
Sbjct: 148 TSGVLVVARTRQAAMRLAEAFRARDTKKTYWALVKGVPNRDEARISTWLAKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ VV + + S HAV+ Y+V++ + +WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 RMRVVKHGEPDS-DHAVSNYRVVERAGSALSWLEMEPYTGRTHQLRVHAA-YIGCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIVI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + APLP HM++SW++L
Sbjct: 293 PHPGGG----------------KIDVTAPLPPHMRQSWNLLG 318
>gi|52430461|ref|YP_089633.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|376280674|ref|YP_005154680.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
VBI22]
gi|384224668|ref|YP_005615832.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|47524242|gb|AAT34905.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|343382848|gb|AEM18340.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|358258273|gb|AEU06008.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
VBI22]
Length = 326
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|261752304|ref|ZP_05996013.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261742057|gb|EEY29983.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
Length = 326
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|265984067|ref|ZP_06096802.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306838360|ref|ZP_07471205.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
gi|306843875|ref|ZP_07476470.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|264662659|gb|EEZ32920.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306275630|gb|EFM57354.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|306406500|gb|EFM62734.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
Length = 326
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|225852505|ref|YP_002732738.1| RluA family pseudouridine synthase [Brucella melitensis ATCC 23457]
gi|256264005|ref|ZP_05466537.1| pseudouridine synthase [Brucella melitensis bv. 2 str. 63/9]
gi|256369422|ref|YP_003106930.1| ribosomal large subunit pseudouridine synthase C [Brucella microti
CCM 4915]
gi|260564005|ref|ZP_05834491.1| pseudouridine synthase [Brucella melitensis bv. 1 str. 16M]
gi|261213987|ref|ZP_05928268.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261218659|ref|ZP_05932940.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261222167|ref|ZP_05936448.1| pseudouridine synthase [Brucella ceti B1/94]
gi|261314272|ref|ZP_05953469.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261317634|ref|ZP_05956831.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261321843|ref|ZP_05961040.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261758188|ref|ZP_06001897.1| pseudouridine synthase [Brucella sp. F5/99]
gi|265988669|ref|ZP_06101226.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|265991083|ref|ZP_06103640.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|265994920|ref|ZP_06107477.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|265998132|ref|ZP_06110689.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|340790618|ref|YP_004756083.1| ribosomal large subunit pseudouridine synthase C [Brucella
pinnipedialis B2/94]
gi|225640870|gb|ACO00784.1| pseudouridine synthase, RluA family protein [Brucella melitensis
ATCC 23457]
gi|255999582|gb|ACU47981.1| ribosomal large subunit pseudouridine synthase C [Brucella microti
CCM 4915]
gi|260154021|gb|EEW89113.1| pseudouridine synthase [Brucella melitensis bv. 1 str. 16M]
gi|260915594|gb|EEX82455.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|260920751|gb|EEX87404.1| pseudouridine synthase [Brucella ceti B1/94]
gi|260923748|gb|EEX90316.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261294533|gb|EEX98029.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261296857|gb|EEY00354.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261303298|gb|EEY06795.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261738172|gb|EEY26168.1| pseudouridine synthase [Brucella sp. F5/99]
gi|262552600|gb|EEZ08590.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|262766033|gb|EEZ11822.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|263001867|gb|EEZ14442.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|263094149|gb|EEZ18071.1| pseudouridine synthase [Brucella melitensis bv. 2 str. 63/9]
gi|264660866|gb|EEZ31127.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|340559077|gb|AEK54315.1| ribosomal large subunit pseudouridine synthase C [Brucella
pinnipedialis B2/94]
Length = 326
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|384211367|ref|YP_005600449.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384408473|ref|YP_005597094.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|384445066|ref|YP_005603785.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|326409020|gb|ADZ66085.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|326538730|gb|ADZ86945.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
gi|349743057|gb|AEQ08600.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 331
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 158 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 210
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 211 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 268
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 269 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 297
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 298 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 323
>gi|17987266|ref|NP_539900.1| ribosomal large subunit pseudouridine synthase C [Brucella
melitensis bv. 1 str. 16M]
gi|225627477|ref|ZP_03785514.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|17982942|gb|AAL52164.1| ribosomal large subunit pseudouridine synthase c [Brucella
melitensis bv. 1 str. 16M]
gi|225617482|gb|EEH14527.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
Length = 343
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 170 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 222
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 223 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 280
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 281 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 309
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 310 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 335
>gi|148560154|ref|YP_001258940.1| ribosomal large subunit pseudouridine synthase C [Brucella ovis
ATCC 25840]
gi|148371411|gb|ABQ61390.1| ribosomal large subunit pseudouridine synthase C [Brucella ovis
ATCC 25840]
Length = 318
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 145 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 197
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 198 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 255
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 256 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 284
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 285 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 310
>gi|46201801|ref|ZP_00054336.2| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 324
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR +G I APL K+ GK+ V+ ++ +HAVT Y+V+
Sbjct: 164 RSARKCYWALVAGVPRYPQGRIDAPLAKL---PGKAGEKMAVDKEE---GKHAVTYYRVV 217
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ WL++ P TGR HQLR HC +LGTPI+GD KYG Q
Sbjct: 218 DSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKYGGQDA--------------- 261
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L G+ + + +LHLH + + LP+ +
Sbjct: 262 ---------------LIEGTGVSR--KLHLHARAVRLPHPRTG---------------KM 289
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L++ APLP H++ S+D
Sbjct: 290 LEVAAPLPPHIKASFDFFG 308
>gi|163843268|ref|YP_001627672.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|163673991|gb|ABY38102.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
Length = 326
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VLARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|357028779|ref|ZP_09090804.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
gi|355537479|gb|EHH06735.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
Length = 326
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P + IS L K +G D
Sbjct: 148 TSGVLVVARTRLAAMKLSEAFRARETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ V + + A HAV+ Y+VI+ + TWL++ P TGR HQLRVH A + G PI+GD
Sbjct: 206 RVRVAAHGE-KGADHAVSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAAHI-GCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N + P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADTNWDFP-------------GGI---QNRLHLHARRIVI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + + + AP+P HM++SW+++
Sbjct: 293 PHPDKGV----------------IDVTAPMPPHMRQSWNLIG 318
>gi|433775466|ref|YP_007305933.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433667481|gb|AGB46557.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 326
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P + IS L K +G D
Sbjct: 148 TSGVLVVARTRLAAMKLSEAFRARETKKTYWALVKGVPPKREDKISTWLIKEATPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ + + + A HAV+ Y++I+ + TWL++ P TGR HQLRVH A + G PI+GD
Sbjct: 206 RVRIAAHGE-KGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAAHI-GCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N + P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADTNWDFP-------------GGI---QNRLHLHARRIII 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + + + AP+P HM++SW+++
Sbjct: 293 PHPDKGV----------------IDVTAPMPPHMRQSWNLIG 318
>gi|306840487|ref|ZP_07473246.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
gi|306289502|gb|EFM60720.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
Length = 284
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 111 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 163
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 164 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 221
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 222 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARHIRI 250
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 251 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 276
>gi|13470583|ref|NP_102152.1| ribosomal large subunit pseudouridine synthase C [Mesorhizobium
loti MAFF303099]
gi|14021325|dbj|BAB47938.1| ribosomal large subunit pseudouridine synthase C [Mesorhizobium
loti MAFF303099]
Length = 326
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P + IS L K ++G D
Sbjct: 148 TSGVLVVARTRLAAMKLSEAFRARETKKTYWALVKGVPPKREDKISTWLIKEPTEDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ V + + A HAV+ Y++I+ + TWL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 RVRVAAHGE-KGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N + P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADTNWDFP-------------GGI---QNRLHLHARRIII 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + + + AP+P HM++SW+++
Sbjct: 293 PHPDKGL----------------IDVTAPMPPHMRQSWNLIG 318
>gi|300023017|ref|YP_003755628.1| pseudouridine synthase [Hyphomicrobium denitrificans ATCC 51888]
gi|299524838|gb|ADJ23307.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
ATCC 51888]
Length = 327
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 51/201 (25%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R + YWALV G P+ +G + A L K +G DR+ + +A HA T Y
Sbjct: 170 QTRSAAKTYWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKARPGEQDAAMHATTHYS 227
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
V+ + H W+ L P+TGR+HQLR H ++G PIVGD KY H
Sbjct: 228 VVDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH------------- 273
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
+P E +EK +LHLH + + +P+
Sbjct: 274 -----MPAEN-------------IEK--KLHLHARRLVIPHPKGG--------------- 298
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+T+ + APLP+HM SWD+L
Sbjct: 299 KTIDVTAPLPAHMLASWDLLG 319
>gi|418937635|ref|ZP_13491253.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
gi|375055679|gb|EHS51921.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
Length = 340
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR IS L K D G
Sbjct: 163 VVAKTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKQSDKISTWLVKDQTDEGDRM 217
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ D A HA++ Y+V++ + H + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 218 RVCKHGED---GADHAISYYRVLETAAHTFAWLEMEPYTGRTHQLRVH-ALYMGHPIIGD 273
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY +D N + P G + Q RLHLH + + +
Sbjct: 274 PKY---------------FDEDHNWDFP-------------GGV---QKRLHLHARHIDI 302
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ LK+ APLP HM ++W++
Sbjct: 303 PHPDGG----------------RLKVTAPLPPHMVQTWNLFG 328
>gi|294852409|ref|ZP_06793082.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
gi|294820998|gb|EFG37997.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
Length = 331
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 158 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 210
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++++ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 211 KMRVCQHGEPDS-DHAVSYYRILEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 268
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 269 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 297
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + ++APLP HM +SW++L
Sbjct: 298 PNPSGGI----------------IDVMAPLPPHMVQSWNLLG 323
>gi|260754735|ref|ZP_05867083.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260757958|ref|ZP_05870306.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260761781|ref|ZP_05874124.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883756|ref|ZP_05895370.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|297248324|ref|ZP_06932042.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 5 str. B3196]
gi|376273272|ref|YP_005151850.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
A13334]
gi|260668276|gb|EEX55216.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260672213|gb|EEX59034.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674843|gb|EEX61664.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260873284|gb|EEX80353.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|297175493|gb|EFH34840.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 5 str. B3196]
gi|363400878|gb|AEW17848.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
A13334]
Length = 331
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 158 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 210
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 211 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 268
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 269 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 297
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 298 PNPSGGI----------------IDVTAPLPLHMVQSWNLLG 323
>gi|237815424|ref|ZP_04594422.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|237790261|gb|EEP64471.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
Length = 343
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 103/227 (45%), Gaps = 65/227 (28%)
Query: 18 SSGIITVERVM---------YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 165 TSGVLVVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTP 219
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G D++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G
Sbjct: 220 DG--DKMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGH 275
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N E P G I Q RLHLH
Sbjct: 276 PIIGDPKY---------------FEADQNWEFP-------------GGI---QKRLHLHA 304
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +PN S I + + APLP HM +SW++L
Sbjct: 305 RRIRIPNPSGGI----------------IDVTAPLPLHMVQSWNLLG 335
>gi|62289923|ref|YP_221716.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 1 str. 9-941]
gi|82699851|ref|YP_414425.1| RNA-binding protein S4 [Brucella melitensis biovar Abortus 2308]
gi|189024165|ref|YP_001934933.1| Pseudouridine synthase [Brucella abortus S19]
gi|260545328|ref|ZP_05821069.1| pseudouridine synthase [Brucella abortus NCTC 8038]
gi|423166894|ref|ZP_17153597.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|423170732|ref|ZP_17157407.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|423173186|ref|ZP_17159857.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|423177527|ref|ZP_17164173.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|423180162|ref|ZP_17166803.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|423183294|ref|ZP_17169931.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|423185766|ref|ZP_17172380.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|423188902|ref|ZP_17175512.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|62196055|gb|AAX74355.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 1 str. 9-941]
gi|82615952|emb|CAJ10975.1| RNA-binding S4:Pseudouridine synthase:Pseudouridine synthase,
Rlu:Pseudouridine synthase, RluD [Brucella melitensis
biovar Abortus 2308]
gi|189019737|gb|ACD72459.1| Pseudouridine synthase [Brucella abortus S19]
gi|260096735|gb|EEW80610.1| pseudouridine synthase [Brucella abortus NCTC 8038]
gi|374539310|gb|EHR10814.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|374543125|gb|EHR14609.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|374543741|gb|EHR15223.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|374548726|gb|EHR20173.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|374549357|gb|EHR20800.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|374550009|gb|EHR21450.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|374558560|gb|EHR29953.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|374559857|gb|EHR31242.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
Length = 326
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPLHMVQSWNLLG 318
>gi|161618953|ref|YP_001592840.1| RluA family pseudouridine synthase [Brucella canis ATCC 23365]
gi|260566460|ref|ZP_05836930.1| pseudouridine synthase [Brucella suis bv. 4 str. 40]
gi|261754961|ref|ZP_05998670.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|161335764|gb|ABX62069.1| pseudouridine synthase, RluA family [Brucella canis ATCC 23365]
gi|260155978|gb|EEW91058.1| pseudouridine synthase [Brucella suis bv. 4 str. 40]
gi|261744714|gb|EEY32640.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
Length = 326
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEVDQNWEFP-------------GGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|376274261|ref|YP_005114700.1| RluA family pseudouridine synthase [Brucella canis HSK A52141]
gi|363402828|gb|AEW13123.1| pseudouridine synthase, RluA family protein [Brucella canis HSK
A52141]
Length = 331
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 158 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 210
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 211 KMRVCQHGEPDS-DHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 268
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E P G I Q RLHLH + + +
Sbjct: 269 PKY---------------FEVDQNWEFP-------------GGI---QKRLHLHARRIRI 297
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 298 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 323
>gi|339018077|ref|ZP_08644220.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter tropicalis NBRC 101654]
gi|338752854|dbj|GAA07524.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter tropicalis NBRC 101654]
Length = 327
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 91/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P G I PL ++ ++ I V + + AQ+A + Y+V+
Sbjct: 169 RDVKKTYWAVVVGRPDPLAGEIDQPLARL---GAGANAIMVAADRKDEDAQYARSTYEVV 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++WL LSPLTGR HQLRVHC E LGTPI+GD KYG T D KD
Sbjct: 226 DAAARKFSWLALSPLTGRTHQLRVHC-ESLGTPILGDPKYGGATAH-------VDGFKD- 276
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
+LHLH +E+ +P+ +
Sbjct: 277 --------------------------QLHLHARELDMPHPAGG----------------R 294
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A LP HM+ ++ L
Sbjct: 295 LVVTAELPPHMRETFRALG 313
>gi|58040098|ref|YP_192062.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans 621H]
gi|58002512|gb|AAW61406.1| Ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans 621H]
Length = 335
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 59/222 (26%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G+ ++ D EK YWA+VVG P G+I PL K+ G +
Sbjct: 148 LIARTPGVAAKLAAAFRGRDVEK-----TYWAVVVGRPSPESGIIDQPLAKI--GAGGAA 200
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ + D+ A A T Y+ + + +WLKLSPLTGR HQLRVH E +GTPI+GD
Sbjct: 201 LVIAASRDE-EDAASAKTEYETLDAAGKKLSWLKLSPLTGRTHQLRVHT-ESIGTPILGD 258
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
+YG K HP +D RLHLH +++ +
Sbjct: 259 PRYG------GKAAHPEGF-----------------ID-----------RLHLHARQLDI 284
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + L + APLP HM+ ++ L
Sbjct: 285 PHPAGG----------------RLIVTAPLPPHMRETFRTLG 310
>gi|452965910|gb|EME70927.1| 23S rRNA pseudouridylate synthase [Magnetospirillum sp. SO-1]
Length = 335
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR +G I APL K+ GK+ V+ + +HAVT Y+V+
Sbjct: 175 RAARKCYWALVAGVPRYPQGRIDAPLAKL---PGKAGEKVAVDKED---GKHAVTYYRVV 228
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ WL++ P TGR HQLR HC +LGTPI+GD KYG
Sbjct: 229 DSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKYGGAAA--------------- 272
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L G+ + + +LHLH + + LP+ +
Sbjct: 273 ---------------LIEGTGVSR--KLHLHARAVRLPHPRTG---------------KP 300
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+++ APLPSH++ S+D
Sbjct: 301 IEISAPLPSHIKASFDFFG 319
>gi|121602476|ref|YP_989029.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760833|ref|ZP_16197646.1| RluA family pseudouridine synthase [Bartonella bacilliformis INS]
gi|120614653|gb|ABM45254.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411174149|gb|EKS44183.1| RluA family pseudouridine synthase [Bartonella bacilliformis INS]
Length = 327
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWALV G PR + IS + K G D++ V + + + A HAV+ Y+++
Sbjct: 171 REMKKIYWALVRGVPRKKQEKISTWMAKETTAQG--DKMRVCEHGE-LDANHAVSYYRIL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH + + G PI+GD KY DS
Sbjct: 228 DTRARALSWLEMEPYTGRTHQLRVHASHI-GHPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G + Q RLHLH + + +P+ S I
Sbjct: 272 NWELP-------------GGM---QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + APLP HM +S+++L
Sbjct: 300 LDITAPLPPHMVQSFNLL 317
>gi|340777611|ref|ZP_08697554.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter aceti NBRC 14818]
Length = 324
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P G I PL ++ G IT+ + AQ A T Y+V+
Sbjct: 168 RDVKKTYWAVVVGRPDPMSGEIDQPLARLGAGPGS---ITIAADRNDEDAQSARTDYEVL 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ ++WL LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 225 DSAARKFSWLGLSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|114704677|ref|ZP_01437585.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
gi|114539462|gb|EAU42582.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
Length = 328
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G T +++ D +K YWA+V G P +G IS L K +G
Sbjct: 155 VVARTRGAATALTKAFRERDTKK-----LYWAVVKGVPAKKEGRISTYLKKEQTPDGDRM 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI ++ A HA++ Y+VI + WL+L P TGR HQLRVH A + G PI+GD
Sbjct: 210 RIARHGDE---GADHALSHYRVIDQVAQNFAWLELEPHTGRTHQLRVHAAHI-GHPILGD 265
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N E P G + Q RLHLH + + +
Sbjct: 266 PKY---------------FEHDTNWEFP-------------GGV---QMRLHLHARRLVI 294
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S + + +APLP HM++++++
Sbjct: 295 PHPSGGM----------------IDQIAPLPQHMRQTFNLFG 320
>gi|319783351|ref|YP_004142827.1| RluA family pseudouridine synthase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169239|gb|ADV12777.1| pseudouridine synthase, RluA family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 326
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P + IS L K +G D
Sbjct: 148 TSGVLVVARTRLAAMKLSEAFRARETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ V + + A HAV+ Y+VI+ + TWL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 RVRVAAHGE-KGADHAVSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPILGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N + P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADTNWDFP-------------GGI---QNRLHLHARRIII 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + + + AP+P HM++SW+++
Sbjct: 293 PHPDKGV----------------IDVTAPMPPHMRQSWNLIG 318
>gi|312114370|ref|YP_004011966.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219499|gb|ADP70867.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 326
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 53/201 (26%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R +Q+ YWA+ G P+ ++G + A L K +G DR+ + AQHA T Y
Sbjct: 171 QTRSVQKIYWAITRGIPKPTQGKVEAALVKASGPDG--DRVRKARPGEQELAQHATTFYS 228
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
VI + + W+ L P+TGR+HQLR H ++LGTPI+GD KYG T
Sbjct: 229 VIDRAAN-MAWVSLKPVTGRQHQLRAHM-DILGTPILGDQKYGDGT-------------- 272
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
EIP E +E+ +LHLH + +TL + KL
Sbjct: 273 ----EIPIEN-------------IER--KLHLHARRLTLKD----------------PKL 297
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+ + APLPSH+ +++++L
Sbjct: 298 GEIDISAPLPSHIAQTFELLG 318
>gi|347761705|ref|YP_004869266.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter xylinus NBRC 3288]
gi|347580675|dbj|BAK84896.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter xylinus NBRC 3288]
Length = 325
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + YWA+VVG P + G+I PL K+ G I+VV A HA++ Y+V+
Sbjct: 169 RDVHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGDPDAVHALSEYEVL 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 226 DAAARKMSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|407976912|ref|ZP_11157807.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
indicus C115]
gi|407427639|gb|EKF40328.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
indicus C115]
Length = 328
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 51/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K +G DR+ V + + S HAV+ Y++I
Sbjct: 171 RDTKKTYWALVKGVPKKPEGRISTWLVKEQTPDG--DRMRVAKHGEPDS-DHAVSNYRLI 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ + +WL++ P TGR HQLRVH A + G PI+GD KY D
Sbjct: 228 EQAATNLSWLEMEPYTGRTHQLRVHAAHI-GCPIIGDPKY---------------FEADQ 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E P GL Q RLHLH + + +P+ D +++
Sbjct: 272 NWEFPG------GL----------QKRLHLHARRIVIPH-------------PDGGRID- 301
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ APLP HM++SW++L
Sbjct: 302 --VTAPLPPHMRQSWNLLG 318
>gi|408380456|ref|ZP_11178040.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
gi|407745669|gb|EKF57201.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
Length = 329
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 97/227 (42%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YW+LV G PR + IS L K D
Sbjct: 148 TSGVLVVARTRGAAQKLTAAFRERDTKK-----IYWSLVKGVPRKHEDKISTWLTKDQTD 202
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
G R+ D A HAVT Y+VI + WL++ P TGR HQLRVH + G
Sbjct: 203 EGDRMRVCRHGED---GADHAVTYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALHI-GH 258
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 259 PIIGDPKY---------------FVDDHNWDFP-------------GGV---QKRLHLHA 287
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + LP+ + LK+ APLP HM ++W++L
Sbjct: 288 RSIDLPHPNGG----------------RLKVTAPLPPHMVQTWNLLG 318
>gi|338739364|ref|YP_004676326.1| pseudouridylate synthase [Hyphomicrobium sp. MC1]
gi|337759927|emb|CCB65758.1| pseudouridylate synthase [Hyphomicrobium sp. MC1]
Length = 331
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 51/201 (25%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R + YWALV G P+ +G + A L K +G DR+ + A HA T Y
Sbjct: 175 QTRSAAKTYWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPGEQDVAMHATTHYS 232
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
VI + H W+ L P+TGR+HQLR H ++G PIVGD KY H
Sbjct: 233 VIDRAAHKTAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH------------- 278
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
+P E ++K +LHLH + + +P+
Sbjct: 279 -----MPAEN-------------IDK--KLHLHARRLVIPHPKGG--------------- 303
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+T+ + APLP HM+R+W++L
Sbjct: 304 KTIDVTAPLPDHMRRTWELLG 324
>gi|410942981|ref|ZP_11374722.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
frateurii NBRC 101659]
Length = 330
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 59/221 (26%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
IA + G+ ++ D + + YWA+VVG P + G+I PL K+
Sbjct: 149 IARTPGVAAKLAAAFRGRD-----VGKTYWAIVVGRPAQASGIIDQPLAKIGAGGAALVV 203
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
+ +SA+ + Y+ I + ++WL LSPLTGR HQLRVHC E LGTPIVGD
Sbjct: 204 AASRGEEDAVSAK---SEYETIDAAGKKFSWLALSPLTGRTHQLRVHC-ESLGTPIVGDP 259
Query: 135 KYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
+YG K HP +D RLHLH +++ +P
Sbjct: 260 RYG------GKAAHPEGF-----------------ID-----------RLHLHARQLDIP 285
Query: 195 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + L + APLP HM+ ++ L
Sbjct: 286 HPAGG----------------RLIVTAPLPPHMRETFRSLG 310
>gi|330993253|ref|ZP_08317189.1| Ribosomal large subunit pseudouridine synthase C [Gluconacetobacter
sp. SXCC-1]
gi|329759655|gb|EGG76163.1| Ribosomal large subunit pseudouridine synthase C [Gluconacetobacter
sp. SXCC-1]
Length = 322
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + YWA+VVG P + G+I PL ++ G I+VV A HA++ Y+V+
Sbjct: 166 RDVHKVYWAVVVGRPSPATGIIDQPLTRLGAGAGA---ISVVAERGDADAVHALSEYEVL 222
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 223 DAAARKMSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 262
>gi|337269049|ref|YP_004613104.1| RluA family pseudouridine synthase [Mesorhizobium opportunistum
WSM2075]
gi|336029359|gb|AEH89010.1| pseudouridine synthase, RluA family [Mesorhizobium opportunistum
WSM2075]
Length = 326
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P + IS L K +G D
Sbjct: 148 TSGVLVVARTRLAAMKLSEAFRARETKKTYWALVKGVPPKREDKISTWLIKEPTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ + + + A HAV+ Y++I+ + TWL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 RVRIAAHGE-KGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N + P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADTNWDFP-------------GGI---QNRLHLHARRIVI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + + AP+P HM++SW+++
Sbjct: 293 PHPDKGF----------------IDVTAPMPPHMRQSWNLIG 318
>gi|349699577|ref|ZP_08901206.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter europaeus LMG 18494]
Length = 325
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + YWA+VVG P + G+I PL K+ G I+VV A HA++ Y+V+
Sbjct: 169 RDVHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGDADAVHALSEYEVL 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 226 DAAGRKLSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|414341387|ref|YP_006982908.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans H24]
gi|411026722|gb|AFV99976.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans H24]
gi|453330666|dbj|GAC87412.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
thailandicus NBRC 3255]
Length = 330
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 59/221 (26%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
IA + G+ ++ D + + YWA+VVG P + G+I PL K+
Sbjct: 149 IARTPGVAAKLAAAFRGRD-----VGKTYWAIVVGRPAQASGIIDQPLAKIGAGGAALVV 203
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
+ +SA+ + Y+ I + ++WL LSPLTGR HQLRVHC E LGTPIVGD
Sbjct: 204 AASRGEEDAVSAK---SEYETIDAAGKKFSWLALSPLTGRTHQLRVHC-ESLGTPIVGDP 259
Query: 135 KYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
+YG K HP +D RLHLH +++ +P
Sbjct: 260 RYG------GKAAHPEGF-----------------ID-----------RLHLHARQLDIP 285
Query: 195 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + L + APLP HM+ ++ L
Sbjct: 286 HPAGG----------------RLIVTAPLPPHMRETFRSLG 310
>gi|349686578|ref|ZP_08897720.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter oboediens 174Bp2]
Length = 325
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + YWA+VVG P + G+I PL K+ G I+VV A HA++ Y+V+
Sbjct: 169 RDVHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGDADAVHALSEYEVL 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +WL LSPLTGR HQLRVHC E LG PI+GD KYG
Sbjct: 226 DAAGRKLSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|330805203|ref|XP_003290575.1| hypothetical protein DICPUDRAFT_81306 [Dictyostelium purpureum]
gi|325079283|gb|EGC32890.1| hypothetical protein DICPUDRAFT_81306 [Dictyostelium purpureum]
Length = 583
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 48/195 (24%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWAL+ G P+ +G I APL KV++ G+ I + A+ A+T Y+VI+
Sbjct: 421 IKKTYWALIAGAPKPREGRIRAPLKKVMI-GGEEKVIPALKIGD--GAKLAITEYKVIQS 477
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S +++ L P TGR HQLRVHCA VL PI+GD KYG +K NE
Sbjct: 478 SLDNQSFVALWPETGRTHQLRVHCASVLNAPIIGDTKYG---------------NKLVNE 522
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGCDVSKLET 216
I KT L+ S S+ +LHLH + + P ++ I
Sbjct: 523 SI---KTF---LNSASSSL-----KLHLHARRIQFIHPFTNKPID--------------- 556
Query: 217 LKLVAPLPSHMQRSW 231
++APLP ++ SW
Sbjct: 557 --IIAPLPPSLKESW 569
>gi|409437486|ref|ZP_11264600.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
gi|408750914|emb|CCM75758.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
Length = 330
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 98/227 (43%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YW+LV G PR + IS L K
Sbjct: 148 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWSLVKGVPRKHEDKISTWLVKEATP 202
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G RI D A HAV+ Y+VI+ + WL++ P TGR HQLRVH + G
Sbjct: 203 DGDRMRIAKHGED---GADHAVSYYRVIETAAQRLAWLEMEPYTGRTHQLRVHALHI-GH 258
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 259 PIIGDPKY---------------FDDDPNWDFP-------------GGV---QKRLHLHA 287
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ S L++ APLP HM ++W++L
Sbjct: 288 RHIDIPHPSGG----------------RLRITAPLPPHMLQTWNLLG 318
>gi|296114939|ref|ZP_06833585.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295978497|gb|EFG85229.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 325
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+ VG P + G++ PL ++ G I VV + A HA++ Y+V+
Sbjct: 169 RDVRKVYWAVTVGRPTPASGIVDQPLTRLGAGAGA---IMVVAGRRDKDAVHALSEYEVL 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +WL LSPLTGR HQLRVHC E LGTPI+GD KYG
Sbjct: 226 DAAGRKLSWLALSPLTGRTHQLRVHC-EALGTPILGDPKYG 265
>gi|296444792|ref|ZP_06886755.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
gi|296257740|gb|EFH04804.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
Length = 365
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 95/213 (44%), Gaps = 54/213 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVIS------APLGKVVVDNGKSDRITVVNNDQIM------ 84
R ++ YWALV G P+ ++G +S A +G S+R + + M
Sbjct: 178 RQAKKIYWALVEGVPKPAQGRVSLYLAKGAAMGDDRPPRPGSERREAADAREKMRVARHG 237
Query: 85 --SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
AQH++T Y +++ + WL + PLTGR HQLR H AE + PI GD KYG HR
Sbjct: 238 DEGAQHSLTYYAIVEKAAPRCAWLSMKPLTGRTHQLRAH-AEAIACPIFGDPKYG---HR 293
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 202
+ +D +P+ GL+ +LHL + + LPN
Sbjct: 294 PEDEVR----RRDPMRAMPE------GLER----------KLHLLARRLILPN------- 326
Query: 203 VQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
K TL + APLP+HMQ SWDV
Sbjct: 327 ---------PKGGTLDVTAPLPAHMQTSWDVFG 350
>gi|110634000|ref|YP_674208.1| ribosomal large subunit pseudouridine synthase C [Chelativorans sp.
BNC1]
gi|110284984|gb|ABG63043.1| ribosomal large subunit pseudouridine synthase C [Chelativorans sp.
BNC1]
Length = 327
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 55/222 (24%)
Query: 18 SSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R R ++ YWAL+ G P+ ++G IS L + +G D
Sbjct: 147 TSGVLVVARTRLAAVKLTESFRARETKKIYWALIKGVPKKAEGRISTWLVRETTPDG--D 204
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ + + + A HAV+ Y++++ + +WL + P TGR HQLRVH A + G PI+GD
Sbjct: 205 RMRIAKHGEP-GADHAVSTYRLVEQAGTALSWLVMEPFTGRMHQLRVHAAHI-GCPIIGD 262
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E+P G I Q RLHLH + + +
Sbjct: 263 PKY---------------FEADQNWELP-------------GGI---QNRLHLHARRIII 291
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ ++ + A +P HMQ+SW++L
Sbjct: 292 PHPDGG----------------SIDVTAEMPPHMQQSWNLLG 317
>gi|15965142|ref|NP_385495.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti 1021]
gi|334315929|ref|YP_004548548.1| RluA family pseudouridine synthase [Sinorhizobium meliloti AK83]
gi|384529100|ref|YP_005713188.1| RluA family pseudouridine synthase [Sinorhizobium meliloti BL225C]
gi|384536620|ref|YP_005720705.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|407720329|ref|YP_006839991.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|418405277|ref|ZP_12978685.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|433613160|ref|YP_007189958.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
gi|15074322|emb|CAC45968.1| Probable ribosomal large subunit pseudouridine synthase C
[Sinorhizobium meliloti 1021]
gi|333811276|gb|AEG03945.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti BL225C]
gi|334094923|gb|AEG52934.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti AK83]
gi|336033512|gb|AEH79444.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|359500766|gb|EHK73420.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|407318561|emb|CCM67165.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|429551350|gb|AGA06359.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
Length = 330
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 98/227 (43%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 150 TSGVLVVARTRGAAQQLTAAFRERDTKKT-----YWALVRGVPRKREDKISTWLVKEPTP 204
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G RI D A HA++ Y++++ + WL++ P TGR HQLRVH A + G
Sbjct: 205 DGDRVRIAKHGED---GADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GH 260
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N P G + Q RLHLH
Sbjct: 261 PIIGDPKY---------------FEADVNWTFP-------------GGM---QNRLHLHA 289
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + LK+ APLP HM +SW++L
Sbjct: 290 RHIDIPHPNGG----------------RLKITAPLPQHMVQSWNLLG 320
>gi|86357851|ref|YP_469743.1| pseudouridylate synthase, ribosomal large subunit C protein
[Rhizobium etli CFN 42]
gi|86281953|gb|ABC91016.1| pseudouridylate synthase, ribosomal large subunit C protein
[Rhizobium etli CFN 42]
Length = 317
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YW+LV G PR + IS L K +G
Sbjct: 139 VIARTRGAAQKLTAAFRERDTKKT-----YWSLVKGVPRKHEDKISTWLVKEPTADGDRM 193
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 194 RIAKHGED---GADHAVSYYRVVETAAQRLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 249
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G I Q RLHLH + + +
Sbjct: 250 PKY---------------FDDDPNWDFP-------------GGI---QKRLHLHARHIDI 278
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM +SW++L
Sbjct: 279 PHPSGG----------------RLRVTAPLPPHMVQSWNLLG 304
>gi|261325093|ref|ZP_05964290.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261301073|gb|EEY04570.1| pseudouridine synthase [Brucella neotomae 5K33]
Length = 326
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 99/222 (44%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VVARTRGAAQALTASFRERDTKKT-----YWALVKGVPRKREDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y++I+ + + WL++ P TGR HQLRVH A +G PI+GD
Sbjct: 206 KMRVCQHGEPDS-NHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N E G I Q RLHLH + + +
Sbjct: 264 PKY---------------FEADQNWEF-------------LGGI---QKRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
PN S I + + APLP HM +SW++L
Sbjct: 293 PNPSGGI----------------IDVTAPLPPHMVQSWNLLG 318
>gi|430003654|emb|CCF19443.1| Pseudouridine synthase [Rhizobium sp.]
Length = 329
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G D
Sbjct: 153 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEQTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ + + + A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 206 RMRIAKHGE-AGADHAVSFYRVLETAAQTMAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FDDDINWPFP-------------GGI---QKRLHLHARHIDI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S LK+ APLP HM +SW++L
Sbjct: 293 PHPSGG----------------RLKVTAPLPPHMVQSWNLLG 318
>gi|424895151|ref|ZP_18318725.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179378|gb|EJC79417.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 330
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLPSHM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPSHMVQTWNLLG 319
>gi|424887740|ref|ZP_18311343.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173289|gb|EJC73333.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 330
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLPSHM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPSHMVQTWNLLG 319
>gi|116252313|ref|YP_768151.1| ribosomal large subunit pseudouridine synthase C [Rhizobium
leguminosarum bv. viciae 3841]
gi|115256961|emb|CAK08055.1| putative ribosomal large subunit pseudouridine synthase C
[Rhizobium leguminosarum bv. viciae 3841]
Length = 330
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLPSHM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPSHMVQTWNLLG 319
>gi|150396240|ref|YP_001326707.1| RluA family pseudouridine synthase [Sinorhizobium medicae WSM419]
gi|150027755|gb|ABR59872.1| pseudouridine synthase, RluA family [Sinorhizobium medicae WSM419]
Length = 330
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS + K +G
Sbjct: 155 VIARTRGAAQQLTAAFRERDTKKT-----YWALVRGVPRKREDKISTWVVKEQTPDGDRV 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD
Sbjct: 210 RIAKHGED---GADHAISFYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGD 265
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N P G + Q RLHLH + + +
Sbjct: 266 PKY---------------FEADVNWTFP-------------GGM---QNRLHLHARHIDI 294
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + LK+ APLP HM +SW++L
Sbjct: 295 PHPNGG----------------RLKVTAPLPQHMMQSWNLLG 320
>gi|326388341|ref|ZP_08209937.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207073|gb|EGD57894.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
nitrogenifigens DSM 19370]
Length = 436
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 96/222 (43%), Gaps = 59/222 (26%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R Y R ++ YWALV+G P + G I PL K G +
Sbjct: 154 TSGVLLIARTPGSAAYFSRHFSGRSAKKIYWALVMGIPEINDGYIDLPLAKQPGTGG--E 211
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V D+ Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD
Sbjct: 212 KMMV---DESGEGQTARTRYRVIDRAGNRAAWVELQPLTGRTHQLRVHMA-AIGHPIVGD 267
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KYG Q SGSI K LHLH + + +
Sbjct: 268 GKYGGQAA------------------------------FLSGSISRK---LHLHARRLLI 294
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + +T+ +VAPLP H S L
Sbjct: 295 PH----------------PEGDTIDVVAPLPEHFAASLAQLG 320
>gi|222086089|ref|YP_002544621.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221723537|gb|ACM26693.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 332
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YW+LV G PR + IS L K
Sbjct: 150 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWSLVKGVPRKHEDKISTWLVKEATA 204
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G RI D A HA+T Y+V++ + WL++ P TGR HQLRVH +G
Sbjct: 205 DGDRMRIAKHGED---GADHAITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGH 260
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 261 PIIGDPKY---------------FDDDHNWDFP-------------GGV---QNRLHLHA 289
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 290 RHIDIPHPNGG----------------RLRITAPLPPHMVQTWNLLG 320
>gi|398380034|ref|ZP_10538152.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397721350|gb|EJK81898.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 317
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YW+LV G PR + IS L K
Sbjct: 135 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWSLVKGVPRKHEDKISTWLVKEATA 189
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G RI D A HA+T Y+V++ + WL++ P TGR HQLRVH +G
Sbjct: 190 DGDRMRIAKHGED---GADHAITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGH 245
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 246 PIIGDPKY---------------FDDDHNWDFP-------------GGV---QNRLHLHA 274
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 275 RHIDIPHPNGG----------------RLRITAPLPPHMVQTWNLLG 305
>gi|402487861|ref|ZP_10834676.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
gi|401813029|gb|EJT05376.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
Length = 329
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 153 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 208 RIARHGED---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 264 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARRIDI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLPSHM ++W++L
Sbjct: 293 PHPSGG----------------RLRVSAPLPSHMVQTWNLLG 318
>gi|359791922|ref|ZP_09294754.1| RluA family pseudouridine synthase [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359251985|gb|EHK55285.1| RluA family pseudouridine synthase [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 328
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 55/222 (24%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R M R ++ YWALV G P+ + IS L K +G D
Sbjct: 148 TSGVLVVARTRLAAMKLAEAFRGRDAKKTYWALVKGVPKKREDKISTWLIKEPTPDG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ V + + A HAV+ Y++++ + +WL++ P TGR HQLRVH A + G PI+GD
Sbjct: 206 RVRVAQHGE-KGADHAVSYYRILEQAGQTMSWLEMEPHTGRTHQLRVHAAHI-GCPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N + P G + Q RLHLH + + +
Sbjct: 264 PKY---------------FEADTNWDFP-------------GGV---QNRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + + + AP+P HM++SW+++
Sbjct: 293 PHPDKGV----------------IDVTAPMPPHMRQSWNLIG 318
>gi|399036575|ref|ZP_10733609.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398065903|gb|EJL57515.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 316
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YW+LV G PR + IS L K +G
Sbjct: 139 VIARTRGAAQKLTAAFRERDTKKT-----YWSLVRGVPRKHEDKISTWLVKEATADGDRM 193
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 194 RVAKHGED---GADHAISYYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 249
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY +D N ++P G I Q RLHLH +++ +
Sbjct: 250 PKY---------------FIEDPNWDVP-------------GGI---QKRLHLHARKIDI 278
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM ++W++L
Sbjct: 279 PHPSGG----------------RLRVSAPLPPHMVQTWNLLG 304
>gi|190891935|ref|YP_001978477.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
etli CIAT 652]
gi|190697214|gb|ACE91299.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CIAT 652]
Length = 330
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEATADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G I Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGI---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|398353276|ref|YP_006398740.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
gi|390128602|gb|AFL51983.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
Length = 330
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D K YW+LV G PR + +S L K +G
Sbjct: 155 VIARTRGAAQQLTAAFRERDTRK-----IYWSLVKGVPRKREDRVSTWLVKEQTPDGDRM 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI +D A HA++ Y++I+ + +WL++ P TGR HQLRVH A + G PI+GD
Sbjct: 210 RIAKHGDD---GADHAISYYRIIEQAGQNLSWLEMEPYTGRTHQLRVHAAHI-GHPIIGD 265
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N P G + Q RLHLH + + +
Sbjct: 266 PKY---------------FDADVNWTFP-------------GGM---QNRLHLHARSIDI 294
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + LK+ APLP HM +SW++L
Sbjct: 295 PHPNGG----------------RLKITAPLPPHMVQSWNLLG 320
>gi|357384683|ref|YP_004899407.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
gi|351593320|gb|AEQ51657.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
Length = 333
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 91/199 (45%), Gaps = 50/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+ +G P +G IS L + +G +++ VV N AQH+V+ Y V
Sbjct: 168 RSARKIYWAITIGVPHPRQGRISCFLARQSTQDG--EQMVVVENG-TEGAQHSVSYYSVT 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ + + + W+ L P+TGR HQLRVH E LGTPI+ D +Y T W P +L K
Sbjct: 225 ESAANQFAWVTLKPVTGRTHQLRVHMME-LGTPILDDPRY--NTLENWNFERPEELGKG- 280
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
LHLH + + +P L SG +
Sbjct: 281 ---------------------------LHLHARRLAIP----------LRSG------KR 297
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + APLP HM+ S++ L
Sbjct: 298 LDITAPLPPHMKASFETLG 316
>gi|418056160|ref|ZP_12694213.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
gi|353209379|gb|EHB74782.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
Length = 312
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 51/201 (25%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R + YWALV G P+ +G + A L K +G DR+ + A HA T Y
Sbjct: 156 QTRSAAKTYWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPGEQDVAMHATTHYS 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
VI + H W+ L P+TGR+HQLR H ++G PIVGD KY H
Sbjct: 214 VIDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH------------- 259
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
+P E +EK +LHLH + + +P+
Sbjct: 260 -----MPAEN-------------IEK--KLHLHARRLVIPHPKGG--------------- 284
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+ + + APLP+HM SW++L
Sbjct: 285 KIIDVTAPLPAHMAASWELLG 305
>gi|241204807|ref|YP_002975903.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858697|gb|ACS56364.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 330
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP+HM ++W++L
Sbjct: 294 PHPSGG----------------RLRISAPLPAHMVQTWNLLG 319
>gi|296284584|ref|ZP_06862582.1| pseudouridylate synthase [Citromicrobium bathyomarinum JL354]
Length = 388
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 18 SSGIITVERVMYKDNDNEKRILQRW----YWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R KR R YWALVVG P G I APL K G+
Sbjct: 155 TSGVLLIARTPGSAAAFSKRFAGRSAKKVYWALVVGVPEQHVGEIDAPLAKQPGTGGEKM 214
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ Q A TRY+V++ + + WL+L PLTGR HQLRVHCA +G PIVGD
Sbjct: 215 HVDTEGG------QPAKTRYRVVERAGNRAAWLELEPLTGRTHQLRVHCA-AMGHPIVGD 267
Query: 134 YKYGWQ 139
KYG Q
Sbjct: 268 GKYGGQ 273
>gi|209549478|ref|YP_002281395.1| pseudouridine synthase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913830|ref|ZP_18337194.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535234|gb|ACI55169.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392850006|gb|EJB02527.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 329
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 153 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+VI+ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 208 RIAKHGED---GADHAISFYRVIETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 264 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM ++W++L
Sbjct: 293 PHPSGG----------------RLRVSAPLPPHMVQTWNLLG 318
>gi|66808785|ref|XP_638115.1| hypothetical protein DDB_G0285543 [Dictyostelium discoideum AX4]
gi|60466557|gb|EAL64609.1| hypothetical protein DDB_G0285543 [Dictyostelium discoideum AX4]
Length = 718
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 51/198 (25%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWAL+ TP +G I APL KVVV + T+ D A+ A+T Y+V++
Sbjct: 559 IKKTYWALLGSTPTPKEGRIRAPLKKVVVGGFEKVVPTLTTGD---GAKIAITEYKVLES 615
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
S + ++ L P TGR HQLRVHCA VL TPI+GD KYG D DSN
Sbjct: 616 SLTKHCFISLWPETGRTHQLRVHCASVLNTPIIGDPKYG-------------DKESDSNL 662
Query: 159 EIPKEKTLHFGLDLESGSILEKQPRLHLHCK--EMTLPNVSQAIQKVQLSSGCDVSKLET 216
+ +L +LHLH + E P ++ I D+S
Sbjct: 663 K----------------DLLPYPSKLHLHARRIEFIHPFTNKKI---------DIS---- 693
Query: 217 LKLVAPLPSHMQRSWDVL 234
APLP + ++W +
Sbjct: 694 ----APLPRELVQNWKTM 707
>gi|424870801|ref|ZP_18294463.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393166502|gb|EJC66549.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 330
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + L++ APLPSHM ++W++L
Sbjct: 294 PHPTGG----------------RLRVSAPLPSHMVQTWNLLG 319
>gi|367471682|ref|ZP_09471287.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 285]
gi|365276001|emb|CCD83755.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 285]
Length = 468
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 88/199 (44%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D G+ D I V A HAVT Y V+
Sbjct: 307 RSARKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVV 363
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S + W+ L P+TGR HQLR H A + G PIVGD KY F+ + S
Sbjct: 364 EASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----------FNIENWS--- 409
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+ +
Sbjct: 410 ---------LPGGL----------QNRLHLLARRIVIPHPRGGV---------------- 434
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ APLP HM +SW++L
Sbjct: 435 IDATAPLPPHMLQSWNLLG 453
>gi|440226754|ref|YP_007333845.1| ribosomal large subunit pseudouridine synthase C [Rhizobium tropici
CIAT 899]
gi|440038265|gb|AGB71299.1| ribosomal large subunit pseudouridine synthase C [Rhizobium tropici
CIAT 899]
Length = 332
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YW+LV G PR + IS L K
Sbjct: 150 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWSLVKGVPRKHEDKISTWLVKEATA 204
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HA++ Y+V++ + WL++ P TGR HQLRVH +G
Sbjct: 205 DG--DRMRIAKHGE-EGADHAISYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGH 260
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 261 PIIGDPKY---------------FDDDPNWDFP-------------GGV---QKRLHLHA 289
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ S L++ APLP HM ++W++L
Sbjct: 290 RHIDIPHPSGG----------------RLRVTAPLPPHMVQTWNLLG 320
>gi|417104037|ref|ZP_11961267.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CNPAF512]
gi|327191042|gb|EGE58095.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CNPAF512]
Length = 330
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEATADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + W+++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVLETAAQNLAWIEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G I Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGI---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|405382859|ref|ZP_11036635.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397320620|gb|EJJ25052.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 330
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTADGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G I Q +LHLH + + +
Sbjct: 265 PKY---------------YDDDPNWDFP-------------GGI---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM ++W++L
Sbjct: 294 PHPSGG----------------RLRISAPLPPHMVQTWNLLG 319
>gi|146341534|ref|YP_001206582.1| ribosomal large subunit pseudouridine synthase RluC-like protein
[Bradyrhizobium sp. ORS 278]
gi|146194340|emb|CAL78364.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 278]
Length = 458
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 88/199 (44%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D G+ D I V A HAVT Y V+
Sbjct: 297 RSARKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVV 353
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S + W+ L P+TGR HQLR H A + G PIVGD KY F+ + S
Sbjct: 354 EASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----------FNIENWS--- 399
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+ +
Sbjct: 400 ---------LPGGL----------QNRLHLLARRIVIPHPRGGV---------------- 424
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ APLP HM +SW++L
Sbjct: 425 IDATAPLPPHMLQSWNLLG 443
>gi|365891926|ref|ZP_09430286.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. STM 3809]
gi|365332088|emb|CCE02817.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. STM 3809]
Length = 327
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 88/199 (44%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D G+ D I V A HAVT Y V+
Sbjct: 166 RSARKVYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVV 222
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + G PIVGD KY F+ + S
Sbjct: 223 EASATKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----------FNIENWS--- 268
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+ +
Sbjct: 269 ---------LPGGL----------QNRLHLLARRIVIPHPRGGV---------------- 293
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 294 IDVTAPLPPHMLQSWNLLG 312
>gi|118591144|ref|ZP_01548543.1| ribosomal large subunit pseudouridine synthase C [Stappia aggregata
IAM 12614]
gi|118436220|gb|EAV42862.1| ribosomal large subunit pseudouridine synthase C [Stappia aggregata
IAM 12614]
Length = 355
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 101/222 (45%), Gaps = 57/222 (25%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGII V R + K R ++ YWA++ G P+ +G IS L + N +
Sbjct: 167 TSGIILVARTRQAAQELTKAFRHRNTRKIYWAILAGVPKPFQGRISTFLAR----NDGEE 222
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ VV + AQHAV+ Y V + S +W+ + P+TGR HQLR H A + G PI+GD
Sbjct: 223 RMQVVRQGED-EAQHAVSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAHI-GHPIIGD 280
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY N E+P G I Q RLHL + + +
Sbjct: 281 DKY----------------FNIENWELP-------------GGI---QNRLHLLARRIVI 308
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S G T+ + APLP HMQ++W++L
Sbjct: 309 PHPS--------GHG-------TIDVSAPLPPHMQQTWNLLG 335
>gi|424881736|ref|ZP_18305368.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518099|gb|EIW42831.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 330
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEPTVDGDRM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HA++ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 209 RIAKHGED---GADHAISFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G + Q +LHLH + + +
Sbjct: 265 PKY---------------FDDDPNWDFP-------------GGV---QKKLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP+HM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPAHMVQTWNLLG 319
>gi|227821788|ref|YP_002825758.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
gi|227340787|gb|ACP25005.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
Length = 330
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D K YW+LV G PR + IS L K +G
Sbjct: 155 VIARTRGAAQQLTAAFRERDTRK-----IYWSLVKGVPRKREDRISTWLVKEQTPDGDRM 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI +D A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD
Sbjct: 210 RIAKHGDD---GADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGD 265
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N P G I Q RLHLH + + +
Sbjct: 266 PKY---------------FEADVNWTFP-------------GGI---QNRLHLHARCIDI 294
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + LK+ APLP HM +SW++L
Sbjct: 295 PHPNGG----------------RLKVTAPLPPHMVQSWNLLG 320
>gi|420245078|ref|ZP_14748755.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398049440|gb|EJL41860.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 331
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YWALV G PR + IS L K +G
Sbjct: 153 VIARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHEDKISTWLVKEQTPDGDRM 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI D A HAV+ Y+V++ + W+++ P TGR HQLRVH + G PI+GD
Sbjct: 208 RIAKHGED---GADHAVSYYRVLEMAAQTLCWMEMEPYTGRTHQLRVHALHI-GHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G I Q +LHLH + + +
Sbjct: 264 PKY---------------FDDDHNWDFP-------------GGI---QKKLHLHARHIDI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + LK+ APLP HM +SW++L
Sbjct: 293 PHPNGG----------------RLKVTAPLPPHMVQSWNLLG 318
>gi|254500715|ref|ZP_05112866.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
gi|222436786|gb|EEE43465.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
Length = 340
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 99/222 (44%), Gaps = 56/222 (25%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGII V R + K R ++ YW ++ G P+ +G IS L + + + +
Sbjct: 151 TSGIILVARTRQAAQELTKAFRHRNTRKVYWTILAGVPKPHQGRISTFLAR----DEEEE 206
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ VV AQHAV+ Y V + S +W+ + P+TGR HQLR H A + G PI+GD
Sbjct: 207 RMQVVRQGGADDAQHAVSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAHI-GHPIIGD 265
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY N E+P G I Q RLHL + + +
Sbjct: 266 DKY----------------FNIENWELP-------------GGI---QNRLHLLARRIVI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S DVS APLP HMQ++W++L
Sbjct: 294 PHPSG-------HGKIDVS--------APLPPHMQQTWNLLG 320
>gi|365882308|ref|ZP_09421558.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
gi|365289393|emb|CCD94089.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
Length = 332
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 87/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D G+ D I V A HAVT Y V+
Sbjct: 171 RSARKIYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVV 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S + W+ L P+TGR HQLR H A + G PIVGD KY F+ + S
Sbjct: 228 EASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----------FNIENWS--- 273
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+
Sbjct: 274 ---------LPGGL----------QNRLHLLARRIVIPHPRGGF---------------- 298
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ APLP HM +SW++L
Sbjct: 299 IDATAPLPPHMLQSWNLLG 317
>gi|395767190|ref|ZP_10447725.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
gi|395414503|gb|EJF80945.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
Length = 327
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 51/199 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G PR + IS + K V + G D++ V + + + HAV+ Y+V
Sbjct: 170 ERETKKTYWALVRGVPRKKQDKISTWMVKEVTEQG--DKMRVCEHGEP-DSNHAVSYYRV 226
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ +WL++ P TGR HQLRVH A + PI+GD KY D
Sbjct: 227 LDTRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDSKY---------------FFSD 270
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
SN E+P G I Q RLHLH + + +P+ S +
Sbjct: 271 SNWELP-------------GGI---QNRLHLHARRIRIPHPSGGL--------------- 299
Query: 216 TLKLVAPLPSHMQRSWDVL 234
L ++APLP HM +S+++L
Sbjct: 300 -LDVIAPLPPHMLQSFNLL 317
>gi|328543393|ref|YP_004303502.1| pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
gi|326413138|gb|ADZ70201.1| Pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
Length = 334
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 98/222 (44%), Gaps = 57/222 (25%)
Query: 18 SSGIITVERVMYKDNDNEKRILQR----WYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V + + + QR YWAL+ G P+ +G IS L + D G
Sbjct: 151 TSGVLLVAKTRKAAQELTRAFRQRSTRKIYWALLAGVPKPRQGRISTYLAR---DEGSEK 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ D AQHAV+ Y V++ S W+ L P+TGR HQLR H A + G PIVGD
Sbjct: 208 MKVARHGDD--EAQHAVSLYSVVEQSAQKLAWVSLRPVTGRTHQLRAHAAHI-GHPIVGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY F+ N E+P G I Q RLHL + + +
Sbjct: 265 DKY----------FNI------ENWELP-------------GGI---QNRLHLLARRIVI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S T+ + APLP HMQ+SW++L
Sbjct: 293 PHPSGH---------------GTIDVSAPLPPHMQQSWNLLG 319
>gi|148256356|ref|YP_001240941.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
sp. BTAi1]
gi|146408529|gb|ABQ37035.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
sp. BTAi1]
Length = 458
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 88/199 (44%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D G+ D I V A HAVT Y V+
Sbjct: 297 RSARKIYWALVAGVPKPKQGRISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVV 353
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S + W+ L P+TGR HQLR H A + G PIVGD KY F+ + +
Sbjct: 354 EASANKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----------FNIENWA--- 399
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+ +
Sbjct: 400 ---------LPGGL----------QNRLHLLARRIVIPHPRGGV---------------- 424
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ APLP HM +SW++L
Sbjct: 425 IDATAPLPPHMLQSWNLLG 443
>gi|421588806|ref|ZP_16034046.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
sp. Pop5]
gi|403706422|gb|EJZ21688.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
sp. Pop5]
Length = 330
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA + G +++ D +K YW+LV G PR + IS L K +G D
Sbjct: 154 VIARTRGAAQKLTAAFRERDTKKT-----YWSLVRGVPRKHEDKISTWLVKEPTADG--D 206
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ + + + A HAV+ Y+V++ + WL++ P TGR HQLRVH + G PI+GD
Sbjct: 207 RMRIAKHGE-EGADHAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D N + P G I Q RLHLH + + +
Sbjct: 265 PKY---------------FIDDPNWDFP-------------GGI---QKRLHLHARHIDI 293
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S L++ APLP HM ++W++L
Sbjct: 294 PHPSGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|163796887|ref|ZP_02190844.1| Pseudouridine synthase, RluD [alpha proteobacterium BAL199]
gi|159177876|gb|EDP62425.1| Pseudouridine synthase, RluD [alpha proteobacterium BAL199]
Length = 331
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 85/193 (44%), Gaps = 55/193 (28%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALVVG P+ + G I +GK+ G+ I + N + A TRY ++
Sbjct: 179 YWALVVGEPKPNAGSIEGAIGKLPGRAGEKMAIDLENG------KRAFTRYVTVERLGGK 232
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
TW+ L P+TGR HQLRVH AE LGTPI+GD KYG + F
Sbjct: 233 VTWVALFPVTGRTHQLRVHMAE-LGTPILGDGKYGGA-----EAF--------------- 271
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 222
L+ + K LHLH + + +P+ +K ++++AP
Sbjct: 272 ---------LQGEGVSRK---LHLHARAIRIPD----------------AKGRPVEVIAP 303
Query: 223 LPSHMQRSWDVLN 235
L HM RSW
Sbjct: 304 LADHMARSWAFFG 316
>gi|209963759|ref|YP_002296674.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957225|gb|ACI97861.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
Length = 336
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 88/199 (44%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+ VG P+ KG I P+ K G +R+TV ++ + HA+T Y V+
Sbjct: 177 REARKIYWAVTVGVPKPMKGRIDLPVAKEAGTRG--ERMTVDEDEGV----HAITYYTVL 230
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ + ++ L P TGR HQLRVH A LGTPI+GD KY Q
Sbjct: 231 EHAHKQAAFVALWPRTGRTHQLRVHMA-ALGTPILGDGKYAGQ----------------- 272
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
G LE L +Q LHLH + + LP+ +
Sbjct: 273 ------------GAFLEGAGDLPRQ--LHLHARRIILPHPRGGV---------------- 302
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM+ +WD
Sbjct: 303 IDVTAPLPKHMRPAWDYFG 321
>gi|149187024|ref|ZP_01865331.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
gi|148829313|gb|EDL47757.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
Length = 376
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V R + R ++ YWALVVG P +GVI APL K G+
Sbjct: 150 TSGILLVARTPGSAAFFSKRFSGRSAKKIYWALVVGVPDIRQGVIEAPLAKQPGSGGEK- 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ D A A T+Y+V++ + WL+L P+TGR HQLRVHCA +G PIVGD
Sbjct: 209 ----MHVDHEGGAP-AKTKYRVVESAGKKVAWLELQPMTGRTHQLRVHCA-AMGHPIVGD 262
Query: 134 YKYGWQ 139
KYG +
Sbjct: 263 GKYGGK 268
>gi|83593991|ref|YP_427743.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|386350743|ref|YP_006048991.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
gi|83576905|gb|ABC23456.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|346719179|gb|AEO49194.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
Length = 330
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 55/193 (28%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+VVG P +G I L KV G+ +R+ + N ++ + AVT ++V+ +
Sbjct: 177 YWAIVVGRPPMLQGTIKGALAKVA--GGRGERMEI-NEEE---GKRAVTDFRVVDQAAKA 230
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
W++L P TGR HQLRVHC E +GTPI+GD KYG P + + E+PK
Sbjct: 231 CAWVELHPRTGRTHQLRVHCLE-MGTPILGDGKYGG----------PGAFLEGT--ELPK 277
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 222
R+HLH + + LP+ + + L+++AP
Sbjct: 278 --------------------RMHLHARALALPHPAGGV----------------LEIIAP 301
Query: 223 LPSHMQRSWDVLN 235
P H S L
Sbjct: 302 PPPHFVESLKTLG 314
>gi|90417736|ref|ZP_01225648.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
gi|90337408|gb|EAS51059.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
Length = 328
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A + G T +++ D +K YWA++ G P +G IS L K +G D
Sbjct: 155 VVARTRGAATALTKAFRERDTKKT-----YWAILKGVPVPHEGRISTFLVKEQTPDG--D 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ + + A HA+T Y+VI+ ++W+++ P TGR HQLRVH + G PI+GD
Sbjct: 208 RMRTAKHGE-EGADHALTHYRVIENLAQNFSWVEMEPYTGRTHQLRVHALHI-GNPILGD 265
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY D+N E P G + Q RLHLH + + +
Sbjct: 266 PKY---------------FEHDTNWEFP-------------GGV---QKRLHLHARRIVI 294
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S + +APLP HM +++++
Sbjct: 295 PHPSGGF----------------IDQIAPLPPHMIQTFNLFG 320
>gi|378825699|ref|YP_005188431.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii HH103]
gi|365178751|emb|CCE95606.1| K06179 ribosomal large subunit pseudouridine synthase C
[Sinorhizobium fredii HH103]
Length = 357
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 56/221 (25%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
IA + G +++ D K YW+LV G PR + IS L K +G R
Sbjct: 183 IARTRGAAQQLTAAFRERDTRK-----IYWSLVKGVPRKREDRISTWLVKEQTPDGDRMR 237
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
I +D A HA++ Y++++ + WL++ P TGR HQLRVH A + G PI+GD
Sbjct: 238 IAKHGDD---GADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHI-GHPIIGDP 293
Query: 135 KYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
KY D N P G + Q RLHLH + + +P
Sbjct: 294 KY---------------FEADVNWTFP-------------GGM---QNRLHLHARCIDIP 322
Query: 195 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + LK+ APLP HM +SW++L
Sbjct: 323 HPNGG----------------RLKITAPLPPHMVQSWNLLG 347
>gi|417860108|ref|ZP_12505164.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens F2]
gi|338823172|gb|EGP57140.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens F2]
Length = 329
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 100/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHQDKISTWLVKEQTA 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HA++ Y+VI + WL++ P TGR HQLRVH +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G I Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGI---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|319899068|ref|YP_004159161.1| ribosomal large subunit pseudouridine synthase C [Bartonella
clarridgeiae 73]
gi|319403032|emb|CBI76587.1| ribosomal large subunit pseudouridine synthase C [Bartonella
clarridgeiae 73]
Length = 327
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 56/221 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A S G V ++ + +K YWALV G PR + IS + + + ++D
Sbjct: 153 VVARSRGAAQVLTAAFRARETKKT-----YWALVRGVPRKKQDKISTWMAREITT--QAD 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + Q + HA++ Y+V+ +WL++ P TGR HQLRVH A + PI+GD
Sbjct: 206 KMRVCEHRQ-PDSNHAISYYRVLDTRGKSLSWLEMEPYTGRTHQLRVHAAHI-NHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY DSN E+P+ G+ Q RLHLH + + +
Sbjct: 264 SKY---------------FFSDSNWELPR------GV----------QNRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
P+ S I L + APLP HM +S+++
Sbjct: 293 PHPSGGI----------------LDITAPLPPHMVQSFNIF 317
>gi|424910331|ref|ZP_18333708.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846362|gb|EJA98884.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 329
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHQDKISTWLVKEQTI 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HAV+ Y+VI + WL++ P TGR HQLRVH +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G I Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGI---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|418296255|ref|ZP_12908099.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens CCNWGS0286]
gi|355539687|gb|EHH08925.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens CCNWGS0286]
Length = 329
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHQDKISTWLVKEQTM 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HAV+ Y+VI + WL++ P TGR HQLRVH +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G I Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGI---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|408785243|ref|ZP_11196990.1| ribosomal large subunit pseudouridine synthase C [Rhizobium lupini
HPC(L)]
gi|408488837|gb|EKJ97144.1| ribosomal large subunit pseudouridine synthase C [Rhizobium lupini
HPC(L)]
Length = 329
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHQDKISTWLVKEQTI 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HAV+ Y+VI + WL++ P TGR HQLRVH +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G I Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGI---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|222148667|ref|YP_002549624.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
gi|221735653|gb|ACM36616.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
Length = 330
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 97/227 (42%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR IS + K +
Sbjct: 150 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVKGVPRKHDDKISTWVVKEQTE 204
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G RI D A HAV+ Y+V++ + WL++ P TGR HQLR+H + G
Sbjct: 205 DGDRMRIARHGED---GADHAVSYYRVLETAAQSLAWLEMEPYTGRTHQLRLHALHI-GH 260
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 261 PIIGDPKY---------------YIDDPNWDFP-------------GGV---QKRLHLHA 289
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ L++ APLP HM ++W++L
Sbjct: 290 RHIDIPHPDGG----------------RLRITAPLPPHMVQTWNLLG 320
>gi|451940782|ref|YP_007461420.1| ribosomal large subunit pseudouridine synthase C [Bartonella
australis Aust/NH1]
gi|451900169|gb|AGF74632.1| ribosomal large subunit pseudouridine synthase C [Bartonella
australis Aust/NH1]
Length = 327
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 92/198 (46%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR K IS + K G D++ + + + S+ HA++ Y+V+
Sbjct: 171 RETKKIYWALVRGIPRKKKDKISTWMVKETTAQG--DKMRICGHGEPDSS-HAISYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A +G PI+GD KY DS
Sbjct: 228 GTRGRALSWLEMEPHTGRTHQLRVHAA-YMGHPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHLH + +P+ S +
Sbjct: 272 NWELP-------------GGI---QNRLHLHAHRIRIPHPSGGV---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + APLP HM +S+++L
Sbjct: 300 LDITAPLPPHMVQSFNLL 317
>gi|389878460|ref|YP_006372025.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
gi|388529244|gb|AFK54441.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
Length = 326
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 89/200 (44%), Gaps = 54/200 (27%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R + YWA+ +G PR ++GVI PL K V+ G + V D Q AVT Y+V
Sbjct: 174 ERTTTKIYWAVTLGVPRPARGVIDLPLAKRQVERGGERMVAVDEGD----GQTAVTEYEV 229
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ + + L PLTGR HQ+R H A + GTPIVGD KYG Q DL
Sbjct: 230 LA-AGGPCALVALKPLTGRTHQIRAHLAAI-GTPIVGDLKYGGQA---------VDL--- 275
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
+ +P+ RLHLH + +TL G D +
Sbjct: 276 RGQGLPR--------------------RLHLHARRLTL-------------DGPDGRR-- 300
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
+ + A +P HM +S+D L
Sbjct: 301 -ISVRAAIPPHMAQSFDRLG 319
>gi|335037208|ref|ZP_08530519.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
ATCC 31749]
gi|333791364|gb|EGL62750.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
ATCC 31749]
Length = 329
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVRGVPRKHQDKISTWLVKEQTP 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HA++ Y+VI + WL++ P TGR HQLRVH A +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVH-ALYMGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGV---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|144899540|emb|CAM76404.1| ribosomal large subunit pseudouridine synthase C [Magnetospirillum
gryphiswaldense MSR-1]
Length = 333
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 54/199 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALVVG P+ +G I A L K+ G++ V+ D+ + AVT Y+V+
Sbjct: 173 RAARKCYWALVVGVPKLRQGRIDAALAKL---PGRAGEKMAVDEDE---GKRAVTWYRVV 226
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ WL++ P TGR HQLR H A ++GTPI+GD KYG
Sbjct: 227 DNALRKAAWLEMEPRTGRTHQLRAHTA-LMGTPIMGDGKYGGTEA--------------- 270
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
SG+ + + ++HLH + + +P+ +
Sbjct: 271 ---------------FISGTGVSR--KMHLHARAVRIPHPRTG---------------KE 298
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L +VAPLP HM++S++
Sbjct: 299 LVVVAPLPEHMEKSFEFFG 317
>gi|395784154|ref|ZP_10463993.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395423909|gb|EJF90097.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 326
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + K G D++ V + + + HAV+ Y+V+
Sbjct: 170 RETKKTYWALVRGVPRKKQDKISTWMVKETTTQG--DKMRVCEHGE-PDSNHAVSYYRVL 226
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY D+
Sbjct: 227 DTRGRALSWLEMEPYTGRTHQLRVHAA-YMNHPIIGDSKY---------------FFSDN 270
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHLH + + +P+ S I
Sbjct: 271 NWELP-------------GGI---QNRLHLHARRIRIPHPSGGI---------------- 298
Query: 217 LKLVAPLPSHMQRSWDVL 234
L ++APLP HM +S+++L
Sbjct: 299 LDIIAPLPPHMVQSFNLL 316
>gi|319405867|emb|CBI79499.1| ribosomal large subunit pseudouridine synthase C [Bartonella sp. AR
15-3]
Length = 327
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + + + + G D++ V Q + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPRKKQDKISTWMVREITEQG--DKVRVCERRQ-ADSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY F P DS
Sbjct: 228 DTRGKALSWLEMEPYTGRTHQLRVHAA-YMKHPIIGDSKY----------FFP-----DS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N +P G + Q RLHLH + + +P+ S I
Sbjct: 272 NWALP-------------GGM---QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + APLP HM +S+++
Sbjct: 300 LDITAPLPPHMLQSFNLF 317
>gi|323138142|ref|ZP_08073215.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
gi|322396604|gb|EFX99132.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
Length = 351
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 97/228 (42%), Gaps = 51/228 (22%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTPRCSKGVISAPLGKVV----VDN 69
+SG++ V + D R ++ YWALV G P+ ++G +S L K
Sbjct: 150 TSGVLLVAKTRRMAADLGEIFRSRQAKKIYWALVEGVPKPAQGRVSLYLAKGAGMEKARG 209
Query: 70 GKSD--RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 127
G D ++ V + + AQH++T Y ++ WL + PLTGR HQLR H AE +G
Sbjct: 210 GGRDLEKMRVAKHGEA-DAQHSLTYYAIVDKVAPRCAWLSMKPLTGRTHQLRAH-AEAIG 267
Query: 128 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 187
PI GD KYG + ++ P D E +LHL
Sbjct: 268 HPIFGDPKYGRRPEDDVRRRDPLRAMPDGLER-----------------------KLHLL 304
Query: 188 CKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + LP+ + TL + APLP HMQ+SW++
Sbjct: 305 ARRLVLPH----------------PRGGTLDVTAPLPPHMQKSWELFG 336
>gi|87200850|ref|YP_498107.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
aromaticivorans DSM 12444]
gi|87136531|gb|ABD27273.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
aromaticivorans DSM 12444]
Length = 436
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 87/195 (44%), Gaps = 37/195 (18%)
Query: 18 SSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R KR ++ YWALVVG P G+I PL K G +
Sbjct: 157 TSGVLLIARTPGSAAFFSKRFSCRSARKIYWALVVGVPDVKDGLIELPLAKQPGTGG--E 214
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V D+ Q A +RY+VI + + W++L PLTGR HQLRVH A +G PIVGD
Sbjct: 215 KMMV---DESGQGQSARSRYRVISRAGNAAAWVELQPLTGRTHQLRVHMA-AIGHPIVGD 270
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILE 179
KYG Q R+ + HP D +P HF + S
Sbjct: 271 GKYGGQAAFLTGSISRKMHLHARRLRIEHPEGDMIDVTAPLP----AHFAASMAS----- 321
Query: 180 KQPRLHLHCKEMTLP 194
L H +E LP
Sbjct: 322 ----LGFHEEEGDLP 332
>gi|325292801|ref|YP_004278665.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
H13-3]
gi|418406957|ref|ZP_12980276.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens 5A]
gi|325060654|gb|ADY64345.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
H13-3]
gi|358007450|gb|EHJ99773.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens 5A]
Length = 329
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVRGVPRKHQDKISTWLVKEQTP 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HA++ Y+VI + WL++ P TGR HQLRVH +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGV---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|159184771|ref|NP_354476.2| ribosomal large subunit pseudouridine synthase C [Agrobacterium
fabrum str. C58]
gi|159140059|gb|AAK87261.2| ribosomal large subunit pseudouridine synthase C [Agrobacterium
fabrum str. C58]
Length = 329
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 65/227 (28%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V R +++ D +K YWALV G PR + IS L K
Sbjct: 149 TSGVLVVARTRGAAQKLTAAFRERDTKKT-----YWALVRGVPRKHQDKISTWLVKEQTP 203
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+G DR+ + + + A HA++ Y+VI + WL++ P TGR HQLRVH +G
Sbjct: 204 DG--DRMRIAKHGE-EGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGH 259
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N + P G + Q RLHLH
Sbjct: 260 PIIGDPKY---------------YIDDPNWDFP-------------GGV---QKRLHLHA 288
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + +P+ + L++ APLP HM ++W++L
Sbjct: 289 RHIDIPHPNGG----------------RLRVSAPLPPHMVQTWNLLG 319
>gi|384218112|ref|YP_005609278.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 6]
gi|354957011|dbj|BAL09690.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 6]
Length = 404
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 87/203 (42%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 243 RSARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGDEGASHAVTYYAVV 299
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ + + TW+ L P+TGR HQLR H E +G PIVGD KY WQ
Sbjct: 300 ETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDAKYFNIENWQ------------- 345
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ +
Sbjct: 346 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV------------ 370
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HMQ+SW++L
Sbjct: 371 ----IDATAPLPPHMQQSWNLLG 389
>gi|395777982|ref|ZP_10458495.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|423715908|ref|ZP_17690129.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
gi|395418291|gb|EJF84618.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|395429210|gb|EJF95284.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
Length = 327
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A S G +++ + +K YWALV G P+ + IS + K + G D
Sbjct: 153 IVARSRGAAQALTAAFRERETKKT-----YWALVRGVPKKKQDKISTWMVKEMTAQG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V ++ + + HAV+ Y+V++ +WL++ P TGR HQLRVH A + PI+GD
Sbjct: 206 KMRVCDHGEP-DSHHAVSYYRVLESRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY DSN +P G I Q RLHLH + + +
Sbjct: 264 SKY---------------FFSDSNWTLP-------------GGI---QNRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S I L +VAPLP HM +S+++L+
Sbjct: 293 PHPSGGI----------------LDIVAPLPPHMVQSFNLLS 318
>gi|374576195|ref|ZP_09649291.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
gi|374424516|gb|EHR04049.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
Length = 404
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 87/203 (42%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 243 RSARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGDEGASHAVTYYAVV 299
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ + + TW+ L P+TGR HQLR H E +G PIVGD KY WQ
Sbjct: 300 ETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIENWQ------------- 345
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ +
Sbjct: 346 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV------------ 370
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HMQ+SW++L
Sbjct: 371 ----IDATAPLPQHMQQSWNLLG 389
>gi|319408734|emb|CBI82391.1| ribosomal large subunit pseudouridine synthase C [Bartonella
schoenbuchensis R1]
Length = 326
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + K G D++ V + + + HAV+ Y+V+
Sbjct: 170 RETKKTYWALVRGVPRKKQDKISTWMVKETTAQG--DKMRVCEHGE-PDSNHAVSYYRVL 226
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY D+
Sbjct: 227 DTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDSKY---------------FFSDN 270
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHLH + + +P+ S I
Sbjct: 271 NWELP-------------GGI---QNRLHLHARRIRIPHPSGGI---------------- 298
Query: 217 LKLVAPLPSHMQRSWDVL 234
L ++APLP HM +S+++L
Sbjct: 299 LDIIAPLPPHMVQSFNLL 316
>gi|365855074|ref|ZP_09395131.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
gi|363719513|gb|EHM02820.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
Length = 326
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 87/222 (39%), Gaps = 58/222 (26%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I + R + R ++ YWA+VVG P+ G I PL K G
Sbjct: 146 TSGVILLARDQRAASFLAKAFRSRDAKKTYWAIVVGQPQYEAGRIDMPLAK----QGGGP 201
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ V + AVT Y + TWL+L PLTGR HQLRVHCA L TPI+GD
Sbjct: 202 QGERVVPAEGKEGAFAVTEYTTRDVARRHATWLELHPLTGRTHQLRVHCASALETPILGD 261
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KYG Q H +S LHLH + + +
Sbjct: 262 GKYGGQA------AHLEGMSHS----------------------------LHLHARHLHI 287
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ TL + APLP HM S+ L
Sbjct: 288 PHPDGG----------------TLDVTAPLPPHMLESFATLG 313
>gi|452825056|gb|EME32055.1| ribosomal large subunit pseudouridine synthase C [Galdieria
sulphuraria]
Length = 358
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 55/201 (27%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R +++ YWALV+G P ++G I + +GK+ A+TRY+
Sbjct: 208 QQRQVKKLYWALVIGNPLPTQGEIRKAV------DGKT----------------AITRYR 245
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
V++ WL+L P+TGRK QLR+HCA+VL PI GD K+ P D +
Sbjct: 246 VVEKLHSVAAWLELEPITGRKRQLRLHCAQVLNCPIFGDEKF------------PFDRLE 293
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
++ + + H +L + +HLH ++ PN+ + + K Q
Sbjct: 294 ENTHLVAYQGLSH---------LLRRPKGIHLHAYSISFPNI-ETLDKPQ---------- 333
Query: 215 ETLKLV-APLPSHMQRSWDVL 234
+T K V APLP HM+ +W+ L
Sbjct: 334 KTWKTVTAPLPLHMENTWNTL 354
>gi|395779785|ref|ZP_10460254.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395420160|gb|EJF86445.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 327
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + K + G R+ + + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPRKKQDKISTWMVKEITAQGDKMRVC---EHGVPDSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRVLSWLEMEPHTGRTHQLRVHAAHI-DHPIIGDSKY---------------FFADS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHLH + + +P+ S +
Sbjct: 272 NWELP-------------GGI---QNRLHLHARRIRIPHPSGGL---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|423712841|ref|ZP_17687139.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395410537|gb|EJF77091.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 327
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + K + G R+ + + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPRKKQDKISTWMVKEITAQGDKMRVC---EHGVPGSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRVLSWLEMEPHTGRTHQLRVHAAH-MDHPIIGDSKY---------------FFADS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHLH + + +P+ S +
Sbjct: 272 NWELP-------------GGI---QNRLHLHARRIRIPHPSGGL---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|27380477|ref|NP_772006.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 110]
gi|27353641|dbj|BAC50631.1| bll5366 [Bradyrhizobium japonicum USDA 110]
Length = 405
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 87/203 (42%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 244 RSARKVYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGDEGASHAVTYYAVV 300
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ + + TW+ L P+TGR HQLR H E +G PIVGD KY WQ
Sbjct: 301 ETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIENWQ------------- 346
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ +
Sbjct: 347 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV------------ 371
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HMQ+SW++L
Sbjct: 372 ----IDATAPLPPHMQQSWNLLG 390
>gi|296535679|ref|ZP_06897854.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296264003|gb|EFH10453.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 331
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 90/230 (39%), Gaps = 74/230 (32%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVI--------SAPLGKV 65
+SG+I + R + R ++ YWA+VVG P+ G I P+G+
Sbjct: 151 TSGVILLARDASAAGFLAKAFRGRDAEKTYWAIVVGQPQYQGGRIDMRLAKQGGGPMGER 210
Query: 66 VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
VV D HA+T + + + TWL+L PLTGR HQLRVHCA
Sbjct: 211 VVPAEGRD------------GAHAITEFDTVDVARRHATWLELRPLTGRTHQLRVHCAAA 258
Query: 126 LGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLH 185
L PI+GD KYG Q + L SN LH
Sbjct: 259 LSCPILGDGKYGGQA---------AHLEGMSNA-------------------------LH 284
Query: 186 LHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
LH + + +P+ TL++ APLP HM S+ L
Sbjct: 285 LHARRIVVPHPEGG----------------TLEVTAPLPPHMLESFATLG 318
>gi|240850791|ref|YP_002972191.1| ribosomal large subunit pseudouridine synthase C [Bartonella
grahamii as4aup]
gi|240267914|gb|ACS51502.1| ribosomal large subunit pseudouridine synthase C [Bartonella
grahamii as4aup]
Length = 327
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 51/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ + IS + K + G D++ V + + A HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKKQDKISTWMVKEMTAQG--DKMRVCEHGEP-DAHHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGDTKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N +P G I Q RLHLH + + +P+ S I
Sbjct: 272 NWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L +VAPLP HM +S+++L+
Sbjct: 300 LDIVAPLPPHMVQSFNLLS 318
>gi|85373096|ref|YP_457158.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
gi|84786179|gb|ABC62361.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
Length = 399
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 18 SSGIITVERVMYKDNDNEKRILQRW----YWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R KR R YWALVVG P +G I APL K G+
Sbjct: 153 TSGVLLIARTPGSAAAYSKRFAGRSAKKVYWALVVGVPDLHEGEIDAPLAKQPGTGGEKM 212
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ N Q A TRY+V++ + + W++L P+TGR HQLRVH A +G PIVGD
Sbjct: 213 HVDEENG------QPAKTRYRVVERAGNRACWVELEPMTGRTHQLRVHMA-AMGHPIVGD 265
Query: 134 YKYGWQ 139
KYG Q
Sbjct: 266 GKYGGQ 271
>gi|398826077|ref|ZP_10584344.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
gi|398222009|gb|EJN08400.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
Length = 404
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 86/203 (42%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 243 RSARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGDEGASHAVTYYAVV 299
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ + + TW+ L P+TGR HQLR H E +G PIVGD KY WQ
Sbjct: 300 ETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIENWQ------------- 345
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+
Sbjct: 346 -------------LPGGL----------QNRLHLLARRIVIPHPRGGF------------ 370
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HMQ+SW++L
Sbjct: 371 ----IDATAPLPQHMQQSWNLLG 389
>gi|307946319|ref|ZP_07661654.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
gi|307769983|gb|EFO29209.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
Length = 333
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 57/222 (25%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGII V + + K R ++ YWA++ G P+ +G IS L + + +
Sbjct: 151 TSGIILVAKTRKAAQELTKAFRHRNTRKIYWAMLAGVPKPHQGRISTYLARS--EEMERM 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ +D+ AQHAV+ Y V + S +W+ L P+TGR HQLR H A + G PI+GD
Sbjct: 209 RVARHGDDE---AQHAVSLYSVFEKSAQKLSWVTLKPVTGRTHQLRAHAAHI-GHPIIGD 264
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY N E+P G I Q RLHL + + +
Sbjct: 265 DKY----------------FNIENWELP-------------GGI---QNRLHLLARRIVI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S + DVS APLP HMQ++W++L
Sbjct: 293 PHPSG-------NGMIDVS--------APLPPHMQQTWNLLG 319
>gi|403530661|ref|YP_006665190.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana RM-11]
gi|403232732|gb|AFR26475.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana RM-11]
Length = 327
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ + IS + K + G D++ V + + + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMRVCEHGE-PDSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRALSWLEMEPYTGRTHQLRVHAA-YMDNPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P+ G+ Q RLHLH + + +P+ S I
Sbjct: 272 NWKLPR------GI----------QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|386402208|ref|ZP_10086986.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
gi|385742834|gb|EIG63030.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
Length = 405
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 86/203 (42%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 244 RSARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGDEGASHAVTYYAVV 300
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ + + TW+ L P+TGR HQLR H E +G PIVGD KY WQ
Sbjct: 301 ETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKYFNIENWQ------------- 346
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+
Sbjct: 347 -------------LPGGL----------QNRLHLLARRIVIPHPRGGF------------ 371
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HMQ+SW++L
Sbjct: 372 ----IDATAPLPQHMQQSWNLLG 390
>gi|114327246|ref|YP_744403.1| ribosomal large subunit pseudouridine synthase C [Granulibacter
bethesdensis CGDNIH1]
gi|114315420|gb|ABI61480.1| ribosomal large subunit pseudouridine synthase C [Granulibacter
bethesdensis CGDNIH1]
Length = 366
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 51/218 (23%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK--------V 65
IA S G+ +++ + EK YWA+V G P +G I PL + V
Sbjct: 183 VIARSPGVAAKLAALFRTRETEK-----VYWAVVAGRPVPVEGRIDRPLLRQNDRNEPVV 237
Query: 66 VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
+ D D++T A+T Y+ + + WL+L PLTGR HQLRVHCA
Sbjct: 238 LADRKDRDKVT------------AITDYRTLDHAARKLAWLELRPLTGRMHQLRVHCA-A 284
Query: 126 LGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLH 185
+ PI+GD +YG W ++++E + L GL RLH
Sbjct: 285 MDAPILGDERYG-----SW---------RNTDERGVRNTALVEGLSR----------RLH 320
Query: 186 LHCKEMTLPNVSQAIQKVQLSSGCDVSK-LETLKLVAP 222
LH + ++LP+ + + V+ +++ ETL AP
Sbjct: 321 LHARRLSLPHPAGGMLSVEADLSPHMAETFETLGFTAP 358
>gi|374332189|ref|YP_005082373.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359344978|gb|AEV38352.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 59/223 (26%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V + + K R ++ YWA+V G P+ +G IS L + D G+
Sbjct: 167 TSGILLVAKTRRAAQELTKAFRHRNTRKIYWAMVAGVPKPRQGRISTYLAR---DEGEER 223
Query: 74 -RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
R+ +D+ AQHAV+ Y V++ S +W+ L P+TGR HQLR H A + G PI+G
Sbjct: 224 MRVARHGDDE---AQHAVSLYNVVEQSGQKLSWVTLKPVTGRTHQLRAHSAHI-GHPIIG 279
Query: 133 DYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMT 192
D KY N E+P G I Q +LHL + +
Sbjct: 280 DPKY----------------FNIQNWELP-------------GGI---QNKLHLLARRIV 307
Query: 193 LPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+P+ S + DVS APLP HMQ++W++L
Sbjct: 308 IPHPSG-------NGVIDVS--------APLPPHMQQTWNLLG 335
>gi|383642663|ref|ZP_09955069.1| RluA family pseudouridine synthase [Sphingomonas elodea ATCC 31461]
Length = 367
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG + + R Y R ++ YWALV+G P G I P+GK G+
Sbjct: 153 TSGALLIARSARAAAYFAKSFSGRTARKIYWALVMGVPDIEDGFIELPIGKQPGTGGEKM 212
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ + A TRY+VI+ + + W++L P TGR HQLRVH A +G PIVGD
Sbjct: 213 QV------DMEEGSPARTRYRVIEQAGNRCAWVELQPFTGRTHQLRVHMA-AIGHPIVGD 265
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIPKE--KTLH-FGLDLESGS 176
KYG Q R+ + HP D ++P +++H G DL G+
Sbjct: 266 GKYGLQEAFLTGGISRKMHLHARRIRIDHPDGGRIDVRADLPHHFAESMHTLGFDLSVGN 325
Query: 177 ILE 179
+E
Sbjct: 326 AIE 328
>gi|395793298|ref|ZP_10472703.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395431612|gb|EJF97630.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 327
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ ++ IS + K G+ R+ A HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKNQDKISTWMVKETTAQGEKMRVCEHGEP---DASHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 ETRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G I Q RLHLH + + +P+ S +
Sbjct: 272 NWKLP-------------GGI---QNRLHLHARRIRIPHPSGGV---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|395782689|ref|ZP_10463061.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
gi|395416567|gb|EJF82937.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
Length = 327
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A S G+ ++ + +K YWALV G P+ + IS + K + G D
Sbjct: 153 VVARSRGVAQALTAAFRARETKKT-----YWALVRGVPKKKQDKISTWMVKEITTQG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + + HAV+ Y+++ +WL++ P TGR HQLRVH A + PI+GD
Sbjct: 206 KMHVCEHGEP-DSHHAVSYYRILDTRGRTLSWLEMEPYTGRTHQLRVHAAH-MDHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY DSN +P G I Q RLHLH + + +
Sbjct: 264 TKY---------------FFSDSNWTLP-------------GGI---QNRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S I L +VAPLP HM +S+++L+
Sbjct: 293 PHPSGGI----------------LDIVAPLPPHMVQSFNLLS 318
>gi|254470362|ref|ZP_05083766.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
gi|211960673|gb|EEA95869.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
Length = 349
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 102/223 (45%), Gaps = 59/223 (26%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V + + K R ++ YWA+V G P+ +G IS L + D G+
Sbjct: 167 TSGILLVAKTRRAAQELTKAFRHRNTRKIYWAMVAGVPKPRQGRISTYLAR---DEGEER 223
Query: 74 -RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
R+ +D+ AQHAV+ Y V++ S W+ L P+TGR HQLR H A + G PI+G
Sbjct: 224 MRVARHGDDE---AQHAVSLYNVVEQSGQKLAWVTLKPVTGRTHQLRAHSAHI-GHPIIG 279
Query: 133 DYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMT 192
D KY N E+P G I Q +LHL + +
Sbjct: 280 DPKY----------------FNIQNWELP-------------GGI---QNKLHLLARRIV 307
Query: 193 LPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+P+ S + DVS APLP HMQ++W++L
Sbjct: 308 IPHPSG-------NGVIDVS--------APLPPHMQQTWNLLG 335
>gi|341614661|ref|ZP_08701530.1| pseudouridylate synthase [Citromicrobium sp. JLT1363]
Length = 398
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 18 SSGIITVERVMYKDNDNEKRILQRW----YWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R KR R YWALVVG P G I APL K G+
Sbjct: 163 TSGVLLIARTPGSAAAFSKRFSGRSAKKVYWALVVGVPEQHVGEIDAPLAKQPGTGGEKM 222
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ + Q A TRY+V++ + + WL+L PLTGR HQLRVH A +G PI+GD
Sbjct: 223 HV------DMEGGQPAKTRYRVVERAGNKAAWLELEPLTGRTHQLRVHLA-AIGHPILGD 275
Query: 134 YKYGWQ 139
KYG Q
Sbjct: 276 GKYGGQ 281
>gi|85707668|ref|ZP_01038734.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
gi|85689202|gb|EAQ29205.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
Length = 395
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALVVG P +G I APL K G+ ++ D+ Q A TRY+V+
Sbjct: 176 RSARKVYWALVVGVPEVREGTIDAPLAKQPGTGGEK-----MHVDE-EGGQIAKTRYRVV 229
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ + W++L PLTGR HQLRVH A +G PIVGD KYG Q
Sbjct: 230 ERAGTRAAWVELEPLTGRTHQLRVHLA-AIGHPIVGDGKYGGQ 271
>gi|423713068|ref|ZP_17687328.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395424694|gb|EJF90874.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 327
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ ++ IS + K G+ R+ A HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKNQDKISTWIVKETTAQGEKMRVCEHGEP---DASHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 ETRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G I Q RLHLH + + +P+ S +
Sbjct: 272 NWKLP-------------GGI---QNRLHLHARRIRIPHPSGGV---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|348507843|ref|XP_003441465.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Oreochromis niloticus]
Length = 387
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 39/192 (20%)
Query: 24 VERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD--------------- 68
VE V+ + +N+ ++R YW + VG P S+G+I P+ + V
Sbjct: 190 VEHVLALNRNNK---VERKYWVITVGVPVPSEGLIDIPIIEREVTGPQPHYKMALSPLYR 246
Query: 69 -NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 127
N + D +T V + + A AVT+Y+V+ S G + ++L P TG KHQLRVH A LG
Sbjct: 247 LNNEGDGVTKVRSHR--QAHPAVTKYRVLD-SSSGCSLVELQPFTGVKHQLRVHMAFALG 303
Query: 128 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 187
PI+GD+KY W + P +++P+ G++ L LHLH
Sbjct: 304 CPILGDHKYSH-----WSKLAP--------QKLPERVLGKLGIEQSKVRHLP----LHLH 346
Query: 188 CKEMTLPNVSQA 199
+++TLP SQA
Sbjct: 347 ARQLTLPGSSQA 358
>gi|427429389|ref|ZP_18919424.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425880582|gb|EKV29278.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 325
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 18 SSGIITVERVMYKDNDN----EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R + + R ++ YWA+VVG P+ S+G +SAPL K GK+
Sbjct: 146 TSGVLVVGRTAKAASVLAAAFKSRDARKVYWAVVVGAPKPSEGRLSAPLAKA---PGKAG 202
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
V+ D + AVT ++ ++ WL++ PLTGR HQLRVH A +GTPI+GD
Sbjct: 203 ERMEVDEDW---GKPAVTVFRTVEAVAGKAAWLEMEPLTGRTHQLRVHAA-AMGTPILGD 258
Query: 134 YKYG 137
KYG
Sbjct: 259 GKYG 262
>gi|254459621|ref|ZP_05073037.1| pseudouridine synthase, RluA family [Rhodobacterales bacterium
HTCC2083]
gi|206676210|gb|EDZ40697.1| pseudouridine synthase, RluA family [Rhodobacteraceae bacterium
HTCC2083]
Length = 347
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 49/226 (21%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GK 71
+SG++ + R D R ++ YWA + G P G I L K G+
Sbjct: 146 TSGVLILGRTRRATADLTASFRHRNTRKIYWAAIAGVPNPRMGTIKYGLMKAPGHGARGE 205
Query: 72 SDRITVVNN---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+++ ++ DQ A+ A+T Y V++ + +W L P+TGR HQLR H +E +G
Sbjct: 206 GEKMICIHPREVDQTEGAKRALTDYAVLETAGQRTSWCALIPITGRTHQLRAHMSE-MGH 264
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
P+VGD KYG ++ L G + G L K +LHLH
Sbjct: 265 PVVGDGKYGGSG----------------------QENLGDGWGSQLGGDLSK--KLHLHA 300
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
+ + + + S TL + APLP HMQR+WD
Sbjct: 301 RSLQIEHPSTKA---------------TLHITAPLPDHMQRTWDTF 331
>gi|290979858|ref|XP_002672650.1| predicted protein [Naegleria gruberi]
gi|284086228|gb|EFC39906.1| predicted protein [Naegleria gruberi]
Length = 624
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 10/103 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS----DRITVVNNDQIMSAQHAVTRYQ 94
L++ YWA+ VG P + G I K+V+D K +++ V+N + S++ +V+ Y+
Sbjct: 494 LKKCYWAVTVGVPTPTTGRI-----KMVIDIQKDANGVEKVVPVDN-KTDSSKISVSEYK 547
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I W+ L P+TGRKHQLRVHCA LG PI+GDYKYG
Sbjct: 548 TIDHMTDKLAWVALYPVTGRKHQLRVHCASALGAPILGDYKYG 590
>gi|383771170|ref|YP_005450235.1| putative ribosomal large subunit pseudouridine synthase C
[Bradyrhizobium sp. S23321]
gi|381359293|dbj|BAL76123.1| putative ribosomal large subunit pseudouridine synthase C
[Bradyrhizobium sp. S23321]
Length = 406
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 88/211 (41%), Gaps = 60/211 (28%)
Query: 29 YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 88
Y + R ++ YWALV G P+ +G IS L K + + D I + A H
Sbjct: 237 YLTGEFRSRSARKTYWALVPGLPKPKQGRISTFLAK---EESEDDTIMRIAQHGDEGASH 293
Query: 89 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKW 144
AVT Y V++ + + TW+ L P+TGR HQLR H A + G PIVGD KY WQ
Sbjct: 294 AVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKYFNIENWQ----- 347
Query: 145 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 204
L GL Q RLHL + + +P+ +
Sbjct: 348 ---------------------LPGGL----------QNRLHLLARRIVIPHPRGGV---- 372
Query: 205 LSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HM +SW++L
Sbjct: 373 ------------IDATAPLPPHMLQSWNLLG 391
>gi|163868619|ref|YP_001609828.1| ribosomal large subunit pseudouridine synthase C [Bartonella
tribocorum CIP 105476]
gi|161018275|emb|CAK01833.1| ribosomal large subunit pseudouridine synthase C [Bartonella
tribocorum CIP 105476]
Length = 327
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A S G +++ + +K YWALV G P+ + IS + K + G D
Sbjct: 153 IVARSRGAAQALTAAFRERETKKT-----YWALVRGVPKKKQDKISTWMVKEMTAQG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V ++ + + HAV+ Y+V+ +WL++ P TGR HQLRVH A + PI+GD
Sbjct: 206 KMRVCDHGEP-DSHHAVSYYRVLDTRGRTLSWLEMEPYTGRTHQLRVHAA-YMDHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY DSN +P G I Q RLHLH + + +
Sbjct: 264 SKY---------------FFSDSNWTLP-------------GGI---QNRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ S I L ++APLP HM +S+++L+
Sbjct: 293 PHPSGGI----------------LDIIAPLPPHMVQSFNLLS 318
>gi|395786460|ref|ZP_10466187.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|423716647|ref|ZP_17690837.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
gi|395422758|gb|EJF88954.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|395428721|gb|EJF94796.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
Length = 327
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 97/221 (43%), Gaps = 56/221 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+A S G ++ D +K YWALV G P+ + IS L K +G D
Sbjct: 153 VVARSRGAAQSLTAAFRARDTKKT-----YWALVRGVPKKKQDKISTWLVKEATADG--D 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + + S HAV+ Y+VI +WL++ P TGR HQLRVH A + PI+GD
Sbjct: 206 KMRVCEHGEPDS-DHAVSHYRVIDTRSRVLSWLEMEPYTGRTHQLRVHAA-FINHPIIGD 263
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY DSN E+P G I Q RLHLH + + +
Sbjct: 264 PKY---------------FFSDSNWELP-------------GGI---QNRLHLHARRIRI 292
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
N S + L + APLP HM +S+++L
Sbjct: 293 SNPSGGL----------------LDVTAPLPPHMVQSFNLL 317
>gi|148259184|ref|YP_001233311.1| RluA family pseudouridine synthase [Acidiphilium cryptum JF-5]
gi|326402337|ref|YP_004282418.1| pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|338983760|ref|ZP_08632919.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
gi|146400865|gb|ABQ29392.1| ribosomal large subunit pseudouridine synthase C [Acidiphilium
cryptum JF-5]
gi|325049198|dbj|BAJ79536.1| pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|338207305|gb|EGO95283.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
Length = 324
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 56/200 (28%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+VVG P +G I PL ++ G R +++ A A+T Y+ +
Sbjct: 168 RDMEKTYWAIVVGLPIPMEGQIDLPLARIGGAQGARTRPADRDDE---DAAKAITDYRTL 224
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++WL+L PLTGR HQLR HCA + GTPI+GD YG
Sbjct: 225 DHAGRKFSWLELHPLTGRTHQLRAHCAAI-GTPILGDAPYG------------------- 264
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPR-LHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
E + E PR LHLH + + LP+ +
Sbjct: 265 ----------------EHLAFAEGFPRQLHLHARRLVLPH----------------PRGG 292
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
L + A LP+HM+ ++ L
Sbjct: 293 RLSVEAELPAHMKTTFATLG 312
>gi|451942151|ref|YP_007462788.1| ribosomal large subunit pseudouridine synthase C [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451901538|gb|AGF76000.1| ribosomal large subunit pseudouridine synthase C [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 327
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 95/198 (47%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ ++ IS + V + + D++ V + + S+ HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKNQDKISTWM--VKENTAQGDKMRVCEHGEPDSS-HAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRTLSWLEMEPYTGRTHQLRVHAAHI-DHPIIGDPKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G I Q RLHLH + + +P+ S I
Sbjct: 272 NWKLP-------------GGI---QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|402772320|ref|YP_006591857.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401774340|emb|CCJ07206.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 356
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 47/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK---VVVDNGKS---DRITVVNNDQIMSAQHAV 90
R ++ YWALV G P+ ++G IS L K + G + +++ V + + AQH++
Sbjct: 178 RQAKKIYWALVEGVPKPAQGRISLYLAKGAGMEKSRGGARELEKMRVAKHGEA-DAQHSL 236
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T Y ++ WL + PLTGR HQLR H AE +G PI GD KYG HR +
Sbjct: 237 TYYAIVDKVAPRCAWLSMKPLTGRTHQLRAH-AEAIGHPIFGDPKYG---HRPEDEVR-- 290
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
+D +P+ GLD +LHL + + LP+ +
Sbjct: 291 --RRDPLRAMPE------GLDR----------KLHLLARRLVLPHPKGGV---------- 322
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM++SW++
Sbjct: 323 ------IDVTAPLPDHMKKSWELFG 341
>gi|399991417|ref|YP_006571657.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398655972|gb|AFO89938.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 343
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P G I L K +G+ +++ ++++++ S A+ + T
Sbjct: 165 RATRKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHT 224
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + W+ + P+TGR HQLR H AE+ G PI GD KYG +
Sbjct: 225 HYATLYRVASRAAWVAMEPITGRTHQLRAHMAEI-GHPIAGDGKYGGSS----------- 272
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
++ L G + G I+ K +LHLHC+ M + +
Sbjct: 273 -----------QENLGDGWGAQLGGIISK--KLHLHCRRMAFEHPTTK------------ 307
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ L + APLP HM+ SWD
Sbjct: 308 ---KPLSITAPLPDHMKDSWDTFG 328
>gi|395789469|ref|ZP_10468989.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
gi|395430012|gb|EJF96064.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
Length = 327
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 51/199 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G P+ + IS + K + G D++ V + + + HAV+ Y+V
Sbjct: 170 ERETKKTYWALVRGVPKKKQDKISTWMVKDITAQG--DKMRVCEHGE-PDSNHAVSYYRV 226
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ +WL++ P TGR HQLRVH A + PI+GD KY D
Sbjct: 227 LDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY---------------FFSD 270
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
SN +P G I Q RLHLH + + +P+ S +
Sbjct: 271 SNWALP-------------GGI---QNRLHLHARRIRIPHPSGGV--------------- 299
Query: 216 TLKLVAPLPSHMQRSWDVL 234
L ++APLP HM +S+++L
Sbjct: 300 -LDIIAPLPPHMVQSFNLL 317
>gi|400755741|ref|YP_006564109.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
gi|398654894|gb|AFO88864.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
Length = 348
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P G I L K +G+ +++ ++++++ S A+ + T
Sbjct: 170 RATRKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + W+ + P+TGR HQLR H AE+ G PI GD KYG +
Sbjct: 230 HYATLYRVASRAAWVAMEPITGRTHQLRAHMAEI-GHPIAGDGKYGGSS----------- 277
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
++ L G + G I+ K +LHLHC+ M + +
Sbjct: 278 -----------QENLGDGWGAQLGGIISK--KLHLHCRRMAFEHPTTK------------ 312
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ L + APLP HM+ SWD
Sbjct: 313 ---KPLSITAPLPDHMKDSWDTFG 333
>gi|402826617|ref|ZP_10875794.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
gi|402259851|gb|EJU10037.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
Length = 426
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + R ++ YWALVVG P + G+I PL K G +
Sbjct: 150 TSGVLLIARTPGSAAFFSKRFSGRTAKKIYWALVVGVPSINDGMIELPLAKQPGTGG--E 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD
Sbjct: 208 KMHVDEKE----GQTARTRYRVIDRAGNRAAWVELHPLTGRTHQLRVHMA-AIGHPIVGD 262
Query: 134 YKYGWQ 139
KYG Q
Sbjct: 263 GKYGGQ 268
>gi|319407393|emb|CBI81044.1| ribosomal large subunit pseudouridine synthase C [Bartonella sp.
1-1C]
Length = 327
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + + + G D++ V Q + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPRKKQDKISTWMVREITAQG--DKMRVCERRQ-PDSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGKALSWLEMEPYTGRTHQLRVHAAYI-NHPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P+ G+ Q RLHLH + + +P+ S +
Sbjct: 272 NWDLPR------GM----------QNRLHLHARRIRIPHPSGGV---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + APLP HM +S+++
Sbjct: 300 LDVTAPLPPHMVQSFNLF 317
>gi|115525546|ref|YP_782457.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
BisA53]
gi|115519493|gb|ABJ07477.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisA53]
Length = 458
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 87/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D + D I V A HAVT Y V+
Sbjct: 297 RSARKVYWALVAGVPKPKQGRISTYLAK---DESEDDSIMRVAAHGDEGASHAVTYYAVV 353
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + G I+GD KY F+
Sbjct: 354 ETSAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIIGDPKY----------FN------IE 396
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P GL Q RLHL + + +P+ +
Sbjct: 397 NWELPG------GL----------QKRLHLLARRIAIPHPRGGV---------------- 424
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 425 IDVTAPLPPHMLQSWNLLG 443
>gi|389694600|ref|ZP_10182694.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
gi|388587986|gb|EIM28279.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
Length = 435
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 55/201 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR +G +S L K D G S + D+ A HA+T Y V+
Sbjct: 273 RTTRKIYWALVAGVPRVKQGRVSTYLAKEG-DEGDSRMRVARHGDE--GASHALTYYAVV 329
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
S WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 330 DTSAQKLAWLSLKPVTGRTHQLRAHTAHI-GHPIVGDPKY-------------FDI---E 372
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGCDVSKL 214
N E+P G I Q +LHL + + + P + I
Sbjct: 373 NWELP-------------GGI---QNKLHLLARRIVIAHPRTGKPID------------- 403
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+ APLP HMQ+S+++L
Sbjct: 404 ----VTAPLPPHMQQSFNLLG 420
>gi|49474373|ref|YP_032415.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana str. Toulouse]
gi|49239877|emb|CAF26275.1| Ribosomal large subunit pseudouridine synthase c [Bartonella
quintana str. Toulouse]
Length = 327
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ + IS + K + G D++ V + + + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMCVCEHGE-PDSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRALSWLEMEPYTGRTHQLRVHAA-YMDNPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P+ G+ Q RLHLH + + +P+ S I
Sbjct: 272 NWKLPR------GI----------QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + APLP HM +S+++L
Sbjct: 300 LDITAPLPPHMVQSFNLL 317
>gi|298291467|ref|YP_003693406.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296927978|gb|ADH88787.1| pseudouridine synthase, RluA family [Starkeya novella DSM 506]
Length = 363
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 53/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR ++G IS L K + ++R+ V + A HA++ Y V+
Sbjct: 203 RSARKVYWALVPGVPRPAQGRISTYLAK----DEAAERMRVARHGDD-EASHAISYYAVV 257
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL + P+TGR HQLR H A + G PIVGD KY F +
Sbjct: 258 DHAAQKLSWLSMKPVTGRTHQLRAHAAHI-GHPIVGDPKY----------F--------N 298
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
E P L GL Q RLHL + + +P+ +A + + +S
Sbjct: 299 VENWP----LPGGL----------QNRLHLLARRLVIPH-PRADKLIDVS---------- 333
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HMQ+SW+VL
Sbjct: 334 ----APLPPHMQQSWNVLG 348
>gi|316933564|ref|YP_004108546.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
DX-1]
gi|315601278|gb|ADU43813.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
DX-1]
Length = 455
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D + D I V A HAVT Y V+
Sbjct: 294 RSARKIYWALVAGVPKPKQGRISTYLAK---DESEEDSIMRVAKHGDDGASHAVTYYAVV 350
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 351 ETSGQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ------------- 396
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ + DVS
Sbjct: 397 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV--------IDVS 425
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 426 --------APLPPHMLQSWNLLG 440
>gi|39936271|ref|NP_948547.1| pseudouridine synthase [Rhodopseudomonas palustris CGA009]
gi|39650126|emb|CAE28649.1| possible ribosomal large subunit pseudouridine synthase C
[Rhodopseudomonas palustris CGA009]
Length = 455
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D + D I V A HAVT Y V+
Sbjct: 294 RSARKIYWALVAGVPKPKQGRISTYLAK---DESEEDSIMRVAKHGDDGASHAVTYYAVV 350
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 351 ETSGQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ------------- 396
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ + DVS
Sbjct: 397 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV--------IDVS 425
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 426 --------APLPPHMLQSWNLLG 440
>gi|395787674|ref|ZP_10467266.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
gi|395410296|gb|EJF76851.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
Length = 327
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 51/199 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G P+ + IS + K + G D++ V + + + HAV+ Y+V
Sbjct: 170 ERETKKTYWALVRGVPKKKQDKISTWVVKDITAQG--DKMRVCEHGE-PDSNHAVSYYRV 226
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ +WL++ P TGR HQLRVH A + PI+GD KY D
Sbjct: 227 LDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY---------------FFSD 270
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
SN +P G I Q RLHLH + + +P+ S +
Sbjct: 271 SNWALP-------------GGI---QNRLHLHARRIRIPHPSGGV--------------- 299
Query: 216 TLKLVAPLPSHMQRSWDVL 234
L ++APLP HM +S+++L
Sbjct: 300 -LDIIAPLPPHMVQSFNLL 317
>gi|399067133|ref|ZP_10748776.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
gi|398027292|gb|EJL20848.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
Length = 453
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 95/222 (42%), Gaps = 60/222 (27%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + R ++ YWALVVG P +G+I PL K G +
Sbjct: 163 TSGVLLIARTPGSAAFFSKRFSGRTARKIYWALVVGVPDIHEGLIELPLAKQPGTGG--E 220
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V + Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD
Sbjct: 221 KMHVDEKE----GQTARTRYRVIDRAGNRAAWVELHPLTGRTHQLRVHMA-AIGHPIVGD 275
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KYG Q E L +GSI K +HLH + +
Sbjct: 276 GKYGGQ-----------------------EAFL-------TGSISRK---MHLHARRLI- 301
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
++ G L + APLP H S D L
Sbjct: 302 ---------IEHPDGV------PLDVTAPLPEHFANSLDSLG 328
>gi|182678295|ref|YP_001832441.1| RluA family pseudouridine synthase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634178|gb|ACB94952.1| pseudouridine synthase, RluA family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 350
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 58/214 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVIS-------------APLGKVVVDNGKSDRITVVNNDQI 83
R ++ YWA+V G P+ ++G IS P G+ +++ V + +
Sbjct: 166 RQARKIYWAVVEGVPKPAQGRISLYLAKGEGMEDKRGPHGRDAEARAGLEKMRVAKHGE- 224
Query: 84 MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
A+H+VT Y ++ WL + P+TGR HQLR H AE +G PI+GD KYG +
Sbjct: 225 EDARHSVTYYAIVDKVPSRLAWLSMKPITGRTHQLRAH-AEAIGHPIIGDPKYGLK---- 279
Query: 144 WKQFHPSDLSK--DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 201
P D + D N IP+ G++ +LHL + + LP+ I
Sbjct: 280 -----PKDDPRRNDPNRAIPE------GVER----------KLHLLARRLILPHPRGGI- 317
Query: 202 KVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
L + APLP HMQ+++D+
Sbjct: 318 ---------------LDVTAPLPPHMQKTFDLFG 336
>gi|319404393|emb|CBI77996.1| ribosomal large subunit pseudouridine synthase C [Bartonella
rochalimae ATCC BAA-1498]
Length = 327
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR + IS + + + G D++ V Q + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPRKKQDKISTWMVREITAQG--DKMRVCERRQ-PDSNHAVSYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGKALSWLEMEPYTGRTHQLRVHAAYI-NHPIIGDSKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G + Q RLHLH + + +P+ S I
Sbjct: 272 NWDLP-------------GGM---QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + APLP HM +S+++
Sbjct: 300 LDVTAPLPPHMVQSFNLF 317
>gi|254476979|ref|ZP_05090365.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
gi|214031222|gb|EEB72057.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
Length = 348
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 45/201 (22%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVTRYQ 94
++ YWALV G P G I L K +G+ +++ ++++++ S A+ + T+Y
Sbjct: 173 RKIYWALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTQYA 232
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
+ W+ + P+TGR HQLR H AE+ G PI GD KYG
Sbjct: 233 TLYRVASRAAWVAMEPITGRTHQLRAHMAEI-GHPIAGDGKYG----------------- 274
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
S +E L G + G I+ K +LHLHC+ M + +
Sbjct: 275 GSGQE-----NLGDGWGAQLGGIISK--KLHLHCRRMAFEHPTTK--------------- 312
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+ L + APLP HM+ SWD
Sbjct: 313 KPLSITAPLPEHMKESWDTFG 333
>gi|85703848|ref|ZP_01034951.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
gi|85671168|gb|EAQ26026.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
Length = 347
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 47/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWA V G P G + L K G+ +++ V+ ++ S A+ A T
Sbjct: 169 RNTRKIYWAAVAGVPTPRMGTVRYGLVKAPGHGAKGEGEKMICVHPREVESTPGAKPATT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y VI+ + +W+ L P+TGR HQLR H AE+ G P+VGD KYG
Sbjct: 229 DYAVIEAAGARTSWMALIPVTGRTHQLRAHMAEI-GHPVVGDGKYG-------------- 273
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN-VSQAIQKVQLSSGCD 210
S +E L G + G + + +LHLH + + + + VS+AI
Sbjct: 274 ---GSGQE-----NLGDGWGAQLGGDVSR--KLHLHARSLKIEHPVSRAI---------- 313
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
L + APLP HMQR+WD+
Sbjct: 314 ------LHITAPLPEHMQRTWDLFQ 332
>gi|395790919|ref|ZP_10470378.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
gi|395409215|gb|EJF75814.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
Length = 327
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ + IS + K +V G D++ V + + + HA++ Y+V+
Sbjct: 171 RETKKIYWALVRGVPKKKQDKISTWMVKEMVPQG--DKMRVCEHGE-PDSYHAISYYRVL 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A V PI+GD KY D+
Sbjct: 228 DTRGRTLSWLEMEPYTGRTHQLRVHAAHV-DHPIIGDSKY---------------FFSDN 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G I Q RLHLH + + +P+ S +
Sbjct: 272 NWKLP-------------GGI---QNRLHLHARRIRIPHPSGGL---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMIQSFNLL 317
>gi|334141387|ref|YP_004534593.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
gi|333939417|emb|CCA92775.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
Length = 420
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + R ++ YWALVVG P S G+I PL K G+
Sbjct: 153 TSGVLLIARTPGSAAFFSKRFSGRSARKIYWALVVGVPSISDGMIELPLAKQPGTGGEK- 211
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ D+ Q A TRY+V+ + + W++L PLTGR HQLRVH A +G PIVGD
Sbjct: 212 ----MHVDE-EGGQPARTRYRVLDRAGNRAAWVELHPLTGRTHQLRVHMA-AIGHPIVGD 265
Query: 134 YKYGWQ 139
KYG Q
Sbjct: 266 GKYGGQ 271
>gi|384263153|ref|YP_005418341.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
gi|378404255|emb|CCG09371.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
Length = 372
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 39/161 (24%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALVVG P +G + L K G+ +R+ V D + A+T ++VI +
Sbjct: 198 YWALVVGRPPLEQGTMRGALAKEA--RGRGERMVVNEED----GRPAITDFRVIDQAVGA 251
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
WL L P TGR HQLRVHC E +G PI+GD KYG Q F P E+P
Sbjct: 252 CAWLDLRPRTGRTHQLRVHCLE-MGIPILGDGKYGGQ-----GAFLP---------ELPV 296
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 203
+ RLHLH + + +P+ + +V
Sbjct: 297 AR------------------RLHLHARALAIPHPKGNVLRV 319
>gi|220926865|ref|YP_002502167.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951472|gb|ACL61864.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 457
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 90/199 (45%), Gaps = 50/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWAL G PR +G IS L K + + + + D+ A HA+T Y V+
Sbjct: 294 RAARKIYWALAAGVPRVRQGRISTYLAKEEMGDADARMRVAQHGDE--GASHALTYYAVV 351
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL L P+TGR HQLR H A + G P+VGD KY D+
Sbjct: 352 DQAGQKLSWLSLKPVTGRTHQLRAHAAHI-GHPLVGDPKY-------------FDI---E 394
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P GL Q RLHL + + +P+ + + DV+
Sbjct: 395 NWELPG------GL----------QNRLHLLARRIVIPH-------PRTNKPVDVT---- 427
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 428 ----APLPPHMAQSWNLLG 442
>gi|170744410|ref|YP_001773065.1| RluA family pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168198684|gb|ACA20631.1| pseudouridine synthase, RluA family [Methylobacterium sp. 4-46]
Length = 469
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 50/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWAL G P+ +G +S L K V G++D V A HA+T Y V+
Sbjct: 306 RAARKIYWALAAGVPKVRQGRVSTYLAKEEV--GEADARMRVAQHGDEGASHALTYYAVV 363
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL L P+TGR HQLR H A + G P+VGD KY D+
Sbjct: 364 DQAGQKLSWLSLKPVTGRTHQLRAHAAHI-GHPLVGDPKY-------------FDI---E 406
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P GL Q RLHL + + +P+ + + DV+
Sbjct: 407 NWELPG------GL----------QNRLHLLARRIVIPH-------PRTNKPVDVT---- 439
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 440 ----APLPPHMAQSWNLLG 454
>gi|456354592|dbj|BAM89037.1| ribosomal large subunit pseudouridine synthase C [Agromonas
oligotrophica S58]
Length = 468
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 85/199 (42%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I V A HAVT Y V+
Sbjct: 307 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEDDTIMRVAAHGDEGASHAVTYYAVV 363
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + G PIVGD KY F+ + +
Sbjct: 364 EASASKLAWVSLKPVTGRTHQLRAHMAHI-GHPIVGDPKY----------FNIENWA--- 409
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+
Sbjct: 410 ---------LPGGL----------QNRLHLLARRIVIPHPRGGF---------------- 434
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ APLP HM +SW++L
Sbjct: 435 IDATAPLPPHMLQSWNLLG 453
>gi|209884846|ref|YP_002288703.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|337741510|ref|YP_004633238.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM5]
gi|386030526|ref|YP_005951301.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM4]
gi|209873042|gb|ACI92838.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
gi|336095594|gb|AEI03420.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM4]
gi|336099174|gb|AEI06997.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM5]
Length = 412
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 84/203 (41%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 251 RSARKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRIAAHGDEGAAHAVTYYAVV 307
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 308 EASAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNKENWQ------------- 353
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ +
Sbjct: 354 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV------------ 378
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 379 ----IDVTAPLPPHMLQSWNLLG 397
>gi|431806514|ref|YP_007233415.1| Ribosomal large subunit pseudouridine synthase C [Liberibacter
crescens BT-1]
gi|430800489|gb|AGA65160.1| Ribosomal large subunit pseudouridine synthase C [Liberibacter
crescens BT-1]
Length = 327
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 65/226 (28%)
Query: 18 SSGIITVERV---------MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SGI V R +++ + EK YW LV G P+ +G IS+ L + +
Sbjct: 150 TSGIFVVARTRNAAQSFSEAFRNRNTEKT-----YWLLVKGVPKKYEGRISSWL--IKKE 202
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
SD + V + + A HAV+ ++VI+ + WL++ P TGR HQLRVH + G
Sbjct: 203 GIGSDYVKVAMHGE-KGAGHAVSYFKVIQTVAKKFCWLEMKPYTGRTHQLRVHALHI-GH 260
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KY D N +P+ + KQ LHLH
Sbjct: 261 PIIGDTKY---------------FINDPNWHLPEN--------------IPKQ--LHLHA 289
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
+ + +P+ S L++ APLPSHM ++W++L
Sbjct: 290 RYIDIPHPSGG----------------RLQVTAPLPSHMVQTWNLL 319
>gi|91977597|ref|YP_570256.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB5]
gi|91684053|gb|ABE40355.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisB5]
Length = 444
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 85/199 (42%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K D + D I V A HAVT Y V+
Sbjct: 283 RSARKIYWALVAGVPKPKQGRISTYLAK---DESEDDSIMRVAAHGDDGASHAVTYYAVV 339
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + G I+GD KY WK
Sbjct: 340 ETSATKLAWVSLKPVTGRTHQLRAHMAHI-GHAIIGDPKY--FNIENWK----------- 385
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
L GL Q RLHL + + +P+ + DVS
Sbjct: 386 ---------LPGGL----------QNRLHLLARRIVIPHPRGGV--------IDVS---- 414
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 415 ----APLPPHMLQSWNLLG 429
>gi|126736635|ref|ZP_01752375.1| Pseudouridine synthase, RluD [Roseobacter sp. CCS2]
gi|126713948|gb|EBA10819.1| Pseudouridine synthase, RluD [Roseobacter sp. CCS2]
Length = 351
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 49/227 (21%)
Query: 18 SSGIITVER--VMYKD-NDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GK 71
+SG++ + R +M K +N K R ++ YWA V G P G I L K G+
Sbjct: 149 TSGVLLLARTRMMAKQLTENLKHRETRKIYWAAVAGVPHPRAGTIKYGLVKAPGHGRGGE 208
Query: 72 SDRITVVNN---DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
++++ V+ D + A+ A + Y V+ W L P+TGR HQLR H AE+ G
Sbjct: 209 NEKMRCVHPRDLDSVEGAKRATSDYAVMDTLASRAAWCALVPITGRTHQLRAHMAEI-GH 267
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PIVGD KYG S +E + G +G E +LHLH
Sbjct: 268 PIVGDGKYG-----------------GSGQE-------NLGDGWGAGMGSEIGRKLHLHA 303
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ +T+ + + TL L APLP HMQ +WD +
Sbjct: 304 RSLTIEHPATG---------------ATLHLTAPLPEHMQNTWDFVG 335
>gi|49475763|ref|YP_033804.1| ribosomal large subunit pseudouridine synthase c [Bartonella
henselae str. Houston-1]
gi|49238570|emb|CAF27811.1| Ribosomal large subunit pseudouridine synthase c [Bartonella
henselae str. Houston-1]
Length = 327
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 51/198 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ + IS + K + + + D++ V + + + HAV+ Y+V+
Sbjct: 171 RETKKTYWALVRGVPKKKQDKISTWMVKDI--STQVDKMRVCEHGE-PDSYHAVSYYRVV 227
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+WL++ P TGR HQLRVH A + PI+GD KY DS
Sbjct: 228 DTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDAKY---------------FFSDS 271
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N +P G I Q RLHLH + + +P+ S I
Sbjct: 272 NWTLP-------------GGI---QNRLHLHARRIRIPHPSGGI---------------- 299
Query: 217 LKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 LDIVAPLPPHMVQSFNLL 317
>gi|86749455|ref|YP_485951.1| pseudouridine synthase RluD [Rhodopseudomonas palustris HaA2]
gi|86572483|gb|ABD07040.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris HaA2]
Length = 453
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 85/203 (41%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 292 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEDDSIMRIAEHGDEGASHAVTYYAVV 348
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 349 ETSAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ------------- 394
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+
Sbjct: 395 -------------LPGGL----------QKRLHLLARRIVIPH----------------P 415
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ T+ + APLP HM +SW++L
Sbjct: 416 RGGTIDVSAPLPPHMLQSWNLLG 438
>gi|392382334|ref|YP_005031531.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877299|emb|CCC98114.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 229
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ + YWA+V GTP +G I PL KV +G RI V ++ Q A+T Y+V+
Sbjct: 88 VDKTYWAVVAGTPPEEQGRIELPLKKVTNKSGGW-RIVVADD-----GQSAITDYRVLG- 140
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+G TWL+L P TGR HQ+RVHCA LG P++GD +YG
Sbjct: 141 RGNGTTWLELKPHTGRTHQIRVHCATALGCPLLGDPQYG 179
>gi|254486362|ref|ZP_05099567.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
gi|214043231|gb|EEB83869.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
Length = 349
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 47/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVV---NNDQIMSAQHAVT 91
R ++ YWA V G P G I L K G+ +++ V + D A+ A T
Sbjct: 170 RQTRKIYWAAVAGVPHPKNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMDTTEGAKRATT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + + W+ L P+TGR HQLR H AE+ G PIVGD KYG
Sbjct: 230 DYATLAQAGTRTCWVALIPVTGRTHQLRAHMAEI-GHPIVGDGKYGGSG----------- 277
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN-VSQAIQKVQLSSGCD 210
++ + G + G + K +LHLH + +TL + V++A
Sbjct: 278 -----------QENMGDGWGAQLGGDISK--KLHLHARSLTLEHPVTKA----------- 313
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
TL L+AP+P HM R+WD
Sbjct: 314 -----TLNLIAPMPDHMVRTWDTFQ 333
>gi|332187840|ref|ZP_08389574.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
gi|332012190|gb|EGI54261.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
Length = 363
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALVVG P G I P+ K G+ + N Q A +RY+VI
Sbjct: 173 RTAKKIYWALVVGVPSIEDGTIELPIAKQPGTGGEKMHVDEENG------QAARSRYRVI 226
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT--------------HR 142
+ + + W++L P TGR HQLRVH A +G PIVGD KYG R
Sbjct: 227 ERAGNRCCWVELQPFTGRTHQLRVHMA-AIGHPIVGDGKYGGAAAFLTGGISRKMHLHAR 285
Query: 143 KWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSILEKQ 181
+ + HP D E+P E G D G +L ++
Sbjct: 286 RIRVDHPDGGRIDQTAELPSHFAESMNQLGFDEIRGDVLPQE 327
>gi|90424892|ref|YP_533262.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB18]
gi|90106906|gb|ABD88943.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisB18]
Length = 501
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 85/204 (41%), Gaps = 60/204 (29%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V
Sbjct: 339 ERSARKVYWALVAGVPKPKQGRISTYLAK---EESEDDTIMRIAEHGDEGASHAVTYYAV 395
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSD 151
++ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 396 VETSASKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ------------ 442
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
L GL Q RLHL + + +P+
Sbjct: 443 --------------LPGGL----------QNRLHLLARRIVIPHPRGG------------ 466
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
T+ + APLP HM +SW++L
Sbjct: 467 ----TIDVSAPLPPHMLQSWNLLG 486
>gi|338707762|ref|YP_004661963.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294566|gb|AEI37673.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 370
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R Y R + YWALVVG P +G+I PL + G+
Sbjct: 150 TSGVLLLARSANAAGYFSKSFSGRTAHKVYWALVVGVPSIEEGLIDLPLARQPGSGGEKM 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ N A T Y++++ + + WL+L PLTGR HQLR H + +G PIVGD
Sbjct: 210 HVDEEN------GATAKTLYRIVERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGD 262
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESG 175
KYG + R+ HP+ S D + ++P+ E G DLE+G
Sbjct: 263 GKYGGKEAFLTGGISRKMHLHARRLVIPHPNGSSLDVHADLPEHFIESMGLLGFDLENG 321
>gi|192291994|ref|YP_001992599.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
TIE-1]
gi|192285743|gb|ACF02124.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
TIE-1]
Length = 455
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 85/203 (41%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I V A HAVT Y V+
Sbjct: 294 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEDDSIMRVAKHGDDGASHAVTYYAVV 350
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + G IVGD KY WQ
Sbjct: 351 ETSGQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIVGDPKYFNIENWQ------------- 396
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ + DVS
Sbjct: 397 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV--------IDVS 425
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 426 --------APLPPHMLQSWNLLG 440
>gi|85715100|ref|ZP_01046084.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
gi|85698015|gb|EAQ35888.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
Length = 380
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 89/199 (44%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + + I V A HAVT Y V+
Sbjct: 219 RSARKIYWALVAGVPKPKQGRISTYLAK---EENEEESIMRVAAHGDEGASHAVTYYAVV 275
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A V G I+GD KY +K+
Sbjct: 276 ETSAQKLAWVSLKPVTGRTHQLRAHMAHV-GHAIIGDPKY---------------FNKE- 318
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P GL Q RLHL + + +P+ + DVS
Sbjct: 319 NWQLPG------GL----------QNRLHLLARRIVIPHPRGGV--------IDVS---- 350
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 351 ----APLPPHMLQSWNLLG 365
>gi|338975000|ref|ZP_08630355.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
gi|338231599|gb|EGP06734.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
Length = 424
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I V A HAVT Y V+
Sbjct: 263 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRVAEHGDEGAAHAVTYYAVV 319
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + IVGD KY +K+
Sbjct: 320 EASAQKLAWVSLKPVTGRTHQLRAHMAHI-NHAIVGDPKY---------------FNKE- 362
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G I Q RLHL + + +P+
Sbjct: 363 NWQLP-------------GGI---QKRLHLLARRIVIPHPRGGF---------------- 390
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 391 IDVTAPLPPHMLQSWNLLG 409
>gi|56551335|ref|YP_162174.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260753046|ref|YP_003225939.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411894|ref|YP_005621259.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|56542909|gb|AAV89063.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552409|gb|ACV75355.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932268|gb|AEH62808.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 374
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R Y R + YWALVVG P ++G+I PL + G+
Sbjct: 150 TSGVLLLARSANNAGYFSKAFSGRTAHKVYWALVVGVPSITEGLIDLPLARQPGSGGEKM 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ N A T Y+VI+ + + WL+L PLTGR HQLR H + +G PIVGD
Sbjct: 210 HVDEEN------GATAKTLYRVIERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGD 262
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESG 175
KYG + R+ HP + D + ++P+ E G DLE+G
Sbjct: 263 GKYGGKEAFLTGGVSRKMHLHARRLVIPHPDGSNLDVHADLPEHFLESMSLLGFDLENG 321
>gi|414167314|ref|ZP_11423543.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410891131|gb|EKS38929.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 415
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I V A HAVT Y V+
Sbjct: 254 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRVAEHGDEGAAHAVTYYAVV 310
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + IVGD KY +K+
Sbjct: 311 EASAQKLAWVSLKPVTGRTHQLRAHMAHI-NHAIVGDPKY---------------FNKE- 353
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P G I Q RLHL + + +P+
Sbjct: 354 NWQLP-------------GGI---QKRLHLLARRIVIPHPRGGF---------------- 381
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 382 IDVTAPLPPHMLQSWNLLG 400
>gi|397676697|ref|YP_006518235.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397386|gb|AFN56713.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 374
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R Y R + YWALVVG P ++G+I PL + G+
Sbjct: 150 TSGVLLLARSANNAGYFSKAFSGRTAHKVYWALVVGVPSITEGLIDLPLARQPGSGGEKM 209
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ N A T Y+VI+ + + WL+L PLTGR HQLR H + +G PIVGD
Sbjct: 210 HVDEEN------GATAKTLYRVIERAGNAACWLELQPLTGRTHQLRAHLS-AIGFPIVGD 262
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESG 175
KYG + R+ HP + D + ++P+ E G DLE+G
Sbjct: 263 GKYGGKEAFLTGGVSRKMHLHARRLVIPHPDGSNLDVHADLPEHFLESMSLLGFDLENG 321
>gi|414174042|ref|ZP_11428669.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410890676|gb|EKS38475.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 408
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 86/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I V A HAVT Y V+
Sbjct: 247 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRVAAHGDEGAAHAVTYYAVV 303
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + IVGD KY +K+
Sbjct: 304 EASAQKLAWVSLKPVTGRTHQLRAHMAHIDHA-IVGDPKY---------------FNKE- 346
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHL + + +P+
Sbjct: 347 NWELP-------------GGI---QKRLHLLARRIVIPHPRGGF---------------- 374
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 375 IDVTAPLPPHMLQSWNLLG 393
>gi|149913096|ref|ZP_01901630.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
gi|149813502|gb|EDM73328.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
Length = 348
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 47/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWA V G P G I L K G+ +++ ++ + + S A+ A T
Sbjct: 170 RDTRKIYWAAVAGVPSPRMGTIRFGLVKAPGHGAQGEGEKMLCLHPEAVDSTPGAKRATT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ VI+ + W+ L P+TGR HQLR H AE+ G PIVGD KYG
Sbjct: 230 DFAVIESAGARCAWVALVPVTGRTHQLRAHMAEI-GHPIVGDGKYGGSG----------- 277
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN-VSQAIQKVQLSSGCD 210
++ + G + G + + +LHLH + +TL + VS+A
Sbjct: 278 -----------QENMGDGWGAQLGGEISR--KLHLHARSLTLEHPVSRA----------- 313
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
L L APLP HM+R+WD+
Sbjct: 314 -----RLHLTAPLPDHMKRTWDMFQ 333
>gi|347739549|ref|ZP_08870795.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
gi|346917122|gb|EGX99601.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
Length = 337
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 85/196 (43%), Gaps = 53/196 (27%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+++YWA+ VG P+ +G I A L K + G V+ D+ AVT YQVI+ +
Sbjct: 182 RKYYWAVTVGVPKQYQGKIDAALAK---EAGTRGERMAVDEDE---GARAVTLYQVIENA 235
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
++ L PLTGR HQLR H + GTPI+GD KY Q + F P E
Sbjct: 236 HRQAAFVALWPLTGRTHQLRAHMVAI-GTPILGDGKYAGQ-----EAFLP------GGAE 283
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
+P++ LHLH + + +PN + + +
Sbjct: 284 LPRQ--------------------LHLHARRIVIPNPRGG---------------KPIDV 308
Query: 220 VAPLPSHMQRSWDVLN 235
A LP HM ++W+
Sbjct: 309 TANLPPHMAKTWEYFG 324
>gi|188579622|ref|YP_001923067.1| pseudouridine synthase [Methylobacterium populi BJ001]
gi|179343120|gb|ACB78532.1| pseudouridine synthase, RluA family [Methylobacterium populi BJ001]
Length = 446
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 87/199 (43%), Gaps = 50/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR +G +S L K + + + D+ A HA+T Y +
Sbjct: 283 RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDE--GASHALTYYATV 340
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 341 DQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY-------------FDV---E 383
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHL + + +P+ + DVS
Sbjct: 384 NWELP-------------GGI---QNRLHLLARRIVIPH-------PRTGQPVDVS---- 416
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 417 ----APLPPHMAQSWNLLG 431
>gi|163849730|ref|YP_001637773.1| RluA family pseudouridine synthase [Methylobacterium extorquens
PA1]
gi|163661335|gb|ABY28702.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
PA1]
Length = 468
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 88/200 (44%), Gaps = 52/200 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R ++ YWALV G PR +G +S L K D R+ +D A HA+T Y
Sbjct: 305 RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD---GASHALTYYAT 361
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ + WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 362 VDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY-------------FDV--- 404
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E+P G I Q RLHL + + +P+ + Q V +S
Sbjct: 405 ENWELP-------------GGI---QNRLHLLARRIVIPH-PRTGQPVDVS--------- 438
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 439 -----APLPPHMAQSWNLLG 453
>gi|170747290|ref|YP_001753550.1| RluA family pseudouridine synthase [Methylobacterium radiotolerans
JCM 2831]
gi|170653812|gb|ACB22867.1| pseudouridine synthase, RluA family [Methylobacterium radiotolerans
JCM 2831]
Length = 471
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 50/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWAL G PR +G +S L K + + + D+ A HA+T Y ++
Sbjct: 308 RAARKIYWALTAGVPRVRQGRVSTYLAKEEPTDADARMRVAKHGDE--GASHALTYYAMV 365
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL P+TGR HQLR H A + G PIVGD KY S +
Sbjct: 366 DQAAQKLSWLSFKPVTGRTHQLRAHAAHI-GHPIVGDPKY---------------FSVE- 408
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHL + + +P+ + DVS
Sbjct: 409 NWELP-------------GGI---QNRLHLLARRIVIPH-------PRTGKPVDVS---- 441
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 442 ----APLPPHMAQSWNLLG 456
>gi|406989143|gb|EKE08954.1| Pseudouridine synthase [uncultured bacterium]
Length = 325
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 6/103 (5%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R +Q+ YWALV G P+ +G I+ L K +G+ R VN + S A T Y+
Sbjct: 174 KERKVQKTYWALVCGVPKKKEGSITLALSKKASVHGEKVR---VNTE---SGARATTYYR 227
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+++ L+L+P TGR HQLRVHCAE L TPI+GD KYG
Sbjct: 228 ILETLGTKMALLELTPKTGRMHQLRVHCAEGLKTPILGDGKYG 270
>gi|393773266|ref|ZP_10361664.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. Rr 2-17]
gi|392721146|gb|EIZ78613.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. Rr 2-17]
Length = 442
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + R ++ YWALVVG P G+I P+ K G+
Sbjct: 151 TSGVLLIARSAGSAAFFSKRFSGRTARKIYWALVVGVPGIHDGMIELPIAKQPGTGGEKM 210
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ + Q A TRY+VI + + W++L PLTGR HQLRVH A +G PIVGD
Sbjct: 211 HV------DKEAGQVARTRYRVIDRAGNSAAWVELHPLTGRTHQLRVHMA-AIGHPIVGD 263
Query: 134 YKYGWQ 139
KYG Q
Sbjct: 264 GKYGGQ 269
>gi|452752881|ref|ZP_21952620.1| Ribosomal large subunit pseudouridine synthase C [alpha
proteobacterium JLT2015]
gi|451959703|gb|EMD82120.1| Ribosomal large subunit pseudouridine synthase C [alpha
proteobacterium JLT2015]
Length = 395
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P G I PL K G+ ++ DQ Q A +RY+ I
Sbjct: 175 RTARKIYWAIVMGVPEIPDGRIDLPLAKQPGTGGEK-----MHVDQ-EGGQRAASRYRRI 228
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ + WL+L PLTGR HQLRVH E +G PIVGD KYG +
Sbjct: 229 DRAANRAAWLELQPLTGRTHQLRVHM-EAIGHPIVGDGKYGGK 270
>gi|23012328|ref|ZP_00052441.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 456
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 87/200 (43%), Gaps = 52/200 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R ++ YWALV G PR +G +S L K D R+ +D A HA+T Y
Sbjct: 293 RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD---GASHALTYYAT 349
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ + WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 350 VDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY-------------FDV--- 392
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E+P G I Q RLHL + + +P+ + DVS
Sbjct: 393 ENWELP-------------GGI---QNRLHLLARRIVIPH-------PRTGQPVDVS--- 426
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 427 -----APLPPHMAQSWNLLG 441
>gi|218528371|ref|YP_002419187.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218520674|gb|ACK81259.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
CM4]
Length = 468
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 88/200 (44%), Gaps = 52/200 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R ++ YWALV G PR +G +S L K D R+ +D A HA+T Y
Sbjct: 305 RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD---GASHALTYYAT 361
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ + WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 362 VDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY-------------FDV--- 404
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E+P G I Q RLHL + + +P+ + Q V +S
Sbjct: 405 ENWELP-------------GGI---QNRLHLLARRIVIPH-PRTGQPVDVS--------- 438
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 439 -----APLPPHMAQSWNLLG 453
>gi|395765156|ref|ZP_10445772.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
gi|395413009|gb|EJF79488.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
Length = 327
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 51/199 (25%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWALV G P+ + IS + K + G D++ V + + + HAV+ Y+V
Sbjct: 170 ERETKKTYWALVRGVPKKKQDKISTWMVKDITAQG--DKMRVCEHGEP-DSNHAVSYYRV 226
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ +WL++ P TGR HQLRVH A + PI+GD KY D
Sbjct: 227 LDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY---------------FFSD 270
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
SN + G I Q RLHLH + + +P+ S +
Sbjct: 271 SNWAL-------------LGGI---QNRLHLHARRIRIPHPSGGV--------------- 299
Query: 216 TLKLVAPLPSHMQRSWDVL 234
L +VAPLP HM +S+++L
Sbjct: 300 -LDIVAPLPPHMVQSFNLL 317
>gi|240136939|ref|YP_002961408.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|418058116|ref|ZP_12696096.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
gi|240006905|gb|ACS38131.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|373568325|gb|EHP94274.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
Length = 463
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 88/200 (44%), Gaps = 52/200 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R ++ YWALV G PR +G +S L K D R+ +D A HA+T Y
Sbjct: 300 RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD---GASHALTYYAT 356
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ + WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 357 VDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY-------------FDV--- 399
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E+P G I Q RLHL + + +P+ + Q V +S
Sbjct: 400 ENWELP-------------GGI---QNRLHLLARRIVIPH-PRTGQPVDVS--------- 433
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 434 -----APLPPHMAQSWNLLG 448
>gi|393768106|ref|ZP_10356648.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392726499|gb|EIZ83822.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 469
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 50/199 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWAL G PR +G +S L K + + + D+ A HA+T Y ++
Sbjct: 306 RAARKIYWALTAGVPRVRQGRVSTYLAKDEPTDADARMRVAKHGDE--GASHALTYYAMV 363
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL P+TGR HQLR H A + G PIVGD KY S +
Sbjct: 364 DQAAQKLSWLSFKPVTGRTHQLRAHAAHI-GHPIVGDPKY---------------FSVE- 406
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N E+P G I Q RLHL + + +P+ + DVS
Sbjct: 407 NWELP-------------GGI---QNRLHLLARRIVIPH-------PRTGRPVDVS---- 439
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 440 ----APLPPHMAQSWNLLG 454
>gi|254558792|ref|YP_003065887.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
gi|254266070|emb|CAX21822.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
Length = 468
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 88/200 (44%), Gaps = 52/200 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK-VVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
R ++ YWALV G PR +G +S L K D R+ +D A HA+T Y
Sbjct: 305 RAARKIYWALVAGVPRTRQGRVSTYLVKDEPTDADARMRVAKHGDD---GASHALTYYAT 361
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ + WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 362 VDQAAQKLAWLSLKPVTGRTHQLRAHAAHI-GHPIVGDPKY-------------FDV--- 404
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
N E+P G I Q RLHL + + +P+ + Q V +S
Sbjct: 405 ENWELP-------------GGI---QNRLHLLARRIVIPH-PRTGQPVDVS--------- 438
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 439 -----APLPPHMAQSWNLLG 453
>gi|299135225|ref|ZP_07028416.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
gi|298590202|gb|EFI50406.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
Length = 413
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 83/203 (40%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 252 RSARKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRIAEHGDEGAAHAVTYYAVV 308
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + IVGD KY WQ
Sbjct: 309 EASAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKYFNKENWQ------------- 354
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ +
Sbjct: 355 -------------LPGGL----------QKRLHLLARRIVIPHPRGGV------------ 379
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 380 ----IDVTAPLPPHMLQSWNLLG 398
>gi|149203330|ref|ZP_01880300.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149143163|gb|EDM31202.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 347
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 89/205 (43%), Gaps = 47/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-----NNDQIMSAQHAVT 91
R ++ YWA V G P G I L K K + ++ + D A+ A T
Sbjct: 169 RNTRKIYWAAVAGVPTPRMGTIRFGLVKAPGHGAKGEGEKMLCLHPRDIDATPGAKPATT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y VI+ + W+ L P+TGR HQLR H AE+ G PIVGD KYG
Sbjct: 229 DYAVIEAAGARTAWMALIPVTGRTHQLRAHMAEI-GHPIVGDGKYG-------------- 273
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN-VSQAIQKVQLSSGCD 210
S +E L G + G + + +LHLH + + + + VS+AI
Sbjct: 274 ---GSGQE-----NLGDGWGAQLGGDVSR--KLHLHARSLKIEHPVSRAI---------- 313
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
L + APLP HM R+WD+
Sbjct: 314 ------LHITAPLPEHMARTWDLFQ 332
>gi|83950496|ref|ZP_00959229.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
gi|83838395|gb|EAP77691.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
Length = 346
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 94/227 (41%), Gaps = 49/227 (21%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTP-----RCSKGVISAPLGKVVVD 68
+SG++ + R D R ++ YWA V G P G++ AP +
Sbjct: 145 TSGVLILARTRQMAADLTAAFRHRNTRKIYWAAVAGVPLPRMGTVKYGLVKAPGHGKGGE 204
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
K I D A+HA + Y V++ + W+ L P+TGR HQLR H AE LG
Sbjct: 205 GEKMLCIHPREVDNTPGAKHATSDYAVLENAGQRTAWMALVPVTGRTHQLRAHMAE-LGH 263
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PIVGD KYG ++ L G + G + + +LHLH
Sbjct: 264 PIVGDGKYGGSG----------------------QENLGDGWGAQLGGDVSR--KLHLHA 299
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ +T+ + + + L L APLP HM R+WD+
Sbjct: 300 RSLTIRHPATGAR---------------LHLTAPLPDHMARTWDLFQ 331
>gi|414162181|ref|ZP_11418428.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410879961|gb|EKS27801.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 413
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 83/203 (40%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I V A HAVT Y V+
Sbjct: 252 RSARKIYWALVAGVPKPKQGRISTYLAK---EENEEDSIMRVAAHGDEGAAHAVTYYAVV 308
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ S W+ L P+TGR HQLR H A + IVGD KY WQ
Sbjct: 309 EASAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKYFNKENWQ------------- 354
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
L GL Q RLHL + + +P+ +
Sbjct: 355 -------------LPGGL----------QNRLHLLARRIVIPHPRGGV------------ 379
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 380 ----IDVTAPLPPHMLQSWNLLG 398
>gi|393721178|ref|ZP_10341105.1| RluA family pseudouridine synthase [Sphingomonas echinoides ATCC
14820]
Length = 369
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG + + R Y R ++ YWALVVG P G+I P+ K G+
Sbjct: 156 TSGALLIARTARAAAYFSKSFSSRTARKTYWALVVGVPSIEDGMIELPIAKQPGTGGEK- 214
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ D+ A TRY+VI+ + WL+L P TGR HQLRVH A +G PIVGD
Sbjct: 215 ----MHVDE-KEGSPARTRYRVIEMAGTTTAWLELIPYTGRTHQLRVHLA-AIGHPIVGD 268
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGS 176
KYG Q R+ + HP + D E+P E G D G+
Sbjct: 269 GKYGGQAAFLTGNISRKMHLHSRRIRIDHPDGGAIDVQAELPTHFAESLKQLGFDEMLGN 328
Query: 177 IL 178
+
Sbjct: 329 TM 330
>gi|395491878|ref|ZP_10423457.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26617]
Length = 373
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG + + R Y R ++ YWALVVG P G+I P+ K G+
Sbjct: 160 TSGALLIARTARAAAYFSKSFSSRTARKTYWALVVGVPSIEDGMIELPIAKQPGTGGEK- 218
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ D+ A TRY+VI+ + WL+L P TGR HQLRVH A +G PIVGD
Sbjct: 219 ----MHVDE-KEGSPARTRYRVIEMAGTTTAWLELIPHTGRTHQLRVHLA-AIGHPIVGD 272
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGS 176
KYG Q R+ + HP + D E+P E G D G+
Sbjct: 273 GKYGGQAAFLTGNISRKMHLHSRRIRIDHPDGGAIDVQAELPTHFSESLKQLGFDEMLGN 332
Query: 177 IL 178
++
Sbjct: 333 MM 334
>gi|404254692|ref|ZP_10958660.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 373
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG + + R Y R ++ YWALVVG P G+I P+ K G+
Sbjct: 160 TSGALLIARTARAAAYFSKSFSSRTARKTYWALVVGVPSIEDGMIELPIAKQPGTGGEK- 218
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ D+ A TRY+VI+ + WL+L P TGR HQLRVH A +G PIVGD
Sbjct: 219 ----MHVDE-KEGSPARTRYRVIEMAGTTTAWLELIPHTGRTHQLRVHLA-AIGHPIVGD 272
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGS 176
KYG Q R+ + HP + D E+P E G D G+
Sbjct: 273 GKYGGQAAFLTGNISRKMHLHSRRIRIDHPDGGAIDVQAELPTHFSESLKQLGFDEMLGN 332
Query: 177 IL 178
++
Sbjct: 333 MM 334
>gi|393722169|ref|ZP_10342096.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26605]
Length = 374
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 83/188 (44%), Gaps = 30/188 (15%)
Query: 18 SSGIITVERVM----YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG + + R + R ++ YWALVVG P G I P+GK G+
Sbjct: 161 TSGALVIARTARAAGFLSKSFSSRTARKTYWALVVGVPSIEDGTIELPIGKQPGSGGEK- 219
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ D+ A TRY+VI+ + W++L P TGR HQLRVH A +G PIVGD
Sbjct: 220 ----MHVDE-KEGSPARTRYRVIEMAGTTTAWVELIPYTGRTHQLRVHLA-AIGHPIVGD 273
Query: 134 YKYGWQT--------------HRKWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGS 176
KYG Q R+ + HP D E+P E G D G+
Sbjct: 274 GKYGGQAAFLTGNISRKMHLHSRRIRIDHPDGGQIDVQAELPTHFAESLKQLGFDEMLGN 333
Query: 177 I--LEKQP 182
LE+ P
Sbjct: 334 TMPLEEPP 341
>gi|83854943|ref|ZP_00948473.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83941466|ref|ZP_00953928.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
gi|83842786|gb|EAP81953.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83847286|gb|EAP85161.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
Length = 349
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVV---NNDQIMSAQHAVT 91
R ++ YWA V G P G I L K G+ +++ V + + A+ A T
Sbjct: 170 RETRKIYWAAVAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMETTEGAKRATT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + + W+ L P+TGR HQLR H AE+ G PIVGD KYG
Sbjct: 230 DYATLAQAGKRTCWMALIPVTGRTHQLRAHMAEI-GHPIVGDGKYG-------------- 274
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E + G + G + K +LHLH + +TL + K +L+
Sbjct: 275 ---GSGQE-----NMGDGWGAQLGGDISK--KLHLHARSLTL---EHPVTKARLN----- 316
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
L APLP HM R+WD
Sbjct: 317 -------LTAPLPDHMARTWDTFQ 333
>gi|409399405|ref|ZP_11249694.1| pseudouridine synthase [Acidocella sp. MX-AZ02]
gi|409131440|gb|EKN01147.1| pseudouridine synthase [Acidocella sp. MX-AZ02]
Length = 327
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA S+ + ++ D EK YWAL+VG P +G I PL ++ D G++
Sbjct: 150 VIARSAKVAAKLSAAFRGRDVEK-----TYWALLVGLPDALEGRIDLPLKRI--DLGQTS 202
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R + AQ A+T Y+++ + + +LSP TGR HQLR HC LGTPI+GD
Sbjct: 203 RAEPASRKD-KEAQKAITDYRILDKAGRKFCLAELSPHTGRMHQLRAHCL-ALGTPILGD 260
Query: 134 YKYGWQTHRKW-KQFH 148
YG H + Q H
Sbjct: 261 EVYGSAYHEHFANQLH 276
>gi|84515664|ref|ZP_01003025.1| ribosomal large subunit pseudouridine synthase C [Loktanella
vestfoldensis SKA53]
gi|84510106|gb|EAQ06562.1| ribosomal large subunit pseudouridine synthase C [Loktanella
vestfoldensis SKA53]
Length = 351
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 49/227 (21%)
Query: 18 SSGIITVER--VMYKD-NDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGK 71
+SG++ + R +M K +N K R ++ YWA V G P G I L K G+
Sbjct: 149 TSGVLLLARTRMMAKQLTENLKHRETRKIYWAAVAGVPHPRAGTIKYGLVKAPGHGKGGE 208
Query: 72 SDRITVVNNDQIMS---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
++++ V+ ++I S A+ A + Y V+ W L P+TGR HQLR H AE+ G
Sbjct: 209 NEKMRCVHPNEIASTEGAKRATSDYAVMDTLASRAAWCALVPITGRTHQLRAHMAEI-GH 267
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD KYG ++ L G GS + + ++HLH
Sbjct: 268 PIIGDGKYGGS----------------------GQENLGDGWGASMGSEIGR--KMHLHA 303
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ +T+ + + +TL L A LP HMQ +WD +
Sbjct: 304 RSLTIEHPATG---------------KTLHLTADLPEHMQNTWDFVG 335
>gi|159042871|ref|YP_001531665.1| ribosomal large subunit pseudouridine synthase C [Dinoroseobacter
shibae DFL 12]
gi|157910631|gb|ABV92064.1| ribosomal large subunit pseudouridine synthase C [Dinoroseobacter
shibae DFL 12]
Length = 348
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWA V G P+ G + L K G+ +++ ++ Q+ + A+ A T
Sbjct: 170 RQTRKIYWAAVAGVPQPQLGTVRYALMKAPGHGKRGEGEKMLCIDPRQMDAHPDAKRATT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ W L P+TGR HQLR H AE LG PI+GD KYG
Sbjct: 230 DYAVLSALGRRVAWCVLVPITGRTHQLRAHMAE-LGHPIIGDGKYG-------------- 274
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + K +LHLH + ++L + + QLS
Sbjct: 275 ---GSGQE-----NLGDGWGAQLGGEMSK--KLHLHARHLSL---THPVTGAQLS----- 316
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
L APLP HM R+W+ L
Sbjct: 317 -------LTAPLPPHMARTWEALG 333
>gi|126728208|ref|ZP_01744024.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
gi|126711173|gb|EBA10223.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
Length = 347
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 92/204 (45%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P G I L K G+++++ V+ +I + A+ A T
Sbjct: 169 REARKIYWALVAGVPTPYLGEIKYGLVKAPGHGKGGEAEKMRCVHPKEIATTEGAKRAHT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + +W+ + P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 229 LYATLYRVAGRASWVAMEPVTGRTHQLRAHMAEI-GHPIIGDGKYG-------------- 273
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G I+ K +LHLH + +TL + K ++
Sbjct: 274 ---GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLTL---LHPVTKTPFTA---- 316
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
APLP HM++SWD L
Sbjct: 317 --------TAPLPEHMKQSWDTLG 332
>gi|47229673|emb|CAG06869.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 91/206 (44%), Gaps = 45/206 (21%)
Query: 39 LQRWYWALVVGTPRCSKGVISAP----------------LGKVVVDNGKSDRITVVNNDQ 82
+Q YW + VG P S+GVI P L + N D +T V +
Sbjct: 202 VQITYWVITVGVPVPSEGVIDIPIIEREVTGPQPHYKMALSPLFKMNDAGDGLTRVRAHR 261
Query: 83 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
A AVTRY+V+ SC G + ++L P TG KHQ+RVH A L PI+GD+KY
Sbjct: 262 --QAHSAVTRYKVLDSSC-GCSLVELQPSTGVKHQMRVHMAFGLTCPILGDHKYS----- 313
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 202
W + P +++P+ GL+ L LHLH + +TLP Q+
Sbjct: 314 HWNKLAP--------QKLPERVLKKLGLEQSKSRHLP----LHLHARRLTLPGA----QR 357
Query: 203 VQLSSGCDVSKLET-----LKLVAPL 223
+S C K T L+L PL
Sbjct: 358 AGVSVRCPAPKYFTQTSTLLQLTLPL 383
>gi|75675586|ref|YP_318007.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74420456|gb|ABA04655.1| ribosomal large subunit pseudouridine synthase C [Nitrobacter
winogradskyi Nb-255]
Length = 412
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 88/199 (44%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + RI ++ A HAVT Y V+
Sbjct: 251 RSARKIYWALVAGVPKPKQGRISTYLAKEENEEESIMRIAAHGDE---GASHAVTYYAVV 307
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + G I+GD KY +K+
Sbjct: 308 ETSAQKLAWVSLKPVTGRTHQLRAHMAHI-GHAIIGDPKY---------------FNKE- 350
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P GL Q RLHL + + +P+ + D S
Sbjct: 351 NWQLPG------GL----------QNRLHLLARRIVIPHPRGGV--------IDAS---- 382
Query: 217 LKLVAPLPSHMQRSWDVLN 235
APLP HM +SW++L
Sbjct: 383 ----APLPPHMLQSWNLLG 397
>gi|357976563|ref|ZP_09140534.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
KC8]
Length = 368
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 24/159 (15%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWAL+ G P G+I P+ K G+ ++ D+ A TRY+VI
Sbjct: 178 RTARKVYWALITGVPSIEDGMIELPIAKQPGTGGEK-----MHVDE-KEGSPARTRYRVI 231
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT--------------HR 142
+ + + W++L P TGR HQLRVH A +G PIVGD KYG Q R
Sbjct: 232 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGQEAYLTGGVSRKMHLHAR 290
Query: 143 KWKQFHPSDLSKDSNEEIP---KEKTLHFGLDLESGSIL 178
+ + HP D ++P E G DL G L
Sbjct: 291 RLRVDHPDGGQIDVRADLPTHFSESLELLGFDLADGDAL 329
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040285|gb|ACT57081.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 56/221 (25%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V R + R +Q+ YW+LV G P+ K I+ L K G D
Sbjct: 154 TSGILVVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGG--D 211
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ VV ++ A +A++ ++VI + WL++ P TGR HQLRVH +G PIVGD
Sbjct: 212 YVHVVKQNE-KGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALH-MGCPIVGD 269
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
+KY ++ + I Q +L+LH + M L
Sbjct: 270 HKYC------------ANFKGNFTSPI--------------------QNKLYLHARYMDL 297
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
P+ L++ APLP+HM ++WD L
Sbjct: 298 PHPEGG----------------RLQITAPLPAHMVKTWDSL 322
>gi|103487583|ref|YP_617144.1| pseudouridine synthase RluD [Sphingopyxis alaskensis RB2256]
gi|98977660|gb|ABF53811.1| ribosomal large subunit pseudouridine synthase C [Sphingopyxis
alaskensis RB2256]
Length = 405
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 26/152 (17%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+VVG P ++G I PL K G+ + +D ++++ TRY+VI
Sbjct: 174 RSAKKTYWAIVVGVPDIAQGEIDLPLAKQPGSGGEKMHV----HDSGLASK---TRYRVI 226
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT--------------HR 142
+ + W++L PLTGR HQLRVH A +G PIVGD KYG + R
Sbjct: 227 DRAGNSAAWVELQPLTGRTHQLRVHMA-AIGHPIVGDGKYGGKGAFLTGTISRKLHLHSR 285
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLES 174
+ + HP D + ++P HF L++
Sbjct: 286 RLRIDHPDGGVIDVSADVPD----HFAASLDA 313
>gi|92117127|ref|YP_576856.1| pseudouridine synthase RluD [Nitrobacter hamburgensis X14]
gi|91800021|gb|ABE62396.1| ribosomal large subunit pseudouridine synthase C [Nitrobacter
hamburgensis X14]
Length = 411
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 87/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G P+ +G IS L K + + D I + A HAVT Y V+
Sbjct: 250 RSARKIYWALVAGVPKPKQGRISTYLAK---EESEEDSIMRIAAHGDEGASHAVTYYAVV 306
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ S W+ L P+TGR HQLR H A + IVGD KY +K+
Sbjct: 307 ETSAQKLAWVSLKPVTGRTHQLRAHMAHI-DHAIVGDPKY---------------FNKE- 349
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N ++P GL Q RLHL + + +P+ +
Sbjct: 350 NWQLPG------GL----------QKRLHLLARRIVIPHPRGGV---------------- 377
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+ + APLP HM +SW++L
Sbjct: 378 IDVTAPLPPHMLQSWNLLG 396
>gi|407771062|ref|ZP_11118425.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285951|gb|EKF11444.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 365
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R N K + ++ YWA+V G P +G+I APL K GK
Sbjct: 166 TSGVLLLARSASAANALTKAFKDKTTRKLYWAIVTGAPDEREGLIDAPLAK---HGGKGG 222
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
V++ + SAQ T Y+ + + WL LSPLTGR HQLR HC + + PI+GD
Sbjct: 223 EKMVIDEKEGKSAQ---TIYRQLARAGRRAAWLALSPLTGRTHQLRAHC-QAIECPILGD 278
Query: 134 YKYG 137
KYG
Sbjct: 279 GKYG 282
>gi|395520657|ref|XP_003764442.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Sarcophilus harrisii]
Length = 310
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 34/183 (18%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV-----VNNDQIMS----- 85
R + + YWA+ VG P S G+I PL K V + ++T+ + N + M
Sbjct: 125 RQVAKKYWAICVGVPMHSAGMIDIPLIEKEVQGQQQHHKMTLAPSYRMENGKTMKIRPNR 184
Query: 86 -AQHAVTRYQVIKP--SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
A AVT+YQV+ SC ++L+L P+TG KHQLRVH A LG P++GD+KY
Sbjct: 185 HAHVAVTQYQVLSRTLSC---SFLELQPITGVKHQLRVHLAFGLGCPVLGDHKYS----- 236
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 202
W + P LS +++ EKT L LHLH +++ LP + Q+
Sbjct: 237 DWNKLAPQKLSSGILKKLGLEKTKTRHLP------------LHLHAQQLILPPLGSEKQE 284
Query: 203 VQL 205
+ L
Sbjct: 285 LNL 287
>gi|89053115|ref|YP_508566.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
gi|88862664|gb|ABD53541.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
Length = 354
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 87/204 (42%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIM---SAQHAVT 91
R ++ YWA V G+P G I L K G+++++ V D+I A+ A T
Sbjct: 175 RSTRKIYWAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVPVDEIAQVDGAKRAET 234
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ W L P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 235 DYAVMSNLGGRVCWCALVPITGRTHQLRAHMAEI-GHPIIGDGKYGGSG----------- 282
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
++ L G + G + + +LHLH + ++ + Q
Sbjct: 283 -----------QENLGDGWGAQLGGEISR--KLHLHARSLSFRHPMTGAQ---------- 319
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ LVAPLP HM ++WD L
Sbjct: 320 -----VNLVAPLPEHMAKTWDTLG 338
>gi|315121808|ref|YP_004062297.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495210|gb|ADR51809.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 336
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 95/219 (43%), Gaps = 55/219 (25%)
Query: 18 SSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V R R +++ YW+LV G P+ K IS L K G D
Sbjct: 154 TSGILVVARTRAAAQSLTESFRMRRIRKIYWSLVRGVPQNKKECISGWLFKKAKIGG--D 211
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ VV+ ++ A +A++ ++VI + + WL++ P TGR HQLRVH V G PIVGD
Sbjct: 212 YVQVVDQNE-KGAHYAISHFKVIDRFEYKFCWLEMQPYTGRTHQLRVHALHV-GHPIVGD 269
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY DS E + S I Q +L+LH + +
Sbjct: 270 KKY---------------RINDSKE-------------IFSNHI---QNKLYLHARYIDF 298
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWD 232
P+ L++ APLP HM ++WD
Sbjct: 299 PHPEGG----------------RLQITAPLPVHMAKTWD 321
>gi|114570313|ref|YP_756993.1| ribosomal large subunit pseudouridine synthase C [Maricaulis maris
MCS10]
gi|114340775|gb|ABI66055.1| ribosomal large subunit pseudouridine synthase C [Maricaulis maris
MCS10]
Length = 330
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV---NNDQIMSAQHAVTRYQVI 96
++ YWA+ +G P+ G I + K S+R T+V + D+ AQHA+TRY VI
Sbjct: 169 RKTYWAIAIGVPKPKMGEIKGFMRKAAASGVDSERETMVAAGHGDE--GAQHALTRYVVI 226
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
+ +W+ L P+TGR HQLRVH A +GT I+GD KY HR P DL +
Sbjct: 227 GEAGQKASWVALRPVTGRTHQLRVHLA-AMGTAILGDKKY--TCHRPA----PEDLGR 277
>gi|347526794|ref|YP_004833541.1| pseudouridine synthase [Sphingobium sp. SYK-6]
gi|345135475|dbj|BAK65084.1| pseudouridine synthase [Sphingobium sp. SYK-6]
Length = 447
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P + GVI PL K G+ V+ + M A+ +RY++I
Sbjct: 181 RTARKVYWAIVMGVPDVADGVIDLPLAKQPGTGGEK---MHVDEENGMPAR---SRYRII 234
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 235 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGK 276
>gi|308813053|ref|XP_003083833.1| pseudouridine synthase family protein (ISS) [Ostreococcus tauri]
gi|116055715|emb|CAL57800.1| pseudouridine synthase family protein (ISS) [Ostreococcus tauri]
Length = 476
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 29/136 (21%)
Query: 39 LQRWYWALVVGTPRCS--KGVISAPLGKVVVDNGKSDRITVV------------------ 78
+QR YWA+ P +G I APL +G+ D + +V
Sbjct: 256 IQRTYWAICANPPPRGTLEGWIDAPLADTDEGDGRGDNVRLVGGWRVYDVQNGDVIVGAG 315
Query: 79 -------NNDQIMSAQHAVTRYQVIKPSCH-GYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
N ++ +S++ A TR++V+ + G T L+L P+TGRKHQLRVH ++ L +PI
Sbjct: 316 EQEFARVNKEENVSSRAATTRFKVLASAGDDGPTLLELVPITGRKHQLRVHLSKALSSPI 375
Query: 131 VGDYKYGWQTHRK-WK 145
VGDYKYG+ +K W+
Sbjct: 376 VGDYKYGFTDKQKPWR 391
>gi|407776138|ref|ZP_11123427.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407280854|gb|EKF06421.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 367
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
++ YWA+V G P +G+I APL K+ GK V++ SAQ + ++ + +
Sbjct: 194 RKLYWAIVTGAPAEREGMIDAPLAKIA---GKGGEKMVIDEKLGKSAQ---SVFRQLHRA 247
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
WL LSPLTGR HQLRVHC E + PI+GD KYG
Sbjct: 248 GRKAAWLALSPLTGRTHQLRVHC-EAIECPILGDGKYG 284
>gi|158424148|ref|YP_001525440.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158331037|dbj|BAF88522.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 384
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+ ++ ++ ++ E R + YWALV G P+ +G IS L + + +
Sbjct: 204 CLLIAKNRLSAAQLAKNFRSREARKI---YWALVPGVPKPRQGRISTYLAREEAE----E 256
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ V + + A HAVT Y V++ + +WL L P+TGR HQ+R H A + PIVGD
Sbjct: 257 RMRVARHGE-EDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTHQIRAHLAHIH-HPIVGD 314
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY N E+P GL Q RLHL + + +
Sbjct: 315 PKY----------------FNIENWELPG------GL----------QNRLHLLARRLVI 342
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + DVS APLP HM +SW VL
Sbjct: 343 PH-------PRGEGMIDVS--------APLPPHMAQSWAVLG 369
>gi|406923072|gb|EKD60332.1| hypothetical protein ACD_54C00808G0002 [uncultured bacterium]
Length = 346
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 43/202 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS---AQHAVTRY 93
R+ ++ YWA V G P KG I L K G +++ V+ ++ A+ A T Y
Sbjct: 170 RLTRKIYWAAVAGVPHPRKGSIKYGLMKAGGGRGGDEKMICVHPAKMADFPEAKRAQTDY 229
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
V+ + +W+ L P+TGR HQLR H AE +G PI+GD KYG T
Sbjct: 230 FVLWFLGNRLSWMALEPVTGRTHQLRAHMAE-MGHPIIGDGKYGGGT------------- 275
Query: 154 KDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSK 213
E + G DL +LHLH + + V I K
Sbjct: 276 ---TENMGDGWGAGMGGDLSR--------KLHLHARML---KVQHPITK----------- 310
Query: 214 LETLKLVAPLPSHMQRSWDVLN 235
E + +APLP HMQR+W L+
Sbjct: 311 -EMMTWIAPLPEHMQRTWKTLD 331
>gi|217976287|ref|YP_002360434.1| RluA family pseudouridine synthase [Methylocella silvestris BL2]
gi|217501663|gb|ACK49072.1| pseudouridine synthase, RluA family [Methylocella silvestris BL2]
Length = 349
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 56/212 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS----------- 85
R Q+ YWALV G P+ ++G IS L K G R ++++ S
Sbjct: 167 RQAQKIYWALVEGVPKPAQGKISLFLAK---GEGMDARGPRRSDEERASMEKMRVAKHGD 223
Query: 86 --AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
AQH+VT Y + WL + P+TGR HQLR H AE +G PI+GD KYG +
Sbjct: 224 EDAQHSVTYYATVDTFSPRAAWLSMKPITGRTHQLRAH-AEAIGHPIIGDPKYGLRPKTD 282
Query: 144 WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKV 203
++ D IP+ +E+ +LHL + + LP+ +
Sbjct: 283 PRR-------NDPLRAIPE--------------TIER--KLHLLARRLVLPHPRGGV--- 316
Query: 204 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
L + APLP HM S++
Sbjct: 317 -------------LDVTAPLPPHMANSFETFG 335
>gi|427408845|ref|ZP_18899047.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
gi|425713155|gb|EKU76169.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
Length = 450
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P G+I P+ K G+ V+ ++ + A+ TRY+VI
Sbjct: 260 RTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEK---MHVDEEEGLPAR---TRYRVI 313
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH--------------R 142
+ + + W++L P TGR HQLRVH A +G P+VGD KYG + R
Sbjct: 314 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPLVGDGKYGGKDSFLSGSISRKMHLHAR 372
Query: 143 KWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSI 177
+ + HP D E+P+ + G DL G +
Sbjct: 373 RIRVDHPDGGRIDMKAELPEHFLNSLIALGFDLSLGDM 410
>gi|145355458|ref|XP_001421978.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582217|gb|ABP00272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 321
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 53/224 (23%)
Query: 43 YWALVVGTP-RCSK-GVISAPLGKVVVDNGKSDRITV----------------------- 77
YWAL P R ++ G I APL +V +G S V
Sbjct: 116 YWALTSNPPPRGARSGWIEAPLTEVGDGDGYSTARLVGGWRVYDAKGGGVVVGTGESMRD 175
Query: 78 -VNNDQIMSAQHAVTRYQVIKPSCH-GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 135
N+ +++ A+T ++V+ + G T L+L+P+TGRKHQLRVH A+ L +PI+GDYK
Sbjct: 176 KSNDAGSPASKAAMTHFKVLASAGEDGPTLLELTPITGRKHQLRVHLAKALSSPIIGDYK 235
Query: 136 YGWQTHRK-WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSI--LEKQPRLHLHCKEMT 192
YG+ R WK S + + ++ EK F L S+ + K P LHLH +
Sbjct: 236 YGFNDRRAPWK----SRFTDIESADVESEKESDFWRKLRRASLRGVSKIP-LHLHAR--- 287
Query: 193 LPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQ---RSWDV 233
A+Q V SG + ++VA P H R++D+
Sbjct: 288 ------ALQFVHPESGV------STRVVAEPPPHFAAALRAFDL 319
>gi|327282066|ref|XP_003225765.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Anolis carolinensis]
Length = 361
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 32/180 (17%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS----------- 85
R +++ YWA+ VG P+ ++G++ P+ + V++ +S + + MS
Sbjct: 172 RQVEKKYWAVCVGHPKPTEGLVDIPIVEKEVESHQSHFKMALAPNYYMSHEDGKTFKVRQ 231
Query: 86 ---AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
A AVTRY+V+ SC ++L+L P+TG KHQLRVH A LG PI+GD+KY
Sbjct: 232 HRDAHSAVTRYRVLS-SCSSCSFLELHPITGVKHQLRVHMAFGLGCPILGDHKYSH---- 286
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 202
W + P +++P+ GL+ L LHLH + LP ++ + +K
Sbjct: 287 -WNKLAP--------QKLPQSALKRLGLEQVKARYLP----LHLHAYTLILPEINGSGEK 333
>gi|114771239|ref|ZP_01448659.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2255]
gi|114548164|gb|EAU51051.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2255]
Length = 348
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 45/206 (21%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHA 89
+ R ++ YWA V G P G I L K NG +++ ++ ++ A+HA
Sbjct: 168 QSRETRKIYWAAVAGCPHPKIGTIKYGLIKAGGHGPNGSGEKMQCIHPSEVTDMPDAKHA 227
Query: 90 VTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP 149
T Y V++ +W+ L P+TGR HQLR H AE LG PIVGD KYG T
Sbjct: 228 TTDYTVLEDVGKRASWVALVPITGRTHQLRAHMAE-LGNPIVGDGKYGTNTQ-------- 278
Query: 150 SDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGC 209
+ D + G + G + + ++HLH + +T +
Sbjct: 279 ---TNDGD-----------GWGAQLGGDISR--KMHLHARSITFTH-------------- 308
Query: 210 DVSKLETLKLVAPLPSHMQRSWDVLN 235
++K E + + A LP HM+++W
Sbjct: 309 PITKKE-IHITAELPDHMEKTWTTFG 333
>gi|294011526|ref|YP_003544986.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
japonicum UT26S]
gi|292674856|dbj|BAI96374.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
japonicum UT26S]
Length = 436
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 32/162 (19%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P G+I P+ K G+ V+ ++ + ++ +RY+VI
Sbjct: 239 RTARKVYWAIVMGVPSIEDGMIELPIAKQPGTGGEK---MHVDEEEGLPSR---SRYRVI 292
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT--------------HR 142
+ + + W++L P TGR HQLRVH A +G PIVGD KYG + R
Sbjct: 293 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGKDAFLSGTISRKMHLHAR 351
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHF-------GLDLESGSI 177
+ + HP D E+P+ HF G DL +G +
Sbjct: 352 RIRVDHPDGGPVDVRAELPE----HFAASLASLGFDLSAGDL 389
>gi|407783138|ref|ZP_11130343.1| 23S rRNA pseudouridylate synthase [Oceanibaculum indicum P24]
gi|407203609|gb|EKE73595.1| 23S rRNA pseudouridylate synthase [Oceanibaculum indicum P24]
Length = 328
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 64/209 (30%)
Query: 29 YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 88
++ D EK YWA+ G P+ +G I P+ K+ GK ++ ++ +
Sbjct: 169 FRAKDAEK-----LYWAITAGIPKPREGRIDLPIAKL---PGKRGEKMDIDEEE---GKR 217
Query: 89 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 148
++T + V++ ++ + P+TGR HQLRVH + +GTPI GD KYG Q
Sbjct: 218 SITDFMVVEAVGKQAAFVAMRPVTGRTHQLRVHM-QAIGTPIQGDGKYGGQAA------- 269
Query: 149 PSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLS 206
L +G L + +LHLH +++TL PN
Sbjct: 270 -----------------------LLAGDGLSR--KLHLHARQITLKRPNG---------- 294
Query: 207 SGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+TL + APLP HM +SW
Sbjct: 295 --------KTLTVTAPLPPHMAQSWAFFG 315
>gi|390169265|ref|ZP_10221206.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
indicum B90A]
gi|389588128|gb|EIM66182.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
indicum B90A]
Length = 436
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 32/162 (19%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P G+I P+ K G+ V+ ++ + ++ +RY+VI
Sbjct: 239 RTARKVYWAIVMGVPSIEDGMIELPIAKQPGTGGEK---MHVDEEEGLPSR---SRYRVI 292
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT--------------HR 142
+ + + W++L P TGR HQLRVH A +G PIVGD KYG + R
Sbjct: 293 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGKDAFLSGTISRKMHLHAR 351
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHF-------GLDLESGSI 177
+ + HP D E+P+ HF G DL +G +
Sbjct: 352 RIRVDHPDGGRVDVRAELPE----HFAASLASLGFDLSAGDL 389
>gi|381203577|ref|ZP_09910683.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 456
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P G+I P+ K G+ V+ ++ + A+ TRY+VI
Sbjct: 266 RTARKVYWAIVIGVPSIDDGMIELPITKQPGTGGEK---MHVDEEEGLPAR---TRYRVI 319
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH--------------R 142
+ + + W++L P TGR HQLRVH A +G P+VGD KYG + R
Sbjct: 320 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPLVGDGKYGGKDSFLSGSISRKMHLHAR 378
Query: 143 KWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSI 177
+ + HP D E+P+ + G DL G +
Sbjct: 379 RIRVDHPDGGRIDMKAELPEHFLNSLVALGFDLSLGDM 416
>gi|254436973|ref|ZP_05050467.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198252419|gb|EDY76733.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 347
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 86/205 (41%), Gaps = 46/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD--RITVV---NNDQIMSAQHAVT 91
R ++ YWALV G P G + L K GK D R+ V + D+ A+ A+T
Sbjct: 168 RNTEKIYWALVAGVPIPKLGSVKYGLVKQGGHGGKGDNERMKCVHPKDVDKTFGAKRALT 227
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ W+ L+P+TGR HQLR H AE+ G PIVGD KYG Q Q +P D
Sbjct: 228 NYTVLTSLADRTAWVALTPVTGRTHQLRAHMAEI-GHPIVGDGKYGAQA----VQDNPGD 282
Query: 152 -LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
EEI + +LHLH + + + +
Sbjct: 283 GWGAGMGEEIGR--------------------KLHLHARSLRIEHPETG----------- 311
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
+ L + A LP HM ++W
Sbjct: 312 ----KELWIKASLPPHMGKTWSFFG 332
>gi|398384716|ref|ZP_10542744.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
gi|397721996|gb|EJK82541.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
Length = 447
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P + G+I P+ K G+ V+ + + A+ TRY+VI
Sbjct: 257 RTARKVYWAIVIGVPSINDGMIELPIAKQPGTGGEK---MHVDEAEGLPAR---TRYRVI 310
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH--------------R 142
+ + + W++L P TGR HQLRVH A +G P+VGD KYG + R
Sbjct: 311 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPLVGDGKYGGKESFLSGSISRKMHLHAR 369
Query: 143 KWKQFHPSDLSKDSNEEIPK---EKTLHFGLDLESGSI 177
+ + HP D E+P+ + G DL G +
Sbjct: 370 RIRVDHPDGGRIDVKAELPEHFLASLVSLGFDLSLGDM 407
>gi|402849245|ref|ZP_10897485.1| Ribosomal large subunit pseudouridine synthase C [Rhodovulum sp.
PH10]
gi|402500558|gb|EJW12230.1| Ribosomal large subunit pseudouridine synthase C [Rhodovulum sp.
PH10]
Length = 637
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 85/203 (41%), Gaps = 60/203 (29%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWAL G P+ +G IS L K + RI + A HAVT Y V+
Sbjct: 475 RETRKIYWALAAGVPKPKQGRISTFLAKEEREEESFMRIAKHGEE---GAIHAVTYYAVV 531
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY----GWQTHRKWKQFHPSDL 152
+ + WL L P+TGR HQLR H A + G PIVGD KY WQ
Sbjct: 532 ETAAQRLAWLSLKPVTGRTHQLRAHLAHI-GHPIVGDPKYFSIENWQ------------- 577
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
+P G I Q RLHL + + +P+
Sbjct: 578 -------LP-------------GGI---QNRLHLMARRLVIPH----------------P 598
Query: 213 KLETLKLVAPLPSHMQRSWDVLN 235
+ T+ + APLP HM +S+++L
Sbjct: 599 RGGTIDVTAPLPPHMVQSFNLLG 621
>gi|354594043|ref|ZP_09012086.1| hypothetical protein CIN_07820 [Commensalibacter intestini A911]
gi|353673154|gb|EHD14850.1| hypothetical protein CIN_07820 [Commensalibacter intestini A911]
Length = 325
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 85/198 (42%), Gaps = 54/198 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ YWA+ P G I PL KV NG N + AQ A+T Y+V
Sbjct: 167 RDMKKTYWAITTRRPSPLSGRIDLPLLKVEYQNGSHIEAADAKNKE---AQRAITEYEVK 223
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++L PLTGR HQLRVHCAE + PI+GD KY
Sbjct: 224 DFAARKLALVELYPLTGRMHQLRVHCAE-MKAPILGDKKY-------------------- 262
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
N+E+P +D S RLHLH +++ +P+ S
Sbjct: 263 NKEMP-------FMDGFSQ-------RLHLHARQLDMPHPSGG----------------R 292
Query: 217 LKLVAPLPSHMQRSWDVL 234
L + A LP HM+ +++ L
Sbjct: 293 LLVEAALPPHMKETFEHL 310
>gi|254449547|ref|ZP_05062984.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
gi|198263953|gb|EDY88223.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
Length = 347
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 86/205 (41%), Gaps = 46/205 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD--RITVV---NNDQIMSAQHAVT 91
R ++ YWALV G P G I L K GK D R+ V + D+ A+ A+T
Sbjct: 168 RNTEKIYWALVAGVPIPKLGSIKYGLVKQGGHGGKGDNERMKCVHPKDVDKTFGAKRALT 227
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ W+ L+P+TGR HQLR H AE+ G PIVGD KYG Q +P D
Sbjct: 228 NYTVLTSLADRTAWVALTPVTGRTHQLRAHIAEI-GHPIVGDGKYGAAA----VQDNPGD 282
Query: 152 -LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
EEI + +LHLH + + + +
Sbjct: 283 GWGAGMGEEIGR--------------------KLHLHARSLRIEHPETG----------- 311
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
+ L + A LP HM+++W
Sbjct: 312 ----KELWIKASLPQHMEKTWGFFG 332
>gi|426400547|ref|YP_007019519.1| RluA family pseudouridine synthase [Candidatus Endolissoclinum
patella L2]
gi|425857215|gb|AFX98251.1| pseudouridine synthase, RluA family protein [Candidatus
Endolissoclinum patella L2]
Length = 348
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 9/98 (9%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPS 99
+ Y ALV+G P+ + G I+ P+ KV N S+++ V + +HA+TRY + K S
Sbjct: 192 KIYLALVIGEPKPAIGQINLPIAKVA--NKVSEKMMV----DYENGKHALTRYSTLEKLS 245
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
CH T + L P+TGR HQLRVH A + GTPI+GD KYG
Sbjct: 246 CH-ITLVALFPVTGRTHQLRVHMAGI-GTPILGDSKYG 281
>gi|334343948|ref|YP_004552500.1| RluA family pseudouridine synthase [Sphingobium chlorophenolicum
L-1]
gi|334100570|gb|AEG47994.1| pseudouridine synthase, RluA family [Sphingobium chlorophenolicum
L-1]
Length = 432
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 32/162 (19%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V+G P G++ P+ K G+ V+ ++ + ++ +RY+VI
Sbjct: 235 RTARKVYWAIVMGVPSIEDGMVELPIAKQPGTGGEK---MHVDEEEGLPSR---SRYRVI 288
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT--------------HR 142
+ + + W++L P TGR HQLRVH A +G PIVGD KYG + R
Sbjct: 289 ERAGNRAAWVELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGKEAFLSGTISRKMHLHAR 347
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHF-------GLDLESGSI 177
+ + HP D E+P+ HF G DL +G +
Sbjct: 348 RIRVDHPDGGRVDVRAELPE----HFAASLASLGFDLSTGDL 385
>gi|154253208|ref|YP_001414032.1| RluA family pseudouridine synthase [Parvibaculum lavamentivorans
DS-1]
gi|154157158|gb|ABS64375.1| pseudouridine synthase, RluA family [Parvibaculum lavamentivorans
DS-1]
Length = 330
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 79/196 (40%), Gaps = 53/196 (27%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
Q+ YWALVVG P +G I L K +++R+ A+ AVT + + +
Sbjct: 173 QKIYWALVVGVPVPRQGTIDLALSKQ--GGPRAERVFAAKRGD-EGARDAVTHFSTVSTA 229
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
H W+ PLTGR HQ+R H A + TPIVGD KYG HP E
Sbjct: 230 AHTLAWVAFMPLTGRTHQIRAHAAAIE-TPIVGDGKYGGVN------AHPGG-------E 275
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
IP+ +LHLH + + + + L +
Sbjct: 276 IPR--------------------KLHLHARSIDIAHPDGG----------------RLHV 299
Query: 220 VAPLPSHMQRSWDVLN 235
A LP HM+ SW +L
Sbjct: 300 EADLPPHMKTSWKLLG 315
>gi|154248685|ref|YP_001419643.1| RluA family pseudouridine synthase [Xanthobacter autotrophicus Py2]
gi|154162770|gb|ABS69986.1| pseudouridine synthase, RluA family [Xanthobacter autotrophicus
Py2]
Length = 364
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 91/200 (45%), Gaps = 55/200 (27%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+V G P+ +G IS L + ++ + R+ D+ A HA+T Y V+
Sbjct: 204 REARKVYWAVVPGVPKPKQGRISTYLARD--EDEEKMRVARHGEDE---ASHAITYYAVV 258
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +WL L P+TGR HQLR H A + G PIVGD KY D+
Sbjct: 259 DQAAQKMSWLSLKPVTGRTHQLRAHLAHI-GHPIVGDPKY-------------FDI---E 301
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV-SQAIQKVQLSSGCDVSKLE 215
N E+P GL Q RLHL + + +P+ Q + DVS
Sbjct: 302 NWELPG------GL----------QNRLHLLARRLVIPHPRGQGL--------IDVS--- 334
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
APLP HM +S+ VL
Sbjct: 335 -----APLPHHMAQSFAVLG 349
>gi|440796370|gb|ELR17479.1| RNA pseudouridine synthase, putative [Acanthamoeba castellanii str.
Neff]
Length = 509
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 43/160 (26%)
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
+ V N Q A+ AVTRY+ + + ++++L P TGRKHQLRVHCAEVL PI+GD
Sbjct: 326 MGVAANMQDEGAKMAVTRYETRADATNEVSFVELWPWTGRKHQLRVHCAEVLKAPILGDD 385
Query: 135 KYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
KYG +E F L +L+ LHLHC+ + +P
Sbjct: 386 KYGS-----------------------REAFDRFEL------MLDNIDNLHLHCRSLEIP 416
Query: 195 NVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
+ + Q+ L++VA P++ +R+ D
Sbjct: 417 HPIKENQR--------------LRIVAAPPTYFRRTMDTF 442
>gi|94497617|ref|ZP_01304185.1| pseudouridylate synthase, partial [Sphingomonas sp. SKA58]
gi|94422834|gb|EAT07867.1| pseudouridylate synthase [Sphingomonas sp. SKA58]
Length = 394
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV+G P G+I P+ K G+ V+ ++ + A+ +RY+VI
Sbjct: 256 RTARKVYWALVMGVPSIEDGMIELPIAKQPGTGGEK---MHVDEEEGLPAR---SRYRVI 309
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ + + W++L P TGR HQLRVH A +G PIVGD KYG +
Sbjct: 310 ERAGNRAAWIELQPYTGRTHQLRVHMA-AIGHPIVGDGKYGGK 351
>gi|372278301|ref|ZP_09514337.1| ribosomal large subunit pseudouridine synthase C [Oceanicola sp.
S124]
Length = 350
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 85/201 (42%), Gaps = 45/201 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P G I L K G+ +++ V+ I S A+ AV+
Sbjct: 169 RETRKIYWALVAGVPHPYMGTIKFGLVKAPGHGSGGEGEKMICVHPRDIESTPGAKRAVS 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ W+ L P+TGR HQLR H AE+ G P++GD KYG +
Sbjct: 229 DYSVLWRLGQRAAWVGLVPVTGRTHQLRAHMAEI-GHPMIGDGKYGGSS----------- 276
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
++ L G + G + ++ LH T P + ++
Sbjct: 277 -----------QENLGDGWGAQLGGEISRKLHLHARLLRFTHPFTGKPVE---------- 315
Query: 212 SKLETLKLVAPLPSHMQRSWD 232
L APLP HM+RSWD
Sbjct: 316 -------LEAPLPEHMKRSWD 329
>gi|375006357|ref|YP_004975141.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357427615|emb|CBS90560.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 235
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA+ G P GVI PL K + T++ + + Q AVT Y+V+
Sbjct: 92 VEKTYWAVADGIPDAESGVIDLPLLKRIEPGASRSSWTILPDP---AGQPAVTEYRVLGT 148
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G +WL+L P TGR HQ+RVHCA + G P+VG+ YG
Sbjct: 149 GADGRSWLELRPRTGRTHQIRVHCAAI-GCPLVGEPFYG 186
>gi|294675889|ref|YP_003576504.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
capsulatus SB 1003]
gi|294474709|gb|ADE84097.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
capsulatus SB 1003]
Length = 355
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 88/204 (43%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNN---DQIMSAQHAVT 91
+ ++ YWA V G P KG I L K G+ +++ ++ D A+ A T
Sbjct: 177 KTTRKIYWAAVAGVPSPKKGTIRYGLVKAPGHGRGGEGEKMLCIHPSKVDATPDAKRATT 236
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ VI +W+ L P+TGR HQLR H AE LG PIVGD KYG
Sbjct: 237 DFAVIDGLGSRVSWVGLVPITGRTHQLRAHMAE-LGHPIVGDGKYG-------------- 281
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + + +LHLH + ++ I K +++
Sbjct: 282 ---GSGQE-----NLGDGWGSQLGGEISR--KLHLHARTISF---DHPITKKRIT----- 323
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
L APLP HM R+W L
Sbjct: 324 -------LTAPLPDHMVRTWKTLG 340
>gi|145518940|ref|XP_001445342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|31746352|emb|CAD97486.1| pseudouridine synthase [Paramecium tetraurelia]
gi|124412786|emb|CAK77945.1| unnamed protein product [Paramecium tetraurelia]
Length = 350
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 18/168 (10%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTR 92
EK + + Y A+V G + KG+I PL + N + + T N +Q++ ++ A T
Sbjct: 172 EKAFITKKYIAVVQGQIKVQKGLIDRPL----LFNTNNQKQTCYNEEQLLEGKYLPARTS 227
Query: 93 YQVIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP 149
Y+VI+ + Y+ L L GRKHQ+R H ++VL TPI+ D KYG+Q + +
Sbjct: 228 YEVIEEYQYQDEMYSILDLQIFEGRKHQIRAHLSQVLNTPILFDQKYGFQFTKTNRDLQT 287
Query: 150 SDLSKDSNEEIPKEKTL--HFGLDLE-------SGSILEKQPRLHLHC 188
S +D + ++ + +F +D+ +G+I++K +L +
Sbjct: 288 SIFGEDQGIMLQAKRIVFQNFPVDINESFYQNSNGTIIQKNGKLEIEA 335
>gi|346991289|ref|ZP_08859361.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TW15]
Length = 347
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 89/210 (42%), Gaps = 57/210 (27%)
Query: 37 RILQRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRITVVNNDQIM---SAQ 87
R Q+ YWALV G P G++ AP GK G+ +++ V+ ++ A+
Sbjct: 169 RNTQKIYWALVAGVPTPYLGEIKTGLVKAPGHGK----QGEGEKMIAVHPSEVNDTPGAK 224
Query: 88 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
A T Y + W+ + P+TGR HQLR H A +G PI+GD KYG
Sbjct: 225 RAHTLYATLYRVAGRAAWVAMEPVTGRTHQLRAHMA-AIGHPIIGDGKYG---------- 273
Query: 148 HPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQL 205
S +E L G + G I+ K +LHLH + ++ P + I
Sbjct: 274 -------GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLSFEHPETRKPIT---- 315
Query: 206 SSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ APLP HM+ SWD L
Sbjct: 316 -------------ITAPLPDHMKHSWDTLG 332
>gi|344923106|ref|ZP_08776567.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 323
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 16/128 (12%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
IA S + T +KD EK YWA+ +G PR G++ APL K V G +
Sbjct: 155 VIAKKSDMATHLTQQFKDGKVEK-----IYWAVTLGQPRPGSGILKAPLIKAGV--GDKE 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIK----PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTP 129
++ V + + A+T YQ +K P W++L P TGR HQLRVHC L P
Sbjct: 208 KVVV----DFETGKPAITVYQTLKRLEKPRLPYMAWVELKPQTGRTHQLRVHCVH-LDAP 262
Query: 130 IVGDYKYG 137
I+GD KYG
Sbjct: 263 ILGDGKYG 270
>gi|56695430|ref|YP_165778.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
gi|56677167|gb|AAV93833.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
Length = 347
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVNN---DQIMSAQHAVT 91
R ++ YWALV G P G I L K G+ +++ VV+ D A+ A T
Sbjct: 169 RNTRKIYWALVAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVHLSELDATPGAKRAHT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + +W+ + P+TGR HQLR H A + G PI+GD KYG
Sbjct: 229 YYATLYRVAGRASWVAMEPVTGRTHQLRAHMAGI-GHPIIGDGKYGGSG----------- 276
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
++ L G + G I+ K +LHLH + ++ + S
Sbjct: 277 -----------QENLGDGWGAQLGGIISK--KLHLHARSLSFEHPSTR------------ 311
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM+ SWD
Sbjct: 312 ---KKVTFTAPLPEHMRESWDTFG 332
>gi|113931514|ref|NP_001039205.1| RNA pseudouridylate synthase domain-containing protein 4 [Xenopus
(Silurana) tropicalis]
gi|123892314|sp|Q28C59.1|RUSD4_XENTR RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|89268931|emb|CAJ83700.1| RNA pseudouridylate synthase domain containing 4 [Xenopus
(Silurana) tropicalis]
Length = 324
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 46/192 (23%)
Query: 23 TVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK------------------ 64
ERV + E + R YWAL +GTP +G++ P+ +
Sbjct: 120 AAERVQQALRERE---VHRVYWALCLGTPSPREGILDIPIMEKETSGPQKHYKMALSPRF 176
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
V + G +R+ V SA AVTRY+ + + G + ++L P+TG KHQLRVH A
Sbjct: 177 RVSEEGAVERVRVPR-----SAHEAVTRYRTLG-AASGASLVELHPITGVKHQLRVHLAL 230
Query: 125 VLGTPIVGDYKYG-WQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPR 183
L PI+GD+KY W R Q P + + +P+ +TL
Sbjct: 231 GLNCPILGDHKYSHWG--RLAPQKPPDSVLRALGLTVPQARTLS---------------- 272
Query: 184 LHLHCKEMTLPN 195
LHLH ++TLP+
Sbjct: 273 LHLHAVQLTLPS 284
>gi|403386611|ref|ZP_10928668.1| RluA family pseudouridine synthase [Clostridium sp. JC122]
Length = 306
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y+ALV G + GVI AP+G+ V+ K + VV N +HAVT Y+VI+
Sbjct: 166 ITRTYYALVEGVIKTDSGVIDAPIGRHPVERIK---MAVVKN-----GKHAVTHYEVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 153
GYT +K + TGR HQ+RVH + + G P++GD YG++ + + + H DL
Sbjct: 217 RFKGYTLVKCNLETGRTHQIRVHMSHI-GHPLLGDEVYGFKKQKFKLQGQALHAKDLG 273
>gi|84499811|ref|ZP_00998099.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
gi|84392955|gb|EAQ05166.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
Length = 347
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 80/198 (40%), Gaps = 45/198 (22%)
Query: 43 YWALVVGTP-----RCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
YWALV G P G++ AP + K + + A+ A T Y +
Sbjct: 175 YWALVAGVPTPYLGEIRYGLVKAPGHGKGGEGEKMIAVHPAEVEGTPGAKRAHTLYATLY 234
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSN 157
+W+ L PLTGR HQLR H AE+ G PI+GD KYG S
Sbjct: 235 RVASRASWVALEPLTGRTHQLRAHLAEI-GHPIIGDGKYG-----------------GSG 276
Query: 158 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL 217
+E L G + G I+ + +LHLH + MT + + +
Sbjct: 277 QE-----NLGDGWGAQLGGIISR--KLHLHARSMTFEHPVTG---------------KPV 314
Query: 218 KLVAPLPSHMQRSWDVLN 235
+ APLP HM SWD L
Sbjct: 315 TVTAPLPDHMAESWDTLG 332
>gi|402820828|ref|ZP_10870391.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
gi|402510331|gb|EJW20597.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
Length = 329
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWALV G PR +G I L K +G ++R+ D + A A+TR+ V+
Sbjct: 168 RETRKIYWALVHGVPRPEQGDIKLKLVKRAAGDG-NERVRPAE-DHDIDAMRAITRFSVV 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++W+ P+TGR HQ+R H A +G P+VGD KY
Sbjct: 226 GRAGQVFSWVAFMPITGRTHQIRAH-ALAIGHPLVGDNKYA------------------- 265
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
+P ++E+G L +LHLH + + +P+ S
Sbjct: 266 ---LP---------EIEAGGELPN--KLHLHARMIDMPHPSGG----------------R 295
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L + A L +HM SW +L
Sbjct: 296 LTVAADLQAHMAESWGLLG 314
>gi|384921230|ref|ZP_10021218.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
gi|384464864|gb|EIE49421.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
Length = 352
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 45/198 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVTRYQVIK 97
YWA+V G P G I L K G+++++ V+ I + A+ A T Y +
Sbjct: 180 YWAVVAGVPTPYLGEIRYGLVKARGHGKGGEAEKMVCVHPRDIGTTEGAKRAHTLYATLY 239
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSN 157
+W+ L PLTGR HQLR H AE+ G PI+GD KYG S
Sbjct: 240 RVASRASWVALEPLTGRTHQLRAHMAEI-GHPIIGDGKYG-----------------GSG 281
Query: 158 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL 217
+E + G + G ++ K +LHLH + M+ + +T+
Sbjct: 282 QE-----NMGDGWGAQLGGVISK--KLHLHARSMSFEHPRTR---------------KTI 319
Query: 218 KLVAPLPSHMQRSWDVLN 235
+ APLP HM+ +WD
Sbjct: 320 TVTAPLPDHMKHTWDTFG 337
>gi|308321724|gb|ADO28005.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
furcatus]
Length = 386
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 47/194 (24%)
Query: 23 TVERV--MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAP----------------LGK 64
T ER+ + + + EKR Y + VG P S+GVI P L
Sbjct: 189 TAERIHNLIRSHQAEKR-----YMVITVGVPVPSEGVIDIPIIEKEVMGDQHHFKMGLSP 243
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
+ + D + V ++ AQ AVTRY+V+ S G + ++ P+TG KHQLRVH A
Sbjct: 244 LYRPTEEGDGLVRVRANR--QAQSAVTRYKVLD-SSSGCSLVEFQPVTGVKHQLRVHMAL 300
Query: 125 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKE--KTLHFGLDLESGSILEKQP 182
L PI+GD+KY W + P L + + E KT HF
Sbjct: 301 ALACPILGDHKYS-----HWNKLAPQKLPEGVLRRLGLEQSKTRHFP------------- 342
Query: 183 RLHLHCKEMTLPNV 196
LHLH +++TLP V
Sbjct: 343 -LHLHVRQITLPGV 355
>gi|255073601|ref|XP_002500475.1| predicted protein [Micromonas sp. RCC299]
gi|226515738|gb|ACO61733.1| predicted protein [Micromonas sp. RCC299]
Length = 327
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 89/210 (42%), Gaps = 54/210 (25%)
Query: 39 LQRWYWALVVGTPR-CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
++R YWALV T S+G I A L V G V A+ A T Y+VI
Sbjct: 125 VRRVYWALVSATSTLASRGTIDAAL--VTTHAG-------VTLKPGAGAKPAATDYEVIS 175
Query: 98 --------PSCHGY--TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK---- 143
P+ G L L P TGRKHQLRVHCA L IVGDYKYG++ +
Sbjct: 176 RASPDSCAPTAAGRVPAVLALVPRTGRKHQLRVHCAGALDAAIVGDYKYGYRDVSRTGGV 235
Query: 144 ---WKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH--CKEMTLPNVSQ 198
W++ D+ + S + T G + LHLH C E T P
Sbjct: 236 ADDWRRVL-RDIDERSTRRLNDAGT-------ADGEVRGAGVPLHLHARCVEFTHP---- 283
Query: 199 AIQKVQLSSGCDVSKLETLKLVAPLPSHMQ 228
SSG E +++VAP PSHM
Sbjct: 284 -------SSG------ERVRVVAPAPSHMS 300
>gi|254419979|ref|ZP_05033703.1| pseudouridine synthase, RluA family [Brevundimonas sp. BAL3]
gi|196186156|gb|EDX81132.1| pseudouridine synthase, RluA family [Brevundimonas sp. BAL3]
Length = 341
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWA+V+G P+ G I PL K +++ + R + + A+ A T +
Sbjct: 178 RRQAKKTYWAIVIGNPKPYSGQIDMPLKKTGINDFEMMRPADRKDPK---AEPAETAFST 234
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
I + H W+ L P TGR HQLR H A + G PI+GD KYG + R+
Sbjct: 235 ISRASHRAAWMALRPFTGRTHQLRAHMAGI-GHPILGDPKYGDEKSRE 281
>gi|414342374|ref|YP_006983895.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans H24]
gi|411027709|gb|AFW00964.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans H24]
Length = 243
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 13/126 (10%)
Query: 16 AVSSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
A +SG + + R ++ + R +++ YW +V GTP ++G ISAPL + N
Sbjct: 81 ADTSGCLLIARRKTALLEAQAAFQNRQVRKLYWTIVEGTPAENEGEISAPL--LRQSNPS 138
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
R+ V AVTR++V+ +G +WL+L LTGR HQ R+HCA LGTPIV
Sbjct: 139 GWRMIVDPK-----GDAAVTRWRVLG-RANGRSWLELELLTGRTHQARIHCAS-LGTPIV 191
Query: 132 GDYKYG 137
GD YG
Sbjct: 192 GDRVYG 197
>gi|99034362|ref|ZP_01314387.1| hypothetical protein Wendoof_01000811, partial [Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24]
Length = 264
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I R Y + + R +++ Y AL G P G I PL K V +
Sbjct: 98 TSGVIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSG--QE 155
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V N S Q+A T + +I S H +LKL P+TGR HQLR H A + PI+GD
Sbjct: 156 KVVVDEN----SPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGD 210
Query: 134 YKYGWQ 139
KYG +
Sbjct: 211 GKYGGK 216
>gi|58698525|ref|ZP_00373428.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila ananassae]
gi|225630144|ref|YP_002726935.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia sp. wRi]
gi|225677282|ref|ZP_03788264.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|58534967|gb|EAL59063.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila ananassae]
gi|225590674|gb|EEH11919.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225592125|gb|ACN95144.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia sp. wRi]
Length = 307
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I R Y + + R +++ Y AL G P G I PL K V +
Sbjct: 141 TSGVIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSG--QE 198
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V N S Q+A T + +I S H +LKL P+TGR HQLR H A + PI+GD
Sbjct: 199 KVVVDEN----SPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGD 253
Query: 134 YKYGWQ 139
KYG +
Sbjct: 254 GKYGGK 259
>gi|374998032|ref|YP_004973531.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357425457|emb|CBS88343.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 226
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ + YWA+V G P G I PL KV + K+ +V + Q AVT Y V++
Sbjct: 88 VDKTYWAVVAGAPPQESGRIELPLAKV---SNKTGGWRIVGSPD---GQTAVTDY-VVRG 140
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G TWL+L+P TGR HQ+RVHCA + G P+VGD +YG
Sbjct: 141 QADGLTWLELTPHTGRTHQIRVHCASI-GCPLVGDPQYG 178
>gi|42520290|ref|NP_966205.1| ribosomal large subunit pseudouridine synthase C [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410028|gb|AAS14139.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila melanogaster]
Length = 307
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I R Y + + R +++ Y AL G P G I PL K V +
Sbjct: 141 TSGVIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSG--QE 198
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V N S Q+A T + +I S H +LKL P+TGR HQLR H A + PI+GD
Sbjct: 199 KVVVDEN----SPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGD 253
Query: 134 YKYGWQ 139
KYG +
Sbjct: 254 GKYGGK 259
>gi|410944386|ref|ZP_11376127.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
frateurii NBRC 101659]
Length = 257
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 13/126 (10%)
Query: 16 AVSSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
A +SG + + R ++ + R +++ YW +V GTP +G ISAPL + N
Sbjct: 95 ADTSGCLLIARRKTALLEAQAAFQSRQVRKLYWTVVEGTPTDDEGEISAPL--LRQSNPS 152
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
R+ V + AVTR++V+ G +WL+L LTGR HQ R+HCA LGTPIV
Sbjct: 153 GWRMIVDPKGDV-----AVTRWRVLG-RAEGRSWLELELLTGRTHQARIHCAS-LGTPIV 205
Query: 132 GDYKYG 137
GD YG
Sbjct: 206 GDRVYG 211
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 41/196 (20%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD- 73
+A S + R+++K R +++ YWA+ VG+P ++G++ P+ + V + +
Sbjct: 507 LARSREVADRIRLLFK-----TRQVEKIYWAISVGSPDPAEGIVEIPMVEREVQSHQPHY 561
Query: 74 RITVVNNDQI-------------MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRV 120
++T+ N ++ +A++AVTRY+V+ S + L+L P+TG KHQLRV
Sbjct: 562 KMTLAPNYRMSPEDGKVLKIRKNRNAENAVTRYRVLATSS-ACSLLELQPITGVKHQLRV 620
Query: 121 HCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE--EIPKEKTLHFGLDLESGSIL 178
H A LG PI+GD+KY W + P L + + + ++ + K+ H
Sbjct: 621 HLAYGLGCPILGDHKYS-----HWSKLAPQKLPEITLKRLKLQQSKSRHLP--------- 666
Query: 179 EKQPRLHLHCKEMTLP 194
LHLH ++LP
Sbjct: 667 -----LHLHAYRLSLP 677
>gi|347758850|ref|YP_004866412.1| RluA family pseudouridine synthase protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591368|gb|AEP10410.1| pseudouridine synthase, RluA family protein [Micavibrio
aeruginosavorus ARL-13]
Length = 362
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 46/201 (22%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R ++++YWAL P+ + GVI APL + G + +V+ + + + + T +Q
Sbjct: 193 EGRNIRKYYWALTAPAPQMNDGVIDAPL---IKGEGPYKDMMIVDAE---NGKFSRTEFQ 246
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
VI+ + ++ P TGR HQ+RVH AE G P++GD KYG
Sbjct: 247 VIERAGPAAAFVMFWPRTGRTHQIRVHAAEG-GFPLIGDEKYG---------------HA 290
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
D ++ + +H + PRLHLH + +P+ ++
Sbjct: 291 DPEKDDARINMIH---------DMNLAPRLHLHAWRIVVPHPTRK--------------- 326
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+++ APL +++SW +
Sbjct: 327 GMIEVTAPLADDLRKSWKAFD 347
>gi|429207722|ref|ZP_19198978.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
gi|428189115|gb|EKX57671.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
Length = 349
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P +G I L K G+ +++ ++ ++ A+ A T
Sbjct: 172 RNTRKIYWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQT 231
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ + W+ LSP+TGR HQLR H AE LG PIVGD KYG
Sbjct: 232 DFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG-------------- 276
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + + +LHLH + +T + I+K
Sbjct: 277 ---GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT---IEHPIKK--------- 314
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM ++W +L+
Sbjct: 315 ---DLVTFTAPLPGHMAKTWKLLD 335
>gi|77462289|ref|YP_351793.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332560170|ref|ZP_08414492.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
gi|77386707|gb|ABA77892.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332277882|gb|EGJ23197.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
Length = 346
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P +G I L K G+ +++ ++ ++ A+ A T
Sbjct: 169 RNTRKIYWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ + W+ LSP+TGR HQLR H AE LG PIVGD KYG
Sbjct: 229 DFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG-------------- 273
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + + +LHLH + +T + I+K
Sbjct: 274 ---GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT---IEHPIKK--------- 311
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM ++W +L+
Sbjct: 312 ---DLVTFTAPLPGHMAKTWKLLD 332
>gi|302845024|ref|XP_002954051.1| pseudouridine synthase mitochondrial precursor [Volvox carteri f.
nagariensis]
gi|300260550|gb|EFJ44768.1| pseudouridine synthase mitochondrial precursor [Volvox carteri f.
nagariensis]
Length = 955
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 66/125 (52%), Gaps = 22/125 (17%)
Query: 17 VSSGIITVERVMYKDNDNEKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDR 74
V G + + R D E + R YWA + G PR S G +S P VVVD
Sbjct: 765 VGPGGLALNRDERVGRDGEMPAIHRTYWAFLAGDLQPRQS-GRVSLP---VVVDG----- 815
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
++ AVT Y+V C G +W++L+P TGR+HQLR+HCA LG PI+GD
Sbjct: 816 --------VLCP--AVTAYRVKATGC-GVSWVELTPETGRRHQLRIHCARKLGAPIIGDG 864
Query: 135 KYGWQ 139
+YG++
Sbjct: 865 RYGYR 869
>gi|126461165|ref|YP_001042279.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17029]
gi|126102829|gb|ABN75507.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17029]
Length = 346
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P +G I L K G+ +++ ++ ++ A+ A T
Sbjct: 169 RNTRKIYWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ + W+ LSP+TGR HQLR H AE LG PIVGD KYG
Sbjct: 229 DFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG-------------- 273
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + + +LHLH + +T + I+K
Sbjct: 274 ---GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT---IEHPIKK--------- 311
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM ++W +L+
Sbjct: 312 ---DLVTFTAPLPGHMAKTWKLLD 332
>gi|353328603|ref|ZP_08970930.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont wVitB of Nasonia vitripennis]
Length = 307
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 61/221 (27%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I R Y + + R +++ Y AL G P G+I PL K + +
Sbjct: 141 TSGVIIFARNASVARYLMEEFKGRRIKKTYLALTSGIPSKDNGIIDYPLVKKYISGQEK- 199
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
V++ D S Q+A T + +I H +LKL P+TGR HQLR H A + PI+GD
Sbjct: 200 --VVIDED---SPQNATTHFSIISRLKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGD 253
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KYG + K F ++ Q LH H + L
Sbjct: 254 GKYGGK-----KAFIDGVVN---------------------------QIHLHSHSLSLKL 281
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
PN + + + AP+P H+++S +VL
Sbjct: 282 PNNKE------------------ITITAPIPRHIEKSIEVL 304
>gi|221638143|ref|YP_002524405.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
gi|221158924|gb|ACL99903.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
Length = 343
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P +G I L K G+ +++ ++ ++ A+ A T
Sbjct: 166 RNTRKIYWALVAGVPSPKQGSIKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQT 225
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ + W+ LSP+TGR HQLR H AE LG PIVGD KYG
Sbjct: 226 DFFTLWFLGSRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYG-------------- 270
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + + +LHLH + +T + I+K
Sbjct: 271 ---GSGQE-----NLGDGWGAQIGGEMSR--KLHLHARSLT---IEHPIKK--------- 308
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM ++W +L+
Sbjct: 309 ---DLVTFTAPLPGHMAKTWKLLD 329
>gi|310816979|ref|YP_003964943.1| RluA family pseudouridine synthase [Ketogulonicigenium vulgare Y25]
gi|385234565|ref|YP_005795907.1| Pseudouridine synthase, RluA family protein [Ketogulonicigenium
vulgare WSH-001]
gi|308755714|gb|ADO43643.1| RluA family pseudouridine synthase [Ketogulonicigenium vulgare Y25]
gi|343463476|gb|AEM41911.1| Pseudouridine synthase, RluA family protein [Ketogulonicigenium
vulgare WSH-001]
Length = 347
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 88/202 (43%), Gaps = 45/202 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS---AQHAVTRY 93
R +++ YWA V G P G S G V + +++ V+ + + A+ A T Y
Sbjct: 172 RNVRKIYWAAVAGIPTPWAG--SVKYGLVKMGRRGDEKMHCVHPAAVATTEGAKRAHTDY 229
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
V + W+ L P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 230 AVQDQAGQRMAWMALVPITGRTHQLRAHMAEI-GHPIIGDGKYG---------------- 272
Query: 154 KDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSK 213
SN E + G +G Q +LHLH + + + I K
Sbjct: 273 -GSNAE-------NAGDGWGAGIGGGVQNKLHLHARTLI---IEHPITK----------- 310
Query: 214 LETLKLVAPLPSHMQRSWDVLN 235
ETL L APLP+HMQ +WD L
Sbjct: 311 -ETLTLQAPLPAHMQSTWDYLG 331
>gi|288958958|ref|YP_003449299.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288911266|dbj|BAI72755.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 354
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 58/218 (26%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + + +++ YWA+ VG P +G I L K +G+
Sbjct: 173 TSGVLLLARTTFAASKLTELFRGSAVRKIYWAVTVGVPTPYQGKIDLALAKEGGPHGER- 231
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
V N + + AVT Y V + ++ + PLTGR HQLRVH A V GTPI+GD
Sbjct: 232 ---VAENKE--EGKRAVTVYSVQENVGKQAAFVAMWPLTGRTHQLRVHMAAV-GTPILGD 285
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY Q G L + +K LHLH + + L
Sbjct: 286 GKYAGQ-----------------------------GAFLAGAEVAKK---LHLHARRLIL 313
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSW 231
P+ +T+ + APLP HMQ +W
Sbjct: 314 PHPRGG---------------KTIDVTAPLPDHMQATW 336
>gi|374292582|ref|YP_005039617.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
gi|357424521|emb|CBS87400.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
Length = 354
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 58/218 (26%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + + +++ YWA+ VG P +G I L K +G+
Sbjct: 173 TSGVLLLARTTFAASKLTELFRGSAVRKIYWAVTVGVPTPYQGKIDLALAKEGGPHGER- 231
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
V N + + AVT Y V + ++ + PLTGR HQLRVH A V GTPI+GD
Sbjct: 232 ---VAENKE--EGKRAVTVYSVQENVGKQAAFVAMWPLTGRTHQLRVHMAAV-GTPILGD 285
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY Q G L + +K LHLH + + L
Sbjct: 286 GKYAGQ-----------------------------GAFLAGAEVTKK---LHLHARRLIL 313
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSW 231
P+ +T+ + APLP HMQ +W
Sbjct: 314 PHPRGG---------------KTIDVTAPLPDHMQATW 336
>gi|260428027|ref|ZP_05782006.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
gi|260422519|gb|EEX15770.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
Length = 351
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 45/198 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVV---NNDQIMSAQHAVTRYQVIK 97
YWA+V G P G I L K +G+ +++ V + D+ A+ A T Y +
Sbjct: 179 YWAVVAGVPTPYLGEIRYALVKAPGHGSSGEGEKMICVHPRDVDRTEGAKRAHTLYATLY 238
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSN 157
+W+ L P+TGR HQLR H AE+ G PI+GD KYG S
Sbjct: 239 RVAGRASWVALEPITGRTHQLRAHMAEI-GHPIIGDGKYG-----------------GSG 280
Query: 158 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL 217
+E L G + G ++ K +LHLH + MT + + +
Sbjct: 281 QE-----NLGDGWGAQLGGVISK--KLHLHARSMTFEHPVTH---------------KRV 318
Query: 218 KLVAPLPSHMQRSWDVLN 235
+ APLP HM+ +W+ L
Sbjct: 319 TVTAPLPEHMKHTWETLG 336
>gi|303281963|ref|XP_003060273.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457744|gb|EEH55042.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 443
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 101/271 (37%), Gaps = 94/271 (34%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPL---------------GKVVVDNGKSD---------- 73
++R YWALV G P +GVI APL G V + +D
Sbjct: 181 IERTYWALVAGRPSRDEGVIRAPLRIPGKRNGNTKRRDGGVVFFADDATDERRARLPRPP 240
Query: 74 -------------RITVVNNDQIMSAQHAVTRYQVI----------------KPSCHGYT 104
R+ D + AVT Y+VI K + T
Sbjct: 241 DVAPGGGGGASEGRVEATTEDDPRGVR-AVTSYRVIGEVPRDADGDDGDDDEKVTHPRPT 299
Query: 105 WLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHP------------ 149
L+L+ TGRKHQ+RVH A LGTP+VGDYKYG++ R+ ++ P
Sbjct: 300 LLELTLSTGRKHQIRVHLASALGTPVVGDYKYGYRDTPRTRRGREIAPPAWMEALRDVEA 359
Query: 150 -----SDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 204
S +D L + G + LHLH + + P
Sbjct: 360 AARRGSGTIRDPASAAAWRARRSLALADDDGGGVP----LHLHARSLRFPK--------- 406
Query: 205 LSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
SG DV +++VAPLP H+ + + L
Sbjct: 407 -PSGGDV-----VRVVAPLPPHLASALERLG 431
>gi|254512315|ref|ZP_05124382.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
gi|221536026|gb|EEE39014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
Length = 347
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 86/204 (42%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIM---SAQHAVT 91
R ++ YWALV G P G I L K G+ +++ ++ ++ A+ A T
Sbjct: 169 RNTRKIYWALVAGVPTPYLGEIKTGLVKASGHGKQGEGEKMIALHPSEVNDTPGAKRAHT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + W+ + P+TGR HQLR H A + G PI+GD KYG
Sbjct: 229 LYATLYRVAGRAAWVAMEPVTGRTHQLRAHMAAI-GHPIIGDGKYGGSG----------- 276
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
++ L G + G I+ K +LHLH + ++ I + +S
Sbjct: 277 -----------QENLGDGWGAQLGGIISK--KLHLHARSLSF---EHPITRKPVS----- 315
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
L APLP HM+ SWD L
Sbjct: 316 -------LAAPLPDHMKHSWDTLG 332
>gi|73954899|ref|XP_546413.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Canis lupus familiaris]
Length = 404
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 42/200 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R + + YWA+ V P S GV+ P+ + V DNGK R+
Sbjct: 180 RQVAKKYWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNR 239
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N I AVT+Y V+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 240 NAHI-----AVTQYHVLS-STLSSALVELQPITGIKHQLRVHLSFGLNCPILGDHKYS-- 291
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS + +++ ++T L LHLH +++ LP +
Sbjct: 292 ---DWNKLAPQKLSLGTLKKLGLQQTKARHLP------------LHLHARQLILPALGS- 335
Query: 200 IQKVQLSSGCDVSKLETLKL 219
+K +LS C + + L L
Sbjct: 336 -RKEELSLVCKLPRFFVLSL 354
>gi|126327383|ref|XP_001372198.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Monodelphis domestica]
Length = 364
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 30/181 (16%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITVVNNDQIMS---------- 85
R + + YWA+ VG P S G+I P+ K V + ++T+ N ++ +
Sbjct: 179 RQVTKKYWAICVGVPMPSAGMIDIPIIEKEVQGQQQHHKMTLAPNYRLENGKTVKVRPNR 238
Query: 86 -AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
A AVT+Y+V+ S L+L P+TG KHQLRVH A LG P++GD+KY W
Sbjct: 239 HAHIAVTQYRVLS-STLTCALLELQPVTGVKHQLRVHLAFGLGCPVLGDHKYS-----DW 292
Query: 145 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 204
+ P LS +++ GL+ L LHLH +++TLP + +++
Sbjct: 293 NKLAPQKLSVGILKKL--------GLEQAKTRYLP----LHLHAQQLTLPPLGPESEELN 340
Query: 205 L 205
L
Sbjct: 341 L 341
>gi|146278539|ref|YP_001168698.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17025]
gi|145556780|gb|ABP71393.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17025]
Length = 346
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P +G I L K G+ +++ ++ ++ A+ A T
Sbjct: 169 RNTRKIYWALVAGVPSPKQGSIKYALMKAAGHGRGGEGEKMLCIHPAKVGDYPEAKRAQT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ + W+ LSP+TGR HQLR H AE LG PIVGD KYG + Q + D
Sbjct: 229 DFFTLWFLGTRCAWMALSPITGRTHQLRAHMAE-LGHPIVGDGKYGGSS-----QENAGD 282
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
G + G + + +LHLH + +T + I+K
Sbjct: 283 -----------------GWGAQIGGEVSR--KLHLHARSLT---IEHPIRK--------- 311
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
E + APLP HM ++W +L+
Sbjct: 312 ---ELVTFTAPLPPHMAKTWKLLD 332
>gi|359412538|ref|ZP_09205003.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357171422|gb|EHI99596.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 305
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+ALV G + KG I PL + K DR+ + + + AVT YQVI+
Sbjct: 166 MKREYYALVEGRIKNDKGTIDKPLAR-----SKKDRLKI---GIVEGGKRAVTHYQVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+GYT +K TGR HQ+RVH A + G P+VGD YG++ R
Sbjct: 217 RYNGYTLIKCVLETGRTHQIRVHMASI-GYPLVGDPLYGFKKQR 259
>gi|75674513|ref|YP_316934.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74419383|gb|ABA03582.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
Length = 264
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 31/156 (19%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YWA+V G P +G I PLG++ + G K D + + + + + +
Sbjct: 106 YWAVVEGGPSEDEGAIDIPLGRLNEERGWWQKPDPNGLPSTTKWKVLGRSSPDTSTVSGA 165
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
TWL L PLTGR HQLRVHCA +G PIVGD YG Q + L + NE+
Sbjct: 166 GVQLTWLSLEPLTGRTHQLRVHCA-AMGWPIVGDNIYGTQ----------ASLRRSRNEQ 214
Query: 160 -IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
+P+ LD +P LHLH +++ +P
Sbjct: 215 YVPR-------LD---------EPGLHLHARQIAIP 234
>gi|318043192|ref|NP_001187897.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
gi|308324268|gb|ADO29269.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
Length = 386
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 43/192 (22%)
Query: 23 TVERV--MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAP----------------LGK 64
T ER+ + + + EKR Y + VG P S+GVI P L
Sbjct: 189 TAERIHNLIRSHQAEKR-----YMVITVGVPVPSEGVIDIPIIEKEVMGDQHHFKMGLSP 243
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
+ + D + V ++ AQ AVT Y+V+ S G + ++L P+TG KHQLRVH A
Sbjct: 244 LYRPTEEGDGLVRVRANR--QAQSAVTHYKVLD-SSSGCSLVELQPVTGVKHQLRVHMAL 300
Query: 125 VLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRL 184
L PI+GD+KY TH W + P +++P+ GL+ L L
Sbjct: 301 ALACPILGDHKY---TH--WNKLAP--------QKLPEGVLRRLGLEQSKTRHLP----L 343
Query: 185 HLHCKEMTLPNV 196
HLH +++TLP V
Sbjct: 344 HLHVRQITLPGV 355
>gi|417399915|gb|JAA46938.1| Putative rna pseudouridylate synthase [Desmodus rotundus]
Length = 377
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 92/218 (42%), Gaps = 58/218 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVN 79
R + + YWA+ V P + GV+ P+ + VD+GK R+
Sbjct: 179 RQVTKKYWAVTVRVPVPAAGVVDIPIVEKEVQGQQQHHKMTLSPSYRVDDGKMVRVRTSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 KASV-----AVTQYQVLS-STVSSALLELQPITGIKHQLRVHLSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 197
W + P LS + ++ +P+ K H LHLH +++ LP +
Sbjct: 291 ---DWNKLAPQKLSAGTLKKLGLPQAKARHIP--------------LHLHARQLVLPALG 333
Query: 198 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
S+ E L LV LP + RS L
Sbjct: 334 --------------SREEELSLVCRLPRYFVRSLSRLG 357
>gi|429769324|ref|ZP_19301437.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
gi|429187338|gb|EKY28254.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
Length = 331
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWA+V+G P+ S G I L K +++ + R + + + A T +
Sbjct: 168 RRQAKKTYWAIVIGNPKPSAGQIDMALKKTGINDFEMMRPAEAKDPK---GEPAETAFAT 224
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I + H W+ L P TGR HQLR H A +G PI+GD KYG
Sbjct: 225 ISRAAHRAAWMALRPFTGRTHQLRAHMA-AIGHPILGDPKYG 265
>gi|363742563|ref|XP_001231937.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Gallus gallus]
Length = 354
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 26 RVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITVVNNDQI- 83
R+++K EK YWA+ VG+P ++G++ P+ + V + + ++T+ N ++
Sbjct: 162 RLLFKTRQVEK-----IYWAISVGSPDPAEGIVEIPMVEREVQSHQPHFKMTLAPNYRMS 216
Query: 84 ------------MSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
+A+ AVT+Y+V+ S + L+L P+TG KHQLRVH A LG PI+
Sbjct: 217 PEDGKVLKIRKNRNAESAVTQYRVLA-SSSACSLLELQPITGVKHQLRVHLAYGLGCPIL 275
Query: 132 GDYKYGWQTHRKWKQFHPSDLSKDSNE--EIPKEKTLHFGLDLESGSILEKQPRLHLHCK 189
GD+KY W + P L + + + ++ + K+ H LHLH
Sbjct: 276 GDHKYS-----HWSKLAPQKLPEITLKRLKLQQSKSRHLP--------------LHLHAY 316
Query: 190 EMTLPNVSQAIQKVQL 205
++LP + +++ L
Sbjct: 317 RLSLPLGTSGSKRIDL 332
>gi|70608135|ref|NP_001020455.1| RNA pseudouridylate synthase domain-containing protein 4 [Rattus
norvegicus]
gi|81918145|sp|Q4QQT0.1|RUSD4_RAT RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|67678357|gb|AAH98023.1| RNA pseudouridylate synthase domain containing 4 [Rattus
norvegicus]
gi|149027812|gb|EDL83272.1| RNA pseudouridylate synthase domain containing 4 [Rattus
norvegicus]
Length = 377
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 54/216 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R +++ YWA+ V P S GV+ P+ + V DNGK ++
Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ + AVT+YQV+ S ++L P+TG KHQLRVH A L PI+GD+KY
Sbjct: 239 DAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS + +++ GL + LHLH +++ LP +
Sbjct: 291 ---DWNRLAPQKLSAGTLKKL--------GLQQSKARYIP----LHLHARQLILPALG-- 333
Query: 200 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
S+ E L L LP RS L
Sbjct: 334 ------------SRTEELLLACKLPHFFARSLRRLG 357
>gi|288960501|ref|YP_003450841.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
gi|288912809|dbj|BAI74297.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
Length = 226
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ + YWA+V G P G I PL K+ + K+ +V + Q AVT Y V++
Sbjct: 88 VDKTYWAVVAGGPPQDSGRIELPLAKI---SNKTGGWRIVGSPD---GQSAVTDY-VVRG 140
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G TWL+L+P TGR HQ+RVHCA + G P++GD +YG
Sbjct: 141 QADGLTWLELTPHTGRTHQIRVHCASI-GCPLIGDPQYG 178
>gi|315500130|ref|YP_004088933.1| pseudouridine synthase, rlua family [Asticcacaulis excentricus CB
48]
gi|315418142|gb|ADU14782.1| pseudouridine synthase, RluA family [Asticcacaulis excentricus CB
48]
Length = 335
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQ 94
KR + YWALV GTP +GVI PL V G +DR V+ D + A+ A T Y
Sbjct: 170 KRKAYKTYWALVAGTPDPKEGVIDVPL----VKKGINDREMVMPADPKEPGAEAAETEYV 225
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
I + H W+ L P TGR HQLR H + +G I+GD KY
Sbjct: 226 TISRAAHRLAWMALRPHTGRTHQLRAHM-QAIGHCILGDPKY 266
>gi|73749059|ref|YP_308298.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. CBDB1]
gi|73660775|emb|CAI83382.1| ribosomal large subunit pseudouridine synthase,RluD subfamily
[Dehalococcoides sp. CBDB1]
Length = 300
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+
Sbjct: 160 KERTIRKYYLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYK 211
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 212 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|114797120|ref|YP_759725.1| RluA family pseudouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114737294|gb|ABI75419.1| pseudouridine synthase, RluA family [Hyphomonas neptunium ATCC
15444]
Length = 349
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 68/216 (31%)
Query: 37 RILQRWYWALVVGTP-------RC--SKGV--ISAPLGKVVVD-----NGKSDRITVVNN 80
R + + YWA+ VG P RC KGV I+ P G VD DR ++ +
Sbjct: 170 REMDKVYWAVTVGVPSPQAGQIRCWMVKGVPDINEPSGYRPVDPYATKRRDGDRERMIRS 229
Query: 81 DQ-IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
Q + A+H++T Y V+ + W+ + P TGR HQLR H E + T I+GDYKY
Sbjct: 230 AQGVEGARHSITDYVVVSTAGPKAAWVAMRPETGRMHQLRFHMLE-MNTSILGDYKY--- 285
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
S E+P+ L G LHLH + + +P
Sbjct: 286 ---------------KSRREVPQ--------GLAEG--------LHLHARALIIPR---- 310
Query: 200 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ +K+VAPLP HM+ +++ L
Sbjct: 311 ------------EHGKPIKIVAPLPPHMKETFETLG 334
>gi|260432477|ref|ZP_05786448.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416305|gb|EEX09564.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWALV G P G I L K G+ +++ V+ ++I S A+ A T
Sbjct: 169 RNTRKIYWALVAGVPTPYLGEIKTGLVKAPGHGKQGEGEKMIAVHLNEIDSTPGAKRAHT 228
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + +W+ + P+TGR HQLR H A + G PI+GD KYG
Sbjct: 229 LYATLFRVASRASWVAMEPVTGRTHQLRAHMAAI-GHPIIGDGKYG-------------- 273
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G ++ K +LHLH + + + Q
Sbjct: 274 ---GSGQE-----NLGDGWGAQLGGVISK--KLHLHARTASFKHPMTGKQ---------- 313
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM+ SWD L
Sbjct: 314 -----VTINAPLPPHMKDSWDTLG 332
>gi|326438031|gb|EGD83601.1| hypothetical protein PTSG_04209 [Salpingoeca sp. ATCC 50818]
Length = 293
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
IA +G + ++ ++ +KR Y A+ +G P KG + P+G D G +
Sbjct: 90 IAKHAGAARILNNLFAEHQVDKR-----YLAMTLGAPYPEKGRLDFPIG-TNKDTGATAC 143
Query: 75 IT-VVNNDQ---IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
IT ++ D+ + + A T Y+VI H + L P TGRKHQLRVHCA+ L PI
Sbjct: 144 ITPTMSADERSALTNVVDAATNYRVIDNIDHHIALVDLKPHTGRKHQLRVHCAQALHCPI 203
Query: 131 VGDYKYG 137
VGD KYG
Sbjct: 204 VGDNKYG 210
>gi|453331600|dbj|GAC86514.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
thailandicus NBRC 3255]
Length = 243
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R +++ YW +V GTP +G ISAPL + N R+ V AVTR++
Sbjct: 104 QNRQVRKLYWTVVEGTPAEDEGEISAPL--LRQSNPSGWRMIVDPK-----GDAAVTRWR 156
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ +G +WL+L LTGR HQ R+HCA LGTPIVGD YG
Sbjct: 157 VLG-RANGRSWLELELLTGRTHQARIHCAS-LGTPIVGDRVYG 197
>gi|405951014|gb|EKC18963.1| RNA pseudouridylate synthase domain-containing protein 4
[Crassostrea gigas]
Length = 354
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 26 RVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT---VVNND- 81
R +KD R +++ Y + G P +G+I+ P+ + V K R+T V N+D
Sbjct: 163 RKAFKD-----RKVKKTYLVIAKGIPSLKEGIINVPIAEGEVGKDKRKRMTCIPVYNSDT 217
Query: 82 -QIMSAQH-----AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 135
+M AVT Y+V+ S H L++SP TG KHQ+R H VL TP++GD+K
Sbjct: 218 KHVMHKTKKKTVPAVTHYKVVANS-HSCALLEVSPETGVKHQIRTHLLHVLNTPVLGDHK 276
Query: 136 YGWQTHRKWKQFHPSDL 152
Y + T K Q PSD+
Sbjct: 277 YSYLTEIK-PQILPSDV 292
>gi|407788345|ref|ZP_11135477.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
gi|407197626|gb|EKE67680.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
Length = 348
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVVNNDQIMS---AQHAVTRYQ 94
++ YWALV G P G I L K G+ +++ ++ + + A+ A T Y
Sbjct: 173 RKIYWALVAGVPVPYLGEIKYGLMKAGGHGARGEGEKMIAIHPRDMNANPDAKRAHTLYA 232
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
+ +W+ + P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 233 TLYRVGSRASWVAMEPITGRTHQLRAHMAEI-GHPIIGDGKYG----------------- 274
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
S +E L G + G I+ K +LHLH + +T + KV
Sbjct: 275 GSGQE-----NLGDGWGAQLGGIISK--KLHLHARSLTFEH--PVTHKV----------- 314
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+ + APLP HM+ SWD
Sbjct: 315 --ITVTAPLPEHMRNSWDTFG 333
>gi|351698955|gb|EHB01874.1| RNA pseudouridylate synthase domain-containing protein 4
[Heterocephalus glaber]
Length = 377
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 40/186 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R +++ YWA+ V P S GV+ P+ + V DNGK ++
Sbjct: 179 RQVEKKYWAVTVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVKVRTSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N QI AVT+YQV+ S ++L P+TG KHQLRVH + L P++GD+KY
Sbjct: 239 NAQI-----AVTQYQVLS-STVSSALVELHPVTGIKHQLRVHLSFGLDCPVLGDHKY--- 289
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
SD ++ + +++P + GL + LHLH +++ LP +
Sbjct: 290 ----------SDWNRLAPQKLPIGTLKNLGLKQSKARYIP----LHLHARQLILPPLGSR 335
Query: 200 IQKVQL 205
+++QL
Sbjct: 336 KEELQL 341
>gi|452204042|ref|YP_007484175.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
gi|452111101|gb|AGG06833.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
Length = 300
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+
Sbjct: 160 KERTVRKYYLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYK 211
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 212 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|147669825|ref|YP_001214643.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|289433036|ref|YP_003462909.1| pseudouridine synthase [Dehalococcoides sp. GT]
gi|146270773|gb|ABQ17765.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|288946756|gb|ADC74453.1| pseudouridine synthase, RluA family [Dehalococcoides sp. GT]
Length = 300
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+
Sbjct: 160 KERTVRKYYLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYK 211
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 212 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|197104730|ref|YP_002130107.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
gi|196478150|gb|ACG77678.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
Length = 243
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 40/180 (22%)
Query: 36 KRILQRWYWALVV-GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
KR + Y A+V G P +KGVI PL +V + G+ + V D A+ A +RY+
Sbjct: 96 KRAFSKTYLAIVTPGAPVPAKGVIDRPLRRV--EEGREAYMRVCEPDHP-DAEAAASRYR 152
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
+K G ++LSP TGR HQLRVH A V G PI GD +YG +
Sbjct: 153 TLK-EGEGAALVELSPETGRMHQLRVHLAAV-GRPIAGDARYGGALMVGGRPV------- 203
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
PRL LH + + P+ + ++++ D+++L
Sbjct: 204 ---------------------------PRLMLHARALAFPHPAGGTKRLEAEPPSDMAEL 236
>gi|329889168|ref|ZP_08267511.1| pseudouridine synthase, RluA family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844469|gb|EGF94033.1| pseudouridine synthase, RluA family protein [Brevundimonas diminuta
ATCC 11568]
Length = 331
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWA+V+G P+ S G I L K +++ + R + + + A T +
Sbjct: 168 RRQAKKTYWAIVIGNPKPSAGQIDMALKKTGINDFEMMRPAEPKDPK---GEPAETAFAT 224
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I + H W+ L P TGR HQLR H A +G PI+GD KYG
Sbjct: 225 ISRAAHRAAWMALRPFTGRTHQLRAHMA-AIGHPILGDPKYG 265
>gi|452205541|ref|YP_007485670.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
gi|452112597|gb|AGG08328.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
Length = 300
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 10/113 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y ALV G R ++G I APLG+ D +I VV++ +HA T Y+
Sbjct: 160 KERTVRKYYLALVKGELRPAEGFIEAPLGR---DPQNRQKIAVVSD-----GRHARTGYK 211
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 212 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAVYGQKESWVKRQF 262
>gi|150016471|ref|YP_001308725.1| RluA family pseudouridine synthase [Clostridium beijerinckii NCIMB
8052]
gi|149902936|gb|ABR33769.1| pseudouridine synthase, RluA family [Clostridium beijerinckii NCIMB
8052]
Length = 305
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+ALV G + KG+I PL + K DR+ + + + AVT Y+V++
Sbjct: 166 MKREYYALVEGRLKNDKGIIDKPLAR-----NKRDRLKI---GIVEGGKRAVTHYEVLE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+GYT +K TGR HQ+RVH A + G P+VGD YG++ R
Sbjct: 217 RFNGYTLIKCILETGRTHQIRVHMASI-GFPLVGDPLYGFKKQR 259
>gi|410919717|ref|XP_003973330.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Takifugu rubripes]
Length = 385
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 48/221 (21%)
Query: 24 VERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAP----------------LGKVVV 67
VER++ +++ ++ YW + VG P S G+I P L +
Sbjct: 187 VERLLDLQRNHQ---VEMTYWVITVGVPVPSVGIIDIPIIEREVTGPQPHYKMALSPLFK 243
Query: 68 DNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 127
N D +T + + A AVT+Y+V+ S G + ++L P TG KHQ+RVH A L
Sbjct: 244 MNDSGDGLTKIRAHR--QAHPAVTKYKVLD-SSSGCSLVELQPCTGVKHQMRVHMAFGLT 300
Query: 128 TPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLH 187
PI+GD+KY W + P +++P+ GL+ L LHL
Sbjct: 301 CPILGDHKYS-----HWNKLAP--------QKLPERVLKKLGLEQSKSRHLP----LHLF 343
Query: 188 CKEMTLPNVSQAIQKVQLSSGCDVSKLET-----LKLVAPL 223
+ +TLP V+QA +S C K T L+L+ P
Sbjct: 344 ARRLTLPGVNQA----NVSVSCPAPKYFTQTSNLLQLMLPF 380
>gi|407800531|ref|ZP_11147391.1| hypothetical protein OCGS_2464 [Oceaniovalibus guishaninsula
JLT2003]
gi|407057450|gb|EKE43426.1| hypothetical protein OCGS_2464 [Oceaniovalibus guishaninsula
JLT2003]
Length = 350
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 45/200 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIMS---AQHAVT 91
R ++ YWA + G P G + L K G+ +++ ++ D + + A+ A T
Sbjct: 170 RATRKIYWAALAGVPSPRMGSVKYGLVKAPGRGAGGEGEKMLCIHPDAVTATDGAKRAHT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ +W+ L P+TGR HQLR H AE LG P++GD KYG
Sbjct: 230 DYAVLSALGGRMSWVALVPVTGRTHQLRAHMAE-LGHPVIGDGKYG-------------- 274
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E + G + G L + +LHLH + + + +G D
Sbjct: 275 ---GSGQENAGD-----GWGAQLGGELSR--KLHLHARSLAFRHP---------VTGAD- 314
Query: 212 SKLETLKLVAPLPSHMQRSW 231
L L APLP HM R+W
Sbjct: 315 -----LTLTAPLPDHMARTW 329
>gi|109109212|ref|XP_001112402.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Macaca mulatta]
Length = 377
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +DNGK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKVRHSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVTRYQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTRYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHAQQLILPALG-------- 333
Query: 206 SSGCDVSKLETLKLVAPLP 224
S+ E L LV LP
Sbjct: 334 ------SRKEDLNLVCKLP 346
>gi|373450069|ref|ZP_09542141.1| 23S rRNA pseudouridylate synthase [Wolbachia pipientis wAlbB]
gi|371932731|emb|CCE77129.1| 23S rRNA pseudouridylate synthase [Wolbachia pipientis wAlbB]
Length = 307
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I R Y + + R +++ Y AL G P G I PL K + +
Sbjct: 141 TSGVIIFARNASVAKYLMEEFKGRRIKKTYLALTFGIPSKDNGTIDYPLVKKYISGQEK- 199
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
VV+ D S Q+A T + +I H +LKL P+TGR HQLR H A + PI+GD
Sbjct: 200 --VVVDED---SPQNATTHFSIIARLKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGD 253
Query: 134 YKYGWQ 139
KYG +
Sbjct: 254 GKYGGK 259
>gi|374812366|ref|ZP_09716103.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-1]
Length = 309
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 13/124 (10%)
Query: 18 SSGIITV----ERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I E + + + ++R +++ Y A+V+GTPR G+I ++V D+
Sbjct: 145 TSGVIIAAYDDEALAFLADQFKERRVKKTYGAIVLGTPREKAGIIET---RIVRDSRDRK 201
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R TV + + A+TRY+VI+ S Y+ L L P TGR HQLRVH LG PI+GD
Sbjct: 202 RFTVSPD----RGKPALTRYRVIR-SWGAYSLLLLQPRTGRTHQLRVHLRH-LGHPILGD 255
Query: 134 YKYG 137
YG
Sbjct: 256 PIYG 259
>gi|402895748|ref|XP_003910979.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Papio anubis]
Length = 377
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +DNGK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKVRHSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVTRYQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTRYQVLS-STVSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 294 RLAPQKLSMGTLKKL--------GLEQSKARYIP----LHLHAQQLILPALG-------- 333
Query: 206 SSGCDVSKLETLKLVAPLP 224
S+ E L LV LP
Sbjct: 334 ------SRKEDLTLVCKLP 346
>gi|288962105|ref|YP_003452400.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288914371|dbj|BAI75856.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 257
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRI----TVVNNDQIMSAQHAVTRYQ 94
+++ YWA+ G P GVI PL K + S T++ + + Q AVT Y+
Sbjct: 98 VEKTYWAVADGVPEAGSGVIDLPLLKRIEPKSPSGAGRSSWTILPDP---AGQPAVTEYR 154
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ + G WL+L P TGR HQ+RVHCA + G P+VG+ YG
Sbjct: 155 VLGTAADGRCWLELRPRTGRTHQIRVHCAAI-GCPLVGEPFYG 196
>gi|206889653|ref|YP_002248865.1| pseudouridylate synthase, 23S RNA-specific [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741591|gb|ACI20648.1| pseudouridylate synthase, 23S RNA-specific [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 315
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 10/107 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KR +++ Y ALV G R S G I+ P+G+ + D K + + A+ A+T ++
Sbjct: 164 KKREIKKEYLALVYGQLRGS-GKITTPVGRAIYDRKKM-------SIKSKKAKEAITEWE 215
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
VIK + YT+LK+ LTGR HQ+RVH + + G P++GD YG +T+
Sbjct: 216 VIK-NFKNYTFLKVKILTGRTHQIRVHFSSI-GHPVIGDKTYGRKTY 260
>gi|91200050|emb|CAJ73092.1| similar to ribosomal large subunit pseudouridine synthase D
[Candidatus Kuenenia stuttgartiensis]
Length = 335
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
EKR++++ Y+A+V G I+ P+G+ VD K V D + ++A + Y+
Sbjct: 173 EKRLVKKEYFAVVEGEVAFDSNEINMPIGRHRVDRQK----MAVRRD---TGKNATSVYE 225
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
VI+ GYT +K+ P TGR HQ+RVH + +G P+V D Y K+ SDL
Sbjct: 226 VIE-RFRGYTLVKIMPKTGRTHQIRVHM-QAIGHPVVADEMYS-----KYNACFRSDLL- 277
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
E P E GSI+E+Q LH H E P +++ + Q+ D+S L
Sbjct: 278 -GKERAPDE-----------GSIIERQA-LHAHRIEFFHPILNKQM-AFQVDMAEDISFL 323
Query: 215 -ETLKLVAPL 223
L+ + PL
Sbjct: 324 VSALRELRPL 333
>gi|383422273|gb|AFH34350.1| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Macaca mulatta]
Length = 377
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +DNGK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKMRHSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVTRYQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTRYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHAQQLILPALG-------- 333
Query: 206 SSGCDVSKLETLKLVAPLP 224
S+ E L LV LP
Sbjct: 334 ------SRKEDLNLVCKLP 346
>gi|89070524|ref|ZP_01157813.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
gi|89043831|gb|EAR50029.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
Length = 348
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 93/227 (40%), Gaps = 49/227 (21%)
Query: 18 SSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN--GK 71
+SGI+ + R + R ++ YWA V G P G + L K G+
Sbjct: 146 TSGILLLARTRAAAKGLTDAFRSRETRKIYWAAVAGVPHPRMGTVKYGLVKQPGHGARGE 205
Query: 72 SDRITVVNNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
++++ ++ D+++ A+ AVT Y VI+ W+ L P+TGR HQLR H AE LG
Sbjct: 206 NEKMRCIHPDEVLRTPDAKRAVTDYAVIETLARRAAWVALVPVTGRTHQLRAHMAE-LGH 264
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI GD KYG +E G I K L LH
Sbjct: 265 PIAGDGKYGGSG---------------------QENLGDGWGAGLGGDISRK---LQLHA 300
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ ++L SG ++ APLP HM R+W+ +
Sbjct: 301 RSLSL---------THPVSGARMT------FTAPLPDHMARTWEYVG 332
>gi|295688947|ref|YP_003592640.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430850|gb|ADG10022.1| pseudouridine synthase, RluA family [Caulobacter segnis ATCC 21756]
Length = 332
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-NNDQIMSAQHAVTRYQ 94
KR Q+ YWA+V G P ++GV+ L K G DR VV + AQ A T +
Sbjct: 168 KRKAQKTYWAIVAGNPHPTEGVMELHLAK----RGVGDRELVVPAQPKDADAQPAETEFV 223
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I + TW+ L P TGR HQLR H + +G PI+GD KYG
Sbjct: 224 TISRAGPRVTWMALRPHTGRTHQLRAHM-KAMGHPILGDPKYG 265
>gi|380817330|gb|AFE80539.1| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Macaca mulatta]
Length = 377
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +DNGK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKMRHSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVTRYQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTRYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHAQQLILPALG-------- 333
Query: 206 SSGCDVSKLETLKLVAPLP 224
S+ E L LV LP
Sbjct: 334 ------SRKEDLNLVCKLP 346
>gi|355567206|gb|EHH23585.1| hypothetical protein EGK_07073 [Macaca mulatta]
gi|355752781|gb|EHH56901.1| hypothetical protein EGM_06396 [Macaca fascicularis]
Length = 377
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +DNGK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKMRHSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVTRYQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTRYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHAQQLILPALG-------- 333
Query: 206 SSGCDVSKLETLKLVAPLP 224
S+ E L LV LP
Sbjct: 334 ------SRKEDLNLVCKLP 346
>gi|190570815|ref|YP_001975173.1| ribosomal large subunit pseudouridine synthase C [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019659|ref|ZP_03335464.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
gi|190357087|emb|CAQ54492.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212994700|gb|EEB55343.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
Length = 307
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I R Y + + R +++ Y AL G P G I PL K + +
Sbjct: 141 TSGVIIFARNASVAKYLMEEFKGRRIKKTYLALTFGIPSKDNGTIDYPLVKKYISGQEK- 199
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
VV+ D S Q+A T + +I H +LKL P+TGR HQLR H A + PI+GD
Sbjct: 200 --VVVDED---SPQNATTHFLIIARLKHNVAYLKLQPITGRTHQLRAHLAHI-NCPILGD 253
Query: 134 YKYGWQ 139
KYG +
Sbjct: 254 GKYGGK 259
>gi|148555622|ref|YP_001263204.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas
wittichii RW1]
gi|148500812|gb|ABQ69066.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas
wittichii RW1]
Length = 368
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R ++ YWA+ G P G+I P+ K G+ ++ D+ A TRY+VI
Sbjct: 179 RTARKVYWAIATGVPSIDDGMIELPIAKQPGTGGEK-----MHVDE-KEGSPARTRYRVI 232
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ + + W++L P TGR HQLRVH A +G PIVGD KYG
Sbjct: 233 ERAGNRACWVELQPHTGRTHQLRVHLA-AIGHPIVGDGKYG 272
>gi|348573903|ref|XP_003472730.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Cavia porcellus]
Length = 375
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 30/181 (16%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG------------KSDRITVVNNDQIM 84
R + + YWA+ V P S GV+ P+ + V + DR VV
Sbjct: 177 RQVAKKYWAVTVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLSPSYRMDRGKVVRVRASQ 236
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+A+ AVT+YQV+ S ++L P+TG KHQLRVH + L P++GD+KY W
Sbjct: 237 NARVAVTQYQVLS-STVSSALVELQPVTGIKHQLRVHLSFGLDCPVLGDHKYS-----AW 290
Query: 145 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 204
+ P +++P GL+ + LHLH +++TLP + +++Q
Sbjct: 291 NKLAP--------QKLPAGTLKRLGLEQSKARYIP----LHLHARQLTLPPLGFRKEELQ 338
Query: 205 L 205
L
Sbjct: 339 L 339
>gi|16126223|ref|NP_420787.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|221234996|ref|YP_002517432.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13423445|gb|AAK23955.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|220964168|gb|ACL95524.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 331
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-NNDQIMSAQHAVTRYQ 94
KR Q+ YWA+V G P ++GV+ L K G DR VV + AQ A T +
Sbjct: 167 KRKAQKTYWAIVAGNPHPTEGVMELHLAK----RGVGDRELVVPAQPKDPDAQPAETEFV 222
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I + TW+ L P TGR HQLR H + +G PI+GD KYG
Sbjct: 223 TISRAGPRVTWMALRPHTGRTHQLRAHM-KAMGHPILGDPKYG 264
>gi|194212968|ref|XP_001502415.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Equus caballus]
Length = 377
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 54/216 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R + + YWA+ V P S GV+ P+ + V D+GK R+ +
Sbjct: 179 RQVAKKYWAITVRVPVPSAGVVDIPIIEKEVQGRQHHHKMTLSPSYRMDSGKMVRVRMRR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N + AVT+YQV+ + L+L P TG KHQLRVH + L PI+GD+KY
Sbjct: 239 NAHV-----AVTQYQVLSNTL-SSALLELQPATGIKHQLRVHLSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS + +++ GL + LHLH +++ LP +
Sbjct: 291 ---DWNRLAPQKLSVGTLKKL--------GLQQSKARHIP----LHLHARQLILPALG-- 333
Query: 200 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
S+ E L LV LP + RS + L
Sbjct: 334 ------------SRKEELNLVCRLPRYFVRSLNRLG 357
>gi|260893452|ref|YP_003239549.1| RluA family pseudouridine synthase [Ammonifex degensii KC4]
gi|260865593|gb|ACX52699.1| pseudouridine synthase, RluA family [Ammonifex degensii KC4]
Length = 331
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
E+R+L+ YWALV G + ++G I AP+G+ ++ VV + AVT Y
Sbjct: 163 KERRVLKE-YWALVYGEVKPAQGRIEAPIGR---HPRYRQKMAVV-----AGGRPAVTHY 213
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+V++ GYT L++ P TGR HQ+RVH LG PIVGD KYG
Sbjct: 214 EVVE-YFPGYTLLRVRPETGRTHQIRVHL-HYLGHPIVGDLKYG 255
>gi|146296964|ref|YP_001180735.1| RluA family pseudouridine synthase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410540|gb|ABP67544.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 292
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y ++ EKR +++ Y A+V G G I P+
Sbjct: 122 TSHIINRLDKDTSGIVVFAKNSYFHSIVSSEFEKRTIEKTYIAVVDGILTKKSGFIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
+ ++G I N D +A+T Y+V+ + Y+ LKL P+TGR HQLRVH
Sbjct: 182 SRS--NDGIKREI---NED----GDYAITYYEVVD-YKNNYSILKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYGWQTHRKW 144
A + G PIVGD YG ++ +
Sbjct: 232 ASI-GYPIVGDVLYGTGKNKNF 252
>gi|339624005|ref|ZP_08659794.1| pseudouridylate synthase, 23S RNA-specific [Fructobacillus
fructosus KCTC 3544]
Length = 306
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R+Y+ALV G + G + AP+G+ D K + + AVT ++V++
Sbjct: 165 ERYYYALVKGEFKEDHGTVDAPVGRHPKDRKKQAVVA--------GGREAVTHFEVLE-R 215
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
HGYT L+L+ TGR HQ+RVH + +G P+VGD YG Q
Sbjct: 216 FHGYTLLRLALETGRTHQIRVHM-QYIGHPVVGDATYGHQ 254
>gi|126724897|ref|ZP_01740740.1| Pseudouridine synthase, RluD [Rhodobacterales bacterium HTCC2150]
gi|126706061|gb|EBA05151.1| Pseudouridine synthase, RluD [Rhodobacteraceae bacterium HTCC2150]
Length = 347
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 45/201 (22%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVV---NNDQIMSAQHAVTRYQ 94
++ YWA V G P G I L K +G +++ + + D+ A+ A T Y
Sbjct: 172 RKIYWAAVGGVPHPKMGTIRFGLVKAPGHGPSGGGEKMICIHPRDIDKTDGAKRATTDYA 231
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
V+ W+ L P+TGR HQLR H AE LG PI+GD KYG
Sbjct: 232 VMTTLARRSAWMALVPVTGRTHQLRAHMAE-LGHPIIGDGKYGGSG-------------- 276
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
++ L G + G + K LHLH + +TL + +
Sbjct: 277 --------QENLGDGWGAQLGGDISKN--LHLHARSLTLKHPVTGAR------------- 313
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
L LVA LP HM +W +
Sbjct: 314 --LHLVAELPRHMAATWKTVG 332
>gi|354481119|ref|XP_003502750.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Cricetulus griseus]
gi|344255028|gb|EGW11132.1| RNA pseudouridylate synthase domain-containing protein 4
[Cricetulus griseus]
Length = 377
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 40/187 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R +++ YWA+ V P S GV+ P+ + V DNGK ++
Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIVEKEVQGQQQHHKMTLSPSYRMDNGKMVKVRASR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N + AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 NAHV-----AVTQYQVLS-STPSSALVELQPVTGIKHQLRVHLSFGLDCPILGDHKY--- 289
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
SD ++ + +++P GL + LHLH +++ LP +
Sbjct: 290 ----------SDWNRLAPQKLPAGTLKKLGLHQTKARYIP----LHLHARQLILPALGSR 335
Query: 200 IQKVQLS 206
+++ L+
Sbjct: 336 TEELLLA 342
>gi|332208640|ref|XP_003253415.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Nomascus leucogenys]
Length = 377
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + VD+GK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEVQGQQQHHKMTLSPSYRVDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP +
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALG-------- 333
Query: 206 SSGCDVSKLETLKLVAPLP 224
S+ E L LV LP
Sbjct: 334 ------SRKEELNLVCKLP 346
>gi|427430618|ref|ZP_18920380.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425878587|gb|EKV27301.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 235
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA+V G P +GV+ A L K+ +G VV+ + Q AVT Y+V+
Sbjct: 88 VEKTYWAVVDGAPPKEQGVLHAKLRKLTPKSGWK---MVVDEAE---GQPAVTEYRVLGR 141
Query: 99 SCHGY-TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
S G TWL+ P TGR HQ+RVHCA LG PIVGD YG
Sbjct: 142 SDDGRRTWLECKPKTGRTHQIRVHCAH-LGCPIVGDAVYG 180
>gi|209883418|ref|YP_002287275.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|209871614|gb|ACI91410.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
Length = 244
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YWA+V G P +G I PLG++ + G K D + + +R+ V+
Sbjct: 97 YWAVVEGGPAEDEGEIDIPLGRLNAERGWWQKPDPNGLPSK----------SRWSVLG-R 145
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
+G +WL L PLTGR HQLRVHCA +G PIVGD YG
Sbjct: 146 NNGLSWLALEPLTGRTHQLRVHCA-AMGFPIVGDNIYG---------------------- 182
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P LHLH +E+ +P +S+ V ++
Sbjct: 183 ----NGPRFG-----------EPSLHLHAREIVVP-LSRNKPPV--------------RV 212
Query: 220 VAPLPSHMQ 228
+AP+P+H+Q
Sbjct: 213 IAPVPAHLQ 221
>gi|410724119|ref|ZP_11363318.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
gi|410602405|gb|EKQ56885.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
Length = 305
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+ALV G + KG I PL + K DR+ + + + AVT Y+V++
Sbjct: 166 MKREYYALVEGRIKNDKGTIDKPLAR-----NKKDRLKI---GIVEGGKKAVTHYEVLE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+GYT +K TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 217 RYNGYTLIKCKLETGRTHQIRVHMASI-GFPLVGDPLYGFKKQK 259
>gi|337739499|ref|YP_004631227.1| RNA pseudouridine synthase [Oligotropha carboxidovorans OM5]
gi|386028517|ref|YP_005949292.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336093585|gb|AEI01411.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336097163|gb|AEI04986.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM5]
Length = 263
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YWA+V G P +G I PLG++ + G K D + + +R+ V+
Sbjct: 116 YWAVVEGGPAEDEGEIDIPLGRLNAERGWWQKPDPNGLPSK----------SRWSVLG-R 164
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
+G +WL L PLTGR HQLRVHCA +G PIVGD YG
Sbjct: 165 NNGLSWLALEPLTGRTHQLRVHCA-AMGFPIVGDNIYG---------------------- 201
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P LHLH +E+ +P +S+ V ++
Sbjct: 202 ----NGPRFG-----------EPSLHLHAREIVVP-LSRNKPPV--------------RV 231
Query: 220 VAPLPSHMQ 228
+AP+P+H+Q
Sbjct: 232 IAPVPAHLQ 240
>gi|254294409|ref|YP_003060432.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254042940|gb|ACT59735.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 343
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 52/199 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R L + YWA+V G P ++G + + K + +T + Q A A+T ++V+
Sbjct: 177 RELDKIYWAVVKGVPNPNEGELRGWMMKAHGPGQDKELMTAGVHGQ-KGAVFAITDFKVV 235
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ +W+ L P TGRKHQLR H +E+ G I+GD KY
Sbjct: 236 STAGQRASWVALKPSTGRKHQLRYHMSEI-GNSILGDAKY------------------TC 276
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
+ E P GL P LHLH + + +P G DV
Sbjct: 277 DRETPA------GL----------PPGLHLHARALRMPR----------RRGSDV----- 305
Query: 217 LKLVAPLPSHMQRSWDVLN 235
+++APLP HM++++D
Sbjct: 306 -EVIAPLPEHMKKTFDFFG 323
>gi|357032032|ref|ZP_09093972.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
morbifer G707]
gi|356414259|gb|EHH67906.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
morbifer G707]
Length = 221
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 16 AVSSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
A ++G + + R ++ + R + YWA+VVG P G I+ PL K NG
Sbjct: 58 ADTAGCLLIARRKTALLEAQDAFRHRRTHKLYWAVVVGNPPEDSGSITGPLLKRSDRNGW 117
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
R+ V N +A T ++V+ G WL+L LTGR HQ R HCA LGTPI+
Sbjct: 118 --RMVVDAN-----GDNARTDWRVLGRK-DGLCWLELDLLTGRTHQARAHCAAALGTPIL 169
Query: 132 GDYKYG 137
GD YG
Sbjct: 170 GDPVYG 175
>gi|432857199|ref|XP_004068578.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Oryzias latipes]
Length = 367
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 38/175 (21%)
Query: 23 TVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 82
VE ++ +N+ +QR YW + VG P S+G++ P ++ ++
Sbjct: 185 VVEHILSLRRNNQ---VQRKYWVVAVGVPVPSEGLVDIP---------------IIERER 226
Query: 83 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
A AVT+Y+V++ S G + ++L P T KHQ+RVH A L PI+GD+KY +HR
Sbjct: 227 --QAHPAVTKYRVLE-SGGGCSLVELQPFTEVKHQMRVHMAIALDCPILGDHKY---SHR 280
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 197
+K + +++P+ GL+ L LHLH +++ LP S
Sbjct: 281 ----------NKLAPQKLPEHMLKKLGLEQSQIRYLP----LHLHARQLILPARS 321
>gi|114766871|ref|ZP_01445793.1| ribosomal large subunit pseudouridine synthase C [Pelagibaca
bermudensis HTCC2601]
gi|114540917|gb|EAU43977.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
HTCC2601]
Length = 350
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 90/201 (44%), Gaps = 45/201 (22%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNN---DQIMSAQHAVTRYQ 94
++ YWA+V G P G I L K +G+ +++ V+ D+ A+ A T Y
Sbjct: 175 RKIYWAVVAGVPTPYLGEIRFGLVKAPGHGKSGEGEKMICVHPREMDRTPGAKRAHTLYA 234
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
+ +W+ L P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 235 TLYRVAGRASWVALEPITGRTHQLRAHMAEI-GHPIIGDGKYG----------------- 276
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 214
S +E L G + G ++ K +LHLH + MT + V+K
Sbjct: 277 GSGQE-----NLGDGWGAQLGGVISK--KLHLHARSMTFLH--------------PVTK- 314
Query: 215 ETLKLVAPLPSHMQRSWDVLN 235
+ + + A LP+HM +W+ L
Sbjct: 315 KPVTVTASLPAHMANTWETLG 335
>gi|27375585|ref|NP_767114.1| hypothetical protein blr0474 [Bradyrhizobium japonicum USDA 110]
gi|27348722|dbj|BAC45739.1| blr0474 [Bradyrhizobium japonicum USDA 110]
Length = 218
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 78/189 (41%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YW +V G P +G I PLG++ + G K D Q A+T ++V+
Sbjct: 83 YWTVVEGGPAEDEGTIDMPLGRLNAERGWWQKPD----------PEGQKAITNWKVMG-R 131
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G+TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 132 GDGFTWLAMEPVTGRTHQLRVHSAAT-GWPIFGDNIYG---------------------- 168
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P+LHLH +E+ +P +S+ E +++
Sbjct: 169 ----NGPRFG-----------EPKLHLHSREIVVP-ISR--------------NKEPVRV 198
Query: 220 VAPLPSHMQ 228
VAP P HM
Sbjct: 199 VAPAPPHMH 207
>gi|84685385|ref|ZP_01013283.1| ribosomal large subunit pseudouridine synthase C [Maritimibacter
alkaliphilus HTCC2654]
gi|84666542|gb|EAQ13014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2654]
Length = 350
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 49/227 (21%)
Query: 18 SSGIITVERV--MYKD--NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGK 71
+SG++ + R + KD + R ++ YWA+V G P KG + L K G+
Sbjct: 146 TSGVLLLARTRQVAKDLTDAFRHRNTRKIYWAVVAGVPLPRKGTVKWGLVKAPGHGGQGE 205
Query: 72 SDRITVVNNDQIM---SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+++ ++ ++ A+ A T Y VI+ W+ L+P+TGR HQLR H AE +G
Sbjct: 206 GEKMLCIHPSEVAKVEGAKRAETDYVVIENLAQRAAWVGLTPITGRTHQLRAHMAE-MGH 264
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PIVGD KYG S +E L G G + K +LHLH
Sbjct: 265 PIVGDGKYG-----------------GSGQE-----NLGDGWGAMLGGEISK--KLHLHA 300
Query: 189 KEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + + + K + + + A LP HM R+W+ L
Sbjct: 301 RSI---EIEHPVTK------------KPIFIEAALPEHMARTWEQLG 332
>gi|294897749|ref|XP_002776058.1| Ribosomal large subunit pseudouridine synthase D, putative
[Perkinsus marinus ATCC 50983]
gi|239882591|gb|EER07874.1| Ribosomal large subunit pseudouridine synthase D, putative
[Perkinsus marinus ATCC 50983]
Length = 604
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 87/215 (40%), Gaps = 47/215 (21%)
Query: 27 VMYKDNDNEKRILQRWYWALVVGT----PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 82
M +D + R YW LV G PR G I+ PL + G + + +
Sbjct: 340 TMARDRIGARSFWNRIYWVLVWGRVQLGPRQFSGTINIPL----IHRGHHVKPASFHTAE 395
Query: 83 IMSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
+ A+TR++++K P G T LKL P TGR+ QL+ HCA L TPIVGD Y +
Sbjct: 396 L----SAITRWEILKFSPFAGGITLLKLEPYTGRRDQLQAHCAFGLRTPIVGDDVYSKEA 451
Query: 141 HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 200
R W +P E +E L CK M
Sbjct: 452 IR-WNDAYPEKHMLQRKEMFGEE----------------------LICKRMVCSR----- 483
Query: 201 QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
Q S G D + ++AP+P HMQ+ +D L
Sbjct: 484 QISMHSFGGD-----QIDIIAPVPPHMQQMFDKLG 513
>gi|339504824|ref|YP_004692244.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
gi|338758817|gb|AEI95281.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
Length = 346
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 83/200 (41%), Gaps = 49/200 (24%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDN--GKSDRITVV---NNDQIMSAQHAVTRYQVIK 97
YWALV G P G I L K G+ +++ + D+ A+ A T Y +
Sbjct: 175 YWALVAGVPTPYLGEIRYALVKAPGHGRRGEGEKMIALPPREVDETPGAKRAHTLYATLY 234
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSN 157
+W+ + P+TGR HQLRVH AE+ G PIVGD KYG S
Sbjct: 235 RVGSRASWVAMEPITGRTHQLRVHMAEI-GHPIVGDGKYG-----------------GSG 276
Query: 158 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGCDVSKLE 215
+E + G + G ++ K +LHLH + M P + +
Sbjct: 277 QE-----NMGDGWGAQLGGVISK--KLHLHARMMRFEHPETRKPVT-------------- 315
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
+ A +P HM++SWD
Sbjct: 316 ---ITADMPDHMKQSWDTFG 332
>gi|344923325|ref|ZP_08776786.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 233
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 64/99 (64%), Gaps = 8/99 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA+V G ++G+I PL K+ ++ KS+ V+ + Q AVT+Y+V+
Sbjct: 90 IKKTYWAVVTGKLPEAQGIIDLPLAKM--NDRKSNWWMKVDAN----GQKAVTQYKVLGE 143
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ Y++++L+P+TGR HQLRVH E LG PIVGD YG
Sbjct: 144 TAQ-YSFVELTPITGRTHQLRVHL-EALGCPIVGDPVYG 180
>gi|51473455|ref|YP_067212.1| pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|383752229|ref|YP_005427329.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. TH1527]
gi|383843065|ref|YP_005423568.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. B9991CWPP]
gi|81692307|sp|Q68XB2.1|RLUC_RICTY RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|51459767|gb|AAU03730.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|380758872|gb|AFE54107.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. TH1527]
gi|380759712|gb|AFE54946.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. B9991CWPP]
Length = 303
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 16/143 (11%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D EK ++++ Y+A+ G P + G++ + +GK G+
Sbjct: 143 TSGLLLIAKNYLSSVKLHDAFKEKLVIKK-YFAITYGRPVKNVGIVKSNIGK---SKGRM 198
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+IT +++D + + A+T Y+++K + ++ P+TGR HQLR+H A++LG PI+G
Sbjct: 199 FKITDIDSD---NGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILG 254
Query: 133 DYKYGWQT---HRKWKQFHPSDL 152
D KYG + + K+ H +++
Sbjct: 255 DDKYGNKEVMPYSKYMFLHANNI 277
>gi|86135800|ref|ZP_01054379.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
gi|85826674|gb|EAQ46870.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
Length = 348
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-----NNDQIMSAQHAVT 91
R ++ YWALV G P G I A L K + ++ D+ A+ A T
Sbjct: 170 RNTRKIYWALVAGVPTPYLGEIKAGLVKAGGHGAGGEGEKMIAVHPNEIDRTPGAKRAHT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + +W+ + P+TGR HQLR H AE+ G PI+GD KYG
Sbjct: 230 YYATLYRVAGRASWVAMEPVTGRTHQLRAHMAEI-GHPIIGDGKYG-------------- 274
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G ++ K +LHLH + + + +
Sbjct: 275 ---GSGQE-----NLGDGWGAQLGGVISK--KLHLHARRLVFEHPTTK------------ 312
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + ++A LPSHM+ SW+
Sbjct: 313 ---KDIVMMAELPSHMKDSWETFG 333
>gi|384214166|ref|YP_005605329.1| hypothetical protein BJ6T_04430 [Bradyrhizobium japonicum USDA 6]
gi|354953062|dbj|BAL05741.1| hypothetical protein BJ6T_04430 [Bradyrhizobium japonicum USDA 6]
Length = 233
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YW +V G P +G + PLG++ + G K D Q A+T ++V+
Sbjct: 98 YWTVVEGGPAEDEGTVDMPLGRLNAERGWWQKPD----------PEGQKAITNWKVMG-R 146
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 147 GDGLTWLAMEPVTGRTHQLRVHSAAT-GWPIFGDNIYG---------------------- 183
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +PRLHLH +E+ +P +S+ E +++
Sbjct: 184 ----NGPRFG-----------EPRLHLHSREIVVP-ISR--------------NKEPIRV 213
Query: 220 VAPLPSHMQ 228
VAP P HM
Sbjct: 214 VAPAPPHMH 222
>gi|260589549|ref|ZP_05855462.1| ribosomal large subunit pseudouridine synthase D [Blautia hansenii
DSM 20583]
gi|331082975|ref|ZP_08332095.1| hypothetical protein HMPREF0992_01019 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540117|gb|EEX20686.1| ribosomal large subunit pseudouridine synthase D [Blautia hansenii
DSM 20583]
gi|330399970|gb|EGG79628.1| hypothetical protein HMPREF0992_01019 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 294
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
N + R + R Y A+V G P+ I+AP+ + +N +R ++ + AVT
Sbjct: 157 NQMKAREIHRTYLAVVFGIPKKEADTITAPIARK--ENSAIERCV-----DFINGERAVT 209
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
YQV+ S Y+ LKLS TGR HQ+RVH A+ +G P++GDY Y R
Sbjct: 210 NYQVVA-SKEDYSLLKLSLETGRTHQIRVH-AKYMGNPLLGDYLYNPDFSR 258
>gi|347761118|ref|YP_004868679.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter xylinus NBRC 3288]
gi|347580088|dbj|BAK84309.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter xylinus NBRC 3288]
Length = 251
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP---- 98
YWA+V G P GV+ APL +V + G+ R+ V + Q A TR++V+
Sbjct: 102 YWAIVQGAPAGPSGVVDAPLARV--EQGRQWRMQVARD-----GQPARTRWRVLATGRDD 154
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ H +WL+L TGR HQ R HCA LG PI+GD +YG
Sbjct: 155 AGHPISWLELVLETGRTHQARAHCA-ALGCPILGDGRYG 192
>gi|251778563|ref|ZP_04821483.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243082878|gb|EES48768.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 302
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y+ALV G + GVI PLG+ K +R+ + + + A+T Y+V++
Sbjct: 166 MNREYYALVEGRFKNDSGVIDKPLGR-----DKKNRLKIAITE---DGRRAITHYEVLER 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 153
G T +K TGR HQ+RVH A LG P+VGD YG++ R K + H L
Sbjct: 218 YDTGCTLIKCKLETGRTHQIRVHMAS-LGHPLVGDPLYGFKKQRFKLKGQMLHAKKLG 274
>gi|188590369|ref|YP_001921578.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
gi|188500650|gb|ACD53786.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
Length = 302
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y+ALV G + GVI PLG+ K +R+ + + + A+T Y+V++
Sbjct: 166 MNREYYALVEGRFKNDSGVIDKPLGR-----DKKNRLKIAITE---DGRRAITHYEVLER 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 153
G T +K TGR HQ+RVH A LG P+VGD YG++ R K + H L
Sbjct: 218 YDTGCTLIKCKLETGRTHQIRVHMAS-LGHPLVGDPLYGFKKQRFKLKGQMLHAKKLG 274
>gi|392382035|ref|YP_005031232.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
gi|356877000|emb|CCC97801.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
Length = 339
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 57/222 (25%)
Query: 18 SSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + + R +++ YWA VG P+ +G I L K G +
Sbjct: 157 TSGVLLLARNTFAASKLTEQFRGRDVRKIYWAATVGVPKPYQGKIDLALAKEGGPQG--E 214
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ +D + AVT Y V++ ++ + P TGR HQLRVH +GTPI+GD
Sbjct: 215 RVAGDEDD----GKRAVTYYTVLENLGKQAAFVAMWPRTGRTHQLRVHM-NAIGTPILGD 269
Query: 134 YKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL 193
KY Q G L I Q +LHLH + + L
Sbjct: 270 GKYAGQ-----------------------------GAHLPGAEI---QKKLHLHARRLIL 297
Query: 194 PNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
P+ + + ++ APLP HM +W L
Sbjct: 298 PHPRGGNRMIDVT--------------APLPDHMLTTWKYLG 325
>gi|182417977|ref|ZP_02949285.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237667420|ref|ZP_04527404.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378148|gb|EDT75683.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237655768|gb|EEP53324.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 304
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+AL+ G + + G I PLG+ K DR+ + I + AVT Y+V++
Sbjct: 166 MKREYYALIEGRLKNNDGTIDKPLGRC-----KKDRLKI---GIIEDGKRAVTHYEVVE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+GYT +K TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 217 RYNGYTLVKCVLETGRTHQIRVHMASI-GFPLVGDPLYGFKRQK 259
>gi|114326764|ref|YP_743921.1| ribosomal large subunit pseudouridine synthase A [Granulibacter
bethesdensis CGDNIH1]
gi|114314938|gb|ABI60998.1| ribosomal large subunit pseudouridine synthase A [Granulibacter
bethesdensis CGDNIH1]
Length = 224
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 13/125 (10%)
Query: 15 IAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
IA+ + + M+ KR YWA+V G P ++G I L + ++G++ R
Sbjct: 71 IALRKTPLLEAQAMFAKGQAGKR-----YWAVVRGAPPAAEGRIDRKLSRRS-ESGEAGR 124
Query: 75 --ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+V + Q Q A T +++++ G +WL+LSPLTGR HQLRVHCA +LG PI+G
Sbjct: 125 GHWRMVEDAQ---GQSASTSWRIME-HQDGLSWLELSPLTGRTHQLRVHCA-LLGCPILG 179
Query: 133 DYKYG 137
D YG
Sbjct: 180 DPVYG 184
>gi|431904388|gb|ELK09773.1| RNA pseudouridylate synthase domain-containing protein 4 [Pteropus
alecto]
Length = 374
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 58/218 (26%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R + + YWA+ V P S GV+ P+ + VV DNGK ++
Sbjct: 179 RQVAKKYWAITVHIPVPSAGVVDIPIIEKVVQGQQQHHKMALSPSYRMDNGKMVKVRTSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N A AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 N-----AHMAVTQYQVLS-STLSSALLELQPVTGVKHQLRVHLSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 197
W + P LS + ++ +P+ K H LHLH +++ LP +
Sbjct: 291 ---DWNRLIPQKLSVGTLKKLGLPQSKARHIP--------------LHLHARQLILPALG 333
Query: 198 QAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
S+ E L LV LP + RS L
Sbjct: 334 --------------SRKEELSLVCKLPHYFVRSLSRLG 357
>gi|426371007|ref|XP_004052447.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Gorilla gorilla gorilla]
Length = 377
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRNRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLACPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|149566907|ref|XP_001518233.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like, partial [Ornithorhynchus anatinus]
Length = 301
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 34/184 (18%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITVVNNDQI-----------M 84
R + + YWA+ VG P S+GV+ P+ K V + ++T+ N +
Sbjct: 116 RQVAKTYWAVCVGVPVHSEGVVDIPIVEKEVQSQQQHHKMTLAPNYHLEDGKMVKRRVSR 175
Query: 85 SAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
A AVT+Y+ + SC T L+L P+TG KHQLRVH A LG PI+GD+KY
Sbjct: 176 DADSAVTQYRTLSGTTSC---TLLELRPITGVKHQLRVHLAFGLGCPILGDHKYS----- 227
Query: 143 KWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQK 202
W + P +++P GL+ + L LH + +TLP + +
Sbjct: 228 NWNKLAP--------QKLPPVILKSLGLEQRKSRYIP----LFLHAQRLTLPALGNRSRD 275
Query: 203 VQLS 206
+ L
Sbjct: 276 LDLE 279
>gi|147678153|ref|YP_001212368.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
gi|146274250|dbj|BAF59999.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
Length = 312
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R + R Y ALV G + G++ AP+G+ D ++ V+ + A+ AVTRY+
Sbjct: 163 KERQITRRYLALVHGLLKEQSGMVDAPIGR---DPRDRKKMAVLQKN----AKQAVTRYR 215
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V++ GYT+++L TGR HQ+RVH + + G P+VGD KYG
Sbjct: 216 VLE-RFKGYTYIELMLETGRTHQIRVHMSYI-GHPVVGDLKYG 256
>gi|197128104|gb|ACH44602.1| putative RIKEN cDNA 2410001E19 [Taeniopygia guttata]
Length = 283
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 27/165 (16%)
Query: 26 RVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD-RITVVNNDQIM 84
R+++K EK YWA+V+G P +GV+ P+ + V + +S ++T+ N ++
Sbjct: 95 RLLFKTRQVEK-----IYWAIVLGDPDPVEGVVEIPIVEKEVQSHQSHYKMTLAPNYRLC 149
Query: 85 S-------------AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
A+ AVTRY+ + + + L+L P+TG KHQ+RVH A LG PI+
Sbjct: 150 PEDGKVMKTRGSRHAERAVTRYRRLC-AASACSLLELQPVTGVKHQIRVHLAYGLGCPIL 208
Query: 132 GDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKE--KTLHFGLDLES 174
GD+KY W + P L + + + E K H L L +
Sbjct: 209 GDHKYS-----HWSKLAPQKLPEHTLRRLKLEQSKARHLPLHLHA 248
>gi|365900462|ref|ZP_09438334.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
gi|365418790|emb|CCE10876.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
Length = 257
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 83/206 (40%), Gaps = 70/206 (33%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSD--------------RITVVNND 81
+ + YWA+V G P +G I PLG+ + G K D R + N
Sbjct: 93 ISKTYWAVVEGGPTEDEGTIELPLGRRNAERGWWQKPDPEGQPAITKWRVLGRSSSRANV 152
Query: 82 QIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
Q S+ A T + TWL + P+TGR HQLRVH A +G PIVGD YG
Sbjct: 153 QADSSSSAATPSRPGGEVTQNLTWLAMEPVTGRTHQLRVHAA-AMGWPIVGDNIYG---- 207
Query: 142 RKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQ 201
FG +PRLHLH +E+++P +S+
Sbjct: 208 ----------------------NGPRFG-----------EPRLHLHAREISIP-LSKNKP 233
Query: 202 KVQLSSGCDVSKLETLKLVAPLPSHM 227
VQ++ AP+P+HM
Sbjct: 234 PVQVT--------------APVPAHM 245
>gi|302382665|ref|YP_003818488.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193293|gb|ADL00865.1| pseudouridine synthase, RluA family [Brevundimonas subvibrioides
ATCC 15264]
Length = 350
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ YWA+V+G P+ + G IS L K +++ + I + + A+ A T Y V
Sbjct: 187 RRQAKKTYWAIVMGLPKPADGQISVHLKKSGINDYE---IMRPADPKDPGAEPAETAYAV 243
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I + +W+ L P TGR HQLR H + +G PI+GD KYG
Sbjct: 244 ISHAAQRASWMALRPFTGRTHQLRAHM-KAIGHPILGDPKYG 284
>gi|338726497|ref|XP_003365339.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Equus caballus]
Length = 349
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 48/199 (24%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + YWA+ V P S GV+ P + ++ +A AVT+YQV+
Sbjct: 179 RQVAKKYWAITVRVPVPSAGVVDIP----------------IIEKEVRNAHVAVTQYQVL 222
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ L+L P TG KHQLRVH + L PI+GD+KY W + P LS +
Sbjct: 223 SNTL-SSALLELQPATGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGT 276
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
+++ GL + LHLH +++ LP + S+ E
Sbjct: 277 LKKL--------GLQQSKARHIP----LHLHARQLILPALG--------------SRKEE 310
Query: 217 LKLVAPLPSHMQRSWDVLN 235
L LV LP + RS + L
Sbjct: 311 LNLVCRLPRYFVRSLNRLG 329
>gi|270308540|ref|YP_003330598.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Dehalococcoides sp. VS]
gi|270154432|gb|ACZ62270.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides sp. VS]
Length = 302
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y LV G ++G I APLG+ D +I VV+N +HA T Y+
Sbjct: 162 KERTVRKYYLTLVKGELHPAEGFIEAPLGR---DPQNRQKIAVVSN-----GRHARTGYK 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
V++ GY+ L++ TGR HQ+RVH A + G P+ GD YG + +QF
Sbjct: 214 VLR-YIQGYSLLEVKLETGRTHQIRVHFAAI-GHPVAGDAIYGQKETWLKRQF 264
>gi|90421737|ref|YP_530107.1| pseudouridine synthase [Rhodopseudomonas palustris BisB18]
gi|90103751|gb|ABD85788.1| pseudouridine synthase [Rhodopseudomonas palustris BisB18]
Length = 240
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+V G P +G I P+G++ + G +I Q A T+++V+ G
Sbjct: 105 YWAVVEGGPIEDEGTIELPIGRLNAERGWWQKIDP-------EGQPATTKWRVLG-RGDG 156
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
TWL L P+TGR HQLRVH A +G PIVGD YG
Sbjct: 157 LTWLALQPVTGRTHQLRVHSA-AMGWPIVGDNIYG 190
>gi|163745572|ref|ZP_02152932.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
gi|161382390|gb|EDQ06799.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
Length = 348
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 85/206 (41%), Gaps = 49/206 (23%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVV---NNDQIMSAQHAVT 91
R ++ YWA+V G P G + L K +G+ +++ V + D A+ A T
Sbjct: 170 RETRKIYWAIVAGVPTPYLGEVKYGLVKAGGHGRSGEGEKMIAVHPRDMDATPGAKRAHT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y + +W+ + P+TGR HQLR H AE+ G PIVGD KYG
Sbjct: 230 LYATLFRVGSRASWVAMEPVTGRTHQLRAHMAEI-GHPIVGDGKYG-------------- 274
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGC 209
S +E L G + G I+ K +LHLH + M P+ + +
Sbjct: 275 ---GSGQE-----NLGDGWGAQLGGIISK--KLHLHARMMRFEHPHTRKPVT-------- 316
Query: 210 DVSKLETLKLVAPLPSHMQRSWDVLN 235
+ A LP HM SWD
Sbjct: 317 ---------ITAELPEHMAHSWDTFG 333
>gi|397498348|ref|XP_003819946.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Pan paniscus]
Length = 377
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|385799642|ref|YP_005836046.1| ribosomal large subunit pseudouridine synthase D [Halanaerobium
praevalens DSM 2228]
gi|309389006|gb|ADO76886.1| ribosomal large subunit pseudouridine synthase D [Halanaerobium
praevalens DSM 2228]
Length = 303
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + ++Y+AL+ G KG I AP+G+ D ++ V + +++A++R+++I
Sbjct: 163 RTVDKYYFALIEGNLAYKKGKIEAPIGR---DPNHRKKMAV----RKRHSKNAISRFKII 215
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
+ H YT +++ TGR HQ+RVH + LG PIVGD KYG + +
Sbjct: 216 EEFNH-YTLVEVKIETGRTHQIRVHFS-YLGHPIVGDQKYGSKNN 258
>gi|398824983|ref|ZP_10583295.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
gi|398224350|gb|EJN10660.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
Length = 236
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 78/189 (41%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YW +V G P +G I PLG++ + G K D Q AVT ++V+
Sbjct: 101 YWTVVEGGPAEDEGTIDMPLGRLNAERGWWQKPDP----------EGQKAVTNWKVMG-R 149
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G+TWL + P+TGR HQLRVH + G PI GD YG
Sbjct: 150 GDGFTWLAMEPVTGRTHQLRVHSSAT-GWPIFGDNIYG---------------------- 186
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P+LHLH +E+ +P +S+ E +++
Sbjct: 187 ----NGPRFG-----------EPKLHLHSREIVVP-ISR--------------NKEPVRV 216
Query: 220 VAPLPSHMQ 228
VAP P HM
Sbjct: 217 VAPAPPHMH 225
>gi|392380039|ref|YP_004987197.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356882406|emb|CCD03418.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 236
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 14 CIAVSSGIITVERV--MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
C+ + + ++R+ M+ EK YWA+ G P ++GVI PL K+++
Sbjct: 73 CLVLGRSLWALKRLGDMFAAGHVEKT-----YWAISEGIPETAEGVIDFPLLKLLIPGAW 127
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
+ +V + + Q AVT+Y+V+ + +G WL+L P TGR HQLRVH A + G P+V
Sbjct: 128 N----IVTHP---TGQPAVTQYKVLG-TGNGRAWLELRPRTGRTHQLRVHSAAI-GCPLV 178
Query: 132 GDYKYG 137
G+ YG
Sbjct: 179 GEPYYG 184
>gi|114641168|ref|XP_508851.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Pan troglodytes]
gi|410227542|gb|JAA10990.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
gi|410249832|gb|JAA12883.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
gi|410290532|gb|JAA23866.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
Length = 377
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|254466117|ref|ZP_05079528.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
gi|206687025|gb|EDZ47507.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
Length = 348
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 53/205 (25%)
Query: 40 QRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRITVV---NNDQIMSAQHAV 90
++ YWALV G P G++ AP GK +G+ +++ V + D A+ A
Sbjct: 173 RKIYWALVAGVPTPYLGEIKNGLVKAPGHGK----SGEGEKMINVHPRDIDDTPGAKRAH 228
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T Y + W+ + P+TGR HQLR H + +G PI GD KYG
Sbjct: 229 TLYATLYRVASRAAWVAMEPITGRTHQLRAHMSG-MGHPIAGDGKYGGSG---------- 277
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
++ + G + G ++ K +LHLH + M +
Sbjct: 278 ------------QENMGDGWGAQIGGVISK--KLHLHARRMVFEH--------------P 309
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
V++ + + +VAPLP HM+ SW+
Sbjct: 310 VTR-KPVSVVAPLPEHMKESWETFG 333
>gi|221316663|ref|NP_116184.2| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Homo sapiens]
gi|74731354|sp|Q96CM3.1|RUSD4_HUMAN RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|15559540|gb|AAH14131.1| RNA pseudouridylate synthase domain containing 4 [Homo sapiens]
Length = 377
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|14042050|dbj|BAB55086.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|350271342|ref|YP_004882650.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
gi|348596184|dbj|BAL00145.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
Length = 295
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 10/101 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
R Y A+ VG P ++GVI P+G+ D + V Q +V+RYQV+
Sbjct: 163 FHREYRAVCVGVPHPAEGVIDLPIGR--------DETSAVRRMVRPDGQPSVSRYQVLM- 213
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ G++ L+L P TGR HQLRVH A V G P+ GD+ YG +
Sbjct: 214 TRGGFSLLRLFPETGRTHQLRVHMAAV-GCPLAGDWLYGTE 253
>gi|119588079|gb|EAW67675.1| RNA pseudouridylate synthase domain containing 4, isoform CRA_a
[Homo sapiens]
gi|119588080|gb|EAW67676.1| RNA pseudouridylate synthase domain containing 4, isoform CRA_a
[Homo sapiens]
Length = 377
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|51011075|ref|NP_001003495.1| RNA pseudouridylate synthase domain-containing protein 4 [Danio
rerio]
gi|82182079|sp|Q6DBR0.1|RUSD4_DANRE RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|50418114|gb|AAH78405.1| Zgc:92006 [Danio rerio]
Length = 358
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 75/168 (44%), Gaps = 36/168 (21%)
Query: 43 YWALVVGTPRCSKGVISAP----------------LGKVVVDNGKSDRITVVNNDQIMSA 86
Y A+ VG P S+GVI P L + N D +T V + A
Sbjct: 178 YLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMALSPLFKVNEDGDGVTRVRAHR--QA 235
Query: 87 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
AVTRYQV+ + G + ++L PLTG K+QLRVH A L PI+GD+KY W +
Sbjct: 236 HAAVTRYQVLD-NTSGCSLVELQPLTGVKNQLRVHMALALTCPILGDHKYSH-----WSK 289
Query: 147 FHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
P +++P+ GL L LHLH + + LP
Sbjct: 290 LAP--------QKLPEGTLRRLGLVQSKTRYLP----LHLHSRRIVLP 325
>gi|312135211|ref|YP_004002549.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
owensensis OL]
gi|311775262|gb|ADQ04749.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
owensensis OL]
Length = 293
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y + + EKR +++ Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKETSGIVVFAKNSYFHSIVSREFEKRQVEKTYIAIVHGKLTKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
K D K + ++ D A T Y+VI S ++ LKL P+TGR HQLRVH
Sbjct: 182 -KRSQDGIKRE----IHQD----GSFASTYYEVID-SFENFSVLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYGWQ 139
+ + G PIVGDY YG Q
Sbjct: 232 SSI-GHPIVGDYIYGQQ 247
>gi|414164763|ref|ZP_11421010.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410882543|gb|EKS30383.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 245
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YWA+V G P ++G I PLG++ + G K D + + +R+ V+
Sbjct: 97 YWAVVEGGPAENEGEIDIPLGRLDAERGWWQKPDPNGLPSK----------SRWTVMG-R 145
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G TWL L P+TGR HQLRVHCA +G PIVGD YG
Sbjct: 146 GEGLTWLALEPITGRTHQLRVHCA-AMGFPIVGDNIYG 182
>gi|297269584|ref|XP_002799894.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Macaca mulatta]
Length = 346
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 80/182 (43%), Gaps = 51/182 (28%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+ V P S GV+ P +V+ AQ AVTRYQV+ S
Sbjct: 185 YWAITVRVPMPSAGVVDIP----IVEK---------------EAQVAVTRYQVLS-STLS 224
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
++L P+TG KHQLRVH + L PI+GD+KY W + P LS + +++
Sbjct: 225 SALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL-- 277
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 222
GL+ + LHLH +++ LP + S+ E L LV
Sbjct: 278 ------GLEQSKARYIP----LHLHAQQLILPALG--------------SRKEDLNLVCK 313
Query: 223 LP 224
LP
Sbjct: 314 LP 315
>gi|432857197|ref|XP_004068577.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Oryzias latipes]
Length = 398
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 35/189 (18%)
Query: 23 TVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD--------- 73
VE ++ +N+ +QR YW + VG P S+G++ P+ + V +
Sbjct: 185 VVEHILSLRRNNQ---VQRKYWVVAVGVPVPSEGLVDIPIIEREVAGSQPHFKMDLSPLF 241
Query: 74 RITVVNNDQIM-----SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
R++ + I A AVT+Y+V++ S G + ++L P T KHQ+RVH A L
Sbjct: 242 RMSDAGDGLIRVRGQRQAHPAVTKYRVLE-SGGGCSLVELQPFTEVKHQMRVHMAIALDC 300
Query: 129 PIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHC 188
PI+GD+KY +HR +K + +++P+ GL+ L LHLH
Sbjct: 301 PILGDHKY---SHR----------NKLAPQKLPEHMLKKLGLEQSQIRYLP----LHLHA 343
Query: 189 KEMTLPNVS 197
+++ LP S
Sbjct: 344 RQLILPARS 352
>gi|399077421|ref|ZP_10752399.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
gi|398035490|gb|EJL28731.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
Length = 329
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQ 94
+R Q+ YWA+V G P ++GVI L K G DR VV + + AQ A T +
Sbjct: 165 RRRAQKTYWAIVAGNPHPTEGVIELHLAK----RGVGDRELVVPAEPKDPDAQPAETEFV 220
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
I + TW+ L P TGR HQLR H + +G PI+GD KY
Sbjct: 221 SISRAGPRVTWMALRPHTGRTHQLRAHM-KAIGHPILGDPKY 261
>gi|329851361|ref|ZP_08266118.1| pseudouridine synthase, RluA family protein [Asticcacaulis
biprosthecum C19]
gi|328840207|gb|EGF89779.1| pseudouridine synthase, RluA family protein [Asticcacaulis
biprosthecum C19]
Length = 334
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQ 94
KR + YWALVVG P+ +G I PL + G DR V D + A+ A T Y
Sbjct: 170 KRRANKTYWALVVGNPKPEEGYIDTPL----IKKGFHDREIVQPADPKEPGAEPAETEYV 225
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I + W+ L P TGR HQLR H + +G I+GD KYG
Sbjct: 226 TIGRAGPRVAWMGLRPHTGRTHQLRAHM-QAIGHSILGDPKYG 267
>gi|117924690|ref|YP_865307.1| pseudouridine synthase [Magnetococcus marinus MC-1]
gi|117608446|gb|ABK43901.1| pseudouridine synthase [Magnetococcus marinus MC-1]
Length = 255
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ YWA+V G P ++G + PL K+ + VV+ +Q + ++T Y+V+
Sbjct: 93 VQKTYWAVVQGGPPQAQGSMDFPLYKI--STAQQGWRMVVDPEQ---GKSSLTLYRVLGR 147
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
S ++WL+L+P TGR HQ+RVHCA V G PI GD +YG
Sbjct: 148 SAT-HSWLELTPKTGRTHQIRVHCAHV-GLPIEGDLQYG 184
>gi|389856694|ref|YP_006358937.1| RluA family pseudouridine synthase [Streptococcus suis ST1]
gi|353740412|gb|AER21419.1| pseudouridine synthase, RluA family [Streptococcus suis ST1]
Length = 297
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++ C
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE--C 211
Query: 101 HG-YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW-QTHRKWKQF 147
G YT ++L+ TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 212 FGDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDEAYGARKTLKGHGQF 259
>gi|297583963|ref|YP_003699743.1| RluA family pseudouridine synthase [Bacillus selenitireducens
MLS10]
gi|297142420|gb|ADH99177.1| pseudouridine synthase, RluA family [Bacillus selenitireducens
MLS10]
Length = 307
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALVVGT KG + AP+G+ D ++TV +A+ AVT +QVI+
Sbjct: 166 RQYEALVVGTIPHEKGTVDAPIGR---DPQDRQKMTVTEE----NARDAVTHFQVIE-RM 217
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+GYT + TGR HQ+RVH + +G PIVGD KYG
Sbjct: 218 NGYTHVLCELETGRTHQIRVHM-KYIGYPIVGDPKYG 253
>gi|374572009|ref|ZP_09645105.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM471]
gi|374420330|gb|EHQ99862.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM471]
Length = 235
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YW +V G P +G I PLG++ + G K D Q A+T ++V+
Sbjct: 100 YWTIVEGGPTEEEGTIDMPLGRLNAERGWWQKPD----------PEGQKAITNWKVMG-R 148
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G TWL + P+TGR HQLRVH A G PI GD YG
Sbjct: 149 GGGLTWLAMEPVTGRTHQLRVH-ASATGWPIFGDNIYG---------------------- 185
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P+LHLH +E+ +P +S+ E +++
Sbjct: 186 ----NGPRFG-----------EPKLHLHSREIVVP-ISR--------------NKEPVRV 215
Query: 220 VAPLPSHMQ 228
VAP P HM
Sbjct: 216 VAPAPPHMH 224
>gi|197104733|ref|YP_002130110.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
gi|196478153|gb|ACG77681.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
Length = 325
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQV 95
R Q+ YWALV G P+ +GV+ PL K G DR +V D + A+ A T +
Sbjct: 166 RRTQKIYWALVAGLPKPGQGVLELPLAK----KGVGDREMMVPADPKDPRAETAETEFVT 221
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+ + W+ L P TGR HQLR H +G PI+GD KY
Sbjct: 222 LARAADKVAWMALWPHTGRTHQLRAHML-AMGHPILGDPKY 261
>gi|222529402|ref|YP_002573284.1| RluA family pseudouridine synthase [Caldicellulosiruptor bescii DSM
6725]
gi|222456249|gb|ACM60511.1| pseudouridine synthase, RluA family [Caldicellulosiruptor bescii
DSM 6725]
Length = 293
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y + + EKR + + Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKDTSGIVVFAKNSYFHSIVSYEFEKRRVDKTYIAIVHGILTKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
+ D+G I A T Y+VI S ++ LKL P+TGR HQLRVH
Sbjct: 182 KRS--DDGIKREIH-------QDGSFASTYYEVID-SFENFSVLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYGWQ 139
+ + G PIVGDY YG +
Sbjct: 232 SSI-GHPIVGDYIYGEE 247
>gi|126737039|ref|ZP_01752774.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
gi|126721624|gb|EBA18327.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
Length = 348
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 47/202 (23%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNN---DQIMSAQHAVTRYQ 94
++ YWALV G P G I L K +G+ +++ V+ D A+ A T Y
Sbjct: 173 RKIYWALVAGVPTPYLGEIKTGLVKAPGHGRSGEGEKMIPVHPRDIDDTPGAKRAHTHYA 232
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 154
+ +W+ + P+TGR HQLR H A +G PI GD KYG
Sbjct: 233 TLYRVASRASWVAMEPITGRTHQLRAHMA-AIGHPIAGDGKYGGSG-------------- 277
Query: 155 DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPN-VSQAIQKVQLSSGCDVSK 213
++ L G + G I+ K +LHLH + + + VS
Sbjct: 278 --------QENLGDGWGAQLGGIISK--KLHLHARRLVFEHPVSH--------------- 312
Query: 214 LETLKLVAPLPSHMQRSWDVLN 235
+ + + A LP HM+ SWD L
Sbjct: 313 -KPISVEAELPEHMKESWDTLG 333
>gi|422295479|gb|EKU22778.1| pseudouridine synthase [Nannochloropsis gaditana CCMP526]
Length = 241
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 28/107 (26%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R+ Q+ Y A+V+G P G + AP+ + AVTRY+
Sbjct: 92 ERRV-QKTYRAVVIGRPAEPAGQVLAPV----------------------EGKDAVTRYK 128
Query: 95 VIK----PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ P+ T ++L+P TGRKHQLR HC + LGTPI+GD +YG
Sbjct: 129 VVASVPSPAFDALTSIELNPETGRKHQLRQHC-QALGTPILGDLRYG 174
>gi|167645622|ref|YP_001683285.1| RluA family pseudouridine synthase [Caulobacter sp. K31]
gi|167348052|gb|ABZ70787.1| pseudouridine synthase, RluA family [Caulobacter sp. K31]
Length = 329
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQ 94
KR Q+ YWA+V G P ++GVI L K G DR VV + + Q A T +
Sbjct: 165 KRKAQKTYWAIVAGNPHPTEGVIELHLAK----RGVGDRELVVPAEPKDPDGQPAETEFV 220
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
I + TW+ L P TGR HQLR H + +G PI+GD KY
Sbjct: 221 SISRAGPRVTWMALRPHTGRTHQLRAHM-KAIGHPILGDPKY 261
>gi|187932847|ref|YP_001886621.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
gi|187721000|gb|ACD22221.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
Length = 302
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y+ALV G + G+I PLG+ K +R+ + + + A+T Y+V++
Sbjct: 166 MNREYYALVEGRFKNDSGIIDKPLGR-----DKKNRLKIAITE---DGRRAITHYEVLER 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 153
G T +K TGR HQ+RVH A LG P+VGD YG++ + K + H L
Sbjct: 218 YDTGCTLIKCKLETGRTHQIRVHMAS-LGHPLVGDPLYGFKKQKFKLKGQMLHAKKLG 274
>gi|381336840|ref|YP_005174615.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|356644806|gb|AET30649.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 312
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 27 VMYKDNDNEKRIL---------QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
+M ND R L QR Y+ALV G G I AP+G+ +D K I
Sbjct: 143 LMVAKNDKAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDRKKQAVIE- 201
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ AVT ++V+K GYT LK+S TGR HQ+RVH + +G P+VGD YG
Sbjct: 202 -------GGREAVTHFRVLKRYV-GYTLLKVSLETGRTHQIRVHMS-YIGHPVVGDPVYG 252
>gi|167771389|ref|ZP_02443442.1| hypothetical protein ANACOL_02755 [Anaerotruncus colihominis DSM
17241]
gi|167666029|gb|EDS10159.1| pseudouridine synthase, RluA family [Anaerotruncus colihominis DSM
17241]
Length = 292
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ Y ALV G P GVI AP+G+ D R+ V N + AVT Y+ +
Sbjct: 159 VEKQYIALVTGMPNPKHGVIDAPIGQP--DRKNPRRMIVAN------GKPAVTEYET-QI 209
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
C GY+ + TGR HQ+RVH A + G P++GD YG +T R +Q
Sbjct: 210 RCEGYSVVHCVLRTGRTHQIRVHMASI-GCPLLGDTLYGGETERIERQ 256
>gi|395846486|ref|XP_003795934.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Otolemur garnettii]
Length = 378
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 32/190 (16%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV-----VNNDQIMS----- 85
R + + YWA+ V P S GV+ P+ K V + ++T+ ++N +++
Sbjct: 180 RQVAKKYWAITVRVPVPSTGVVDIPIIEKEVQGQQQHHKMTLAPSYRMDNGKMVKVRSNR 239
Query: 86 -AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
A AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 240 HAHVAVTQYQVLS-STVSSALLELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DW 293
Query: 145 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 204
+ P LS + +++ GL + LHLH +++ LP + QK +
Sbjct: 294 NKLAPQKLSISTLKKL--------GLQQSKARHIP----LHLHARQLVLPALGP--QKEE 339
Query: 205 LSSGCDVSKL 214
L+ C + +
Sbjct: 340 LNLVCRLPRF 349
>gi|302871790|ref|YP_003840426.1| RluA family pseudouridine synthase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574649|gb|ADL42440.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
obsidiansis OB47]
Length = 293
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y + EKR +++ Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKETSGIVVFAKNSYFHSIVSREFEKRQVEKTYIAIVHGRLTKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
K D K + ++ D A T Y+VI +T LKL P+TGR HQLRVH
Sbjct: 182 -KRSQDGIKRE----IHQD----GSFASTYYEVID-CFENFTLLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYGWQ 139
+ + G PIVGDY YG Q
Sbjct: 232 SSI-GHPIVGDYIYGEQ 247
>gi|156402477|ref|XP_001639617.1| predicted protein [Nematostella vectensis]
gi|156226746|gb|EDO47554.1| predicted protein [Nematostella vectensis]
Length = 330
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN------DQIMSA-- 86
+ R++++ Y A+ VG PR +G IS P+G V G +RI + + +I A
Sbjct: 111 QSRMVKKRYLAVSVGVPRYEEGTISIPVGYGRV--GPWERIIIRQDLVGKTHKEITEAGF 168
Query: 87 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+ A+T+++++ + + L++ P+TG K Q+RVH A+ L PI+GD+K+ + + Q
Sbjct: 169 KQAITKFKILDENQSTCSLLEIEPITGHKQQIRVHLADALRCPILGDHKFS--SDKPQPQ 226
Query: 147 FHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL---EKQPRLHLHCKEMTLPNVSQAIQKV 203
P L + K G+D + G I Q LHLH ++ LP
Sbjct: 227 VIPLRLLQLLQISGVK------GVDGKKGRIRPWQRGQIPLHLHSHQLVLP--------- 271
Query: 204 QLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
+ +G D L + APLP + + LN
Sbjct: 272 KYHTGSD------LVISAPLPKYYLDTLSRLN 297
>gi|99080132|ref|YP_612286.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
gi|99036412|gb|ABF63024.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
Length = 348
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 53/205 (25%)
Query: 40 QRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRITVVNN---DQIMSAQHAV 90
++ YWALV G P G++ AP GK +G+ +++ V+ D A+ A
Sbjct: 173 RKIYWALVAGVPTPYLGEIKTGLVKAPGHGK----SGEGEKMIPVDPRDVDATPGAKRAH 228
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T Y + +W+ + P+TGR HQLR H A +G PI+GD KYG
Sbjct: 229 TYYATLYRVASRASWVAMEPVTGRTHQLRAHMAG-MGHPIIGDGKYGGSG---------- 277
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
++ L G + G ++ K +LHLH + + +
Sbjct: 278 ------------QENLGDGWGAQIGGLISK--KLHLHARRLQFEHPVTG----------- 312
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
+ + + A LP HM+ SWD
Sbjct: 313 ----KVVTVTAALPDHMKESWDTFG 333
>gi|426371009|ref|XP_004052448.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Gorilla gorilla gorilla]
Length = 346
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+ V P S GV+ P +V + AQ AVT+YQV+ S
Sbjct: 185 YWAITVHVPMPSAGVVDIP---------------IVEKE----AQVAVTQYQVLS-STLS 224
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
++L P+TG KHQLRVH + L PI+GD+KY W + P LS + +++
Sbjct: 225 SALVELQPITGIKHQLRVHLSFGLACPILGDHKYS-----DWNRLAPQKLSVGTLKKL-- 277
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
GL+ + LHLH +++ LP + +++ L
Sbjct: 278 ------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 310
>gi|259416795|ref|ZP_05740715.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
gi|259348234|gb|EEW60011.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
Length = 348
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 53/205 (25%)
Query: 40 QRWYWALVVGTP-----RCSKGVISAPL-GKVVVDNGKSDRITVVNN---DQIMSAQHAV 90
++ YWALV G P G++ AP GK +G+ +++ V+ D A+ A
Sbjct: 173 RKIYWALVAGVPTPYLGEIKTGLVKAPGHGK----SGEGEKMIPVDPRDVDATPGAKRAH 228
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T Y + +W+ + P+TGR HQLR H A +G PI+GD KYG
Sbjct: 229 TYYATLYRVASRASWVAMEPVTGRTHQLRAHMAG-MGHPIIGDGKYGGSG---------- 277
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
++ L G + G ++ K +LHLH + + +
Sbjct: 278 ------------QENLGDGWGAQIGGLISK--KLHLHARRLQFEHPVTG----------- 312
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
+ + + A LP HM+ SWD
Sbjct: 313 ----KVVTVTAALPDHMKESWDTFG 333
>gi|116618468|ref|YP_818839.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097315|gb|ABJ62466.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 312
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 27 VMYKDNDNEKRIL---------QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
+M ND R L QR Y+ALV G G I AP+G+ +D K I
Sbjct: 143 LMVAKNDKAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDRKKQAVIE- 201
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ AVT ++V+K GYT LK+S TGR HQ+RVH + +G P+VGD YG
Sbjct: 202 -------GGREAVTHFRVLKRYV-GYTLLKVSLETGRTHQIRVHMS-YIGHPVVGDPVYG 252
>gi|340759334|ref|ZP_08695906.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
gi|340577313|gb|EES64069.2| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
Length = 288
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 5 ITASHVYEKCIAVSSGIITVERVMYKDND-NEKRILQRWYWALVVGTPRCSKGVISAPLG 63
I Y + +SG+I V + Y + EK I+ ++Y A+V G + +I P+G
Sbjct: 119 IMVPRFYNRLDMNTSGLIIVAKNSYAQSFLQEKGIVNKFYKAIVKGIIEKDEFLIDKPIG 178
Query: 64 KVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA 123
KV D+ + I+V N Q A T+ +VIK T ++ LTGR HQ+R H A
Sbjct: 179 KVG-DDLRRREISVEN-----GGQEAQTKIKVIK-RLKDLTLIEAELLTGRTHQIRAHMA 231
Query: 124 EVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 181
+ G P++GD YG + R +Q S ++ S+ E + KT+ + + SIL ++
Sbjct: 232 -LEGYPLLGDELYGGEDKRAKRQMLHSYKTQFSDIETGELKTVEIDIPDDMKSILSEE 288
>gi|220924284|ref|YP_002499586.1| pseudouridine synthase [Methylobacterium nodulans ORS 2060]
gi|219948891|gb|ACL59283.1| pseudouridine synthase [Methylobacterium nodulans ORS 2060]
Length = 228
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV G P +G I PL + +SD + A+TR+++ G
Sbjct: 92 YWALVEGMPAAEEGAIDLPLAR------RSDDPRSWWMKPDPAGDPALTRWRLRGRGPDG 145
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 146 SAWLELEPVTGRTHQLRVHCA-AMGWPIRGDAIYG 179
>gi|383768639|ref|YP_005447702.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
gi|381356760|dbj|BAL73590.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
Length = 233
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 77/189 (40%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YW +V G P +G I PLG++ + G K D Q AVT ++V+
Sbjct: 98 YWTVVEGGPAEDEGTIDMPLGRLNAERGWWQKPDP----------DGQKAVTNWKVMG-R 146
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G TWL + P+TGR HQLRVH + G PI GD YG
Sbjct: 147 GEGLTWLAMEPVTGRTHQLRVHSSAT-GWPIFGDNIYG---------------------- 183
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P+LHLH +E+ +P I + + E +++
Sbjct: 184 ----NGPRFG-----------EPKLHLHSREIVVP-----ISRNK----------EPVRV 213
Query: 220 VAPLPSHMQ 228
VAP P HM
Sbjct: 214 VAPAPPHMH 222
>gi|429765557|ref|ZP_19297842.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429186008|gb|EKY26971.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 315
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 25/135 (18%)
Query: 18 SSGIITVER---------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SGI+ + + V +KD+ ++R Y+ALV G +G + P+ +
Sbjct: 153 TSGILVIAKNDDAHNSLAVQFKDHS-----IKREYYALVEGRFSTLEGTVDKPISR---- 203
Query: 69 NGKSDRITV-VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG 127
K DRI + +N+D + AVT Y+V++ G + +K + TGR HQ+RVH A + G
Sbjct: 204 -DKKDRIKMAINSD----GKRAVTHYEVLEQYDKGVSLIKCTLETGRTHQIRVHMASI-G 257
Query: 128 TPIVGDYKYGWQTHR 142
P+VGD YG++ +
Sbjct: 258 HPLVGDLVYGYKRQK 272
>gi|386399592|ref|ZP_10084370.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM1253]
gi|385740218|gb|EIG60414.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM1253]
Length = 233
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 67/189 (35%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YW +V G P +G I PLG++ + G K D Q A+T ++V+
Sbjct: 98 YWTIVEGGPTEDEGTIDMPLGRLNAERGWWQKPD----------PEGQKAITNWKVMG-R 146
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
G TWL + P+TGR HQLRVH + G PI GD YG
Sbjct: 147 GDGLTWLAMEPVTGRTHQLRVHSSAT-GWPIFGDNIYG---------------------- 183
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKL 219
FG +P+LHLH +E+ +P +S+ E +++
Sbjct: 184 ----NGPRFG-----------EPKLHLHSREIVVP-ISR--------------NKEPVRV 213
Query: 220 VAPLPSHMQ 228
VAP P HM
Sbjct: 214 VAPAPPHMH 222
>gi|451819459|ref|YP_007455660.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785438|gb|AGF56406.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 303
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+ALV G + KG+I PL + K DR+ + + + AVT Y+V++
Sbjct: 166 MKREYYALVEGRIKNDKGIIDKPLAR-----NKKDRLKM---GIVEGGKRAVTHYEVLE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+G++ +K TGR HQ+RVH A + G P+VGD YG++ +
Sbjct: 217 RYNGFSLIKCVLETGRTHQIRVHMASI-GFPLVGDPLYGFKKQK 259
>gi|381167871|ref|ZP_09877076.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380682947|emb|CCG41888.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 234
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+VVG PR +G+I PL K G R+ V + SA TR++++
Sbjct: 92 YWAIVVGRPREEEGLIELPLKKREAKFGW--RMDVEERGGLPSA----TRWRLLGGDGR- 144
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
+WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 145 LSWLECQPLTGRTHQIRAHCAAI-GHPLVGDAIYGRGT 181
>gi|408356929|ref|YP_006845460.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
gi|407727700|dbj|BAM47698.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
Length = 304
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R QR Y ALV G G I AP+G+ D + VVNN + A+T ++VI
Sbjct: 164 REAQRTYLALVHGAIPHEYGTIEAPIGRNPKD---RQSMAVVNN-----GKEAITYFEVI 215
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ YT +K S TGR HQ+RVH + +G PIVGD KYG
Sbjct: 216 ERINQKYTLIKCSLKTGRTHQIRVHL-KYIGFPIVGDPKYG 255
>gi|403262397|ref|XP_003923577.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Saimiri boliviensis boliviensis]
Length = 372
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 86/200 (43%), Gaps = 44/200 (22%)
Query: 43 YWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRITV-----------VNNDQIMSAQHAV 90
YWA+ V P S GV+ P + K + ++T+ V AQ AV
Sbjct: 185 YWAITVSVPMPSAGVVDIPIMEKEAQGQQQHHKMTLSPSYRMEDGKMVKMRSSRKAQVAV 244
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T+Y+V+ S ++L P+TG KHQLRVH + L P++GD+KY W + P
Sbjct: 245 TQYRVLS-STLSSALMELHPITGIKHQLRVHLSFGLDCPVLGDHKYS-----DWNKLAPQ 298
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
LS + +++ GL + LHLH +++ LP +
Sbjct: 299 KLSVGTLKKL--------GLKQSKARYIP----LHLHARQLILPALG------------- 333
Query: 211 VSKLETLKLVAPLPSHMQRS 230
S+ E L LV LP RS
Sbjct: 334 -SRKEELNLVCKLPHFFARS 352
>gi|119383542|ref|YP_914598.1| RluA family pseudouridine synthase [Paracoccus denitrificans
PD1222]
gi|119373309|gb|ABL68902.1| ribosomal large subunit pseudouridine synthase C [Paracoccus
denitrificans PD1222]
Length = 348
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPR-----CSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
R+ ++ YWA V G P G++ AP + K + A+ A T
Sbjct: 170 RLTRKIYWAAVAGVPHPRMGSIKYGLVKAPGRGRGGEGEKMMAVHPSAVAATEGAKRAHT 229
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
Y V+ +W+ + P+TGR HQLR H AE+ G PIVGD KYG
Sbjct: 230 DYAVLDALGGRVSWVAMVPVTGRTHQLRAHMAEI-GHPIVGDGKYG-------------- 274
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E L G + G + + +LHLH + + I K
Sbjct: 275 ---GSGQE-----NLGDGWGAQLGGEISR--KLHLHARMIRF---EHPITK--------- 312
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + + APLP HM R+W L
Sbjct: 313 ---KLITVTAPLPEHMSRTWKTLG 333
>gi|414176666|ref|ZP_11430895.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410886819|gb|EKS34631.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 243
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 69/194 (35%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQV 95
+ + YWA+V G+P ++G I PLG++ + G K D + + T ++V
Sbjct: 93 IDKTYWAVVEGSPDANEGEIDIPLGRLDAERGWWQKPDPNGLPSR----------TTWKV 142
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
+ G TWL + P+TGR HQLRVHCA G PIVGD YG
Sbjct: 143 MG-RGDGLTWLAMEPITGRTHQLRVHCA-ASGWPIVGDNIYG------------------ 182
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
FG +P LHLH +E+ +P +SK +
Sbjct: 183 --------NGPRFG-----------EPSLHLHAREIVIP----------------LSKNK 207
Query: 216 -TLKLVAPLPSHMQ 228
++++AP+P+H+
Sbjct: 208 PPVRVIAPVPAHLH 221
>gi|407005750|gb|EKE21798.1| hypothetical protein ACD_7C00125G0001 [uncultured bacterium]
Length = 316
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SGI+ + + + +K EK I ++ Y A+ G P KG I PL +
Sbjct: 150 TSGILIIAKNIKSFLEFKTMFKEKTIAKK-YLAISYGIPLERKGTIDKPLARTT----NY 204
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+ T+ + A+T Y+VIK ++ +++SP TGR HQ+RVH + + G PIVG
Sbjct: 205 RKQTIAGKRTKTKIREALTNYEVIKDLGENFSLIEVSPQTGRTHQIRVHLSAI-GHPIVG 263
Query: 133 DYKYGWQTHRKWK 145
D Y + + K++
Sbjct: 264 DNLYRKKNYEKFE 276
>gi|349700727|ref|ZP_08902356.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter europaeus LMG 18494]
Length = 252
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+V GTP ++GVI PL + V+ G+ R+ V Q A TR++V G
Sbjct: 102 YWAIVQGTPGTAQGVIDTPLAR--VEQGRQWRMQPVKT----GGQPARTRWRVRGTGHDG 155
Query: 103 ----YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
TWL+L TGR HQ R HCA + G PI GD +YG
Sbjct: 156 AGQPITWLELVLETGRTHQARAHCAAI-GCPIRGDTRYG 193
>gi|261414686|ref|YP_003248369.1| pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371142|gb|ACX73887.1| pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 386
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Query: 38 ILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
++ ++Y+ALV G + +G IS L + D+ K ++ V +D+ +AQ A+T Y+V K
Sbjct: 226 VVDKFYFALVKGNLKKDRGTISESL--LRTDSAKGSKMLVGQDDE--NAQKAITHYRV-K 280
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GY +K+ TGR HQ+R H A + G P++GD +YG
Sbjct: 281 QHYEGYDLVKIKLETGRMHQIRAHFASI-GHPLLGDTRYG 319
>gi|156230593|gb|AAI52263.1| Zgc:92006 protein [Danio rerio]
Length = 358
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 36/168 (21%)
Query: 43 YWALVVGTPRCSKGVISAP-LGKVVVD---------------NGKSDRITVVNNDQIMSA 86
Y A+ VG P S+GVI P + + VV N D +T V + A
Sbjct: 178 YLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMALSPLFKVNEDGDGVTRVRAHR--QA 235
Query: 87 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
AVTRY+V+ + G + ++L PLTG K+QLRVH A L PI+GD+KY W +
Sbjct: 236 HAAVTRYRVLD-NTSGCSLVELQPLTGVKNQLRVHMALALTCPILGDHKYSH-----WSK 289
Query: 147 FHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
P +++P+ GL L LHLH + + LP
Sbjct: 290 LAP--------QKLPEGTLRRLGLVQSKTRYLP----LHLHSRRIVLP 325
>gi|255263430|ref|ZP_05342772.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
gi|255105765|gb|EET48439.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
Length = 347
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 45/206 (21%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVV--DNGKSDRITVVNNDQIM---SAQHA 89
++R ++ YWA V G P + G + L K G+++++ ++ ++ A+ A
Sbjct: 167 KERETRKIYWAAVGGVPHPAMGTVRWGLIKSGGHGRGGENEKMRCIHPREVEHTPGAKRA 226
Query: 90 VTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP 149
T Y ++ W+ L P+TGR HQLR H AE +G PI+GD KYG
Sbjct: 227 TTDYALLDRLGSRAAWIALVPVTGRTHQLRAHMAE-MGHPIIGDGKYG------------ 273
Query: 150 SDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGC 209
S +E + G +G E +LHLH + ++ + +
Sbjct: 274 -----GSGQE-------NLGDGWGAGMGEEIGRKLHLHARSLSFTHPATG---------- 311
Query: 210 DVSKLETLKLVAPLPSHMQRSWDVLN 235
+ + L A LP HM+ +WD +
Sbjct: 312 -----KRVNLTASLPEHMKHTWDFVG 332
>gi|57233860|ref|YP_182086.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
ethenogenes 195]
gi|57224308|gb|AAW39365.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides ethenogenes 195]
Length = 300
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++++Y LV G ++G I APLG+ D +I VV+N + + V RY
Sbjct: 160 KERTVRKYYLTLVQGELHPAEGFIEAPLGR---DPQNRQKIAVVSNGRPARTGYKVLRY- 215
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
GY+ L++ TGR HQ+RVH A +G P+ GD YG + +QF
Sbjct: 216 -----IQGYSLLEVKLETGRTHQIRVHFA-AIGHPVAGDAVYGQKETWLKRQF 262
>gi|57239048|ref|YP_180184.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|58578991|ref|YP_197203.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|57161127|emb|CAH58040.1| putative ribosomal large subunit pseudouridine synthase C
[Ehrlichia ruminantium str. Welgevonden]
gi|58417617|emb|CAI26821.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
Length = 305
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
N+ + R +++ Y AL G P G I P+ K K IT+ N M Q AVT
Sbjct: 161 NEFKDRKVKKKYLALTCGIPDDDFGQIDYPIVK------KKHGITLEKNMSFM--QQAVT 212
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW---QTHRKWKQFH 148
+ ++ + L L P+TGRKHQ+R+H + + G PIVGD KYG + Q H
Sbjct: 213 MFSTLRKLPNDIGLLDLQPITGRKHQIRIHLSRI-GCPIVGDVKYGKICDSISNDYLQLH 271
Query: 149 PSDLS 153
LS
Sbjct: 272 AYFLS 276
>gi|144898737|emb|CAM75601.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 226
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YW +V GTP G ISAP+ KV GK +++ + Q AVTR++V+
Sbjct: 88 VEKAYWTVVHGTPPEDTGEISAPIHKV---TGKGGWRIIIDA----AGQPAVTRWRVLG- 139
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G +W++ +PLTGR HQ+RVH LG P+ GD YG
Sbjct: 140 RGDGLSWIECTPLTGRTHQIRVHMKH-LGCPVRGDVYYG 177
>gi|291532509|emb|CBL05622.1| pseudouridine synthase, RluA family [Megamonas hypermegale ART12/1]
Length = 288
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 14/106 (13%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV--VNNDQIMSAQHAVT 91
N + QR+Y+ALV G +G I+AP+G+ K D I + VN++ +HA+T
Sbjct: 152 NNHQKFQRYYYALVHGKLSQKQGQINAPIGR------KKDSIILHEVNDE----GKHAIT 201
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Y VIK Y+ ++L TGR HQ+RVH + LG P++GD YG
Sbjct: 202 NYHVIK-EFENYSLIELWLETGRTHQIRVHMS-YLGHPLLGDDLYG 245
>gi|312127537|ref|YP_003992411.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
hydrothermalis 108]
gi|311777556|gb|ADQ07042.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
hydrothermalis 108]
Length = 293
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y + + EKR + + Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKETSGIVVFAKNSYFHSIVSYEFEKRRVDKTYIAIVHGRLTKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
+ D+G I A T Y+VI + ++ LKL P+TGR HQLRVH
Sbjct: 182 KRS--DDGIKREIH-------QDGSFASTYYEVID-TFENFSVLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYGWQ 139
+ + G PIVGDY YG +
Sbjct: 232 SSI-GHPIVGDYIYGEE 247
>gi|392382839|ref|YP_005032036.1| pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877804|emb|CCC98656.1| pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 350
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 84/200 (42%), Gaps = 41/200 (20%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R L R Y ALV G P +G I +G+ D K + VV +HA TRY+V+
Sbjct: 191 RTLSRTYQALVWGVPSPREGRIEGNIGRSSTDRKK---MAVVTG----GGKHAATRYRVV 243
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ ++ + TGR HQ+RVH A + G PIVGD YG + H S L
Sbjct: 244 RSFGTALALVECTLETGRTHQIRVHMAHI-GHPIVGDPLYGKGRAGRAGGKHASALP--- 299
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
E +E+ + F PR LH +T + + ET
Sbjct: 300 --EPDRERFVGF-------------PRQALHAVGLTFRHPATG---------------ET 329
Query: 217 LKLVAPLPSHMQRSWDVLNS 236
++ APLP+ ++ D L S
Sbjct: 330 VRFQAPLPTDIKDLSDFLES 349
>gi|88608500|ref|YP_506438.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
gi|88600669|gb|ABD46137.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
Length = 305
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R++++ Y A+V+G + KGV+ + KV+ K + + NN I + +HA+T++ VI
Sbjct: 165 RLVKKSYLAIVIGELKEKKGVVDCYINKVLF---KGEEVMQCNN--IGNGEHAITQFHVI 219
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
K + ++L PLTGRKHQ+R A + G P++ D KYG
Sbjct: 220 K-KFKNTSLIELFPLTGRKHQIRSQMASI-GHPVLNDGKYG 258
>gi|359407956|ref|ZP_09200429.1| pseudouridine synthase, RluA family [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677022|gb|EHI49370.1| pseudouridine synthase, RluA family [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 319
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
++ + + Y ALV+G P ++G I+APL K GK +V+ D + Q AVT +
Sbjct: 167 QKTINKAYLALVIGDP-GAEGRINAPLRKA---GGKGAEKMIVDQD---TGQTAVTDFLR 219
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+ + + L L P+TGR HQLRVH A V GTPI+GD KY
Sbjct: 220 LDKAGP-VSLLALRPVTGRTHQLRVHMAAV-GTPILGDGKY 258
>gi|33239671|ref|NP_874613.1| pseudouridylate synthase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237196|gb|AAP99265.1| 23S RNA-specific pseudouridylate synthase [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 318
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KRI R Y ALV G P KG+ISAP+G+ +D K VVN+ S + A T ++
Sbjct: 175 QKRIASRRYIALVHGVPHGDKGIISAPIGRHPIDRKK---YAVVNDG---SGRDACTHWE 228
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+K Y+ L TGR HQ+RVH A + G PI+GD Y
Sbjct: 229 -LKERLGDYSLLSFKLETGRTHQIRVHSAHI-GHPILGDPTY 268
>gi|372271855|ref|ZP_09507903.1| ribosomal large subunit pseudouridine synthase C [Marinobacterium
stanieri S30]
Length = 324
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG I V + + Y + +R + + Y ALVVG K I APL + + +G +
Sbjct: 150 TSGCIMVAKKRSMLRYLHDALRQRKVNKIYHALVVGRWEKRKQAIDAPLLRYELKSG--E 207
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ VN D + +VTR+QV++ T ++ PLTGR HQ+RVH + G PIVGD
Sbjct: 208 RMVKVNPD----GKPSVTRFQVLRRFQDAATLIEARPLTGRTHQIRVHT-QYAGHPIVGD 262
Query: 134 YKY 136
KY
Sbjct: 263 VKY 265
>gi|221316667|ref|NP_001138299.1| RNA pseudouridylate synthase domain-containing protein 4 isoform b
[Homo sapiens]
Length = 346
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 37/163 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+ V P S GV+ P +V + AQ AVT+YQV+ S
Sbjct: 185 YWAITVHVPMPSAGVVDIP---------------IVEKE----AQVAVTQYQVLS-STLS 224
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
++L P+TG KHQLRVH + L PI+GD+KY W + P LS + +++
Sbjct: 225 SALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL-- 277
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
GL+ + LHLH +++ LP + +++ L
Sbjct: 278 ------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 310
>gi|293375853|ref|ZP_06622121.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325844995|ref|ZP_08168320.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
gi|292645532|gb|EFF63574.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325488968|gb|EGC91358.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
Length = 299
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 18 SSGIITVERVM---YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
S GII + M D ++ ++RWY ALV G + KG I AP+GK DR
Sbjct: 143 SGGIIFAKHFMAHSLMDYQLSEKQIRRWYLALVSGNLKTRKGRIDAPIGK--------DR 194
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
+ AVT Y+V K Y+ ++L TGR HQ+RVH + LG P++GD
Sbjct: 195 HHRARRRVAKNGDQAVTLYEV-KKQFKTYSLVELELKTGRTHQIRVHMSH-LGHPLLGDV 252
Query: 135 KYG 137
YG
Sbjct: 253 LYG 255
>gi|297172088|gb|ADI23070.1| pseudouridylate synthases, 23S RNA-specific [uncultured gamma
proteobacterium HF0770_07M15]
Length = 277
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH-AVTRY 93
E R + ++YWA+V G S+G I APLG D VV D + H + TRY
Sbjct: 109 ESREVDKYYWAIVHGHVPESEGTIDAPLGS-------DDASEVVVKDCVRDDGHPSQTRY 161
Query: 94 QV---IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +TWL+++P+TGRKHQ+R+H LG IVGD YG
Sbjct: 162 WTQWKFERDDEKFTWLRVAPVTGRKHQIRIHLQH-LGHAIVGDKLYG 207
>gi|323448015|gb|EGB03919.1| hypothetical protein AURANDRAFT_33292 [Aureococcus anophagefferens]
Length = 259
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y V+G P + G + P+GKV D G +R+ VV + + + T +
Sbjct: 111 EAREVEKSYVGAVLGWPEATFGTVDEPIGKVKTDAGH-NRVAVVA--EADGGRRSRTNWA 167
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+++ G + L L P+TGR QLRVHCA ++G P++GD +G +
Sbjct: 168 LLEKRDDGSSLLSLQPVTGRSQQLRVHCA-LIGLPLLGDALHGTE 211
>gi|218530900|ref|YP_002421716.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218523203|gb|ACK83788.1| pseudouridine synthase [Methylobacterium extorquens CM4]
Length = 239
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV G P +G I PL K D R + D + ++T Y+V+ S G
Sbjct: 102 YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLGQS-EG 154
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 155 LSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|407783425|ref|ZP_11130626.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
gi|407202150|gb|EKE72145.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
Length = 222
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ + YWA+V G P+ G I PL K+ N KS VV+ Q + T ++V+
Sbjct: 83 IDKTYWAVVAGGPQEEAGHIDRPLSKL---NKKSGWKMVVDP----QGQPSQTDFRVLGR 135
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
S G WL+L PLTGR HQLR+HC+ +G PI+GD YG
Sbjct: 136 S-EGICWLELKPLTGRTHQLRIHCSS-MGWPILGDPVYG 172
>gi|170741578|ref|YP_001770233.1| pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168195852|gb|ACA17799.1| pseudouridine synthase [Methylobacterium sp. 4-46]
Length = 228
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV G P +G I L + D R + D + A+TR+++ S G
Sbjct: 92 YWALVDGAPAAEEGEIDLALARRSEDP----RSWWMRADP--AGDPALTRWRLRGRSPEG 145
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK--QFHPSDLS 153
WL+L P+TGR HQLRVHCA +G PI GD YG R Q H LS
Sbjct: 146 GAWLELEPVTGRTHQLRVHCA-AMGWPIRGDAVYGAAPRRGGPGLQLHARSLS 197
>gi|209809356|ref|YP_002264894.1| putative RNA pseudouridylate synthase [Aliivibrio salmonicida
LFI1238]
gi|208010918|emb|CAQ81323.1| putative RNA pseudouridylate synthase [Aliivibrio salmonicida
LFI1238]
Length = 561
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ Y AL+ G + G+I PL + D + +V++ Q + A T +QVI
Sbjct: 435 RTVEKRYTALLEGNIALNDGIIDLPLTGDLEDRPRQ----MVDHKQ---GRKAETTFQVI 487
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEV--LGTPIVGDYKYGWQTHR 142
+ + + T + L P TGR HQLRVHCA LGTPIVGD YG++++R
Sbjct: 488 ERN-NNQTKVYLYPKTGRTHQLRVHCAHQAGLGTPIVGDDLYGFKSNR 534
>gi|374307914|ref|YP_005054345.1| RluA family pseudouridine synthase [Filifactor alocis ATCC 35896]
gi|291166075|gb|EFE28121.1| pseudouridine synthase, RluA family [Filifactor alocis ATCC 35896]
Length = 298
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 18 SSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + Y ++ ++Q+ Y AL+ G + +G I+AP+G+ D
Sbjct: 141 TSGILLIAKNRYAHHRMSQAHQDMMMQKTYVALIEGKMKRQEGEINAPIGRRENDG---- 196
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ + + Q A+T+Y+V+K ++ ++L+P+TGR HQLR H A +G P++GD
Sbjct: 197 ----IKREVMEDGQTAITKYKVLKEG-EKFSLVELTPVTGRTHQLRCHMA-YIGYPLIGD 250
Query: 134 YKYG 137
YG
Sbjct: 251 SLYG 254
>gi|348573905|ref|XP_003472731.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Cavia porcellus]
Length = 345
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 36/169 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + YWA+ V P S GV+ P ++ + +A+ AVT+YQV+
Sbjct: 177 RQVAKKYWAVTVRVPVPSAGVVDIP---------------IIEKE---NARVAVTQYQVL 218
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
S ++L P+TG KHQLRVH + L P++GD+KY W + P
Sbjct: 219 S-STVSSALVELQPVTGIKHQLRVHLSFGLDCPVLGDHKYS-----AWNKLAP------- 265
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+++P GL+ + LHLH +++TLP + +++QL
Sbjct: 266 -QKLPAGTLKRLGLEQSKARYIP----LHLHARQLTLPPLGFRKEELQL 309
>gi|299133083|ref|ZP_07026278.1| pseudouridine synthase [Afipia sp. 1NLS2]
gi|298593220|gb|EFI53420.1| pseudouridine synthase [Afipia sp. 1NLS2]
Length = 244
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
YWA+V G P ++G I PLG++ G K D + + +R+ V+
Sbjct: 97 YWAVVEGGPAENQGEIDIPLGRLDETRGWWQKPDPNGLPSQ----------SRWSVMG-R 145
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G TWL L P+TGR HQLRVHCA +G PIVGD YG
Sbjct: 146 GDGLTWLALEPITGRTHQLRVHCA-AMGFPIVGDNIYG 182
>gi|427703989|ref|YP_007047211.1| RluA family pseudouridine synthase [Cyanobium gracile PCC 6307]
gi|427347157|gb|AFY29870.1| pseudouridine synthase, RluA family [Cyanobium gracile PCC 6307]
Length = 316
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++RI R Y A+V G P G I A +G+ VD K +T + +HA T ++
Sbjct: 170 QQRIASREYLAVVHGRPAAESGTIVAAIGRHPVDRKKYAVVTDA------TGRHACTHWR 223
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+I+P Y L+ TGR HQ+RVHCA G PIVGD YG
Sbjct: 224 LIEP-LGDYALLRFKLDTGRTHQIRVHCAHT-GHPIVGDATYG 264
>gi|330995758|ref|ZP_08319655.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
gi|329574488|gb|EGG56053.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
Length = 522
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 60/113 (53%), Gaps = 16/113 (14%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVT 91
E R +++ Y AL+ GT +G I PL D + Q++S H AVT
Sbjct: 394 ETRHIKKRYVALLDGTVTDDEGFIRLPLCPNPDDRPR----------QMVSTAHGKAAVT 443
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHR 142
R++V+ SC G T + PLTGR HQLRVH A E L TPIVGD YG + R
Sbjct: 444 RFEVLSRSC-GQTRVAFYPLTGRTHQLRVHAAHPEGLDTPIVGDNLYGRRASR 495
>gi|159900009|ref|YP_001546256.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
gi|159893048|gb|ABX06128.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
Length = 560
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ Y ALV G P ++GVI A L D + V + AQ A+T Y+V+
Sbjct: 83 IEKTYQALVYGVPIQTQGVIDAALAPA------GDGMIQVASAHDRRAQSAITHYRVLVS 136
Query: 99 SC-HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
S ++ L+L P TGR HQLRVHC E LG PIVGD Y H S+L
Sbjct: 137 SPDQRFSLLELQPKTGRTHQLRVHC-ECLGHPIVGDPLYDVARAAPRLMLHASEL 190
>gi|309800529|ref|ZP_07694680.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
gi|308115840|gb|EFO53365.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis SK1302]
Length = 297
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +TV + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTV-------KGKPAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|254420499|ref|ZP_05034223.1| RNA pseudouridine synthase family [Brevundimonas sp. BAL3]
gi|196186676|gb|EDX81652.1| RNA pseudouridine synthase family [Brevundimonas sp. BAL3]
Length = 241
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R ++ Y AL+ P + G I APL + + G+ + VV D AQ + +RY+
Sbjct: 95 QMRRFRKQYLALLSAAPEPASGTIDAPLRREEI--GRESYMRVVAFDAP-GAQGSQSRYR 151
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ + G ++L PLTGR HQLRVH A LG P++GD +YG
Sbjct: 152 TLAANDQGAV-VELEPLTGRMHQLRVHMAH-LGRPLIGDVRYG 192
>gi|251772724|gb|EES53286.1| Ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum ferrodiazotrophum]
Length = 313
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + Y AL +G P +G+I AP+G+ NG + V + + + TRY+V+
Sbjct: 162 RTVSKSYIALAIGIPPSRRGLIDAPIGR---SNGDRKKFAVTSG-----GKPSQTRYRVM 213
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
GY+ L ++ LTGR HQ+RVH LG P+ GD Y
Sbjct: 214 TAYREGYSLLDITLLTGRTHQIRVHMQH-LGYPLAGDPVY 252
>gi|397689928|ref|YP_006527182.1| pseudouridine synthase [Melioribacter roseus P3M]
gi|395811420|gb|AFN74169.1| pseudouridine synthase [Melioribacter roseus P3M]
Length = 218
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 21/108 (19%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPL-----GKVVVDNGKSDRITVVNNDQIMSAQHA 89
E R + + Y ALV+G P +G+I+ PL G++ VD K + +
Sbjct: 77 ESRNVHKTYKALVIGKPEYEEGIINNPLRQFGSGRMGVDEKK--------------GKPS 122
Query: 90 VTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
T Y+V+ +T +KL+PLTGR+HQLRVH + G PI GD KYG
Sbjct: 123 ETYYEVLN-YYDVHTLVKLNPLTGRRHQLRVHMYSI-GCPIAGDLKYG 168
>gi|375086810|ref|ZP_09733206.1| RluA family pseudouridine synthase [Megamonas funiformis YIT 11815]
gi|374564112|gb|EHR35415.1| RluA family pseudouridine synthase [Megamonas funiformis YIT 11815]
Length = 288
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 14/106 (13%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV--VNNDQIMSAQHAVT 91
N + QR+Y+ALV G +G I+AP+G+ K D I + VN++ ++A+T
Sbjct: 152 NNHQKFQRYYYALVHGKLSQKEGQINAPIGR------KKDSIILHEVNDE----GKYAIT 201
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Y+VIK Y+ +KL TGR HQ+RVH + LG P++GD YG
Sbjct: 202 NYRVIK-EFENYSLIKLWLETGRTHQIRVHMS-YLGHPLLGDDLYG 245
>gi|282881245|ref|ZP_06289932.1| pseudouridine synthase, RluA family [Prevotella timonensis CRIS
5C-B1]
gi|281305049|gb|EFA97122.1| pseudouridine synthase, RluA family [Prevotella timonensis CRIS
5C-B1]
Length = 566
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1 MLSSITASHVYEKCIAVSSGIITVER-VMYKDNDNEKRI--LQRWYWALVVGTPRCSKGV 57
M SS+ V+ +A S +I + V+Y+ + R +Q+ Y A++ G +GV
Sbjct: 389 MPSSVELFSVHRLDMATSGLLILAKNSVVYRHLQRQFRTHHIQKEYIAILEGALSQREGV 448
Query: 58 ISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVTRYQVIKPSCHGYTWLKLSPLTGR 114
++ PL D + Q++ +H AVT Y+V+ HG TW+ L P TGR
Sbjct: 449 VTLPLRPDPFDRPR----------QVVDWEHGKKAVTSYRVLNVR-HGKTWVALFPETGR 497
Query: 115 KHQLRVHC--AEVLGTPIVGDYKYGWQTHRKW 144
HQLR+HC AE L PI+GD YG +R +
Sbjct: 498 THQLRMHCAHAEGLNCPILGDPLYGHHANRLY 529
>gi|68171700|ref|ZP_00545058.1| Pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa]
gi|67998881|gb|EAM85575.1| Pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa]
Length = 146
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R +++ Y AL G P+ G I+ ++ N +S + VN+ + Q AVT +
Sbjct: 4 KNRRVEKKYLALTQGIPKNDIGQINHS----IIKNKRSLSLDKVNDSYL---QEAVTSFS 56
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+K +G L+L P+TGRKHQ+R+H + + G I+GD KYG
Sbjct: 57 VLKKLPYGIGLLELKPITGRKHQIRIHLSHI-GCSIIGDKKYG 98
>gi|385789666|ref|YP_005820789.1| putative ribosomal large subunit pseudouridine synthase C
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|302325509|gb|ADL24710.1| putative ribosomal large subunit pseudouridine synthase C
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 411
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Query: 38 ILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
++ ++Y+ALV G + +G IS L + D+ K ++ V +D+ +AQ A+T Y+V K
Sbjct: 251 VVDKFYFALVKGNLKKDRGTISESL--LRTDSAKGSKMLVGQDDE--NAQKAITHYRV-K 305
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GY +K+ TGR HQ+R H A + G P++GD +YG
Sbjct: 306 QHYEGYDLVKIKLETGRMHQIRAHFASI-GHPLLGDTRYG 344
>gi|227431875|ref|ZP_03913898.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352342|gb|EEJ42545.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 312
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
QR Y+ALV G G I AP+G+ +D K I + AVT ++V+K
Sbjct: 165 QRVYYALVRGEFTEDSGTIEAPIGRHKIDRKKQAVIE--------GGREAVTHFRVLKRY 216
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT LK++ TGR HQ+RVH + +G P+VGD YG
Sbjct: 217 V-GYTLLKVNLETGRTHQIRVHMS-YIGHPVVGDPVYG 252
>gi|420245965|ref|ZP_14749488.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398044520|gb|EJL37336.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 340
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 23/153 (15%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT-VVNNDQIMSAQHAVTRYQVI- 96
L+R Y A+V G PR KG I APLG+ DR V + A+ A+T YQVI
Sbjct: 181 LERAYQAVVWGRPRGLKGTIDAPLGRA------GDRTKRAVQKEDSSDAREAITHYQVIE 234
Query: 97 ----KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVG--DYKYGWQTHRKWKQFHP 149
KP L L TGR HQ+RVH A + G P++G DY G++T K
Sbjct: 235 RFHEKPDATALAALIECRLETGRTHQIRVHMAHI-GHPLIGDQDYSAGFKT----KANLL 289
Query: 150 SDLSKDSNEEIPKEKTLHFGLDLE---SGSILE 179
D +K P++ F L E +G ++E
Sbjct: 290 PDFAKGVVNRFPRQALHAFLLAFEHPRTGEVME 322
>gi|241896496|ref|ZP_04783792.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241870218|gb|EER73969.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 304
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y+ALV G +KG I APLG+ D K I + AVT ++V+K
Sbjct: 165 RQYYALVHGEFSENKGTIKAPLGRSKTDRKKQAVIA--------GGRDAVTHFEVVKRYV 216
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT L+++ TGR HQ+RVH A +G P+ GD YG
Sbjct: 217 -GYTLLRVTLETGRTHQIRVHMA-YIGHPVAGDPLYG 251
>gi|333978716|ref|YP_004516661.1| RluA family pseudouridine synthase [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333822197|gb|AEG14860.1| pseudouridine synthase, RluA family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 305
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + R Y AL G + +G + AP+G+ D R+ VV+ +HAVT Y ++
Sbjct: 165 RRVTRRYTALAHGNFKEDRGTVDAPIGRHPRDR---QRMAVVSR----GGRHAVTHY-MV 216
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
K YT L+L TGR HQ+RVH A LG P+VGD KYG
Sbjct: 217 KERFGQYTLLELKLETGRTHQIRVHMA-YLGHPLVGDLKYG 256
>gi|399888864|ref|ZP_10774741.1| pseudouridylate synthase [Clostridium arbusti SL206]
Length = 305
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I APLG+ V+ K I++V N + AVT Y+VI+
Sbjct: 166 MNRIYLALVEGIIKVDEGTIDAPLGRHPVERIK---ISIVKN-----GREAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 153
T ++ TGR HQ+RVH A + G P+VGD YG++ R K + H L
Sbjct: 217 RFKNNTLVECKLETGRTHQIRVHMAHI-GHPLVGDPLYGYKKQRFNLKGQMLHAKKLG 273
>gi|23012044|ref|ZP_00052228.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 238
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV G P ++G I PL + D R + D + ++T Y+V+ G
Sbjct: 102 YWALVEGGPSETEGRIDLPLARRSDDP----RSWWMKTDP--AGAPSLTLYRVLG-RTEG 154
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK--QFHPSDLS 153
+WL+L P+TGR HQLRVHCA +G PI GD YG Q R+ Q H LS
Sbjct: 155 LSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG-QADRQGPGLQLHARSLS 205
>gi|88658198|ref|YP_507572.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
gi|88599655|gb|ABD45124.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
Length = 307
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R +++ Y AL G P+ G I+ ++ N +S + VN+ + Q AVT +
Sbjct: 165 KNRRVEKKYLALTQGIPKNDIGQINHS----IIKNKRSLSLDKVNDSYL---QEAVTSFS 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+K +G L+L P+TGRKHQ+R+H + + G I+GD KYG
Sbjct: 218 VLKKLPYGIGLLELKPITGRKHQIRIHLSHI-GCSIIGDKKYG 259
>gi|403383409|ref|ZP_10925466.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC30]
Length = 306
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
+ + R Y ALV G KG I AP+G+ D ++ VV+N +HAVT +QVI
Sbjct: 164 KTVTRRYTALVHGHIPHDKGTIDAPIGR---DQKDRQKMGVVDN-----GKHAVTHFQVI 215
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++ TGR HQ+RVH +G P+VGD KYG
Sbjct: 216 GRFGTDYTLVQCRLETGRTHQIRVHM-NYIGYPLVGDPKYG 255
>gi|333997062|ref|YP_004529674.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-2]
gi|333740776|gb|AEF86266.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-2]
Length = 319
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 13/124 (10%)
Query: 18 SSGIITVE----RVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I + + + + R +++ Y ALV GTP+ ++GVI ++V D+
Sbjct: 147 TSGVIIAAWDDAALAFLADQFKARTVKKTYIALVQGTPKETQGVIET---RIVRDSRDRK 203
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R TV + + A+TRY+VI+ S ++ L L P TGR HQ+RVH LG PI+GD
Sbjct: 204 RFTVSFD----KGKAALTRYRVIR-SWGAWSLLLLQPKTGRTHQIRVHLRH-LGHPILGD 257
Query: 134 YKYG 137
YG
Sbjct: 258 PIYG 261
>gi|386716186|ref|YP_006182510.1| pseudouridine synthase [Halobacillus halophilus DSM 2266]
gi|384075743|emb|CCG47239.1| pseudouridine synthase [Halobacillus halophilus DSM 2266]
Length = 297
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+K + +R Y ALV G+P+ +G + + V K+ ++ N + AQHA+T Y+
Sbjct: 162 KKMVKERKYAALVEGSPKQPEGTVES-----YVKESKTLKMFTTKNPK--GAQHAITHYK 214
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
++ + + T L++ TGRK+Q+RVH E+ G PI GD KYG +T+
Sbjct: 215 KVQGNAN-LTLLEVQLETGRKNQIRVHMQEI-GHPIAGDKKYGARTN 259
>gi|317498467|ref|ZP_07956761.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894160|gb|EFV16348.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 305
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y A+V G + +G ++AP+G+ + D K +M +HAVT Y+V+K
Sbjct: 168 ITRKYHAIVYGNIKEEEGTVNAPIGRSLKDRKKMG--------IVMDGKHAVTHYKVLKR 219
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G+T+++ TGR HQ+RVH A + P++GD YG
Sbjct: 220 LKKGFTYIECQLETGRTHQIRVHMASI-KHPLLGDDVYG 257
>gi|144897601|emb|CAM74465.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 230
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 45/155 (29%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
Q+ YWA+VVG P G+I L K+ +G +V +D+ Q AVT Y+V+ +
Sbjct: 90 QKTYWAVVVGKPPAESGIIDKRLKKLERRHG----WRMVVDDK---GQDAVTEYRVLGGN 142
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEE 159
+W++ P TGR HQ+RVH A + G PIVGD YG T
Sbjct: 143 GR-LSWIEAKPRTGRTHQIRVHLAAI-GCPIVGDSTYGRGT------------------- 181
Query: 160 IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
DL S P LHLH + +TLP
Sbjct: 182 ----------ADLVS-------PHLHLHARSITLP 199
>gi|417090374|ref|ZP_11955908.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
gi|353533670|gb|EHC03319.1| pseudouridine synthase, RluA family [Streptococcus suis R61]
Length = 297
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L+ TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDEAYGPRKTLKGHGQF 259
>gi|167765516|ref|ZP_02437580.1| hypothetical protein CLOSS21_00010 [Clostridium sp. SS2/1]
gi|429761443|ref|ZP_19293868.1| pseudouridine synthase, RluA family [Anaerostipes hadrus DSM 3319]
gi|167712701|gb|EDS23280.1| pseudouridine synthase, RluA family [Clostridium sp. SS2/1]
gi|291558984|emb|CBL37784.1| ribosomal large subunit pseudouridine synthase D
[butyrate-producing bacterium SSC/2]
gi|429183696|gb|EKY24737.1| pseudouridine synthase, RluA family [Anaerostipes hadrus DSM 3319]
Length = 305
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y A+V G + +G ++AP+G+ + D K +M +HAVT Y+V+K
Sbjct: 168 ITRKYHAIVYGNIKEEEGTVNAPIGRSLKDRKKMG--------IVMDGKHAVTHYKVLKR 219
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G+T+++ TGR HQ+RVH A + P++GD YG
Sbjct: 220 LKKGFTYIECQLETGRTHQIRVHMASI-KHPLLGDDVYG 257
>gi|28572410|ref|NP_789190.1| pseudouridine synthase [Tropheryma whipplei TW08/27]
gi|28410541|emb|CAD66927.1| putative pseudouridine synthase [Tropheryma whipplei TW08/27]
Length = 303
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV- 95
R + + Y ALV G P S GVI+AP+G+ D DR + S + AVT+Y
Sbjct: 157 RAIHKRYKALVQGYPDPSSGVINAPIGR---DLKHRDRFCI-----DYSGRDAVTQYSTE 208
Query: 96 -IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ P G+T L ++P TGR HQ+RVH + L P+VGD KYG
Sbjct: 209 EVYP---GFTLLSVAPKTGRTHQIRVHFS-ALRHPLVGDVKYG 247
>gi|28493478|ref|NP_787639.1| pseudouridylate synthase-like protein [Tropheryma whipplei str.
Twist]
gi|28476520|gb|AAO44608.1| pseudouridylate synthase-like protein [Tropheryma whipplei str.
Twist]
Length = 303
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV- 95
R + + Y ALV G P S GVI+AP+G+ D DR + S + AVT+Y
Sbjct: 157 RAIHKRYKALVQGYPDPSSGVINAPIGR---DLKHRDRFCI-----DYSGRDAVTQYSTE 208
Query: 96 -IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ P G+T L ++P TGR HQ+RVH + L P+VGD KYG
Sbjct: 209 EVYP---GFTLLSVAPKTGRTHQIRVHFS-ALRHPLVGDVKYG 247
>gi|373454836|ref|ZP_09546698.1| RluA family pseudouridine synthase [Dialister succinatiphilus YIT
11850]
gi|371935420|gb|EHO63167.1| RluA family pseudouridine synthase [Dialister succinatiphilus YIT
11850]
Length = 308
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
QR Y ALV G + GVI PLG+ V D K D Q + + AVT Y+V +
Sbjct: 169 QRHYLALVHGQMEGNTGVIRLPLGRSVKDRMKWDV-------QPKTGKPAVTHYRV-EEF 220
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
GY++L+L TGR HQ+RVH A +G P+V D YGW+
Sbjct: 221 MPGYSFLELKLETGRTHQIRVHMA-YIGHPVVNDPLYGWK 259
>gi|441644247|ref|XP_004090574.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Nomascus leucogenys]
Length = 346
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 51/182 (28%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+ V P S GV+ P+ + V Q AVT+YQV+ S
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEV-------------------QVAVTQYQVLS-STLS 224
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
++L P+TG KHQLRVH + L PI+GD+KY W + P LS + +++
Sbjct: 225 SALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLKKL-- 277
Query: 163 EKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAP 222
GL+ + LHLH +++ LP + S+ E L LV
Sbjct: 278 ------GLEQSKARYIP----LHLHARQLILPALG--------------SRKEELNLVCK 313
Query: 223 LP 224
LP
Sbjct: 314 LP 315
>gi|157375768|ref|YP_001474368.1| lysozyme [Shewanella sediminis HAW-EB3]
gi|157318142|gb|ABV37240.1| Lysozyme [Shewanella sediminis HAW-EB3]
Length = 325
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV GT + I APL K+ + +G +RI VN + + TR+++I+
Sbjct: 181 MQKDYQALVKGTWQARDKAIKAPLLKLTLKSG--ERIVRVNQE----GKECETRFKIIQ- 233
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
G T ++ SP+TGR HQ+RVHC + G PI D KY Q +
Sbjct: 234 RYQGSTLVQASPVTGRTHQIRVHC-QYTGHPIACDEKYSEQKY 275
>gi|223934286|ref|ZP_03626210.1| pseudouridine synthase, RluA family [Streptococcus suis 89/1591]
gi|253751575|ref|YP_003024716.1| RNA pseudouridylate synthase [Streptococcus suis SC84]
gi|253753476|ref|YP_003026617.1| RNA pseudouridylate synthase [Streptococcus suis P1/7]
gi|253755698|ref|YP_003028838.1| RNA pseudouridylate synthase [Streptococcus suis BM407]
gi|330832720|ref|YP_004401545.1| RluA family pseudouridine synthase [Streptococcus suis ST3]
gi|386577763|ref|YP_006074169.1| hypothetical protein [Streptococcus suis GZ1]
gi|386579818|ref|YP_006076223.1| RluA family pseudouridine synthase [Streptococcus suis JS14]
gi|386581762|ref|YP_006078166.1| RluA family pseudouridine synthase [Streptococcus suis SS12]
gi|386583987|ref|YP_006080390.1| RluA family pseudouridine synthase [Streptococcus suis D9]
gi|386587998|ref|YP_006084399.1| RluA family pseudouridine synthase [Streptococcus suis A7]
gi|403061401|ref|YP_006649617.1| RluA family pseudouridine synthase [Streptococcus suis S735]
gi|31364860|gb|AAP49462.1| YlyB [Streptococcus suis]
gi|223897042|gb|EEF63479.1| pseudouridine synthase, RluA family [Streptococcus suis 89/1591]
gi|251815864|emb|CAZ51475.1| putative RNA pseudouridylate synthase [Streptococcus suis SC84]
gi|251818162|emb|CAZ55959.1| putative RNA pseudouridylate synthase [Streptococcus suis BM407]
gi|251819722|emb|CAR45564.1| putative RNA pseudouridylate synthase [Streptococcus suis P1/7]
gi|292558226|gb|ADE31227.1| YlyB [Streptococcus suis GZ1]
gi|319758010|gb|ADV69952.1| pseudouridine synthase, RluA family [Streptococcus suis JS14]
gi|329306943|gb|AEB81359.1| pseudouridine synthase, RluA family [Streptococcus suis ST3]
gi|353733908|gb|AER14918.1| pseudouridine synthase, RluA family [Streptococcus suis SS12]
gi|353736133|gb|AER17142.1| pseudouridine synthase, RluA family [Streptococcus suis D9]
gi|354985159|gb|AER44057.1| pseudouridine synthase, RluA family [Streptococcus suis A7]
gi|402808727|gb|AFR00219.1| RluA family pseudouridine synthase [Streptococcus suis S735]
Length = 297
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L+ TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDEAYGPRKTLKGHGQF 259
>gi|386586165|ref|YP_006082567.1| RluA family pseudouridine synthase [Streptococcus suis D12]
gi|353738311|gb|AER19319.1| pseudouridine synthase, RluA family [Streptococcus suis D12]
Length = 297
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L+ TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDEAYGPRKTLKGHGQF 259
>gi|424883104|ref|ZP_18306736.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519467|gb|EIW44199.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 341
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G++ APLG+ D + V A A+T YQVI
Sbjct: 181 LERAYQAIVWGRPRSLSGMVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVIER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 137
KP + L L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FHEKPDATAFASLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|411119450|ref|ZP_11391830.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
gi|410711313|gb|EKQ68820.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
Length = 322
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R YW LV G P+ G I AP+G+ VD K + +V ++ + AVT +QV K
Sbjct: 177 RRDYWGLVHGAPKAESGTIDAPIGRHPVDRQK---MAIVPEEK--GGRRAVTHWQV-KER 230
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
YT + TGR HQ+RVH A + G PIVGD Y
Sbjct: 231 LGNYTLMNFELETGRTHQIRVHTAYI-GFPIVGDPLY 266
>gi|110635475|ref|YP_675683.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
gi|110286459|gb|ABG64518.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
Length = 343
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR-ITVVNNDQIMSAQHAVTRYQVIK 97
L+R Y ALV G PR G++ APLG+ SDR + V A+HAVT Y V++
Sbjct: 182 LERAYVALVWGVPRRISGLVDAPLGR-----SASDRTLRAVVPQGRADARHAVTHYTVLE 236
Query: 98 PSCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
G +++ L TGR HQ+RVH A + G P+VGD YG K + P+
Sbjct: 237 RYGTGTPEEQIAALVECRLETGRTHQIRVHMAHI-GHPLVGDPAYGRAFRTKANRLPPA 294
>gi|78044742|ref|YP_360337.1| ribosomal large subunit pseudouridine synthase A [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996857|gb|ABB15756.1| ribosomal large subunit pseudouridine synthase, RluA family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 305
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YW +V G + +G+I P+G+ D K + VV+N + A T Y+V++
Sbjct: 170 REYWTIVHGYLKNKEGIIDLPIGRHPRDRQK---MAVVSN-----GKTAQTVYKVLEEFN 221
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
G+T ++ LTGR HQ+RVH + LG P++GD KYG Q +
Sbjct: 222 KGFTLIQAKLLTGRTHQIRVHFS-YLGHPVLGDPKYGHQNN 261
>gi|289522930|ref|ZP_06439784.1| ribosomal large subunit pseudouridine synthase D [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503954|gb|EFD25118.1| ribosomal large subunit pseudouridine synthase D [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 299
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 14/133 (10%)
Query: 16 AVSSGIITVERVMY---KDNDNEK-RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
A +SG++ + R ++ K D K R +++ Y ALV G+P KG I++P+G+ + K
Sbjct: 132 AGTSGLMVIARNLFSKQKLTDAFKARSVKKEYLALVYGSPNKEKGTIASPIGRHPKNRLK 191
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
+ VV+ + AVT Y+V+ S +++L+ + TGR HQ+RVH + +G PIV
Sbjct: 192 ---MAVVSG-----GREAVTEYEVLW-SNDKFSFLRCTIHTGRTHQIRVHLKD-MGCPIV 241
Query: 132 GDYKYGWQTHRKW 144
GD YG +W
Sbjct: 242 GDRLYGCNLKAEW 254
>gi|344996069|ref|YP_004798412.1| RluA family pseudouridine synthase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964288|gb|AEM73435.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 293
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y ++ EKR +++ Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKDTSGIVVFAKNSYFHSIVSHEFEKRQVEKTYIAIVHGRLTKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
+ D+G I A T Y+VI S ++ LKL P+TGR HQLRVH
Sbjct: 182 KRS--DDGIKREIH-------QDGSFASTYYEVID-SFENFSLLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYG 137
+ + G PIVGD YG
Sbjct: 232 SSI-GYPIVGDCIYG 245
>gi|312793590|ref|YP_004026513.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180730|gb|ADQ40900.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 293
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y ++ EKR +++ Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKDTSGIVVFAKNSYFHSIVSHEFEKRQVEKTYIAIVHGRLAKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
+ D+G I A T Y+VI S ++ LKL P+TGR HQLRVH
Sbjct: 182 KRS--DDGIKREIH-------QDGSFASTYYEVID-SFENFSLLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYG 137
+ + G PIVGD YG
Sbjct: 232 SSI-GYPIVGDCIYG 245
>gi|163814069|ref|ZP_02205461.1| hypothetical protein COPEUT_00222 [Coprococcus eutactus ATCC 27759]
gi|158450518|gb|EDP27513.1| pseudouridine synthase, RluA family [Coprococcus eutactus ATCC
27759]
Length = 304
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 32 NDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQ 82
NDN R L R Y+A+V G +G + AP+G+ D K +NN
Sbjct: 151 NDNAHRALSEQLHEHSITRKYYAIVYGNISSDEGTVDAPIGRSPKDRKK----MAINN-- 204
Query: 83 IMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ + AVT Y+V++ YT+++ TGR HQ+RVH A + G PI+GD YG
Sbjct: 205 -RNGRRAVTHYRVLERFGGRYTYIECQLETGRTHQIRVHMASI-GHPILGDEVYG 257
>gi|282878833|ref|ZP_06287600.1| pseudouridine synthase, RluA family [Prevotella buccalis ATCC
35310]
gi|281299041|gb|EFA91443.1| pseudouridine synthase, RluA family [Prevotella buccalis ATCC
35310]
Length = 516
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 1 MLSSITASHVYEKCIAVSSGIITVERVM----YKDNDNEKRILQRWYWALVVGTPRCSKG 56
M+ H + +SG++ V + M + + +Q+ Y A++ G + G
Sbjct: 344 MMPQDMPLHAVHRLDMATSGLLIVAKNMKVYHHLQAQFKAHTIQKEYIAVLDGKVTQTDG 403
Query: 57 VISAPLGKVVVDNGKS--DRITVVNNDQIMSAQHAVTRYQVIKPSCH-GYTWLKLSPLTG 113
I+ PL ++D + DR+ + A+T Y+V+ S H G T L LSP+TG
Sbjct: 404 SINLPLRPDLLDRPRQMVDRV---------HGKSAITFYRVL--SVHQGKTMLALSPMTG 452
Query: 114 RKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW 144
R HQLR+HCA E L PI+GD YG Q R +
Sbjct: 453 RTHQLRMHCAHQEGLNCPILGDELYGHQADRLY 485
>gi|116253506|ref|YP_769344.1| ribosomal large subunit pseudouridine synthase D [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258154|emb|CAK09255.1| putative ribosomal large subunit pseudouridine synthase D
[Rhizobium leguminosarum bv. viciae 3841]
Length = 341
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G + APLG+ D + V A A+T YQVI
Sbjct: 181 LERAYQAIVWGRPRTLSGTVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVIER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 137
KP + L L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FHEKPDATAFASLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|424896721|ref|ZP_18320295.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180948|gb|EJC80987.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 341
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G + APLG+ D G R V D A A+T YQVI
Sbjct: 181 LERAYQAVVWGRPRSLTGTVDAPLGR---DTGDRTRRAVKRPDS-HDADEAITHYQVIER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
KP L L TGR HQ+RVH A + G P++GD YG K + P D+
Sbjct: 237 FQEKPDATALASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYGAGFKTKANRL-PEDI 294
Query: 153 SKDSN 157
K N
Sbjct: 295 RKVVN 299
>gi|424872040|ref|ZP_18295702.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167741|gb|EJC67788.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 341
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G + APLG+ D + V A A+T YQVI
Sbjct: 181 LERAYQAIVWGRPRTLSGTVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVIER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 137
KP + L L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FHEKPDATAFASLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|320160390|ref|YP_004173614.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
gi|319994243|dbj|BAJ63014.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
Length = 310
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY--Q 94
R +Q+ Y ALV G P G I AP+G+ D R+ VV ++ + AV+ Y +
Sbjct: 166 RKVQKTYLALVDGRPPTPTGRIEAPIGR---DPKNRQRMAVVPPEK---GREAVSEYFTR 219
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ PS +T L++ PLTGR HQ+RVH A +G P+ GD YG
Sbjct: 220 EVFPS---HTLLEVHPLTGRTHQIRVHLA-FIGCPVAGDLIYG 258
>gi|58039270|ref|YP_191234.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H]
gi|58001684|gb|AAW60578.1| Ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H]
Length = 265
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 16 AVSSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
A +SG + V R ++ ++R + YWA+VVG G I APL + +
Sbjct: 96 ADTSGCLLVARRKTALIEAQKAFQERQAHKLYWAVVVGDLPQDSGEIDAPL---LRQSDA 152
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
S VV+ A TR++V+ S G W++L LTGR HQ R+HCAE LGTPI+
Sbjct: 153 SGWRMVVD----AKGDEARTRWRVLGRS-KGLCWVELELLTGRTHQARIHCAE-LGTPIL 206
Query: 132 GDYKYG 137
GD YG
Sbjct: 207 GDPVYG 212
>gi|188582089|ref|YP_001925534.1| pseudouridine synthase [Methylobacterium populi BJ001]
gi|179345587|gb|ACB80999.1| pseudouridine synthase [Methylobacterium populi BJ001]
Length = 249
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 28 MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQ 87
++ D +K YWALV G P ++G I PL K D R + D +
Sbjct: 92 LFADGKADKT-----YWALVEGGPDEAEGRIDLPLAKRSDDP----RSWWMKTDP--AGA 140
Query: 88 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++T Y+V+ G +WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 141 PSLTLYRVLG-RADGLSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|320168809|gb|EFW45708.1| pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 748
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 50/216 (23%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT----VVNNDQIMS----- 85
+K+ + + Y A+V G P G+I+ PL + + +T + +D + +
Sbjct: 439 QKQRIGKTYTAIVAGAPPFDSGIINCPLEVISATTARKVGVTPGTVLCRHDLVYANETSY 498
Query: 86 ------AQHAVTRYQVIKPSCHGYTWL-KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 138
A A+T + V+ S G L + P++GRKHQLRVH ++ LG PI+GD +YG
Sbjct: 499 LRTRRDALSAITHFSVVGRSSRGPAALIEFVPMSGRKHQLRVHSSKYLGHPILGDNRYG- 557
Query: 139 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 198
P E LH L + +L LH + + +P++ Q
Sbjct: 558 -------------------NGCPVE--LHEPLGIAGWDAKNDVVKLQLHARSIVVPSLDQ 596
Query: 199 AIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
+ L ++APLP+HM+ D L
Sbjct: 597 QRNN------------KPLVVLAPLPAHMKEVMDKL 620
>gi|294141325|ref|YP_003557303.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
gi|293327794|dbj|BAJ02525.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
Length = 319
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV GT + VI APL K+ + +G +RI VN + + TR+++++
Sbjct: 175 MQKDYQALVKGTWQARDKVIKAPLLKLTLKSG--ERIVRVNQE----GKECETRFKILQ- 227
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 228 RYQGATLVQASPVTGRTHQIRVHC-QYAGHPIACDDKYSEQ 267
>gi|114562667|ref|YP_750180.1| RluA family pseudouridine synthase [Shewanella frigidimarina NCIMB
400]
gi|114333960|gb|ABI71342.1| ribosomal large subunit pseudouridine synthase C [Shewanella
frigidimarina NCIMB 400]
Length = 318
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 8/103 (7%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
+ +Q+ Y ALV G + S V+ APL K+ + +G +RI VN + + + TRY+++
Sbjct: 172 KTMQKDYLALVRGEWQASDKVVKAPLLKITLKSG--ERIVRVNKE----GKESETRYKIM 225
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ G T +K SP+TGR HQ+RVHC + G I D KY Q
Sbjct: 226 Q-RYQGCTLVKASPVTGRTHQIRVHC-QYAGHAIACDDKYSEQ 266
>gi|341820394|emb|CCC56664.1| pseudouridylate synthase [Weissella thailandensis fsh4-2]
Length = 304
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 18 SSGIITVER------VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
+SG++ V + + D N+K + R Y+ALV G +KG I APLG+ + K
Sbjct: 138 TSGLLMVAKNDQAHEALSSDLKNKKNL--RQYYALVHGEFSENKGTIKAPLGRSKTNRKK 195
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIV 131
I + AVT ++V+K GYT L+++ TGR HQ+RVH A +G P+
Sbjct: 196 QAVIA--------GGRDAVTHFEVVKRYV-GYTLLRVTLETGRTHQIRVHMA-YIGHPVA 245
Query: 132 GDYKYG 137
GD YG
Sbjct: 246 GDPLYG 251
>gi|182680419|ref|YP_001834565.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636302|gb|ACB97076.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 234
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YW++V+G P +G+I PLG+ + G ++ + + AQ TR+ V+ S
Sbjct: 92 YWSVVLGGPTEDEGLIDLPLGRRDAERGWWMKV----DPEGAPAQ---TRWTVLARSAD- 143
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 148
+ L L PLTGR HQLRVHCA G PI+GD YG H+ + H
Sbjct: 144 HCLLALKPLTGRTHQLRVHCA-AQGFPILGDPVYGPADHKGGETLH 188
>gi|163751081|ref|ZP_02158312.1| RluC [Shewanella benthica KT99]
gi|161329242|gb|EDQ00241.1| RluC [Shewanella benthica KT99]
Length = 319
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV GT + VI APL K+ + +G +RI VN + + TR+++++
Sbjct: 175 MQKDYQALVKGTWQARDKVIKAPLLKLTLKSG--ERIVRVNQE----GKECETRFKILQ- 227
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 228 RYQGATLVQASPVTGRTHQIRVHC-QYAGHPIACDDKYSEQ 267
>gi|89094316|ref|ZP_01167257.1| ribosomal large subunit pseudouridine synthase C [Neptuniibacter
caesariensis]
gi|89081375|gb|EAR60606.1| ribosomal large subunit pseudouridine synthase C [Oceanospirillum
sp. MED92]
Length = 321
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+K + + Y ALVVG+ K I APL K + +G +R+ V D + +T Y+
Sbjct: 171 KKSTITKIYHALVVGSWSERKRRIDAPLKKNELKSG--ERVVKVTAD----GKECLTEYK 224
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V++ T ++ P+TGR HQ+RVHC + G PIVGD KYG
Sbjct: 225 VLQRFGREATLVEARPITGRTHQIRVHC-QFAGHPIVGDEKYG 266
>gi|417937499|ref|ZP_12580799.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
gi|343391763|gb|EGV04336.1| pseudouridine synthase, RluA family [Streptococcus infantis SK970]
Length = 297
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|340028922|ref|ZP_08664985.1| ribosomal large subunit pseudouridine synthase C [Paracoccus sp.
TRP]
Length = 350
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 86/204 (42%), Gaps = 45/204 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKV--VVDNGKSDRITVVNNDQIMS---AQHAVT 91
R+ ++ YWA V G P G I L K G+ +++ V+ + S A+ A T
Sbjct: 172 RLTRKIYWAAVAGVPSPRMGSIKYGLVKAPGRGRGGEGEKMMTVHPSAVASTEGAKRAHT 231
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
+ V+ W+ + P+TGR HQLR H A + G PIVGD KYG
Sbjct: 232 DFAVLDALGSRTAWVAMVPVTGRTHQLRAHMAGI-GHPIVGDGKYG-------------- 276
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDV 211
S +E P + +G L G I K LHLH + + I K
Sbjct: 277 ---GSGQENPGDG---WGAQL-GGEISRK---LHLHARMIRF---EHPITK--------- 314
Query: 212 SKLETLKLVAPLPSHMQRSWDVLN 235
+ + + APLP HM R+W L
Sbjct: 315 ---KLITVTAPLPDHMVRTWKTLG 335
>gi|148552990|ref|YP_001260572.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
gi|148498180|gb|ABQ66434.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
Length = 321
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y A+V GTPR + G + APL + D K I +V + + + AVT Y VI+P
Sbjct: 173 IDRRYRAIVAGTPRLAAGTVDAPLARSTADRKK---IAIVADGR---GKRAVTHYSVIEP 226
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++ TGR HQ+RVH A LG P++GD YG
Sbjct: 227 -LRRAALVECRLETGRTHQVRVHMAS-LGHPLLGDPVYG 263
>gi|170759197|ref|YP_001786899.1| RluA family pseudouridine synthase [Clostridium botulinum A3 str.
Loch Maree]
gi|169406186|gb|ACA54597.1| pseudouridine synthase, RluA family [Clostridium botulinum A3 str.
Loch Maree]
Length = 305
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + +HAVT Y+VIK
Sbjct: 166 ISRVYMALVEGIIKNEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIK- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECRLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|322387558|ref|ZP_08061167.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|419843101|ref|ZP_14366425.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
gi|321141425|gb|EFX36921.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
infantis ATCC 700779]
gi|385703203|gb|EIG40329.1| pseudouridine synthase, RluA family [Streptococcus infantis ATCC
700779]
Length = 297
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|417936057|ref|ZP_12579374.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
gi|343402966|gb|EGV15471.1| pseudouridine synthase, RluA family [Streptococcus infantis X]
Length = 297
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH A +G P+ GD YG
Sbjct: 211 RFGDYTLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|163852141|ref|YP_001640184.1| pseudouridine synthase [Methylobacterium extorquens PA1]
gi|163663746|gb|ABY31113.1| pseudouridine synthase [Methylobacterium extorquens PA1]
Length = 239
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWALV G P +G I PL K D R + D + ++T Y+V+ G
Sbjct: 102 YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTFYRVLG-RTEG 154
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 155 LCWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|58617049|ref|YP_196248.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
gi|58416661|emb|CAI27774.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
Length = 305
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS-AQHAV 90
N+ + R +++ Y AL G P G I P+ K K IT+ N MS Q AV
Sbjct: 161 NEFKDRKVKKKYLALTCGIPDDDCGQIDYPIVK------KKHGITLEKN---MSFVQQAV 211
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW---QTHRKWKQF 147
T + ++ + L L P+TGRKHQ+R+H + + G PIVGD KYG + Q
Sbjct: 212 TMFSTLRKLPNDIGLLDLQPITGRKHQIRIHLSHI-GCPIVGDVKYGKICDNISNNYLQL 270
Query: 148 HPSDLS 153
H LS
Sbjct: 271 HAYFLS 276
>gi|167523214|ref|XP_001745944.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775745|gb|EDQ89368.1| predicted protein [Monosiga brevicollis MX1]
Length = 512
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
Q+ Y+A +G P KG I L NG T N + + S TRYQV+
Sbjct: 199 QKIYYATTLGVPFPRKGEIKGYL--TPHKNGVKLDATPQNKNSVFSH----TRYQVVDAL 252
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++L P+TGR+HQLR H A+ L TPI+GD +YG
Sbjct: 253 DREAALVRLEPVTGRRHQLRAHLAQGLRTPILGDTQYG 290
>gi|392376177|ref|YP_003208010.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
gi|258593870|emb|CBE70211.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
Length = 314
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +Q+ Y ALV G + P G++ D G+ +R + + AVT Y+VI
Sbjct: 166 RRVQKTYIALV-------HGEVKQPQGQIAADIGRHERDRKRMAVRTRKGREAVTNYRVI 218
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
K G T L+L P TGR HQ+RVH + + G P+VGD YG + +K +
Sbjct: 219 K-RLGGLTLLELQPQTGRTHQIRVHLSAI-GHPVVGDKVYGGRREKKCR 265
>gi|56551401|ref|YP_162240.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
gi|59802982|sp|O66114.2|Y505_ZYMMO RecName: Full=Uncharacterized RNA pseudouridine synthase ZMO0505;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|56542975|gb|AAV89129.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
Length = 219
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA++ G P ++G+I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 VKKCYWAILEGVPEKNEGIIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEILAK 139
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ G + + P TGR HQLRVH A LG PIVGD YG
Sbjct: 140 N-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYG 177
>gi|374849516|dbj|BAL52529.1| ribosomal large subunit pseudouridine synthase D [uncultured
Chloroflexi bacterium]
Length = 307
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 18 SSGIITVERV----MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V R Y + R +++ Y ALV G P G I AP+G+ D
Sbjct: 142 TSGLMIVARNERAHRYLQDQFRLRRVEKTYLALVDGHPPTPSGRIEAPIGR---DPLHRK 198
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ +++ + + A++ Y++++ + + L++ PLTGR HQ+R+H A LG P+VGD
Sbjct: 199 RMAILHPGK---GREAISEYRLLE-TFPAHALLEVHPLTGRTHQIRLHLA-FLGCPVVGD 253
Query: 134 YKYGWQ 139
YG +
Sbjct: 254 TVYGRK 259
>gi|254785221|ref|YP_003072649.1| ribosomal large subunit pseudouridine synthase D [Teredinibacter
turnerae T7901]
gi|237685566|gb|ACR12830.1| ribosomal large subunit pseudouridine synthase D [Teredinibacter
turnerae T7901]
Length = 333
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 15/136 (11%)
Query: 18 SSGIITVERVMYKDNDN----EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V + N+ + R ++R Y AL +G R S G + AP+G+ +
Sbjct: 158 TSGLMVVAKTTAAQNNLVAQLQARTVKREYEALAIGEVRSS-GFVDAPIGRHPTNR---T 213
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R+ VV+ S + AVT Y + G+T L+L TGR HQ+RVH A LG P+VGD
Sbjct: 214 RMAVVS-----SGKPAVTHYTALA-RFDGFTHLRLQLETGRTHQIRVHMAH-LGYPLVGD 266
Query: 134 YKYGWQTHRKWKQFHP 149
YG + K + +P
Sbjct: 267 PVYGRRLPAKLLRENP 282
>gi|117925074|ref|YP_865691.1| ribosomal large subunit pseudouridine synthase C [Magnetococcus
marinus MC-1]
gi|117608830|gb|ABK44285.1| ribosomal large subunit pseudouridine synthase C [Magnetococcus
marinus MC-1]
Length = 328
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
Y LV G P +GVI+ PL K V G +R+ VV Q AVT Y+V++ S
Sbjct: 184 YLTLVQGVPAARQGVINQPLSKGNVRGG--ERMVVVEQ----GGQRAVTHYRVLR-SYGV 236
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+ L++ TGR HQ+RVH + LG P+ GD KYG + KW
Sbjct: 237 ASLLEVQLETGRTHQIRVHM-QWLGHPVAGDGKYGDKAFNKW 277
>gi|260752988|ref|YP_003225881.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411950|ref|YP_005621315.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552351|gb|ACV75297.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335932324|gb|AEH62864.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 219
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA++ G P ++G+I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 VKKCYWAILEGVPEKNEGIIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEILAK 139
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ G + + P TGR HQLRVH A LG PIVGD YG
Sbjct: 140 N-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYG 177
>gi|315121810|ref|YP_004062299.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495212|gb|ADR51811.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 340
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRI-TVVNNDQIMSAQHAVTRYQVI- 96
L+R Y+A+V G P G I+APLG+ KS+R+ V + + AVTRYQ +
Sbjct: 181 LKRSYYAMVWGVPSPDSGTINAPLGRC-----KSNRLRRAVKRIEDKTGDRAVTRYQTVE 235
Query: 97 ---KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
K S + L+ TGR HQ+RVH A G PI+GD YG
Sbjct: 236 IYNKNSNFAASLLRCDLETGRTHQIRVHMAHK-GYPIIGDPLYG 278
>gi|170726386|ref|YP_001760412.1| RluA family pseudouridine synthase [Shewanella woodyi ATCC 51908]
gi|169811733|gb|ACA86317.1| pseudouridine synthase, RluA family [Shewanella woodyi ATCC 51908]
Length = 319
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV GT + I APL K+ + +G +RI VN + + TR+++++
Sbjct: 175 MQKDYQALVKGTWQARDKAIKAPLLKLTLKSG--ERIVRVNQE----GKECETRFKILQ- 227
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
G T ++ SP+TGR HQ+RVHC + G PI D KY Q +
Sbjct: 228 RYQGSTLVQASPVTGRTHQIRVHC-QYTGHPIACDEKYSEQKY 269
>gi|146318440|ref|YP_001198152.1| YlyB [Streptococcus suis 05ZYH33]
gi|145689246|gb|ABP89752.1| YlyB [Streptococcus suis 05ZYH33]
Length = 309
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKEAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++L+ TGR HQ+RVH A +G P+ GD YG
Sbjct: 213 GDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDEAYG 248
>gi|53712433|ref|YP_098425.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis YCH46]
gi|52215298|dbj|BAD47891.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis YCH46]
Length = 539
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y AL+ G +GVI P+ +D + +VN + + A+TRYQ
Sbjct: 411 ENRSIKKRYIALLDGILPEEEGVIDLPICPDYLDRPRQ----MVNEE---LGKTAITRYQ 463
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
V+ +G T + PLTGR HQLRVH A LG PIVGD YG + R +
Sbjct: 464 VMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKAERLY 514
>gi|118361718|ref|XP_001014087.1| RNA pseudouridylate synthase family protein [Tetrahymena
thermophila]
gi|89295854|gb|EAR93842.1| RNA pseudouridylate synthase family protein [Tetrahymena
thermophila SB210]
Length = 881
Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 31/153 (20%)
Query: 17 VSSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK 71
V+SG++ V + +Y + N+K + ++Y ALV +P+ K +I+AP ++ +
Sbjct: 142 VTSGVLMVPKNQQIAKIYGNLFNDKSNINKYYIALVRNSPKNFKAMINAP-----IEYSQ 196
Query: 72 SDRITVVNNDQIMSAQHAVTRYQVIKP--------------SCHGY-------TWLKLSP 110
S + +V+N +++ A T YQV+ S H Y + LK+
Sbjct: 197 SKQRAIVSNIIDENSKSAHTHYQVLAQFKMEDKNLAAKIINSEHDYIKDWGDFSLLKIRI 256
Query: 111 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
GRKHQ+RVH +E+ TPIVGD +Y + H++
Sbjct: 257 QEGRKHQIRVHLSEISKTPIVGDARYFDKNHQE 289
>gi|23098304|ref|NP_691770.1| hypothetical protein OB0849 [Oceanobacillus iheyensis HTE831]
gi|22776530|dbj|BAC12805.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 303
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Query: 18 SSGIITV---ERVMYKDNDNEKRIL-QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ ERV K +N K I+ +R Y ALV G KG I + L + S
Sbjct: 146 TSGVMMFAKNERVKRKLQNNWKDIVKERTYVALVEGQVAKEKGYIVSWLKESATRKMYSS 205
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
R V ND Q A TRY+V++ + Y+ L+L TGRK+Q+RVH E LG P+VGD
Sbjct: 206 R---VKND----GQRAATRYRVLQTNNR-YSLLELQLETGRKNQIRVHMEE-LGHPVVGD 256
Query: 134 YKYG 137
+YG
Sbjct: 257 KRYG 260
>gi|373499042|ref|ZP_09589537.1| RluA family pseudouridine synthase [Fusobacterium sp. 12_1B]
gi|371959740|gb|EHO77417.1| RluA family pseudouridine synthase [Fusobacterium sp. 12_1B]
Length = 288
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 3 SSITASHVYEKCIAVSSGIITVERVMYKDND-NEKRILQRWYWALVVGTPRCSKGVISAP 61
I Y + +SG+I V + + + EK I+ ++Y A+V GT + +I P
Sbjct: 117 GKIMVPRFYNRLDMNTSGLIIVAKNSFAQSFLQEKGIVNKFYKAIVKGTVEKDEFLIDRP 176
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 121
+GK+ D+ + I+V + Q A T+ +VIK T ++ LTGR HQ+R H
Sbjct: 177 IGKIG-DDLRRREISVED-----GGQEAQTKIKVIK-RFKDLTLIEAELLTGRTHQIRAH 229
Query: 122 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQ 181
A + G P++GD YG + R +Q S ++ S+ E + KT+ + + IL ++
Sbjct: 230 MA-LEGYPLLGDELYGGEDKRAKRQMLHSYKTQFSDVETGQLKTVEIDIPDDMKKILSEE 288
>gi|170751707|ref|YP_001757967.1| pseudouridine synthase [Methylobacterium radiotolerans JCM 2831]
gi|170658229|gb|ACB27284.1| pseudouridine synthase [Methylobacterium radiotolerans JCM 2831]
Length = 224
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA+V G P +G I PL + +SD + ++T ++V+
Sbjct: 89 VEKTYWAIVAGGPAGEEGSIDLPLAR------RSDDPRSWWMKADPAGDPSLTHWRVLG- 141
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
G TWL+L P+TGR HQLRVHCA G PI+GD YG H LS
Sbjct: 142 RAGGRTWLELKPVTGRTHQLRVHCAAS-GWPILGDAVYGGAPRGSALHLHARALS 195
>gi|59713667|ref|YP_206442.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
ES114]
gi|59481915|gb|AAW87554.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
ES114]
Length = 576
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y AL+ G G I+ PL + D + +VN+ S + A T YQV
Sbjct: 449 ERTVEKRYTALLEGNIETDNGTINLPLTGDMEDRPRQ----MVNHK---SGRKAETHYQV 501
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
I T + L P TGR HQLRVHCA G TPIVGD YG++ R
Sbjct: 502 IAQEG-KRTKVHLYPHTGRTHQLRVHCAHQAGLNTPIVGDDLYGFKADR 549
>gi|157825473|ref|YP_001493193.1| ribosomal large subunit pseudouridine synthase C [Rickettsia akari
str. Hartford]
gi|157799431|gb|ABV74685.1| ribosomal large subunit pseudouridine synthase C [Rickettsia akari
str. Hartford]
Length = 303
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y A+ G P + G + + + K G + +IT ++++ +A+ A+T Y+
Sbjct: 164 KEKLIVKTYCAITYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NAKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
++K + ++ +P+TGR HQLR+H +++LG PIVGD KYG + + K+ H ++
Sbjct: 218 LLKSLDNNLFLIEFTPVTGRMHQLRLH-SKLLGCPIVGDNKYGNKEIMPYSKYMFLHSNN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 MCLSEKIFGQEIKLEAKLPF 296
>gi|339498527|ref|ZP_08659503.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 312
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
QR Y ALV G + G ISAPL + VD K +T + A+T +QV+K
Sbjct: 165 QRIYIALVRGEFQEDTGTISAPLARHKVDR-KKQAVT-------EGGREAITHFQVLKRF 216
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT LK+ TGR HQ+RVH + G PIVGD YG
Sbjct: 217 V-GYTLLKVRLETGRTHQIRVHMTYI-GHPIVGDPVYG 252
>gi|338707704|ref|YP_004661905.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336294508|gb|AEI37615.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 230
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 38 ILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS---AQHAVTRYQ 94
++++ YWA++ G P G+I PL K+ +V QI++ + AVTR+
Sbjct: 85 LVKKCYWAILSGIPDKESGIIDLPLTKIS---------SVQKGWQIIADPKGKRAVTRWH 135
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
++ Y+ ++ P TGR HQLRVH A LG PI+GD YG +K
Sbjct: 136 LLA-RIGAYSLVEFQPETGRTHQLRVHAATGLGLPILGDPFYGTDKSQK 183
>gi|329889164|ref|ZP_08267507.1| RNA pseudouridylate synthase family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844465|gb|EGF94029.1| RNA pseudouridylate synthase family protein [Brevundimonas diminuta
ATCC 11568]
Length = 241
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R Q+ Y ALV P G I++ L + + G+ + VV+ D AQ A + Y+ +
Sbjct: 97 RKFQKTYLALVAAAPEPKSGRITSALRREEI--GRESYMRVVDFDAP-GAQGAASGYRTL 153
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
S G ++LSP TGR HQLRVH A + G P+VGD +YG
Sbjct: 154 ASSEDGAV-VELSPETGRMHQLRVHMASI-GRPLVGDVRYG 192
>gi|110678758|ref|YP_681765.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
gi|109454874|gb|ABG31079.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
Length = 346
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 49/200 (24%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVV-----NNDQIMSAQHAVTRYQVIK 97
YWALV G P G I L K + ++ D+ A+ A T Y +
Sbjct: 175 YWALVAGVPTPYLGEIRYALVKAQGRGRGGEGEKMIALPPREVDETPGAKRAHTLYATLY 234
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSN 157
+W+ + P+TGR HQLR H AE+ G PI+GD KYG S
Sbjct: 235 RVGSRASWVAMEPITGRTHQLRAHMAEI-GHPIIGDGKYG-----------------GSG 276
Query: 158 EEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTL--PNVSQAIQKVQLSSGCDVSKLE 215
+E + G + G ++ K +LHLH + M P + +
Sbjct: 277 QE-----NMGDGWGAQLGGVISK--KLHLHARMMRFEHPETRKPV--------------- 314
Query: 216 TLKLVAPLPSHMQRSWDVLN 235
+ A +P HM++SW+
Sbjct: 315 --TITADMPDHMKQSWETFG 332
>gi|224024462|ref|ZP_03642828.1| hypothetical protein BACCOPRO_01187 [Bacteroides coprophilus DSM
18228]
gi|224017684|gb|EEF75696.1| hypothetical protein BACCOPRO_01187 [Bacteroides coprophilus DSM
18228]
Length = 547
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y AL+ G PR +G I PL SDR N ++ + AVTR++
Sbjct: 419 ETRQIRKRYTALLQGNPRQDEGTIDLPLCPDF-----SDRPRQQVNWEL--GKKAVTRFR 471
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
V + S G T + PLTGR HQLRVH A E L +PI+GD YG Q R + H ++L
Sbjct: 472 VEERSG-GTTRVSFWPLTGRTHQLRVHAAHPEGLDSPILGDPLYGNQADRLY--LHAAEL 528
Query: 153 S 153
Sbjct: 529 E 529
>gi|407004108|gb|EKE20558.1| hypothetical protein ACD_7C00527G0001 [uncultured bacterium]
Length = 322
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SGI+ + + + +K EK I ++ Y A+ G P G I PL +
Sbjct: 150 TSGILIIAKNIKSFLEFKTMFKEKTIAKK-YLAISYGIPLERTGAIDKPLARTT----NY 204
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+ T+ + A+T Y+VIK ++ +++SP TGR HQ+RVH + + G PIVG
Sbjct: 205 RKQTIAGKRTKTKIREALTNYEVIKDLGENFSLIEVSPQTGRTHQIRVHLSAI-GHPIVG 263
Query: 133 DYKYGWQTHRKWK 145
D Y + + K++
Sbjct: 264 DNLYRKKNYEKFE 276
>gi|402496954|ref|YP_006556214.1| pseudouridylate synthase 23S RNA-specific [Wolbachia endosymbiont
of Onchocerca ochengi]
gi|398650227|emb|CCF78397.1| pseudouridylate synthase 23S RNA-specific [Wolbachia endosymbiont
of Onchocerca ochengi]
Length = 325
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 55/113 (48%), Gaps = 24/113 (21%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPL--------GKVVVDNGKSDRITVVNNDQIMSA 86
E+R+ ++ Y AL G P +KGVI PL KVVVD S
Sbjct: 170 EQRV-KKTYLALTSGIPSKNKGVIDYPLIKKCISGQEKVVVDK--------------YSP 214
Query: 87 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
Q A T + VI ++KL P+TGR HQLR H A + PI+GD KYG +
Sbjct: 215 QSATTHFSVIARLEQNVAYVKLQPITGRTHQLRAHLAYI-NCPILGDGKYGGK 266
>gi|241206033|ref|YP_002977129.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859923|gb|ACS57590.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 341
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G++ APLG+ D + V A A+T YQV+
Sbjct: 181 LERAYQAVVWGRPRSLSGMVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYQVVER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYG 137
KP + L L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FHEKPDATAFASLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|157964329|ref|YP_001499153.1| ribosomal large subunit pseudouridine synthase [Rickettsia
massiliae MTU5]
gi|157844105|gb|ABV84606.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
massiliae MTU5]
Length = 306
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ +++ A+T Y+
Sbjct: 167 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITNIDSE---NSKLAITYYK 220
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A +LG PI+GD KYG + + K+ H ++
Sbjct: 221 VLKSLDNNLFLIEFTPVTGRMHQLRLH-ARLLGCPILGDDKYGNKEIMPYSKYMFLHANN 279
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 280 ICLSEKIFGKEIKLEAKLPF 299
>gi|410098379|ref|ZP_11293357.1| RluA family pseudouridine synthase [Parabacteroides goldsteinii
CL02T12C30]
gi|409222253|gb|EKN15198.1| RluA family pseudouridine synthase [Parabacteroides goldsteinii
CL02T12C30]
Length = 303
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 38 ILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
I QR Y A+V G P +I + L V+N K D + A+TRY V+
Sbjct: 172 ITQRSYVAVVEGRPEKDHDLIVSNL----VENAKMQVYVTAEGD----GKEAITRYHVLH 223
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
+ H Y+ L+L TGRK+Q+RV E +G PI GDYKYG T
Sbjct: 224 SNGH-YSLLELDLETGRKNQIRVQM-ESIGHPIAGDYKYGADT 264
>gi|83858519|ref|ZP_00952041.1| ribosomal large subunit pseudouridine synthase C [Oceanicaulis sp.
HTCC2633]
gi|83853342|gb|EAP91194.1| ribosomal large subunit pseudouridine synthase C [Oceanicaulis sp.
HTCC2633]
Length = 325
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 81/202 (40%), Gaps = 56/202 (27%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR-ITVVNNDQIMSAQHAVTRY 93
+ R +++ YWA+ +G P G I + K + + DR + V AQHA+TRY
Sbjct: 164 QTRDVKKTYWAICLGLPAPRAGEIKGFMKKSM----EGDRELMVGARHGEEGAQHALTRY 219
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
V + +W+ L P TGR HQLRVH + +G I GD KY P LS
Sbjct: 220 AVADNAGARASWVVLRPETGRTHQLRVHM-QAMGHSIYGDGKY------TCDYPDPEGLS 272
Query: 154 KDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSK 213
+ +LHLH +++ +P Q
Sbjct: 273 R----------------------------KLHLHARKIEIPREGQ--------------- 289
Query: 214 LETLKLVAPLPSHMQRSWDVLN 235
+ L + A LP HM S+D L
Sbjct: 290 -KPLVIEADLPKHMADSFDALG 310
>gi|58037279|ref|NP_082316.1| RNA pseudouridylate synthase domain-containing protein 4 [Mus
musculus]
gi|81904256|sp|Q9CWX4.1|RUSD4_MOUSE RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|12845681|dbj|BAB26852.1| unnamed protein product [Mus musculus]
gi|38511726|gb|AAH61256.1| RNA pseudouridylate synthase domain containing 4 [Mus musculus]
gi|74140035|dbj|BAE33761.1| unnamed protein product [Mus musculus]
gi|148693444|gb|EDL25391.1| RNA pseudouridylate synthase domain containing 4 [Mus musculus]
Length = 377
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 54/211 (25%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R +++ YWA+ V P S GV+ P+ + V DNGK ++
Sbjct: 179 RQVEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTLSPSYRLDNGKMVKVRASR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ + AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 DAHV-----AVTQYQVLS-SASSSALVELQPVTGIKHQLRVHLSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS + +++ GL + LHLH +++ LP +
Sbjct: 291 ---DWTRLAPQKLSAGTLKKL--------GLQQSKARYIP----LHLHARQLILPALG-- 333
Query: 200 IQKVQLSSGCDVSKLETLKLVAPLPSHMQRS 230
S+ E L L LP RS
Sbjct: 334 ------------SRTEELLLTCKLPHFFARS 352
>gi|315123230|ref|YP_004065236.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas sp.
SM9913]
gi|315016990|gb|ADT70327.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas sp.
SM9913]
Length = 563
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G + GVI+ PL V+D R V + + ++T + V
Sbjct: 436 ERTIEKRYVALVAGNITENSGVINLPL---VLDFDDKPRQMVC----YKTGKPSLTTWHV 488
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + T L+L P TGR HQLRVHCA LG TPIVGD YG + R
Sbjct: 489 LERK-NNTTRLQLYPKTGRTHQLRVHCAHQLGLNTPIVGDTHYGEEAER 536
>gi|296533864|ref|ZP_06896396.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296265811|gb|EFH11904.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 236
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+V G P G I PL K S T + Q A+TR++V + G
Sbjct: 105 YWAVVRGGPAAQSGRIDLPLRKT------SSAATGWRMEAHPDGQPALTRWRV-RGRGPG 157
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
WL+L P TGR HQLRVHCA G PI+GD YG
Sbjct: 158 LAWLELRPETGRTHQLRVHCASQ-GWPILGDPFYG 191
>gi|404368048|ref|ZP_10973407.1| RluA family pseudouridine synthase [Fusobacterium ulcerans ATCC
49185]
gi|313690514|gb|EFS27349.1| RluA family pseudouridine synthase [Fusobacterium ulcerans ATCC
49185]
Length = 296
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 3 SSITASHVYEKCIAVSSGIITVERVMYKDND-NEKRILQRWYWALVVGTPRCSKGVISAP 61
I Y + +SG+I V + + + EK I+ ++Y A+V GT + +I P
Sbjct: 117 GKIMVPRFYNRLDMNTSGLIIVAKNSFAQSFLQEKGIVNKFYKAIVKGTVEKDEFLIDRP 176
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 121
+GK+ D+ + I+V + Q A T+ +VIK T ++ LTGR HQ+R H
Sbjct: 177 IGKIG-DDLRRREISVED-----GGQEAQTKIKVIK-RFKDLTLIEAELLTGRTHQIRAH 229
Query: 122 CAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 178
A + G P++GD YG + R +Q S ++ S+ E + KT+ + + IL
Sbjct: 230 MA-LEGYPLLGDELYGGEDKRAKRQMLHSYKTQFSDVETGQLKTVEIDIPDDMKKIL 285
>gi|307151795|ref|YP_003887179.1| pseudouridine synthase [Cyanothece sp. PCC 7822]
gi|306982023|gb|ADN13904.1| pseudouridine synthase [Cyanothece sp. PCC 7822]
Length = 562
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 20/154 (12%)
Query: 12 EKCIAV------SSGIITVERVMYKDNDNEKRILQR----WYWALVVGTPRCSKGVISAP 61
++C+ V +SGI+ + R N ++ QR Y ALV G KG I+ P
Sbjct: 399 DQCMVVHRLDQDTSGILLLARHRQIYNHLAQQFRQRKIHKVYHALVKGGVSAQKGTINLP 458
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 121
L D R V + ++T +QVI + +T L+ P+TGR HQ+RVH
Sbjct: 459 LWG---DPNTRPRQKV----DFCYGKESITHFQVIAVA-ENFTRLEFIPVTGRTHQIRVH 510
Query: 122 CAEV--LGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
CA+ LGTPI+GD YG ++ H LS
Sbjct: 511 CADQNGLGTPIIGDRLYGHESATTRLHLHAYSLS 544
>gi|443315971|ref|ZP_21045436.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
gi|442784409|gb|ELR94284.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 18 SSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
++G I V + D + ++ +R Y +V G PR G + APLG+ D +
Sbjct: 138 TTGAIVVAKTDLAHQDLQAQMKAKTARREYLGVVYGAPREQGGTVDAPLGRDPSDRKRQA 197
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+TV ++AVT +QV + +T + TGR HQ+RVHCA LG PIVGD
Sbjct: 198 IVTVEK-----GGRNAVTHWQV-QERIGNFTVMAFRLETGRTHQIRVHCAH-LGHPIVGD 250
Query: 134 YKYG 137
YG
Sbjct: 251 PVYG 254
>gi|260833883|ref|XP_002611941.1| hypothetical protein BRAFLDRAFT_126415 [Branchiostoma floridae]
gi|229297314|gb|EEN67950.1| hypothetical protein BRAFLDRAFT_126415 [Branchiostoma floridae]
Length = 335
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 32/168 (19%)
Query: 43 YWALVVGTPRCSKGVISAPLGKV--------------VVDNGKSDRITVVNNDQIMSAQH 88
YW L +G P +GV+ P+ ++ V + + ++ V + AQ
Sbjct: 154 YWVLTMGVPSHEEGVVDIPIKELEVTAQGRPHHRMVCVPEYSEETKLIVKKKRKSSDAQI 213
Query: 89 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 148
A+T ++V+ SC ++ P TG KHQ+R H + LG PI+GD+KY
Sbjct: 214 AITNFRVLD-SCGSCALVECQPETGVKHQIRSHLSYGLGCPILGDHKY------------ 260
Query: 149 PSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 196
S SK + + +P FG+ L +HLH +++ LP
Sbjct: 261 -SHHSKLAPQRLPTGMLERFGIQQPKARYLP----MHLHARQIVLPGF 303
>gi|434382260|ref|YP_006704043.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli WesB]
gi|404430909|emb|CCG56955.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli WesB]
Length = 222
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + Y +N+ + R + + Y A+V G P+ KG I + K + K
Sbjct: 59 TSGILILAKDNNTKTYFENEFKNREINKVYHAIVEGVPKNIKGTIDIQIAKDTKNPNK-- 116
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI V +I A+T Y+V+K ++ L+L P+TGR HQ+RVH + LG PI+GD
Sbjct: 117 RIAVKKGGEI-----AITHYKVLK-KFKLHSLLELKPITGRTHQIRVHLS-YLGNPIIGD 169
>gi|383481276|ref|YP_005390191.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
gi|378933615|gb|AFC72118.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
Length = 303
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIDK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A +LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-ARLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGKEIKLEAKLPF 296
>gi|304319748|ref|YP_003853391.1| Ribosomal large subunit pseudouridine synthase C [Parvularcula
bermudensis HTCC2503]
gi|303298651|gb|ADM08250.1| Ribosomal large subunit pseudouridine synthase C [Parvularcula
bermudensis HTCC2503]
Length = 324
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 44/154 (28%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+ G P G I + K G+ R + +Q Q A+T YQ ++ +
Sbjct: 178 YWAITKGVPHPLFGRIDMRIEKA----GEPGREKMRGTEQ---GQSALTDYQTVETAGQK 230
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPK 162
+L L P TGR HQ+RVH + +GTPIVGD KYG
Sbjct: 231 AAFLALRPHTGRTHQIRVHLS-AIGTPIVGDRKYGG------------------------ 265
Query: 163 EKTLHFGLDLESGSILEKQP-RLHLHCKEMTLPN 195
+G++LE P ++HL C++M +P
Sbjct: 266 -----------AGAVLEGLPNQMHLFCRQMHVPR 288
>gi|379714128|ref|YP_005302466.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
massiliae str. AZT80]
gi|376334774|gb|AFB32006.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
massiliae str. AZT80]
Length = 303
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ +++ A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITNIDSE---NSKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A +LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-ARLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGKEIKLEAKLPF 296
>gi|359436147|ref|ZP_09226266.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20311]
gi|359447558|ref|ZP_09237152.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20439]
gi|358029136|dbj|GAA62515.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20311]
gi|358038656|dbj|GAA73401.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20439]
Length = 555
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G G I PL V+D R V + + + ++T +QV
Sbjct: 428 ERSVEKRYVALVAGNIAAESGSIELPL---VLDFDDKPRQMVCDK----TGKPSLTTWQV 480
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + T L+L P TGR HQLRVHCA LG TPIVGD YG + R
Sbjct: 481 LERK-NNTTRLQLYPKTGRTHQLRVHCAHHLGLNTPIVGDTHYGKKAER 528
>gi|169831112|ref|YP_001717094.1| RluA family pseudouridine synthase [Candidatus Desulforudis
audaxviator MP104C]
gi|169637956|gb|ACA59462.1| pseudouridine synthase, RluA family [Candidatus Desulforudis
audaxviator MP104C]
Length = 309
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + R Y ALV G PR G + AP+G+ D R+ V S + A T Y+V+
Sbjct: 165 RAVLRRYTALVHGRPRRETGTVDAPIGRHPRDR---QRMAVTPR----SGRAARTHYRVV 217
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ ++ L+L+ TGR HQ+RVH A V G P+VGD KYG
Sbjct: 218 R-RFDKFSLLELTLDTGRTHQIRVHMAHV-GHPLVGDLKYG 256
>gi|296216599|ref|XP_002754668.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Callithrix jacchus]
Length = 397
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +++GK ++ N Q+
Sbjct: 185 YWAITVRVPIPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMEDGKMVKMRSSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+Y+V+ S ++L P+TG KHQLRVH + L P++GD+KY W
Sbjct: 243 ---AVTQYRVLS-STLSSALMELHPITGVKHQLRVHLSFGLDCPVLGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSRKEELNL 341
>gi|157827593|ref|YP_001496657.1| ribosomal large subunit pseudouridine synthase [Rickettsia bellii
OSU 85-389]
gi|157802897|gb|ABV79620.1| Ribosomal large subunit pseudouridine synthase [Rickettsia bellii
OSU 85-389]
Length = 310
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 10/121 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++++ Y A+ G P +G + + K G +IT +N++ + + A+T Y+
Sbjct: 173 KEKLVEKTYLAVTYGKPIKDQGEVKTNIEK---SKGSIPKITDINDN---NGKLAITYYK 226
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG---WQTHRKWKQFHPSD 151
++K + ++ P+TGR HQLR+H A++LG PI GD KYG + K+ H ++
Sbjct: 227 LLKSLTNNLFLVEFIPITGRMHQLRLH-AKLLGCPIFGDNKYGNDKLMPYSKYMFLHANN 285
Query: 152 L 152
+
Sbjct: 286 I 286
>gi|407474149|ref|YP_006788549.1| RluA family pseudouridine synthase [Clostridium acidurici 9a]
gi|407050657|gb|AFS78702.1| pseudouridine synthase, RluA family [Clostridium acidurici 9a]
Length = 302
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 18 SSGIITVERVMYKDNDNEKRILQ----RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + + + D +++ + R Y+ALV G + G I+AP+G+ +D K
Sbjct: 140 TSGLLMIAKNNFAHEDLAQQLKEHSTTRKYYALVEGNIKEDSGTINAPIGRHPIDRKK-- 197
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+TV + + ++ A+T ++V++ YT ++ TGR HQ+RVH A + P+VGD
Sbjct: 198 -MTVTDKN----SKEAITHFKVLE-RFEKYTLIEAQLETGRTHQIRVHMA-FINHPVVGD 250
Query: 134 YKYGWQTHR 142
YG++ +
Sbjct: 251 PVYGYKNQK 259
>gi|433772820|ref|YP_007303287.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433664835|gb|AGB43911.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 351
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRI-TVVNNDQIMSAQHAVTRYQVIK 97
L+R Y ALV G P+ G I APLG+ SDR+ V + A+HAVTR+ V +
Sbjct: 191 LERAYLALVWGIPQRPTGTIDAPLGRA------SDRVRRAVVPEGRDDARHAVTRFAVQE 244
Query: 98 PSCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
G + L TGR HQ+RVH A + G P++GD YG K +
Sbjct: 245 RFGEGQREFAAASLVECRLETGRTHQIRVHMAHI-GHPVIGDPDYGLAFRTKANRL 299
>gi|307109077|gb|EFN57316.1| hypothetical protein CHLNCDRAFT_143940 [Chlorella variabilis]
Length = 330
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 23/105 (21%)
Query: 38 ILQRWYWALVVGTPRC-------SKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
I+++ YWA VV P + G IS P V G+ + +AQ A
Sbjct: 204 IIRKQYWA-VVALPEGGAAHRLPAAGAISLP-----VPGGRGG---------VAAAQPAP 248
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYK 135
TRY+V+ G WL+L+P TGRKHQLR+HCA+ LG I+GD +
Sbjct: 249 TRYRVLH-RGGGLAWLELAPATGRKHQLRLHCAQGLGAAILGDGR 292
>gi|157828222|ref|YP_001494464.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165932925|ref|YP_001649714.1| hypothetical protein RrIowa_0413 [Rickettsia rickettsii str. Iowa]
gi|378721024|ref|YP_005285911.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Colombia]
gi|378722378|ref|YP_005287264.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Arizona]
gi|378723735|ref|YP_005288619.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hauke]
gi|379016712|ref|YP_005292947.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Brazil]
gi|379017524|ref|YP_005293759.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hino]
gi|379018851|ref|YP_005295085.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hlp#2]
gi|157800703|gb|ABV75956.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165908012|gb|ABY72308.1| hypothetical protein RrIowa_0413 [Rickettsia rickettsii str. Iowa]
gi|376325236|gb|AFB22476.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Brazil]
gi|376326048|gb|AFB23287.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Colombia]
gi|376327402|gb|AFB24640.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Arizona]
gi|376330090|gb|AFB27326.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hino]
gi|376331431|gb|AFB28665.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hlp#2]
gi|376332750|gb|AFB29983.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hauke]
Length = 303
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H +
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKAIMPYSKYMFLHAHN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGQEIKLEAKLPF 296
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040287|gb|ACT57083.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRI-TVVNNDQIMSAQHAVTRYQVI- 96
L+R Y+A+V G P G+I+APLG+ KS+R+ V +A A+T YQ I
Sbjct: 181 LKRAYYAMVWGIPLPDSGIINAPLGRC-----KSNRLRRAVKGIDDKTADSAITHYQTIE 235
Query: 97 ---KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
K S + LK TGR HQ+RVH A G P++GD YG
Sbjct: 236 IYNKNSNFAVSLLKCHLETGRTHQIRVHMAHK-GNPLIGDPLYG 278
>gi|91205071|ref|YP_537426.1| ribosomal large subunit pseudouridine synthase [Rickettsia bellii
RML369-C]
gi|122425980|sp|Q1RJX7.1|RLUC_RICBR RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|91068615|gb|ABE04337.1| Ribosomal large subunit pseudouridine synthase [Rickettsia bellii
RML369-C]
Length = 301
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 10/121 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++++ Y A+ G P +G + + K G +IT +N++ + + A+T Y+
Sbjct: 164 KEKLVEKTYLAVTYGKPIKDQGEVKTNIEK---SKGSIPKITDINDN---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG---WQTHRKWKQFHPSD 151
++K + ++ P+TGR HQLR+H A++LG PI GD KYG + K+ H ++
Sbjct: 218 LLKSLTNNLFLVEFIPITGRMHQLRLH-AKLLGCPIFGDNKYGNDKLMPYSKYMFLHANN 276
Query: 152 L 152
+
Sbjct: 277 I 277
>gi|406881564|gb|EKD29593.1| hypothetical protein ACD_78C00346G0006, partial [uncultured
bacterium (gcode 4)]
Length = 324
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 71/125 (56%), Gaps = 11/125 (8%)
Query: 18 SSGIITVERVM----YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + + N + +++ Y A+ +GTP ++GVI L ++ +N + +
Sbjct: 154 TSGIVMIAKTKPSLDFMLNALQSNKIEKVYLAVCLGTPPETRGVIRRKLRRL--ENAERE 211
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHG-YTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+++++ Q AVT Y+V++ HG Y+ ++ TGR HQ+RVH A + G P++G
Sbjct: 212 NKIIIDDE---GGQTAVTHYKVLETGIHGKYSLVECVLETGRMHQIRVHLASI-GCPVLG 267
Query: 133 DYKYG 137
D YG
Sbjct: 268 DTTYG 272
>gi|422846563|ref|ZP_16893246.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK72]
gi|325687371|gb|EGD29392.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK72]
Length = 298
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ V + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMVAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + + QF
Sbjct: 244 AGDEVYGPRKTLKGYGQF 261
>gi|307109075|gb|EFN57314.1| hypothetical protein CHLNCDRAFT_12398, partial [Chlorella
variabilis]
Length = 198
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 87 QHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Q A+TRY+V+ G WL+L+P TGRKHQLR+HCA+ LG I+GD +YG
Sbjct: 149 QPALTRYRVLHRG-GGLAWLELAPATGRKHQLRLHCAQGLGAAILGDGRYG 198
>gi|392538263|ref|ZP_10285400.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas marina
mano4]
Length = 550
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G G I PL D R V + A+T +QV
Sbjct: 423 ERTIEKRYVALVDGNIEQESGTIELPL---TPDFDDKPRQKVC----YQKGKPALTTWQV 475
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + T L+L P TGR HQLRVHCA VLG TPI+GD YG + R
Sbjct: 476 LE-RKNNTTRLQLYPKTGRTHQLRVHCAHVLGLNTPIIGDTHYGKKADR 523
>gi|153814897|ref|ZP_01967565.1| hypothetical protein RUMTOR_01112 [Ruminococcus torques ATCC 27756]
gi|317500410|ref|ZP_07958634.1| pseudouridine synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089583|ref|ZP_08338482.1| hypothetical protein HMPREF1025_02065 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438899|ref|ZP_08618520.1| hypothetical protein HMPREF0990_00914 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145847928|gb|EDK24846.1| pseudouridine synthase, RluA family [Ruminococcus torques ATCC
27756]
gi|316898165|gb|EFV20212.1| pseudouridine synthase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404951|gb|EGG84489.1| hypothetical protein HMPREF1025_02065 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017389|gb|EGN47151.1| hypothetical protein HMPREF0990_00914 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 303
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y A+V G + GV++AP+G+ +D K + + + +HAVT Y V++
Sbjct: 165 ITRRYHAIVHGKIKEDNGVVNAPIGRHPIDRKKM-------STKAKNGKHAVTHYTVLR- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT+++ TGR HQ+RVH A + G PI+GD YG
Sbjct: 217 RFKDYTYIECELETGRTHQIRVHMASI-GHPILGDSMYG 254
>gi|118579004|ref|YP_900254.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118501714|gb|ABK98196.1| pseudouridine synthase, RluA family [Pelobacter propionicus DSM
2379]
Length = 306
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 17/111 (15%)
Query: 29 YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH 88
+ D EKR Y ALV GTP + + P+GK+ S R +V +
Sbjct: 157 FHDGQVEKR-----YLALVSGTPGQIEWRVDGPIGKIA-----SARYGIV-----AGGRS 201
Query: 89 AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
A+T ++++ SC GY ++ PLTGR HQ+RVH + G PIVGD YG +
Sbjct: 202 ALTEFRLLAESC-GYALVEAKPLTGRTHQIRVHL-QSCGLPIVGDGTYGGE 250
>gi|402829215|ref|ZP_10878091.1| pseudouridine synthase, RluA family [Slackia sp. CM382]
gi|402284196|gb|EJU32699.1| pseudouridine synthase, RluA family [Slackia sp. CM382]
Length = 316
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
D R + R Y ALV G G+I AP+G+ DR+ + +D+ SA+ A T
Sbjct: 162 EDIASRDVDRHYLALVHGWIPLDTGLIDAPIGR-----SAKDRLRMCVSDR-ESARPAST 215
Query: 92 RYQVIK---PSCH--GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW-- 144
++V++ PS GYT + TGR HQ+RVH AE + P VGD YGW H
Sbjct: 216 SFRVVRRFEPSRRDDGYTLIDCKLFTGRTHQIRVH-AEYIKHPCVGDPTYGWPKHDNLGL 274
Query: 145 -KQF---------HPSDLSKDSNEE 159
+QF HPS ++ S E+
Sbjct: 275 ERQFLHSYRLAFTHPSTGTRLSFED 299
>gi|33864373|ref|NP_895933.1| pseudouridylate synthase specific to ribosomal large subunit
[Prochlorococcus marinus str. MIT 9313]
gi|33641153|emb|CAE22283.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9313]
Length = 324
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
CI ++ + E ++ +KRI R Y A+V G P +G I A +G+ VD K
Sbjct: 158 CIVIAK---SQEALVKLQEQIQKRIASRNYLAVVHGAPSGDQGTIVAAIGRHPVDRKK-- 212
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
VV D +HA T + +++ Y+ L+ TGR HQ+RVHCA + G PIVGD
Sbjct: 213 -YAVVTED---GGRHACTHWTLVE-RLADYSLLRFKLDTGRTHQIRVHCAHI-GHPIVGD 266
Query: 134 YKY 136
Y
Sbjct: 267 PIY 269
>gi|269215565|ref|ZP_06159419.1| ribosomal large subunit pseudouridine synthase D [Slackia exigua
ATCC 700122]
gi|269131052|gb|EEZ62127.1| ribosomal large subunit pseudouridine synthase D [Slackia exigua
ATCC 700122]
Length = 316
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
D R + R Y ALV G G+I AP+G+ DR+ + +D+ SA+ A T
Sbjct: 162 EDIAARDVDRHYLALVHGWIPLDTGLIDAPIGR-----SAKDRLRMCVSDR-ESARPAST 215
Query: 92 RYQVIK---PSCH--GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW-- 144
++V++ PS GYT + TGR HQ+RVH AE + P VGD YGW H
Sbjct: 216 SFRVVRRFEPSRRDDGYTLIDCKLFTGRTHQIRVH-AEYIKHPCVGDPTYGWPKHDNLGL 274
Query: 145 -KQF---------HPSDLSKDSNEE 159
+QF HPS ++ S E+
Sbjct: 275 ERQFLHSYRLAFTHPSTGARLSFED 299
>gi|379712094|ref|YP_005300433.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
philipii str. 364D]
gi|376328739|gb|AFB25976.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
philipii str. 364D]
Length = 303
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H +
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKAIMPYSKYMFLHAHN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGQEIKLETKLPF 296
>gi|338813367|ref|ZP_08625496.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
gi|337274726|gb|EGO63234.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
Length = 308
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KRI R Y+A+V G + +GV++AP+G+ D K + + +++ AVT ++
Sbjct: 165 QKRIAGRKYFAVVWGNIKEEQGVVNAPIGRHPADRKKMAVVPI-------NSKPAVTHFR 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+++ +T ++ TGR HQ+RVH A +G P+VGD KYG
Sbjct: 218 ILE-RFRNFTLIECKLETGRTHQIRVHMA-YIGYPVVGDPKYG 258
>gi|392407271|ref|YP_006443879.1| RluA family pseudouridine synthase [Anaerobaculum mobile DSM 13181]
gi|390620407|gb|AFM21554.1| pseudouridine synthase, RluA family [Anaerobaculum mobile DSM
13181]
Length = 304
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 16/147 (10%)
Query: 3 SSITASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVI 58
S + + + A +SG++ + R +Y + R +++ Y ALV G PR KG I
Sbjct: 119 SDLRRPGIVHRLDAGTSGLMVIARNLYAKQQLMASFKSRSVRKAYLALVEGRPREPKGHI 178
Query: 59 SAPLGKVVVDNGKSD-RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQ 117
+P+G+ N K+ ++ VV+ + A+T Y+V+ + +++L+ TGR HQ
Sbjct: 179 ISPIGR----NPKNRLKMAVVSQ-----GKEAITEYEVLW-TTGMFSFLRCIIHTGRTHQ 228
Query: 118 LRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+R+H E LG PI+GD YG + W
Sbjct: 229 IRIHLKE-LGCPIIGDKLYGAKFKAPW 254
>gi|119469873|ref|ZP_01612711.1| ribosomal large subunit pseudouridine synthase A [Alteromonadales
bacterium TW-7]
gi|119446856|gb|EAW28128.1| ribosomal large subunit pseudouridine synthase A [Alteromonadales
bacterium TW-7]
Length = 550
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G G I PL D R V + A+T +QV
Sbjct: 423 ERTIEKRYVALVDGNIEQESGTIELPL---TPDFDDKPRQKVC----YQKGKPALTTWQV 475
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + T L+L P TGR HQLRVHCA VLG TPI+GD YG + R
Sbjct: 476 LE-RKNNTTRLQLYPKTGRTHQLRVHCAHVLGLNTPIIGDTHYGKKADR 523
>gi|393781093|ref|ZP_10369294.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
gi|392677428|gb|EIY70845.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
Length = 539
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ Y AL+ GTP +G I PL +D + VV+ + S + A+TRY+V+
Sbjct: 413 RTVKKRYIALLDGTPAQDEGEIKLPLCPDPLDRPRQ----VVHEE---SGKLAITRYKVL 465
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
+ + T + PLTGR HQLRVH A LG PI GD YG + R +
Sbjct: 466 EKKGN-RTRIAFYPLTGRTHQLRVHAAHPLGLNCPIAGDELYGRRAERLY 514
>gi|254796911|ref|YP_003081748.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
gi|254590147|gb|ACT69509.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
Length = 305
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R++++ Y A+V+G + KG + + KV+ + V+ + I + +HA+T++ VI
Sbjct: 165 RLVKKRYLAIVIGELKEKKGAVDCYINKVLFKGEE-----VMQCNHIGNGEHAITQFHVI 219
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
K + + ++L PLTGRKHQ+R A + G P++ D KYG
Sbjct: 220 KKFKNA-SLIELFPLTGRKHQIRSQMASI-GHPVLNDGKYG 258
>gi|421277207|ref|ZP_15728027.1| pseudouridine synthase [Streptococcus mitis SPAR10]
gi|395876488|gb|EJG87564.1| pseudouridine synthase [Streptococcus mitis SPAR10]
Length = 297
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|167645618|ref|YP_001683281.1| pseudouridine synthase [Caulobacter sp. K31]
gi|167348048|gb|ABZ70783.1| pseudouridine synthase [Caulobacter sp. K31]
Length = 286
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 39 LQRWYWALVV-GTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
++ YWA+V G P G I +PL + + G+ + V D A+ A +RY+ +
Sbjct: 132 FRKTYWAIVTPGAPEPRGGQIDSPLRRESI--GREAYMRVCEADH-PDAETARSRYRTLA 188
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ G ++LSP TGR HQLRVH A + G PI GD +YG
Sbjct: 189 -ATEGAALVELSPDTGRMHQLRVHMASI-GRPIAGDSRYG 226
>gi|349686308|ref|ZP_08897450.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter oboediens 174Bp2]
Length = 252
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+V G P ++GVI PL + V++ + R+ V Q A TR++V+ G
Sbjct: 102 YWAIVQGAPDAAQGVIDVPLAR--VEHDRQWRMQPVKT----GGQPARTRWRVLGTGHDG 155
Query: 103 ----YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+WL+L TGR HQ R HCA + G PI GD +YG
Sbjct: 156 AGQPISWLELVLETGRTHQARAHCAAI-GCPIRGDTRYG 193
>gi|15604128|ref|NP_220643.1| hypothetical protein RP258 [Rickettsia prowazekii str. Madrid E]
gi|383487099|ref|YP_005404779.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. GvV257]
gi|383487676|ref|YP_005405355.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Chernikova]
gi|383488522|ref|YP_005406200.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Katsinyian]
gi|383489364|ref|YP_005407041.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Dachau]
gi|383499500|ref|YP_005412861.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. BuV67-CWPP]
gi|383500339|ref|YP_005413699.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. RpGvF24]
gi|386082092|ref|YP_005998669.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
prowazekii str. Rp22]
gi|14423907|sp|Q9ZDR7.1|RLUC_RICPR RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|3860820|emb|CAA14720.1| unknown [Rickettsia prowazekii str. Madrid E]
gi|292571856|gb|ADE29771.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
prowazekii str. Rp22]
gi|380757464|gb|AFE52701.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. GvV257]
gi|380758036|gb|AFE53272.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. RpGvF24]
gi|380760555|gb|AFE49077.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Chernikova]
gi|380761401|gb|AFE49922.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Katsinyian]
gi|380762246|gb|AFE50766.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. BuV67-CWPP]
gi|380763087|gb|AFE51606.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Dachau]
Length = 303
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
N +++++ + Y+A+ G P + G + + +GK R++ + N + A+T
Sbjct: 161 NAFKEKLVIKKYFAITYGRPVKNVGTVKSNIGK------SKRRLSKIANIDSDDGKLAIT 214
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFH 148
Y+++K + ++ P+TGR HQLR+H A++LG PI+GD KYG + + K+ H
Sbjct: 215 YYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQLLGCPILGDDKYGNKEIMPYSKYMFLH 273
Query: 149 PSDL 152
+++
Sbjct: 274 ANNI 277
>gi|419779021|ref|ZP_14304902.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
gi|383186785|gb|EIC79250.1| pseudouridine synthase, RluA family [Streptococcus oralis SK10]
Length = 299
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|386757595|ref|YP_006230811.1| RNA pseudouridine synthase [Bacillus sp. JS]
gi|384930877|gb|AFI27555.1| RNA pseudouridine synthase [Bacillus sp. JS]
Length = 302
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D EK++L+R Y A+ G R KG I +P+G+ DR +S Q AV
Sbjct: 158 DQQLEKKMLKRTYTAIAEGKLRTKKGTIDSPIGR--------DRSHPTRRRVSLSGQAAV 209
Query: 91 TRYQVIKPSC-HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
T ++V+ + + ++L TGR HQ+RVH A + G P++GD YG
Sbjct: 210 THFKVMASNVKERLSLVELELETGRTHQIRVHMASI-GHPLIGDSLYG 256
>gi|383483684|ref|YP_005392597.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
parkeri str. Portsmouth]
gi|378936038|gb|AFC74538.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
parkeri str. Portsmouth]
Length = 303
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
N +++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T
Sbjct: 161 NAFKEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAIT 214
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFH 148
Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H
Sbjct: 215 YYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLH 273
Query: 149 PSDL 152
+++
Sbjct: 274 ANNI 277
>gi|154498381|ref|ZP_02036759.1| hypothetical protein BACCAP_02370 [Bacteroides capillosus ATCC
29799]
gi|150272449|gb|EDM99634.1| pseudouridine synthase, RluA family [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 18/120 (15%)
Query: 27 VMYKDNDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
V++ N+ KR LQ R Y A+ VG P +GV+ + L + S R+ V
Sbjct: 141 VLFARNEEMKRALQEDWDSLVKERIYLAVTVGAPEREEGVVRSWLRET------STRV-V 193
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ A+ AVTRY+V+ S Y ++++ TGRK+Q+RVH A+ LG P+ GD KYG
Sbjct: 194 YSGGPGSGAKEAVTRYKVLARSGE-YALVRVALDTGRKNQIRVHMAD-LGCPVAGDKKYG 251
>gi|443245174|ref|YP_007378400.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442802573|gb|AGC78378.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 557
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 18 SSGIITVERVMY----KDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + + N EKR +++ Y AL+ G + G I L +V +DN
Sbjct: 408 TSGILVLTKSLAVHKKLQNQFEKRTVKKRYVALLDGLVKDDSGFIDLAL-RVDLDNRPFQ 466
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIV 131
+ N + A TRY+VI+ G T + P+TGR HQLRVH A LG PI+
Sbjct: 467 LVDAEN------GKSARTRYEVIE-RKDGKTRVHFYPITGRTHQLRVHAAHPLGLNCPII 519
Query: 132 GDYKYGWQTHRKW 144
GD YG + R +
Sbjct: 520 GDDLYGHKKDRLY 532
>gi|15892267|ref|NP_359981.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
conorii str. Malish 7]
gi|20139551|sp|Q92IS6.1|RLUC_RICCN RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|15619407|gb|AAL02882.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
conorii str. Malish 7]
Length = 303
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 74/124 (59%), Gaps = 10/124 (8%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
N +++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T
Sbjct: 161 NAFKEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAIT 214
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFH 148
Y+V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H
Sbjct: 215 YYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLH 273
Query: 149 PSDL 152
+++
Sbjct: 274 ANNI 277
>gi|410479981|ref|YP_006767618.1| 23S RNA-specific pseudouridylate synthase [Leptospirillum
ferriphilum ML-04]
gi|406775233|gb|AFS54658.1| pseudouridylate synthase, 23S RNA-specific [Leptospirillum
ferriphilum ML-04]
Length = 339
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V + V+ N + R + + Y ALV G +G I+AP+G+ D K
Sbjct: 168 TSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKK-- 225
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
TV + + +VTRY+V++ Y+ L+++ LTGR HQ+RVH LG P++GD
Sbjct: 226 -FTVRQD-----GKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVHF-RYLGFPLLGD 278
Query: 134 YKYG 137
YG
Sbjct: 279 AVYG 282
>gi|424866626|ref|ZP_18290458.1| Pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II 'C75']
gi|124516586|gb|EAY58094.1| ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum rubarum]
gi|387222715|gb|EIJ77134.1| Pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II 'C75']
Length = 339
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V + V+ N + R + + Y ALV G +G I+AP+G+ D K
Sbjct: 168 TSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKK-- 225
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
TV + + +VTRY+V++ Y+ L+++ LTGR HQ+RVH LG P++GD
Sbjct: 226 -FTVRQD-----GKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVHF-RYLGFPLLGD 278
Query: 134 YKYG 137
YG
Sbjct: 279 AVYG 282
>gi|124024488|ref|YP_001018795.1| pseudouridylate synthase [Prochlorococcus marinus str. MIT 9303]
gi|123964774|gb|ABM79530.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9303]
Length = 324
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
CI ++ + E ++ +KRI R Y A+V G P +G I A +G+ VD K
Sbjct: 158 CIVIAK---SQEALVKLQQQIQKRIASRNYLAVVHGAPTGDQGTIVAAIGRHPVDRKK-- 212
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
VV D +HA T + +++ Y+ L+ TGR HQ+RVHCA + G PIVGD
Sbjct: 213 -YAVVTED---GGRHACTHWTLVE-RLGDYSLLRFQLDTGRTHQIRVHCAHI-GHPIVGD 266
Query: 134 YKY 136
Y
Sbjct: 267 PIY 269
>gi|288803452|ref|ZP_06408884.1| ribosomal large subunit pseudouridine synthase A [Prevotella
melaninogenica D18]
gi|288334062|gb|EFC72505.1| ribosomal large subunit pseudouridine synthase A [Prevotella
melaninogenica D18]
Length = 571
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 54 SKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLK-----L 108
++G I PL + D+ R+ N + A+T Y++I + +G LK L
Sbjct: 458 AEGRIELPLS-LDPDDRPRQRVDRTN------GKPAITEYRLIGKTTYGKETLKAVKIEL 510
Query: 109 SPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW 144
PLTGR HQLRVHCA + LGTPI+GD YG + R W
Sbjct: 511 YPLTGRTHQLRVHCAHPDGLGTPIIGDNLYGQRAERLW 548
>gi|306829292|ref|ZP_07462482.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis ATCC 6249]
gi|304428378|gb|EFM31468.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
mitis ATCC 6249]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|440908886|gb|ELR58863.1| RNA pseudouridylate synthase domain-containing protein 4 [Bos
grunniens mutus]
Length = 377
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ +D+GK R+
Sbjct: 179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYCMDDGKMVRVRSSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 N-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 291 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 334
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 335 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 365
>gi|293365185|ref|ZP_06611902.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
oralis ATCC 35037]
gi|307703723|ref|ZP_07640664.1| pseudouridine synthase, RluA family protein [Streptococcus oralis
ATCC 35037]
gi|291316635|gb|EFE57071.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
oralis ATCC 35037]
gi|307622558|gb|EFO01554.1| pseudouridine synthase, RluA family protein [Streptococcus oralis
ATCC 35037]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|417915153|ref|ZP_12558774.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
SK95]
gi|342835267|gb|EGU69518.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
SK95]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|335029985|ref|ZP_08523484.1| pseudouridine synthase, RluA family [Streptococcus infantis SK1076]
gi|334267447|gb|EGL85907.1| pseudouridine synthase, RluA family [Streptococcus infantis SK1076]
Length = 296
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|331266599|ref|YP_004326229.1| 23S rluA family pseudouridine synthase [Streptococcus oralis Uo5]
gi|419783245|ref|ZP_14309036.1| pseudouridine synthase, RluA family [Streptococcus oralis SK610]
gi|326683271|emb|CBZ00889.1| 23S rluA family pseudouridine synthase [Streptococcus oralis Uo5]
gi|383182399|gb|EIC74954.1| pseudouridine synthase, RluA family [Streptococcus oralis SK610]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|302391670|ref|YP_003827490.1| ribosomal large subunit pseudouridine synthase D [Acetohalobium
arabaticum DSM 5501]
gi|302203747|gb|ADL12425.1| ribosomal large subunit pseudouridine synthase D [Acetohalobium
arabaticum DSM 5501]
Length = 308
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R ++ Y ALV G + +K I A +G+ D R+ V + ++ AVTR++V
Sbjct: 164 ERRTEKIYLALVEGNIKHNKAKIDAAIGR---DPYNRKRMAVTKRN----SKQAVTRFEV 216
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 138
++ YTW+KL TGR HQ+RVH + + P+VGD YG+
Sbjct: 217 LE-RFGNYTWVKLKLETGRTHQIRVHMS-YIDNPVVGDRLYGY 257
>gi|426252346|ref|XP_004019875.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Ovis aries]
Length = 401
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ VD+GK R+
Sbjct: 195 RQVTKKYWAITVRVPVPEAGVVDIPIIEKEAQGQQHHHKMTLSPSYRVDDGKMVRVRSSR 254
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+YQV+ S L+L P+TG KHQLRVH + L P++GD+KY
Sbjct: 255 N-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVHLSFGLDCPVLGDHKYS-- 306
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 307 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 350
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 351 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 381
>gi|306825452|ref|ZP_07458792.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432390|gb|EFM35366.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|414155728|ref|ZP_11412038.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410872663|gb|EKS20604.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 296
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +G+I AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK-QF 147
YT ++L TGR HQ+RVH A +G P+ GD YG + K K QF
Sbjct: 211 RFGDYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGKGQF 259
>gi|315612946|ref|ZP_07887857.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 49296]
gi|315315056|gb|EFU63097.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 49296]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|422823680|ref|ZP_16871868.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK405]
gi|422855614|ref|ZP_16902272.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1]
gi|324993007|gb|EGC24927.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK405]
gi|327462303|gb|EGF08630.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1]
Length = 298
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ YT ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYTLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|153940691|ref|YP_001390824.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
Langeland]
gi|384461876|ref|YP_005674471.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
230613]
gi|152936587|gb|ABS42085.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
Langeland]
gi|295318893|gb|ADF99270.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
230613]
Length = 305
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + +HAVT Y+VI+
Sbjct: 166 ISRVYMALVEGIIKYEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECRLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|443327970|ref|ZP_21056575.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
gi|442792379|gb|ELS01861.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
Length = 322
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR--ITVVNNDQIMSAQHAVTRYQVIK 97
+R YW +V G P+ G I+ P+G+ KSDR + V+ DQ + A+T + +++
Sbjct: 180 RREYWGVVCGCPKTESGQINLPIGR-----HKSDRKKMAVIPVDQ--GGREAITHWSILE 232
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++ TGR HQ+RVHC G PIVGD YG
Sbjct: 233 -RLSNYTLMQFLLETGRTHQIRVHCT-YNGNPIVGDMLYG 270
>gi|429769328|ref|ZP_19301441.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
gi|429187342|gb|EKY28258.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
Length = 241
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R Q+ Y ALV P G I++ L + + G+ + VV D AQ A + Y+
Sbjct: 95 QMRKFQKTYLALVAAAPEPKSGRITSALRREEI--GRESYMRVVAFDAP-GAQGAASGYR 151
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ S G ++LSP TGR HQLRVH A + G P+VGD +YG
Sbjct: 152 TLASSQDGAV-VELSPETGRMHQLRVHMASI-GRPLVGDVRYG 192
>gi|406587502|ref|ZP_11062382.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD1S]
gi|419813600|ref|ZP_14338413.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD2S]
gi|419816963|ref|ZP_14341134.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD4S]
gi|404466504|gb|EKA11836.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD4S]
gi|404472711|gb|EKA17126.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD2S]
gi|404473015|gb|EKA17386.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD1S]
Length = 299
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|346314172|ref|ZP_08855693.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906530|gb|EGX76254.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 304
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + + R Y+ALV G + G I AP+G+ V D K +T N ++ A T +Q
Sbjct: 161 QSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDRQKM-AVTATN------SKDARTHFQ 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
VI+ YT ++ TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 214 VIE-RFENYTLVECRLETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|422327552|ref|ZP_16408579.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
gi|371663392|gb|EHO28582.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
Length = 304
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + + R Y+ALV G + G I AP+G+ V D K +T N ++ A T +Q
Sbjct: 161 QSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDRQKM-AVTATN------SKDARTHFQ 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
VI+ YT ++ TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 214 VIE-RFENYTLVECRLETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|313901079|ref|ZP_07834567.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|373121536|ref|ZP_09535404.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
gi|312954037|gb|EFR35717.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|371665554|gb|EHO30719.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
Length = 304
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + + R Y+ALV G + G I AP+G+ V D K +T N ++ A T +Q
Sbjct: 161 QSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDRQKM-AVTATN------SKDARTHFQ 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
VI+ YT ++ TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 214 VIE-RFENYTLVECRLETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|358464702|ref|ZP_09174663.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
058 str. F0407]
gi|357066669|gb|EHI76811.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
058 str. F0407]
Length = 299
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|168180134|ref|ZP_02614798.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226948812|ref|YP_002803903.1| RluA family pseudouridine synthase [Clostridium botulinum A2 str.
Kyoto]
gi|182669142|gb|EDT81118.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226841647|gb|ACO84313.1| pseudouridine synthase, RluA family [Clostridium botulinum A2 str.
Kyoto]
Length = 305
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + +HAVT Y+VI+
Sbjct: 166 ISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECRLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|83312904|ref|YP_423168.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947745|dbj|BAE52609.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 229
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ YW++ G+P G + APL KV G+ RI V + Q ++T +
Sbjct: 84 EHRRVEKVYWSVSHGSPAADSGTVDAPLLKVSA-RGQGWRIKVDP-----AGQPSITDWS 137
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ S G +W++ P TGR HQ+R+H A+ LG P++GD YG
Sbjct: 138 VLGRS-DGLSWIEWRPRTGRTHQIRIH-AQYLGCPLLGDAYYG 178
>gi|170756442|ref|YP_001781114.1| RluA family pseudouridine synthase [Clostridium botulinum B1 str.
Okra]
gi|429247523|ref|ZP_19210766.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
gi|169121654|gb|ACA45490.1| pseudouridine synthase, RluA family [Clostridium botulinum B1 str.
Okra]
gi|428755477|gb|EKX78105.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
Length = 305
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 18 SSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ V + N+ + + R Y ALV G + +G I AP+G+ VD K
Sbjct: 141 TSGILVVAKNDISHNNLAAQFKEHSISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIK-- 198
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ VV + +HAVT Y+VI+ +T ++ TGR HQ+RVH + ++ P+VGD
Sbjct: 199 -MAVVKD-----GRHAVTHYKVIE-RFKNHTLVECRLETGRTHQIRVHMSHIM-HPLVGD 250
Query: 134 YKYGWQTHR 142
YG++ R
Sbjct: 251 PVYGYKKQR 259
>gi|419781535|ref|ZP_14307354.1| pseudouridine synthase, RluA family [Streptococcus oralis SK100]
gi|383184135|gb|EIC76662.1| pseudouridine synthase, RluA family [Streptococcus oralis SK100]
Length = 299
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Y+ L+L TGR HQ+RVH A +G P+ GD YG
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYG 248
>gi|417935378|ref|ZP_12578697.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
F0392]
gi|340769871|gb|EGR92389.1| pseudouridine synthase, RluA family [Streptococcus mitis bv. 2 str.
F0392]
Length = 299
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + + QF
Sbjct: 211 RFGDYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGYGQF 259
>gi|312622364|ref|YP_004023977.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202831|gb|ADQ46158.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 293
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 7 ASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPL 62
SH+ + +SGI+ + Y + + EKR + + Y A+V G G+I P+
Sbjct: 122 TSHIINRLDKDTSGIVVFAKNSYFHSIVSYEFEKRRVDKTYIAIVHGILTKKSGLIEKPI 181
Query: 63 GKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
+ D+G I A T Y+VI + ++ LKL P+TGR HQLRVH
Sbjct: 182 KRS--DDGIKREIH-------QDGSFAFTYYEVID-TFENFSVLKLKPITGRTHQLRVHL 231
Query: 123 AEVLGTPIVGDYKYG 137
+ + G PIVGD YG
Sbjct: 232 SSI-GHPIVGDCIYG 245
>gi|127513457|ref|YP_001094654.1| pseudouridine synthase [Shewanella loihica PV-4]
gi|126638752|gb|ABO24395.1| pseudouridine synthase [Shewanella loihica PV-4]
Length = 578
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ Y A V G + +G I+ PL +V +D+ + + +HA T Y ++
Sbjct: 452 RTVEKRYLARVAGEVQGEEGEITLPL-RVDLDDRPRQLVCFEH------GKHAHT-YWLV 503
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHR 142
K G T L L P TGR HQLRVHCA + LG PI+GD YG + +R
Sbjct: 504 KSRGEGTTLLSLFPKTGRTHQLRVHCAHQDGLGMPIIGDDLYGAKANR 551
>gi|374319064|ref|YP_005065562.1| Ribosomal large subunit pseudouridine synthase [Rickettsia slovaca
13-B]
gi|383750988|ref|YP_005426089.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
slovaca str. D-CWPP]
gi|360041612|gb|AEV91994.1| Ribosomal large subunit pseudouridine synthase [Rickettsia slovaca
13-B]
gi|379774002|gb|AFD19358.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
slovaca str. D-CWPP]
Length = 303
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDNHLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGQEIKLEAKLPF 296
>gi|350588629|ref|XP_003482691.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Sus scrofa]
Length = 376
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 45/212 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R + + YWA+ V P S GV+ P+ + V DNGK R+
Sbjct: 178 RQVAKKYWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSR 237
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N A AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 238 N-----AHLAVTQYQVLS-STLSSALLELQPVTGIKHQLRVHLSFGLDCPILGDHKYS-- 289
Query: 140 THRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 197
W + P LS ++ +P+ K H LHLH +++ LP +
Sbjct: 290 ---DWNRLAPQKLSVGVLKKLGLPQSKARHIP--------------LHLHARQLILPALQ 332
Query: 198 QAIQKVQLSSGCDVSKLETL-KLVAPLPSHMQ 228
+++ L + +L +L +PSH Q
Sbjct: 333 SRKEELNLVCKPPRYFVHSLRRLGLKMPSHDQ 364
>gi|350273318|ref|YP_004884631.1| ribosomal large subunit pseudouridine synthase [Rickettsia japonica
YH]
gi|348592531|dbj|BAK96492.1| ribosomal large subunit pseudouridine synthase [Rickettsia japonica
YH]
Length = 303
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H +
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANT 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGQEIKLEAKLPF 296
>gi|383312295|ref|YP_005365096.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378930955|gb|AFC69464.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 303
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 73/121 (60%), Gaps = 10/121 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SQGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L 152
+
Sbjct: 277 I 277
>gi|158320450|ref|YP_001512957.1| RluA family pseudouridine synthase [Alkaliphilus oremlandii OhILAs]
gi|158140649|gb|ABW18961.1| pseudouridine synthase, RluA family [Alkaliphilus oremlandii
OhILAs]
Length = 308
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y A+VVG R + + AP+G+ VD K V ND +HAVT ++V++
Sbjct: 169 RKYHAIVVGNIREKEAAVDAPIGRHPVDRLKR----AVMND----GKHAVTHFKVLE-VF 219
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
+T+++ TGR HQ+RVH + +G P+VGD YG ++
Sbjct: 220 RDFTYIEAKLETGRTHQIRVHLS-YIGNPLVGDPLYGAKS 258
>gi|113970739|ref|YP_734532.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|114047966|ref|YP_738516.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
gi|113885423|gb|ABI39475.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|113889408|gb|ABI43459.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
Length = 329
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G V+ PL K+ + +G +RI VN + + + TR+++++
Sbjct: 185 MQKDYLALVKGEWSAQDKVVKQPLLKLTLKSG--ERIVRVNGE----GKPSETRFKIVQ- 237
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
G T ++ SP+TGR HQ+RVHC + +G PI D KY QT
Sbjct: 238 RYQGCTLVQASPVTGRTHQIRVHC-QYMGHPIACDEKYSEQT 278
>gi|332880211|ref|ZP_08447892.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357045819|ref|ZP_09107451.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
gi|332681860|gb|EGJ54776.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355531342|gb|EHH00743.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
Length = 544
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVT 91
E R +++ Y AL+ GT +G I PL D + Q++S + AVT
Sbjct: 416 ETRHIKKRYIALLDGTVTDDEGFIRLPLCPNPNDRPR----------QMVSTAYGKAAVT 465
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHR 142
R++V+ S HG T + P TGR HQLRVH A E L TPIVGD YG + R
Sbjct: 466 RFEVLSRS-HGQTRVAFYPFTGRTHQLRVHAAHPEGLDTPIVGDNLYGRRASR 517
>gi|260910942|ref|ZP_05917583.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 472 str. F0295]
gi|260634933|gb|EEX52982.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 472 str. F0295]
Length = 537
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 12/114 (10%)
Query: 35 EKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
E +++ Y A++ G P +G IS PL +D + +V+ + + AVTR
Sbjct: 409 ENHEVKKRYVAVLDGLLPPERQQGEISLPLNSNYLDRPRQ----MVD---WLQGKPAVTR 461
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW 144
Y+VI G T + L PLTGR HQLRVHCA + L PI+GD YG + HR +
Sbjct: 462 YEVIGQE-EGRTIVALYPLTGRTHQLRVHCAHPDGLNLPILGDPLYGRKAHRMY 514
>gi|159902752|ref|YP_001550096.1| pseudouridylate synthase [Prochlorococcus marinus str. MIT 9211]
gi|159887928|gb|ABX08142.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9211]
Length = 327
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
CI V+ T E ++ + R+ R Y A+V G P+ KG I +G+ VD K
Sbjct: 157 CIVVAK---TQEALVNLQKQIQTRVASRIYLAIVHGVPKGDKGTIIGAIGRHPVDRKK-- 211
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
VV N+ A++A T ++ +K Y+ L TGR HQ+RVHCA G PI+GD
Sbjct: 212 -YAVVTNEM---ARYACTHWE-LKERLGDYSLLSFKLDTGRTHQIRVHCAH-FGHPILGD 265
Query: 134 YKY 136
Y
Sbjct: 266 QTY 268
>gi|322391774|ref|ZP_08065239.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
peroris ATCC 700780]
gi|321145254|gb|EFX40650.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
peroris ATCC 700780]
Length = 297
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR++V++
Sbjct: 162 RKYWAIVHGNIPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFRVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYTLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|127512523|ref|YP_001093720.1| RluA family pseudouridine synthase [Shewanella loihica PV-4]
gi|126637818|gb|ABO23461.1| ribosomal large subunit pseudouridine synthase C [Shewanella
loihica PV-4]
Length = 329
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G + VI+APL K+ + +G +RI VN + + + TR+++++
Sbjct: 185 MQKDYMALVRGEWQNHDKVINAPLLKLTLKSG--ERIVRVNQE----GKPSETRFKIMQ- 237
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 238 RYQGATLVQASPVTGRTHQIRVHC-QYAGHPIACDEKYSEQ 277
>gi|168182405|ref|ZP_02617069.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|237794814|ref|YP_002862366.1| RluA family pseudouridine synthase [Clostridium botulinum Ba4 str.
657]
gi|182674415|gb|EDT86376.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|229261378|gb|ACQ52411.1| pseudouridine synthase, RluA family [Clostridium botulinum Ba4 str.
657]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + +HAVT Y+VI+
Sbjct: 166 ISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECRLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|189485617|ref|YP_001956558.1| pseudouridylate synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287576|dbj|BAG14097.1| pseudouridylate synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 64/103 (62%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KR++++ Y+A V G ++G+I APLG+ + K+ ++ VN ++ + A+T ++
Sbjct: 154 QKRVVKKIYYAAVKGVIAENRGIIKAPLGR----SPKNRKLVSVNP---LAKKVAITEFK 206
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
VI+ YT LK+ +TGR HQ+R H + + P++GD +YG
Sbjct: 207 VIERK-DDYTLLKVRIITGRTHQIRSHM-KYINHPVIGDKQYG 247
>gi|148379448|ref|YP_001253989.1| pseudouridine synthase [Clostridium botulinum A str. ATCC 3502]
gi|153934249|ref|YP_001383827.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
ATCC 19397]
gi|153935171|ref|YP_001387377.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
Hall]
gi|387817752|ref|YP_005678097.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
gi|148288932|emb|CAL83019.1| putative ribosomal large subunit pseudouridine synthase
[Clostridium botulinum A str. ATCC 3502]
gi|152930293|gb|ABS35793.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
ATCC 19397]
gi|152931085|gb|ABS36584.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
Hall]
gi|322805794|emb|CBZ03359.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + +HAVT Y+VI+
Sbjct: 166 ISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIK---MAVVKD-----GRHAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECRLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|331005540|ref|ZP_08328915.1| tRNA pseudouridine synthase C [gamma proteobacterium IMCC1989]
gi|330420660|gb|EGG94951.1| tRNA pseudouridine synthase C [gamma proteobacterium IMCC1989]
Length = 237
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R+LQ+ YWA+V G +G+I P+ + K D+ + + AQ A+T Y+
Sbjct: 79 EQRLLQKTYWAIVRGYIN-KEGIIDHPIKPTA--DFKRDKQRIAQKE----AQEAITGYR 131
Query: 95 VIK----PSC------HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+ P C Y+ ++LSP TGRKHQLR H L PI+GD KYG H +
Sbjct: 132 RLGTLELPYCVDQFPISRYSLVELSPQTGRKHQLRKHMKH-LSHPIIGDPKYGKSKHNHF 190
Query: 145 KQFH 148
+ H
Sbjct: 191 FKEH 194
>gi|323486916|ref|ZP_08092232.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
gi|323399779|gb|EGA92161.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y+A+V G+ + +G I AP+G+ +DR + N + + + AVT Y+V++
Sbjct: 166 ITRKYYAVVFGSLKDDEGTIHAPIGR-----HPNDRKKMSINSK--NGKDAVTHYKVLE- 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
HGYT ++ TGR HQ+RVH A + G P++GD YG
Sbjct: 218 RFHGYTLVECRLETGRTHQIRVHMASI-GHPLLGDQVYG 255
>gi|392554983|ref|ZP_10302120.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas undina
NCIMB 2128]
Length = 555
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G G I PL V+D R V + + ++T +QV
Sbjct: 428 ERSVEKRYVALVAGNIAADSGSIELPL---VLDFDDKPRQMVC----YKTGKPSLTTWQV 480
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + T L+L P TGR HQLRVHCA LG TPIVGD YG ++ R
Sbjct: 481 LERK-NNTTRLQLYPKTGRTHQLRVHCAHHLGLNTPIVGDTHYGEKSDR 528
>gi|268315647|ref|YP_003289366.1| pseudouridine synthase [Rhodothermus marinus DSM 4252]
gi|262333181|gb|ACY46978.1| pseudouridine synthase [Rhodothermus marinus DSM 4252]
Length = 235
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 24/129 (18%)
Query: 18 SSGIITVERVM----YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-----GKVVVD 68
+SG++ R Y + E+R +++ Y ALV G +G I AP+ G++ VD
Sbjct: 56 ASGVLLFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPIRMYGSGRMGVD 115
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+ + + TRY+V++ Y+ ++ PLTGR+HQ+RVHC + G
Sbjct: 116 PER--------------GKPSETRYRVLEYLDEAYSLIEALPLTGRRHQIRVHCYHI-GH 160
Query: 129 PIVGDYKYG 137
PIVGD +YG
Sbjct: 161 PIVGDPRYG 169
>gi|323691964|ref|ZP_08106213.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|355628019|ref|ZP_09049548.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
gi|323503973|gb|EGB19786.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|354819987|gb|EHF04418.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y+A+V G+ + +G I AP+G+ +DR + N + + + AVT Y+V++
Sbjct: 166 ITRKYYAVVFGSLKDDEGTIHAPIGR-----HPNDRKKMSINSK--NGKDAVTHYKVLE- 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
HGYT ++ TGR HQ+RVH A + G P++GD YG
Sbjct: 218 RFHGYTLVECRLETGRTHQIRVHMASI-GHPLLGDQVYG 255
>gi|434386915|ref|YP_007097526.1| pseudouridine synthase, RluA family [Chamaesiphon minutus PCC 6605]
gi|428017905|gb|AFY93999.1| pseudouridine synthase, RluA family [Chamaesiphon minutus PCC 6605]
Length = 331
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R Y +V G P+ G I P+G+ VD K+ +V D+ + A+T +Q I+
Sbjct: 191 RREYLGVVYGAPKVDSGTIDLPIGRHPVDRQKN---AIVPLDR--GGRSAITHWQ-IEER 244
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G+T ++ TGR HQ+RVH A+ +G PIVGD YG
Sbjct: 245 LRGFTLIRFRLQTGRTHQIRVHAAQ-MGHPIVGDPVYG 281
>gi|337287215|ref|YP_004626688.1| RluA family pseudouridine synthase [Thermodesulfatator indicus DSM
15286]
gi|335360043|gb|AEH45724.1| pseudouridine synthase, RluA family [Thermodesulfatator indicus DSM
15286]
Length = 312
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 28 MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQ 87
M+KD R +++ Y ALV G PR S G I P+G+ V+ K + + +
Sbjct: 165 MFKD-----REIKKIYLALVHGVPRLSAGKIEKPIGRHPVNRQKM-------SVHAKTGR 212
Query: 88 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
A+T Y+V + L++ P TGR HQ+RVH A + G PIVGD YG
Sbjct: 213 EALTFYRV-RERFPKAALLEVEPKTGRTHQIRVHLASI-GHPIVGDELYG 260
>gi|393766637|ref|ZP_10355192.1| pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392727955|gb|EIZ85265.1| pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 224
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+V G P G I PL + +SD + A+T ++V+ G
Sbjct: 93 YWAVVEGGPDAETGRIDLPLAR------RSDDPRSWWMKADPAGDPALTHWRVLG-RAGG 145
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
TWL+L P+TGR HQLRVHCA G PI+GD YG
Sbjct: 146 RTWLELKPVTGRTHQLRVHCAAS-GWPILGDSIYG 179
>gi|422865589|ref|ZP_16912214.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1058]
gi|327489656|gb|EGF21448.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1058]
Length = 298
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ YT ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYTLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|399516219|ref|ZP_10757830.1| Ribosomal large subunit pseudouridine synthase D [Leuconostoc
pseudomesenteroides 4882]
gi|398648947|emb|CCJ65857.1| Ribosomal large subunit pseudouridine synthase D [Leuconostoc
pseudomesenteroides 4882]
Length = 312
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
QR Y ALV G + G ISAPL + VD K +T + A+T +QV+K
Sbjct: 165 QRIYIALVRGEFQEDTGTISAPLARHKVDR-KKQAVT-------EGGREAITHFQVLKRF 216
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT L++ TGR HQ+RVH + G PIVGD YG
Sbjct: 217 V-GYTLLQVRLETGRTHQIRVHMTYI-GHPIVGDPVYG 252
>gi|385260600|ref|ZP_10038744.1| pseudouridine synthase, RluA family [Streptococcus sp. SK140]
gi|385191150|gb|EIF38574.1| pseudouridine synthase, RluA family [Streptococcus sp. SK140]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YW +V G +GVI AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWTIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYTLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|238650483|ref|YP_002916335.1| hypothetical protein RPR_02200 [Rickettsia peacockii str. Rustic]
gi|238624581|gb|ACR47287.1| hypothetical protein RPR_02200 [Rickettsia peacockii str. Rustic]
Length = 303
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI + L F
Sbjct: 277 ICLSEKIFGQEIKLDAKLPF 296
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 12/122 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R R Y A+V G + ++G+I+AP+G+ D K + VV +++ A+T +Q
Sbjct: 167 KERTAGRKYVAIVHGNIKENQGIINAPIGRHPTDRKK---MAVV----FTNSKEAITTFQ 219
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSD 151
V++ YT ++ TGR HQ+RVH A +G P+VGD KYG R + H ++
Sbjct: 220 VLE-RFGDYTLVECRLFTGRTHQIRVHMA-YIGHPVVGDPKYGPGRQRFAIMGQALHAAE 277
Query: 152 LS 153
L+
Sbjct: 278 LT 279
>gi|315656560|ref|ZP_07909447.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315492515|gb|EFU82119.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 304
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 10 VYEKCIAVSSGIITVER--VMYKDNDNEKRI--LQRWYWALVVGTPRCSKGVISAPLGKV 65
+ + A +SG + V + + Y NE R +++ Y AL G + G I AP+G+
Sbjct: 132 IVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEKIYTALATGGVKPPVGTIDAPIGRA 191
Query: 66 VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
G+ ++ VV+ + AVT Y VI+ G T LK+ TGR HQ+RVH A +
Sbjct: 192 ---PGREFKMAVVSG-----GKPAVTHYDVIE-ELPGATLLKVQLETGRTHQIRVHLAAI 242
Query: 126 LGTPIVGDYKYG 137
G P+VGD +YG
Sbjct: 243 -GHPLVGDTEYG 253
>gi|315655527|ref|ZP_07908426.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii ATCC 51333]
gi|315490182|gb|EFU79808.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii ATCC 51333]
Length = 304
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 10 VYEKCIAVSSGIITVER--VMYKDNDNEKRI--LQRWYWALVVGTPRCSKGVISAPLGKV 65
+ + A +SG + V + + Y NE R +++ Y AL G + G I AP+G+
Sbjct: 132 IVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEKIYTALATGGVKPPVGTIDAPIGRA 191
Query: 66 VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
G+ ++ VV+ + AVT Y VI+ G T LK+ TGR HQ+RVH A +
Sbjct: 192 ---PGREFKMAVVSG-----GKPAVTHYDVIE-ELPGATLLKVQLETGRTHQIRVHLAAI 242
Query: 126 LGTPIVGDYKYG 137
G P+VGD +YG
Sbjct: 243 -GHPLVGDTEYG 253
>gi|350276205|ref|NP_001231886.1| RNA pseudouridylate synthase domain containing 4 [Sus scrofa]
Length = 376
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 45/212 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVV-----------------DNGKSDRITVVN 79
R + + YWA+ V P S GV+ P+ + V DNGK R+
Sbjct: 178 RQVAKKYWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSR 237
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N A AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 238 N-----AHLAVTQYQVLS-STLSSALLELQPVTGIKHQLRVHLSFGLECPILGDHKYS-- 289
Query: 140 THRKWKQFHPSDLSKDSNEE--IPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVS 197
W + P LS ++ +P+ K H LHLH +++ LP +
Sbjct: 290 ---DWNRLAPQKLSVGVLKKLGLPQSKARHIP--------------LHLHARQLILPALQ 332
Query: 198 QAIQKVQLSSGCDVSKLETL-KLVAPLPSHMQ 228
+++ L + +L +L +PSH Q
Sbjct: 333 SRKEELNLVCKPPRYFVHSLRRLGLKMPSHDQ 364
>gi|62751988|ref|NP_001015616.1| RNA pseudouridylate synthase domain-containing protein 4 [Bos
taurus]
gi|75057865|sp|Q5E9Z1.1|RUSD4_BOVIN RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|59857799|gb|AAX08734.1| hypothetical protein FLJ14494 [Bos taurus]
gi|59857921|gb|AAX08795.1| hypothetical protein FLJ14494 [Bos taurus]
Length = 377
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ +D+GK R+
Sbjct: 179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 N-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 291 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 334
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 335 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 365
>gi|419799995|ref|ZP_14325308.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
gi|385696494|gb|EIG26975.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +G+I AP+G+ D K +T + AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDR-KKQAVTA-------KGKTAVTRFQVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGQGQF 259
>gi|409993260|ref|ZP_11276408.1| RluA family pseudouridine synthase [Arthrospira platensis str.
Paraca]
gi|291568935|dbj|BAI91207.1| probable pseudouridine synthase [Arthrospira platensis NIES-39]
gi|409935884|gb|EKN77400.1| RluA family pseudouridine synthase [Arthrospira platensis str.
Paraca]
Length = 308
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y ++ G P+ + GVI P+G+ SDR + + + A+TR+Q
Sbjct: 163 QAKTARRQYLGIIYGVPKTTSGVIDQPIGR-----HHSDRKKMAIVPEHQGGRSAITRWQ 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V + YT ++ TGR HQ+RVH A + G PIVGD YG
Sbjct: 218 V-QERLGNYTLIEFELETGRTHQIRVHSASI-GHPIVGDRVYG 258
>gi|95767470|gb|ABF57296.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
Length = 373
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ +D+GK R+
Sbjct: 175 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSR 234
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 235 N-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-- 286
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 287 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 330
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 331 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 361
>gi|372266753|ref|ZP_09502801.1| 23S rRNA pseudouridylate synthase C [Alteromonas sp. S89]
Length = 309
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGT-PRCSKGVISAPLGKVVVDNGKS 72
+SG I V R +++ ++ + + Y AL VG PR K ++ APL K + +G
Sbjct: 143 TSGAILVARKRAVLLHVQSELRAGKMDKSYLALAVGKWPRAQK-LVEAPLRKNTLKSG-- 199
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+R+ VV+ + + + TR+QV + G T ++ P+TGR HQ+RVH A+ +G P+ G
Sbjct: 200 ERMVVVDGE----GKPSTTRFQV-EERLDGATLMRAEPVTGRTHQIRVH-AQFVGCPLAG 253
Query: 133 DYKY 136
D KY
Sbjct: 254 DAKY 257
>gi|417917067|ref|ZP_12560629.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
gi|342830716|gb|EGU65041.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +G+I AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGQGQF 259
>gi|322389731|ref|ZP_08063278.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
gi|321143570|gb|EFX39001.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +G+I AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGQGQF 259
>gi|337282172|ref|YP_004621643.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
gi|335369765|gb|AEH55715.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +G+I AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGQGQF 259
>gi|240139473|ref|YP_002963948.1| pseudouridine synthase [Methylobacterium extorquens AM1]
gi|240009445|gb|ACS40671.1| pseudouridine synthase [Methylobacterium extorquens AM1]
Length = 213
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPSCH 101
YWALV G P +G I PL K D R + D + ++T Y+V+ + C
Sbjct: 76 YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLGRSEC- 128
Query: 102 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 129 -LSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 162
>gi|404371419|ref|ZP_10976724.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
gi|226912453|gb|EEH97654.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIM-SAQHAVTRYQVIK 97
++R Y+ALV G +G + P+G+ K DR+ + IM + AVT Y V++
Sbjct: 167 IKREYYALVEGKFSKIEGTVDKPIGR-----NKKDRLKMA----IMEDGKRAVTHYNVLE 217
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
+G +K + TGR HQ+RVH A + G P+VGD Y +K+K
Sbjct: 218 QYNNGTALVKCTLETGRTHQIRVHMASI-GHPLVGDPLYNSNKKQKFK 264
>gi|114775485|ref|ZP_01451053.1| ribosomal large subunit pseudouridine synthase C [Mariprofundus
ferrooxydans PV-1]
gi|114553596|gb|EAU55977.1| ribosomal large subunit pseudouridine synthase C [Mariprofundus
ferrooxydans PV-1]
Length = 315
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +Q+ Y+AL+ G P G +S+ L K VV G+ VV++++ + +VT YQV
Sbjct: 169 ERDMQKTYFALIAGHPYAHAGRMSSNLAKGVVRGGER---MVVDSEE---GKASVTDYQV 222
Query: 96 -IKPSCHG--YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I+ HG Y + L+P +GR HQLRV G PI+GD KYG
Sbjct: 223 MIEYERHGFPYAMVALNPHSGRTHQLRVQLQHE-GHPILGDGKYG 266
>gi|95769474|gb|ABF57439.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
Length = 375
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ +D+GK R+
Sbjct: 177 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSR 236
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 237 N-----AQLAVTQYQVLS-SSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-- 288
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 289 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 332
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 333 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 363
>gi|375357457|ref|YP_005110229.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis 638R]
gi|423258566|ref|ZP_17239489.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|423264462|ref|ZP_17243465.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|423281687|ref|ZP_17260572.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
gi|301162138|emb|CBW21683.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis 638R]
gi|387776146|gb|EIK38246.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|392706728|gb|EIY99851.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|404582728|gb|EKA87419.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
Length = 539
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y AL+ G +GVI P+ +D + +VN + + A+TRY+
Sbjct: 411 ENRSIKKRYIALLDGILPEEEGVIDLPICPDYLDRPRQ----MVNEE---LGKTAITRYR 463
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
V+ +G T + PLTGR HQLRVH A LG PIVGD YG + R +
Sbjct: 464 VMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKAERLY 514
>gi|300869701|ref|YP_003784572.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli 95/1000]
gi|300687400|gb|ADK30071.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli 95/1000]
Length = 222
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + Y +N + R + + Y A+V G P+ KG I + K + K
Sbjct: 59 TSGILILAKDNNTKTYFENAFKNREINKVYHAIVEGVPKNIKGTIDIQIAKDTKNPNK-- 116
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI V +I A+T Y+V+K ++ L+L P+TGR HQ+RVH + LG PI+GD
Sbjct: 117 RIAVKKGGEI-----AITHYKVLK-KFKLHSLLELKPITGRTHQIRVHLS-YLGNPIIGD 169
>gi|60680595|ref|YP_210739.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis NCTC 9343]
gi|60492029|emb|CAH06791.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis NCTC 9343]
Length = 539
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y AL+ G +GVI P+ +D + +VN + + A+TRY+
Sbjct: 411 ENRSIKKRYIALLDGILPEEEGVIDLPICPDYLDRPRQ----MVNEE---LGKTAITRYR 463
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
V+ +G T + PLTGR HQLRVH A LG PIVGD YG + R +
Sbjct: 464 VMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKAERLY 514
>gi|312866736|ref|ZP_07726950.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
gi|311097817|gb|EFQ56047.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
Length = 296
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +G+I AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGQGQF 259
>gi|423268979|ref|ZP_17247951.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|423273460|ref|ZP_17252407.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
gi|392702288|gb|EIY95434.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|392707753|gb|EIZ00868.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
Length = 539
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y AL+ G +GVI P+ +D + +VN + + A+TRY+
Sbjct: 411 ENRSIKKRYIALLDGILPEEEGVIDLPICPDYLDRPRQ----MVNEE---LGKTAITRYR 463
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
V+ +G T + PLTGR HQLRVH A LG PIVGD YG + R +
Sbjct: 464 VMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKAERLY 514
>gi|387879746|ref|YP_006310049.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
gi|386793197|gb|AFJ26232.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
Length = 296
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +G+I AP+G+ D K Q ++A+ AVTR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGMIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDPAYGPKKTLKGQGQF 259
>gi|39995193|ref|NP_951144.1| 23S rRNA synthase [Geobacter sulfurreducens PCA]
gi|409910641|ref|YP_006889106.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
sulfurreducens KN400]
gi|39981955|gb|AAR33417.1| 23S rRNA synthase [Geobacter sulfurreducens PCA]
gi|298504197|gb|ADI82920.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
sulfurreducens KN400]
Length = 322
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G+PR KG I +G+ D K + +HAVT ++V
Sbjct: 170 VKRVYLALVYGSPREDKGRIEGAIGRHPTDRKKM-------SGAARHGKHAVTHWRV-AA 221
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G T L+L TGR HQ+RVH AE G P+VGD YG
Sbjct: 222 RFTGVTLLRLRLETGRTHQIRVHMAEA-GFPLVGDEVYG 259
>gi|404476000|ref|YP_006707431.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli B2904]
gi|431807229|ref|YP_007234127.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli P43/6/78]
gi|404437489|gb|AFR70683.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli B2904]
gi|430780588|gb|AGA65872.1| ribosomal large subunit pseudouridine synthase D [Brachyspira
pilosicoli P43/6/78]
Length = 222
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + Y +N + R + + Y A+V G P+ KG I + K + K
Sbjct: 59 TSGILILAKDNNTKTYFENAFKNREINKVYHAIVEGVPKNIKGTIDIQIAKDTKNPNK-- 116
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI V +I A+T Y+V+K ++ L+L P+TGR HQ+RVH + LG PI+GD
Sbjct: 117 RIAVKKGGEI-----AITHYKVLK-KFKLHSLLELKPITGRTHQIRVHLS-YLGNPIIGD 169
>gi|265762620|ref|ZP_06091188.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_16]
gi|336408646|ref|ZP_08589137.1| hypothetical protein HMPREF1018_01152 [Bacteroides sp. 2_1_56FAA]
gi|383117361|ref|ZP_09938107.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|423249084|ref|ZP_17230100.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
gi|423256606|ref|ZP_17237534.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|251947311|gb|EES87593.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|263255228|gb|EEZ26574.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_16]
gi|335935867|gb|EGM97815.1| hypothetical protein HMPREF1018_01152 [Bacteroides sp. 2_1_56FAA]
gi|392648605|gb|EIY42293.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|392656631|gb|EIY50269.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
Length = 539
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R +++ Y AL+ G +GVI P+ +D + +VN + + A+TRY+
Sbjct: 411 ENRSIKKRYIALLDGILPEEEGVIDLPICPDYLDRPRQ----MVNEE---LGKTAITRYR 463
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
V+ +G T + PLTGR HQLRVH A LG PIVGD YG + R +
Sbjct: 464 VMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKAERLY 514
>gi|383483135|ref|YP_005392049.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
montanensis str. OSU 85-930]
gi|378935489|gb|AFC73990.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
montanensis str. OSU 85-930]
Length = 303
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGGVRSNIEK---SKGSTPQITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDSNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGKEIKLEAKLPF 296
>gi|418059138|ref|ZP_12697095.1| pseudouridine synthase [Methylobacterium extorquens DSM 13060]
gi|373567333|gb|EHP93305.1| pseudouridine synthase [Methylobacterium extorquens DSM 13060]
Length = 239
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-KPSCH 101
YWALV G P +G I PL K D R + D + ++T Y+V+ + C
Sbjct: 102 YWALVEGGPEAMEGRIDLPLAKRSDDP----RSWWMKTDP--AGAPSLTLYRVLGRSEC- 154
Query: 102 GYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+WL+L P+TGR HQLRVHCA +G PI GD YG
Sbjct: 155 -LSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|315640856|ref|ZP_07895955.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
italicus DSM 15952]
gi|315483395|gb|EFU73892.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
italicus DSM 15952]
Length = 302
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV G KGVI AP+G+ VD VV+N + AVT +QV++
Sbjct: 167 RKYVALVHGVIPHDKGVIRAPIGRSTVDRKMQ---AVVDN-----GKDAVTHFQVLE-RY 217
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
YT ++L TGR HQ+RVH + +G P+VGD YG +
Sbjct: 218 EDYTLVELQLETGRTHQIRVHM-QYIGYPLVGDPVYGLK 255
>gi|341583575|ref|YP_004764066.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
heilongjiangensis 054]
gi|340807801|gb|AEK74389.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
heilongjiangensis 054]
Length = 303
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYG 259
>gi|301782173|ref|XP_002926501.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Ailuropoda melanoleuca]
gi|281338700|gb|EFB14284.1| hypothetical protein PANDA_016152 [Ailuropoda melanoleuca]
Length = 377
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 30/181 (16%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAP-LGKVVVDNGKSDRITV-----------VNNDQIM 84
R + + YWA+ V P GV+ P + K V + ++T+ V +
Sbjct: 179 RQVAKKYWAVTVRVPVPPAGVVDIPVIEKEVQGQQQHYKMTLSPSYRMEDGKMVRTRRDR 238
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+A AVT+YQV+ S ++L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 239 NAHTAVTQYQVLS-STLSSALVELQPITGVKHQLRVHLSFGLDCPILGDHKYS-----DW 292
Query: 145 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQ 204
+ P LS + +++ GL + LHLH +++ LP + +++
Sbjct: 293 NKLAPQKLSLGTLKKL--------GLQQAKARHIP----LHLHARQLILPALGSRKEELN 340
Query: 205 L 205
L
Sbjct: 341 L 341
>gi|160933118|ref|ZP_02080507.1| hypothetical protein CLOLEP_01961 [Clostridium leptum DSM 753]
gi|156868192|gb|EDO61564.1| pseudouridine synthase, RluA family [Clostridium leptum DSM 753]
Length = 306
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18 SSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V + + ++I +R Y A+V G + GV++AP+G+ +D K
Sbjct: 143 TSGLLMVAKNDFAHQGLARQIKEHSFRREYEAVVAGRMKQESGVVNAPIGRHPIDRKK-- 200
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ V + ++ AVT ++VI GYT ++L TGR HQ+RVH A LG P+ GD
Sbjct: 201 -MAVTEKN----SKEAVTYFRVIA-EYPGYTHIRLRLETGRTHQIRVHMA-YLGHPVAGD 253
Query: 134 YKYG 137
YG
Sbjct: 254 PAYG 257
>gi|291239041|ref|XP_002739435.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 467
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPL--GKVVVDNGKSDR--ITVVNNDQIMSAQ---- 87
K+++ + YW L VG P S+GV+ P+ G+V N R +V + I S+
Sbjct: 289 KKMVIKRYWVLTVGVPEPSEGVVDIPMEEGEVAGKNRMLLRPDYGLVYKNLIKSSSGKGA 348
Query: 88 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK-Q 146
A+T ++V+ S ++L P TG KHQ+R H A LG PI+GD+KY H K Q
Sbjct: 349 TALTNFKVLA-SEGNCALVELQPETGIKHQIRCHLASGLGCPILGDHKYSH--HDKLAPQ 405
Query: 147 FHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLP 194
P D+ + N K +T+ +HLH K++ +P
Sbjct: 406 KLPGDMLQRLNIRQAKVRTV----------------PMHLHAKQLIIP 437
>gi|298346986|ref|YP_003719673.1| putative pseudouridylate synthase [Mobiluncus curtisii ATCC 43063]
gi|298237047|gb|ADI68179.1| possible pseudouridylate synthase [Mobiluncus curtisii ATCC 43063]
Length = 304
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 10 VYEKCIAVSSGIITVER--VMYKDNDNEKRI--LQRWYWALVVGTPRCSKGVISAPLGKV 65
+ + A +SG + V + + Y NE R +++ Y AL G + G I AP+G+
Sbjct: 132 IVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEKIYTALATGKVKPPVGTIDAPIGRA 191
Query: 66 VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
G+ ++ VV+ + AVT Y +I+ G T LK+ TGR HQ+RVH A +
Sbjct: 192 ---PGREFKMAVVSG-----GKPAVTHYDIIE-ELPGATLLKVQLETGRTHQIRVHLAAI 242
Query: 126 LGTPIVGDYKYG 137
G P+VGD +YG
Sbjct: 243 -GHPLVGDTEYG 253
>gi|218678880|ref|ZP_03526777.1| pseudouridine synthase, RluA family protein [Rhizobium etli CIAT
894]
Length = 231
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G I APLG+ D + V A A+T Y+VI
Sbjct: 71 LERAYQAVVWGRPRALTGTIDAPLGRATGDRTRR----AVKRPDSHDADEAITHYEVIER 126
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
KP L L TGR HQ+RVH A + G P++GD YG K + P D+
Sbjct: 127 FQEKPDATALASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYGAGFKTKANRL-PEDI 184
Query: 153 SKDSN 157
K N
Sbjct: 185 RKVVN 189
>gi|345885401|ref|ZP_08836778.1| hypothetical protein HMPREF0666_02954 [Prevotella sp. C561]
gi|345045325|gb|EGW49257.1| hypothetical protein HMPREF0666_02954 [Prevotella sp. C561]
Length = 571
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 18/120 (15%)
Query: 36 KRILQRWYWAL----VVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
+R +++ Y AL V+ ++G I PL D+ R+ N + A+T
Sbjct: 436 RRTVKKKYVALLPLSVLEKQLPAEGRIDIPLSPDP-DDRPRQRVDRTN------GKPAIT 488
Query: 92 RYQVIKPSCHGYTWLK-----LSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW 144
Y++I + +G LK L PLTGR HQLRVHCA + LGTPI+GD YG + R W
Sbjct: 489 EYRLIGKTTYGKETLKVVKIELYPLTGRTHQLRVHCAHPDGLGTPIIGDNLYGQRAERLW 548
>gi|430750755|ref|YP_007213663.1| RluA family pseudouridine synthase [Thermobacillus composti KWC4]
gi|430734720|gb|AGA58665.1| pseudouridine synthase, RluA family [Thermobacillus composti KWC4]
Length = 326
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 27 VMYKDND----------NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT 76
V+Y ND EKRI +R Y A+V G PR G I AP+GK D G+S R
Sbjct: 153 VLYAKNDLAQLRLDEAMREKRI-ERRYLAIVHGAPRPRAGTIDAPIGK---DRGRSPRRR 208
Query: 77 VVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
V AVT Y+ +K +++ TGR HQ+RVH + + G P++GD Y
Sbjct: 209 VQPG-----GDRAVTHYETVK-EAGDLALVRVRLETGRTHQIRVHFSHI-GHPLLGDALY 261
Query: 137 G 137
G
Sbjct: 262 G 262
>gi|330718578|ref|ZP_08313178.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc fallax KCTC
3537]
Length = 258
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
QR Y+ALV G + + G ++AP+ + +D K ++ + AVT ++V++
Sbjct: 118 QRIYYALVRGEFKENSGTVNAPIARHKIDRKKQAIVS--------DGKPAVTHFEVVQRY 169
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT LK+ TGR HQ+RVH + G PIVGD YG
Sbjct: 170 V-GYTLLKVRLETGRTHQIRVHMTYI-GHPIVGDPVYG 205
>gi|152996325|ref|YP_001341160.1| RluA family pseudouridine synthase [Marinomonas sp. MWYL1]
gi|150837249|gb|ABR71225.1| pseudouridine synthase, RluA family [Marinomonas sp. MWYL1]
Length = 323
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 13/124 (10%)
Query: 18 SSGIITV--ERVMYKD---NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG+I V +R + K+ EK +Q+ Y ALV G+ K ++APL K + +G
Sbjct: 152 TSGLIMVAKKRAVLKELHTALREKEGVQKTYLALVYGSWPKRKLQVNAPLLKNELQSG-- 209
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+R+ V+ D + ++TR+++++ GY+ ++ P+TGR HQ+RVH + G PIVG
Sbjct: 210 ERVVRVHTD----GKESLTRFKLVR-QFEGYSLVECEPVTGRTHQIRVHT-QYAGYPIVG 263
Query: 133 DYKY 136
D KY
Sbjct: 264 DEKY 267
>gi|67459415|ref|YP_247039.1| ribosomal large subunit pseudouridine synthase [Rickettsia felis
URRWXCal2]
gi|75536169|sp|Q4UKQ3.1|RLUC_RICFE RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|67004948|gb|AAY61874.1| Ribosomal large subunit pseudouridine synthase [Rickettsia felis
URRWXCal2]
Length = 305
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT + ++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIYSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
++K + ++ +P+TGR HQLR+H A++LG PIVGD KYG + + K+ H ++
Sbjct: 218 LLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPIVGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGKEINLEAKLPF 296
>gi|332522697|ref|ZP_08398949.1| pseudouridine synthase, RluA family [Streptococcus porcinus str.
Jelinkova 176]
gi|332313961|gb|EGJ26946.1| pseudouridine synthase, RluA family [Streptococcus porcinus str.
Jelinkova 176]
Length = 299
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 27 VMYKDNDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
+M ND ++L R Y A+V G +G+I AP+G+ D K +TV
Sbjct: 139 LMVAKNDKAHQVLAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDR-KKQSVTV 197
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
D AVTR+ V++ YT L+LS TGR HQ+RVH A + G P+ GD YG
Sbjct: 198 KGKD-------AVTRFTVLE-RFGDYTLLELSLETGRTHQIRVHMAYI-GHPVAGDPLYG 248
Query: 138 -WQTHRKWKQF 147
+T + QF
Sbjct: 249 PRKTLKGAGQF 259
>gi|121601705|ref|YP_988611.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760423|ref|ZP_16197240.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
gi|120613882|gb|ABM44483.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411175707|gb|EKS45732.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
Length = 336
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 38 ILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
+L R Y AL+ G+P + GVI+A LG+ D K V+++ I A+HAVT + VI+
Sbjct: 170 VLDRRYHALIWGSPNRNIGVITASLGRARYDRTKQ---AVIHSHNIY-ARHAVTHFSVIE 225
Query: 98 P--SCHG----YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
+C + L+ TGR HQ+RVH A + G P+VGD YG K +F
Sbjct: 226 KYQTCADKIPFASLLECRLETGRTHQIRVHMAHI-GHPLVGDTVYGNAFKTKSNRF 280
>gi|318040686|ref|ZP_07972642.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp.
CB0101]
Length = 404
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+KRI R Y A+V G P G I +G+ D K VV++D S +HA T +
Sbjct: 170 QKRIASREYLAVVHGVPAAEHGTIVGAIGRHPADRKK---YAVVHDD---SGRHACTHWT 223
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+++ Y+ ++ TGR HQ+RVHCA + G PIVGD Y
Sbjct: 224 LVE-RLGDYSLMRFKLDTGRTHQIRVHCAHI-GHPIVGDPVY 263
>gi|309778048|ref|ZP_07672988.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914185|gb|EFP59985.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
Length = 304
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + + R Y+ALV G + G I AP+G+ V D K +T N ++ A T +Q
Sbjct: 161 QSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDRQKM-AVTSTN------SKDARTHFQ 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
VI+ YT ++ TGR HQ+RVH + +G P+VGD KY ++
Sbjct: 214 VIE-RFENYTLVECRLETGRTHQIRVHM-QYIGHPVVGDEKYSYR 256
>gi|422882191|ref|ZP_16928647.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK355]
gi|332360785|gb|EGJ38592.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK355]
Length = 298
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ A+TR+QV++
Sbjct: 164 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPALTRFQVLE- 212
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 RFGDYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 261
>gi|304389307|ref|ZP_07371272.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|304327425|gb|EFL94658.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
Length = 304
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 10 VYEKCIAVSSGIITVER--VMYKDNDNEKRI--LQRWYWALVVGTPRCSKGVISAPLGKV 65
+ + A +SG + V + + Y NE R +++ Y AL G + G I AP+G+
Sbjct: 132 IVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEKIYTALATGKVKPPVGTIDAPIGRA 191
Query: 66 VVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
G+ ++ VV+ + AVT Y +I+ G T LK+ TGR HQ+RVH A +
Sbjct: 192 ---PGREFKMAVVSG-----GKPAVTHYDIIE-ELPGATLLKVQLETGRTHQIRVHLAAI 242
Query: 126 LGTPIVGDYKYG 137
G P+VGD +YG
Sbjct: 243 -GHPLVGDTEYG 253
>gi|365904068|ref|ZP_09441827.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 297
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y A+V G + KG+I+APLG+ +N K I + + AVT ++VI+
Sbjct: 164 REYVAIVHGNFKERKGIINAPLGRAK-NNRKKQAI-------VDDGRKAVTHFEVIE-QF 214
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GY+ +KL TGR HQ+RVH + +G P+ GD YG
Sbjct: 215 EGYSLVKLKLETGRTHQIRVHM-QYIGHPVAGDPLYG 250
>gi|299537608|ref|ZP_07050901.1| putative RNA pseudouridine synthase yhcT [Lysinibacillus fusiformis
ZC1]
gi|298726977|gb|EFI67559.1| putative RNA pseudouridine synthase yhcT [Lysinibacillus fusiformis
ZC1]
Length = 279
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E++ + R Y A V G R S G I+ P+GK D + R V + QHAVT Y+
Sbjct: 154 EEKTIIRTYAAEVQGNLRTSSGTIAEPIGK---DRHHATRRVVSK-----TGQHAVTHYE 205
Query: 95 VI---KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ K SC + L+ TGR HQ+RVH A +G PI+GD YG
Sbjct: 206 VVARYKNSCVVHLILE----TGRTHQIRVHLA-YIGHPIIGDTMYG 246
>gi|357041028|ref|ZP_09102810.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
gi|355355887|gb|EHG03690.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
Length = 312
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G GV+ AP+G+ + ++ V N + + AVT Y+V+
Sbjct: 167 VRRGYLALVHGVLTSDLGVVDAPIGR---HPRERQKMAVTNRN----GKAAVTHYRVLNR 219
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
+ + YT L+L TGR HQ+RVH A + G P+VGD KYG ++H QF
Sbjct: 220 AGN-YTLLQLRLETGRTHQIRVHMAYI-GYPLVGDTKYGPNKSHLLDGQF 267
>gi|332638853|ref|ZP_08417716.1| pseudouridine synthase [Weissella cibaria KACC 11862]
Length = 304
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y+ALV G ++G I APLG+ D K + + AVT ++V+K
Sbjct: 165 RQYYALVHGEFVENEGTIKAPLGRSSADRKKQAVVA--------GGRDAVTHFKVVKRFV 216
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT L+++ TGR HQ+RVH A + G P+ GD YG
Sbjct: 217 -GYTLLQVTLETGRTHQIRVHMAYI-GHPVAGDPLYG 251
>gi|197336758|ref|YP_002158083.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
MJ11]
gi|197314010|gb|ACH63459.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
MJ11]
Length = 568
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y AL+ G G I+ PL + D R V + S + A T YQV
Sbjct: 441 ERTVEKRYTALLEGNIETDNGTINLPLTGDMEDRP---RQMVCHK----SGRKAETHYQV 493
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
I T + L P TGR HQLRVHCA G TPIVGD YG++ +R
Sbjct: 494 IAQEG-KRTKVHLYPHTGRTHQLRVHCAHQAGLNTPIVGDDLYGFKANR 541
>gi|229586508|ref|YP_002845009.1| Ribosomal large subunit pseudouridine synthase [Rickettsia africae
ESF-5]
gi|228021558|gb|ACP53266.1| Ribosomal large subunit pseudouridine synthase [Rickettsia africae
ESF-5]
Length = 303
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 73/121 (60%), Gaps = 10/121 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTLKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
V+K + ++ +P+TGR HQLR+H A++LG PI+GD KYG + + K+ H ++
Sbjct: 218 VLKSLDNNLFLIEFTPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L 152
+
Sbjct: 277 I 277
>gi|168186171|ref|ZP_02620806.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
gi|169295643|gb|EDS77776.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
Length = 304
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 14/106 (13%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRI--TVVNNDQIMSAQHAVTRYQVI 96
++R Y ALV G + +G+I APLG+ DRI VV N + AVT Y V+
Sbjct: 166 MKREYIALVEGIIKNDEGIIDAPLGR-----NPKDRIKRAVVRN-----GKSAVTHYNVL 215
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+ + T +K TGR HQ+RVH A + P+VGD YG++ R
Sbjct: 216 R-RFNKNTLVKCILETGRTHQIRVHMAHI-NHPLVGDPMYGFRKQR 259
>gi|261212690|ref|ZP_05926974.1| pseudouridylate synthase LSU rRNA-specific [Vibrio sp. RC341]
gi|260837755|gb|EEX64432.1| pseudouridylate synthase LSU rRNA-specific [Vibrio sp. RC341]
Length = 396
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +Q+ Y AL+ GT +G I PL + D + + + A+T ++VI
Sbjct: 270 RAVQKRYVALLEGTLDADRGEIQLPLCGDLDDRPRQKVC-------LQQGKPALTHWEVI 322
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
+ G T + L P TGR HQLRVHCA LG PIVGD YG Q R
Sbjct: 323 RIE-QGRTRVYLYPHTGRTHQLRVHCAHQLGLDCPIVGDDLYGQQAQR 369
>gi|297690649|ref|XP_002822725.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Pongo abelii]
Length = 377
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 43 YWALVVGTPRCSKGVISAPLGK-----------------VVVDNGKSDRITVVNNDQIMS 85
YWA+ V P S GV+ P+ + +D+GK ++ N Q+
Sbjct: 185 YWAITVRVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQV-- 242
Query: 86 AQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
AVT+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY W
Sbjct: 243 ---AVTQYQVLS-STLSSALLELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 293
Query: 146 QFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQL 205
+ P LS + +++ GL+ + LHLH +++ LP + +++ L
Sbjct: 294 RLAPQKLSVGTLKKL--------GLEQSKARYIP----LHLHARQLILPALGSGKEELNL 341
>gi|428776662|ref|YP_007168449.1| ribosomal large subunit pseudouridine synthase D [Halothece sp. PCC
7418]
gi|428690941|gb|AFZ44235.1| ribosomal large subunit pseudouridine synthase D [Halothece sp. PCC
7418]
Length = 309
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 18 SSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
++G I V + + +K+I +R Y L+ G P+ +G+I P+G+ VD K
Sbjct: 141 TTGAIVVAKNDFAHQHLQKQIQVKTAKREYLGLIYGVPKGVEGIIDRPIGRHRVDRKKMA 200
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ V + A+T +Q ++ Y+ L TGR HQ+RVHCA +G PIVGD
Sbjct: 201 VVAVEKGGRT-----AITHWQ-LEERLGNYSLLAFQLETGRTHQIRVHCA-AMGHPIVGD 253
Query: 134 YKY 136
Y
Sbjct: 254 PMY 256
>gi|424738672|ref|ZP_18167103.1| putative RNA pseudouridine synthase yhcT [Lysinibacillus fusiformis
ZB2]
gi|422947379|gb|EKU41775.1| putative RNA pseudouridine synthase yhcT [Lysinibacillus fusiformis
ZB2]
Length = 279
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E++ + R Y A V G R S G I+ P+GK D + R V + QHAVT Y+
Sbjct: 154 EEKTITRTYAAEVQGNLRTSLGTIAEPIGK---DRHHATRRVVSK-----TGQHAVTHYE 205
Query: 95 VI---KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ K SC + L+ TGR HQ+RVH A +G PI+GD YG
Sbjct: 206 VVARYKNSCVVHLILE----TGRTHQIRVHLA-YIGHPIIGDTMYG 246
>gi|424885737|ref|ZP_18309348.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393177499|gb|EJC77540.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 341
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G + APLG+ D + V A A+T Y+VI+
Sbjct: 181 LERAYQAVVWGRPRSLTGTVDAPLGRATGDRTRR----AVKRPDSHDADEAITHYEVIER 236
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
L+ L TGR HQ+RVH A + G P++GD YG K + P D+
Sbjct: 237 FQENPDATALASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYGAGFKTKANRL-PEDI 294
Query: 153 SKDSN 157
K N
Sbjct: 295 RKVVN 299
>gi|323351668|ref|ZP_08087322.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis VMC66]
gi|322122154|gb|EFX93880.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis VMC66]
Length = 298
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGNYSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|336113522|ref|YP_004568289.1| RluA family pseudouridine synthase [Bacillus coagulans 2-6]
gi|335366952|gb|AEH52903.1| pseudouridine synthase, RluA family [Bacillus coagulans 2-6]
Length = 290
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 6 TASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAP 61
+A HV + +SG++ V + Y + +K + R Y AL G G I AP
Sbjct: 126 SAIHVVTRLDRNTSGLVLVAKNRYIHHLCSLMQQKHEIFRTYEALAEGVFTEKSGTIEAP 185
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 121
+G+ +++ + Q A TRY+V++ Y ++L TGR HQ+RVH
Sbjct: 186 IGR--------KETSIIEREVRDGGQFARTRYEVVR-QFPAYAHVRLRLDTGRTHQIRVH 236
Query: 122 CAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDLS 153
+ + G P++GD YG T R +Q H S+LS
Sbjct: 237 LSYI-GHPLLGDGLYGGNTSRFTRQALHCSELS 268
>gi|190893167|ref|YP_001979709.1| RNA-pseudouridylate synthase, ribosomal large subunit D [Rhizobium
etli CIAT 652]
gi|190698446|gb|ACE92531.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli CIAT 652]
Length = 354
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G + APLG+ D + V A A+T Y+VI+
Sbjct: 194 LERAYRAIVWGRPRSLTGTVDAPLGRATGDRTRR----AVKRPDSQDADEAITHYEVIER 249
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
L+ L TGR HQ+RVH A + G P++GD YG R P D+
Sbjct: 250 FHETPDATALASLVECRLETGRTHQIRVHMAHI-GHPLLGDTVYG-AGFRTKANLLPEDI 307
Query: 153 SKDSN 157
K N
Sbjct: 308 RKVVN 312
>gi|345301952|ref|YP_004823854.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
gi|345111185|gb|AEN72017.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
Length = 237
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 24/129 (18%)
Query: 18 SSGIITVERVM----YKDNDNEKRILQRWYWALVVGTPRCSKGVISAPL-----GKVVVD 68
+SG++ R Y + E+R +++ Y ALV G +G I AP+ G++ VD
Sbjct: 58 ASGVLLFARNAEAHRYMNTRFERRQVRKVYRALVHGRIEPGQGQIQAPIRMYGSGRMGVD 117
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
+ + A TRY+V++ + ++ PLTGR+HQ+RVHC V G
Sbjct: 118 PER--------------GKPAETRYRVLEYLDEACSLIEALPLTGRRHQIRVHCYHV-GH 162
Query: 129 PIVGDYKYG 137
PIVGD +YG
Sbjct: 163 PIVGDPRYG 171
>gi|384250084|gb|EIE23564.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 508
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 57/126 (45%), Gaps = 31/126 (24%)
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTG----------------------RKHQLRVHC 122
+ Q A+T+Y+V+ S G+ WL L P+TG RKHQLR HC
Sbjct: 299 AGQRALTKYEVLGRSAEGFAWLALQPVTGMLLADAPGVCRCCSVQSPDTGRRKHQLRKHC 358
Query: 123 AEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQP 182
AE LG P+VGD +YG R Q L KD+ P++ LD +L
Sbjct: 359 AE-LGAPVVGDGRYG--RLRSPAQLRLRQLLKDA--PAPEQDADEAELD----RLLRCDS 409
Query: 183 RLHLHC 188
L LHC
Sbjct: 410 HLLLHC 415
>gi|407773645|ref|ZP_11120945.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407283091|gb|EKF08632.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 267
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
EK+I + YWA+V G G I AP+GK+ N +S +V+ D Q + T Y
Sbjct: 92 TEKKI-GKSYWAVVRGAMEDDHGFIDAPIGKI---NDESGWTMLVHED----GQPSKTEY 143
Query: 94 QVI----KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+ TWL+L P TGR HQLRVH V G P++GD YG
Sbjct: 144 TVLGRGKDADGKDITWLELVPHTGRTHQLRVHLDHV-GHPVIGDPFYG 190
>gi|410611272|ref|ZP_11322371.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
gi|410169123|dbj|GAC36260.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
Length = 317
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + Y ALV G ++ + APL K + +G +R+ +VN + + + TRY+++
Sbjct: 170 RKVDKRYQALVAGEWPANRFKVKAPLLKNTLKSG--ERVVLVNEE----GKPSETRYRIL 223
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ H T ++ SP+TGR HQ+RVHC G PI D +YG
Sbjct: 224 ESFNHA-TLVEASPITGRTHQIRVHCLHA-GHPIAADNRYG 262
>gi|335039113|ref|ZP_08532297.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181001|gb|EGL83582.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 299
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 18 SSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I + + + D + L R Y+A V G G I AP+G ++ G
Sbjct: 143 TSGLILIAKHSFVHQQLDVSRQHHGLTRRYYAWVHGVVEKDNGEIVAPIG---LEEG--- 196
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+++ Q A TR++VI+ YTWL+L+ TGR HQ+R+HC +G P++GD
Sbjct: 197 --SIIKRRVRADGQPARTRFRVIRRYA-DYTWLELTLDTGRTHQIRIHCQH-MGHPLLGD 252
Query: 134 YKYGWQTHRKWKQ 146
YG H +Q
Sbjct: 253 DLYGGSRHLIQRQ 265
>gi|322385620|ref|ZP_08059264.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
cristatus ATCC 51100]
gi|417922861|ref|ZP_12566347.1| pseudouridine synthase, RluA family [Streptococcus cristatus ATCC
51100]
gi|321270358|gb|EFX53274.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
cristatus ATCC 51100]
gi|342832009|gb|EGU66312.1| pseudouridine synthase, RluA family [Streptococcus cristatus ATCC
51100]
Length = 300
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ A+TR+QV++
Sbjct: 164 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPALTRFQVLE- 212
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 RFGDYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 261
>gi|383785597|ref|YP_005470167.1| ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum ferrooxidans C2-3]
gi|383084510|dbj|BAM08037.1| putative ribosomal large subunit pseudouridine synthase, RluA
family [Leptospirillum ferrooxidans C2-3]
Length = 356
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + + + N+ RI+ + Y ALV G P+ +G I APLG+ D
Sbjct: 184 TSGVMVIGKTEHAVNNLMVQFRDRIVSKRYLALVSGIPKKRRGEIDAPLGRSSHDR---- 239
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ V D + + TRY+VI + ++ LTGR HQ+RVH + G P++GD
Sbjct: 240 KMFAVRED----GKQSTTRYRVITSYRENCALVDITLLTGRTHQIRVHFKHI-GHPLLGD 294
Query: 134 YKYGWQT 140
Y +
Sbjct: 295 KVYAGKN 301
>gi|313890534|ref|ZP_07824162.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
SPIN 20026]
gi|416850955|ref|ZP_11908296.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
LQ 940-04]
gi|313121051|gb|EFR44162.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740634|gb|EHI65857.1| pseudouridine synthase, RluA family [Streptococcus pseudoporcinus
LQ 940-04]
Length = 299
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y A+V G +G+I AP+G+ D K +TV D AVTR+ V++
Sbjct: 162 RNYLAIVHGNLPNDRGMIEAPIGRSEKDR-KKQSVTVKGKD-------AVTRFTVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT L+LS TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLLELSLETGRTHQIRVHMA-YIGHPVAGDPLYGPRKTLKGNGQF 259
>gi|392961235|ref|ZP_10326697.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421055225|ref|ZP_15518189.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421059542|ref|ZP_15522126.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421063637|ref|ZP_15525593.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421072105|ref|ZP_15533218.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392440328|gb|EIW18016.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446693|gb|EIW23978.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392454161|gb|EIW31006.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|392458803|gb|EIW35293.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392462495|gb|EIW38568.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
Length = 294
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
Query: 18 SSGIITVER---VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
+SG++ + + V + + N + + R Y AL G + S+G I AP+ + D
Sbjct: 133 TSGLVLIAKYPHVQHLLSVNGAKNINRQYIALTTGIIKPSEGTIDAPIAR------HPDS 186
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
I D QHA T YQV+KP + ++L+ LTGR HQ+RVH + LG PI+GD
Sbjct: 187 IIQRIIDP--KGQHATTCYQVLKP-LKNASIVQLTLLTGRTHQIRVHLSH-LGHPIIGDD 242
Query: 135 KYG 137
YG
Sbjct: 243 LYG 245
>gi|354594975|ref|ZP_09013012.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
gi|353671814|gb|EHD13516.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
Length = 222
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
EK+ + + YWA+V G P + G I+APL KV D S + Q Q A T+++
Sbjct: 86 EKKQVTKIYWAIVKGKPSENSGHINAPLLKVTKDKQWSMQ-------QDPKGQAASTKWK 138
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++ S + L+L LTGR HQ R HCA +LG PI+GD Y
Sbjct: 139 LLG-SNGDISCLELQLLTGRTHQARAHCA-ILGHPIIGDTIYN 179
>gi|281421451|ref|ZP_06252450.1| ribosomal large subunit pseudouridine synthase A [Prevotella copri
DSM 18205]
gi|281404523|gb|EFB35203.1| ribosomal large subunit pseudouridine synthase A [Prevotella copri
DSM 18205]
Length = 556
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 24/138 (17%)
Query: 17 VSSGIITVERVMYKDNDNEKRIL----QRWYWALVVGTPRCS-----------KGVISAP 61
+SG++ + + + + +K L Q+ Y A+V G + S +G IS P
Sbjct: 393 ATSGLMIIAKTEFAYHRLQKEFLNHRVQKKYVAIVCGKDKESCNRILKEAEGGRGYISLP 452
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 121
L +D + +VN +Q + A+T Y+V++ + L L P TGR HQLRVH
Sbjct: 453 LIADFLDRPRQ----MVNREQ---GKEAITEYEVLERIDDTHLRLALYPKTGRTHQLRVH 505
Query: 122 CA--EVLGTPIVGDYKYG 137
CA E L PI+GD YG
Sbjct: 506 CAHQEGLNAPIIGDPLYG 523
>gi|402703865|ref|ZP_10851844.1| ribosomal large subunit pseudouridine synthase [Rickettsia
helvetica C9P9]
Length = 303
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
++K + ++ P+TGR HQLR+H A++LG PI+GD KYG + + K+ H ++
Sbjct: 218 LLKSLENNLFLIEFMPVTGRMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLSEKIFGKEIKLEAKLPF 296
>gi|390630849|ref|ZP_10258823.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
gi|390483904|emb|CCF31171.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
Length = 305
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y+ALV G ++G I APLG+ D K + + AVT ++V+K
Sbjct: 165 RQYYALVHGEFIENEGTIKAPLGRSSADRKKQAVVA--------GGRDAVTHFKVVKRFV 216
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT L+++ TGR HQ+RVH A +G P+ GD YG
Sbjct: 217 -GYTLLQVTLETGRTHQIRVHMA-YIGHPVAGDPLYG 251
>gi|258515575|ref|YP_003191797.1| RluA family pseudouridine synthase [Desulfotomaculum acetoxidans
DSM 771]
gi|257779280|gb|ACV63174.1| pseudouridine synthase, RluA family [Desulfotomaculum acetoxidans
DSM 771]
Length = 305
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
EKR++ R Y ALV G + G + AP+G+ D ++ V + + ++ AVT ++
Sbjct: 161 EKRLVNRRYLALVHGNLKQDAGTVDAPIGR---DACSRQKMAVTDRN----SRSAVTHFK 213
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V+K YT L+L TGR HQ+RVH + +G +VGD KYG
Sbjct: 214 VLKRFGR-YTLLELKLETGRTHQIRVHM-KYIGYQVVGDPKYG 254
>gi|18310832|ref|NP_562766.1| hypothetical protein CPE1850 [Clostridium perfringens str. 13]
gi|110801362|ref|YP_696533.1| RluA family pseudouridine synthase [Clostridium perfringens ATCC
13124]
gi|168206096|ref|ZP_02632101.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|168210787|ref|ZP_02636412.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|422346519|ref|ZP_16427433.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|422874769|ref|ZP_16921254.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
gi|18145514|dbj|BAB81556.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110676009|gb|ABG84996.1| pseudouridine synthase, RluA family [Clostridium perfringens ATCC
13124]
gi|170662443|gb|EDT15126.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170711120|gb|EDT23302.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|373226064|gb|EHP48391.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|380304410|gb|EIA16699.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
Length = 306
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 18 SSGIITVERVMYKDNDNEKRI-------LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 70
+SGI+ V + DN ++K ++R Y+A+V G + G I APLG+
Sbjct: 143 TSGILVVAK---NDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR-----H 194
Query: 71 KSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
DR+ + + AVT Y+V+K SC + +K + TGR HQ+RVH A +G
Sbjct: 195 HRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVKCTLETGRTHQIRVHMA-FIGH 247
Query: 129 PIVGDYKYGWQTHRKWKQ 146
P++GD YG + +K Q
Sbjct: 248 PLLGDTVYGLKKQKKLSQ 265
>gi|46202662|ref|ZP_00208608.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 227
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
K + + YWA+VVG PR +GVI L K G R+ V N +VT++++
Sbjct: 84 KGLADKTYWAVVVGKPREDQGVIDYALKKREKKFGW--RMEVDRN-----GLASVTQWRL 136
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
+ +WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 137 LGTDGR-LSWLECRPLTGRTHQIRAHCAAI-GHPLVGDAIYGRGT 179
>gi|357238999|ref|ZP_09126335.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
gi|356752721|gb|EHI69846.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
Length = 299
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y A+V G +GVI AP+G+ D K +TV + A+TR+ V++
Sbjct: 162 RKYLAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTV-------KGKEALTRFTVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF-HPSDLS---KD 155
YT L+L TGR HQ+RVH A +G PI GD YG +T + QF H L D
Sbjct: 213 GDYTLLELQLETGRTHQIRVHMA-YIGHPIAGDPLYGPRKTLKGQGQFLHAQTLGLTHPD 271
Query: 156 SNEEI 160
S EE+
Sbjct: 272 SGEEL 276
>gi|422854169|ref|ZP_16900833.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK160]
gi|325696405|gb|EGD38295.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK160]
Length = 298
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KK 194
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+T + A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+ G
Sbjct: 195 QAVTA-------KGKSALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAG 245
Query: 133 DYKYG-WQTHRKWKQF 147
D YG +T + QF
Sbjct: 246 DEVYGPRKTLKGHGQF 261
>gi|365117873|ref|ZP_09336706.1| RluA family pseudouridine synthase [Tannerella sp. 6_1_58FAA_CT1]
gi|363651176|gb|EHL90255.1| RluA family pseudouridine synthase [Tannerella sp. 6_1_58FAA_CT1]
Length = 309
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 9/100 (9%)
Query: 38 ILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIK 97
+L R Y A+V G KG +S+ L +N + + N D+ Q+A+TRY+V+K
Sbjct: 175 VLDRRYVAVVEGAFDKDKGEVSSYLA----ENAAYEVYSTQNKDE---GQYALTRYEVLK 227
Query: 98 PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
S Y+ ++L TGRK+Q+RVH + LG I+GD KYG
Sbjct: 228 -SNGKYSLVELQLATGRKNQIRVHMKD-LGHSIIGDKKYG 265
>gi|86358939|ref|YP_470831.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
gi|86283041|gb|ABC92104.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
Length = 354
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G I APLG+ D + V A A+T Y+VI+
Sbjct: 194 LERAYRAVVWGRPRTLSGTIDAPLGRATGDRTRR----AVKRPDSQDADAAITHYEVIER 249
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYG 137
L+ L TGR HQ+RVH A + G P+VGD YG
Sbjct: 250 FQENPDATALASLVECHLETGRTHQIRVHMAHI-GHPLVGDTVYG 293
>gi|422858571|ref|ZP_16905221.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1057]
gi|327460457|gb|EGF06794.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1057]
Length = 298
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLERFAD-YSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|83589720|ref|YP_429729.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
gi|83572634|gb|ABC19186.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
Length = 306
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G +G + AP+G+ VD R+ V + +++ AVT Y+V++
Sbjct: 164 MKRIYLALVHGEVAEPRGRVEAPIGRHPVDR---QRMAVT----LKNSRPAVTHYRVVE- 215
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT L+ TGR HQ+RVH A +G P+VGD KYG
Sbjct: 216 HFPGYTLLEARLETGRTHQIRVHMA-FIGHPVVGDPKYG 253
>gi|359399277|ref|ZP_09192281.1| pseudouridylate synthase [Novosphingobium pentaromativorans US6-1]
gi|357599317|gb|EHJ61031.1| pseudouridylate synthase [Novosphingobium pentaromativorans US6-1]
Length = 232
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVT 91
E+R++++ Y +V G P +G I+ L KV T + +++ A+ AVT
Sbjct: 79 EERLVEKRYLGIVTGVPADDEGTIALSLSKVS---------TAKDGWRMIPARKGKPAVT 129
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
++ + + G T ++ P TGR HQ+RVH A LG P++GD YG + H +
Sbjct: 130 HWRKLD-TRDGLTLIEFRPETGRTHQIRVHAASGLGMPLLGDPVYGTKKAGARTMLHAAA 188
Query: 152 LSKDSNEEIP 161
L+ E+ P
Sbjct: 189 LTVPRGEKAP 198
>gi|253576153|ref|ZP_04853485.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844496|gb|EES72512.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 315
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y+ALV G +G + AP+G+ D TV+ + ++HAVT +QV++
Sbjct: 180 RKYYALVHGNVSHDQGTVDAPIGR---DPHDRKMYTVIERN----SKHAVTHFQVVE-RF 231
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 232 GDYTLLELKLETGRTHQIRVHM-KFIGHPLVGDPLYG 267
>gi|169343529|ref|ZP_02864528.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
gi|169298089|gb|EDS80179.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
Length = 306
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 18 SSGIITVERVMYKDNDNEKRI-------LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 70
+SGI+ V + DN ++K ++R Y+A+V G + G I APLG+
Sbjct: 143 TSGILVVAK---NDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR-----H 194
Query: 71 KSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
DR+ + + AVT Y+V+K SC + +K + TGR HQ+RVH A +G
Sbjct: 195 HRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVKCNLETGRTHQIRVHMA-FIGH 247
Query: 129 PIVGDYKYGWQTHRKWKQ 146
P++GD YG + +K Q
Sbjct: 248 PLLGDTVYGLKKQKKLSQ 265
>gi|422848774|ref|ZP_16895450.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK115]
gi|325689795|gb|EGD31799.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK115]
Length = 298
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KK 194
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+T + A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+ G
Sbjct: 195 QAVTA-------KGKSALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAG 245
Query: 133 DYKYG-WQTHRKWKQF 147
D YG +T + QF
Sbjct: 246 DEVYGPRKTLKGHGQF 261
>gi|406658532|ref|ZP_11066672.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
iniae 9117]
gi|405578747|gb|EKB52861.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
iniae 9117]
Length = 299
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 27 VMYKDNDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
+M ND R+L R Y A+V G +G+I AP+G+ D K V
Sbjct: 139 LMVAKNDEAHRVLADELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSDKDRKKQ---AV 195
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ N + A+TR+ V++ YT ++L+ TGR HQ+RVH A +G P+ GD YG
Sbjct: 196 IAN-----GKEAITRFNVLE-RFGDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDLTYG 248
>gi|262282338|ref|ZP_06060106.1| pseudouridine synthase [Streptococcus sp. 2_1_36FAA]
gi|262261629|gb|EEY80327.1| pseudouridine synthase [Streptococcus sp. 2_1_36FAA]
Length = 296
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 135 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KK 192
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+T + A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+ G
Sbjct: 193 QAVTA-------KGKSALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAG 243
Query: 133 DYKYG-WQTHRKWKQF 147
D YG +T + QF
Sbjct: 244 DEVYGPRKTLKGHGQF 259
>gi|146296933|ref|YP_001180704.1| RluA family pseudouridine synthase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410509|gb|ABP67513.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 300
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+A+ G + GVI+AP+G+ V+ K + VV N + AVT ++V++
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
YT++KL TGR HQ+RVH + + G P++GD YG + Q +
Sbjct: 211 RFDKYTFIKLRLKTGRTHQIRVHMSYI-GYPLLGDSSYGRAKNEFGVQGQVLHAGEIEFV 269
Query: 159 EIPKEKTLHFGLDL 172
K LHF DL
Sbjct: 270 HPITSKVLHFSADL 283
>gi|72127019|ref|XP_792641.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Strongylocentrotus purpuratus]
gi|390368006|ref|XP_003731372.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Strongylocentrotus purpuratus]
Length = 414
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 19/116 (16%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGK-------------SDRITVVNNDQ 82
KR + + Y + VG P +G++ P+ + +D GK D I + + +
Sbjct: 231 KRQIIKRYLVITVGIPSPKEGILDMPMIEKEID-GKHRMVIKPDMADLYPDTIGMRSGRK 289
Query: 83 IMSAQHAVTRYQVI--KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
++ A+TRY+V+ + +C ++L P TG KHQ+RVH A+ LG PI+GD+KY
Sbjct: 290 SRDSKEAITRYKVLSERGNC---ALVQLEPETGVKHQIRVHLAQGLGCPILGDHKY 342
>gi|299535889|ref|ZP_07049209.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|424738829|ref|ZP_18167258.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
gi|298728641|gb|EFI69196.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|422947313|gb|EKU41710.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
Length = 303
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
+ + R Y ALV G KG I AP+G+ D + VV+N +HAVT +QV+
Sbjct: 164 KTVTRKYIALVHGHIAHDKGTIDAPIGR---DQKDRQKQAVVDN-----GKHAVTHFQVV 215
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ YT ++ TGR HQ+RVH +G P+VGD KYG
Sbjct: 216 E-RFGDYTLVECRLETGRTHQIRVHM-NYIGFPLVGDPKYG 254
>gi|182625703|ref|ZP_02953472.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
gi|177909105|gb|EDT71580.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
Length = 306
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 18 SSGIITVERVMYKDNDNEKRI-------LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 70
+SGI+ V + DN ++K ++R Y+A+V G + G I APLG+
Sbjct: 143 TSGILVVAK---NDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR-----H 194
Query: 71 KSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
DR+ + + AVT Y+V+K SC + +K + TGR HQ+RVH A +G
Sbjct: 195 HRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVKCTLETGRTHQIRVHMA-FIGH 247
Query: 129 PIVGDYKYGWQTHRKWKQ 146
P++GD YG + +K Q
Sbjct: 248 PLLGDTVYGLKKQKKLSQ 265
>gi|168215478|ref|ZP_02641103.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
gi|182382386|gb|EDT79865.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
Length = 306
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 18 SSGIITVERVMYKDNDNEKRI-------LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 70
+SGI+ V + DN ++K ++R Y+A+V G + G I APLG+
Sbjct: 143 TSGILVVAK---NDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR-----H 194
Query: 71 KSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
DR+ + + AVT Y+V+K SC + +K + TGR HQ+RVH A +G
Sbjct: 195 HRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVKCTLETGRTHQIRVHMA-FIGH 247
Query: 129 PIVGDYKYGWQTHRKWKQ 146
P++GD YG + +K Q
Sbjct: 248 PLLGDTVYGLKKQKKLSQ 265
>gi|334142863|ref|YP_004536071.1| pseudouridylate synthase [Novosphingobium sp. PP1Y]
gi|333940895|emb|CCA94253.1| pseudouridylate synthase [Novosphingobium sp. PP1Y]
Length = 232
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVT 91
E+R++++ Y +V G P +G I+ L KV T + +++ A+ AVT
Sbjct: 79 EERLVEKRYLGIVTGVPAEDEGTIALSLSKVS---------TAKDGWRMIPARKGKPAVT 129
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
++ + + G T ++ P TGR HQ+RVH A LG P++GD YG + H +
Sbjct: 130 HWRKLD-TRDGLTLIEFRPETGRTHQIRVHAASGLGMPLLGDPVYGTKKAGARTMLHAAA 188
Query: 152 LSKDSNEEIP 161
L+ E+ P
Sbjct: 189 LTVPRGEKAP 198
>gi|365842293|ref|ZP_09383321.1| putative ribosomal large subunit pseudouridine synthase D
[Flavonifractor plautii ATCC 29863]
gi|364576027|gb|EHM53376.1| putative ribosomal large subunit pseudouridine synthase D
[Flavonifractor plautii ATCC 29863]
Length = 299
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+R Y A+ G PR +G I AP+G+V +++ + Q A TRY+V++
Sbjct: 169 FRRIYLAVCEGIPRPPEGCIDAPIGRVPG--------SLMARQVDPAGQPASTRYRVLR- 219
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
+ G ++L TGR HQ+RVH A + G P+ GD+ YG + H
Sbjct: 220 TGQGRALVELELDTGRTHQIRVHMAHI-GHPLTGDFLYGTEDH 261
>gi|194374167|dbj|BAG62396.1| unnamed protein product [Homo sapiens]
Length = 184
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 23/139 (16%)
Query: 67 VDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 126
+D+GK ++ N Q+ AVT+YQV+ S ++L P+TG KHQLRVH + L
Sbjct: 33 MDDGKMVKVRRSRNAQV-----AVTQYQVLS-STLSSALVELQPITGIKHQLRVHLSFGL 86
Query: 127 GTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHL 186
PI+GD+KY W + P LS + +++ GL+ + LHL
Sbjct: 87 DCPILGDHKYS-----DWNRLAPQKLSVGTLKKL--------GLEQSKARYIP----LHL 129
Query: 187 HCKEMTLPNVSQAIQKVQL 205
H +++ LP + +++ L
Sbjct: 130 HARQLILPALGSGKEELNL 148
>gi|121534542|ref|ZP_01666364.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121306794|gb|EAX47714.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 300
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R L+R YWALV G+ G I AP+G + + R + D A+T YQ I
Sbjct: 163 RTLKRTYWALVKGSVSPPAGTIDAPIGP--HPHFANRRAVTAHGDP------AITHYQTI 214
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ S T L+L TGR HQ+RVH A LG PIVGD YG
Sbjct: 215 R-SFPDATLLELILDTGRTHQIRVHLAH-LGYPIVGDGMYG 253
>gi|402553308|ref|YP_006594579.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus FRI-35]
gi|401794518|gb|AFQ08377.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus FRI-35]
Length = 297
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
+++++++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKVVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|329116866|ref|ZP_08245583.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
gi|326907271|gb|EGE54185.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
Length = 295
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 27 VMYKDNDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
+M ND R L R Y A+V G +G+I AP+G+ D K I
Sbjct: 139 LMVAKNDAAHRALADELKAKKSLRKYLAIVHGNLPNDRGIIEAPIGRSEKDRKKQAVIA- 197
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ AVTR+QVI+ YT ++L+ TGR HQ+RVH A +G P+ GD YG
Sbjct: 198 -------RGKEAVTRFQVIE-RFGDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDPLYG 248
>gi|423397977|ref|ZP_17375178.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|401648652|gb|EJS66246.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
Length = 297
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMLEREGTIDAPIGR------KSD--SIIERTVCEDGQKAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI+ S H T + L TGR HQ+RVH A + G P++GD YG +Q H + L
Sbjct: 212 RVIESSSHK-THVALELETGRTHQIRVHMAHI-GHPLLGDDLYGGSRDEMNRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|422821336|ref|ZP_16869529.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK353]
gi|324991250|gb|EGC23184.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK353]
Length = 298
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KK 194
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+T + A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+ G
Sbjct: 195 QAVTA-------KGKSALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAG 245
Query: 133 DYKYG 137
D YG
Sbjct: 246 DEVYG 250
>gi|366053143|ref|ZP_09450865.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
suebicus KCTC 3549]
Length = 305
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 24/129 (18%)
Query: 18 SSGIITVERVMYKDNDNEKRIL---------QRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V + ND R L +R Y A+V G SKG I AP+G+ +V+
Sbjct: 142 TSGLLMVAK-----NDQAHRFLAAQLKNKTNEREYVAIVHGQITESKGTIDAPIGRSIVN 196
Query: 69 NGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
K I +HAVT +QV+K H YT + TGR HQ+RVH + +
Sbjct: 197 RQKQAIIA--------DGRHAVTHFQVLKRYQH-YTLVSCRLETGRTHQIRVHM-QYIHH 246
Query: 129 PIVGDYKYG 137
P+ GD YG
Sbjct: 247 PLAGDPLYG 255
>gi|209963797|ref|YP_002296712.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957263|gb|ACI97899.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 242
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHG 102
YWA+V+G PR G I PL KV + VV+ D + A+T ++++
Sbjct: 94 YWAVVLGRPRGDAGRIDLPLLKVHIPGCSK---VVVDPD----GKPALTDWRLLATDGR- 145
Query: 103 YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+WL+L+P TGR HQLR HCA G PI+GD YG +
Sbjct: 146 LSWLELTPRTGRMHQLRAHCA-CSGFPILGDPIYGAE 181
>gi|152979640|ref|YP_001345269.1| pseudouridine synthase [Actinobacillus succinogenes 130Z]
gi|150841363|gb|ABR75334.1| pseudouridine synthase [Actinobacillus succinogenes 130Z]
Length = 219
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 17 VSSGIITVERVMYKDNDNEKRILQR----WYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SGII D++ +++ +R +Y A+V G P+ G ++ PL + D
Sbjct: 66 ATSGIILFAMSKLADSELKRQFRERQTEKFYQAVVWGHPKQDSGTVNLPL---ICDWENR 122
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
R + N + + AVT+++V++ + T LKL+P+TGR HQLR+H LG PI+G
Sbjct: 123 PRQRIDFN----AGKSAVTKFEVLERLPNNSTRLKLTPITGRSHQLRLHML-ALGHPILG 177
Query: 133 DYKYG 137
D Y
Sbjct: 178 DKFYA 182
>gi|333904809|ref|YP_004478680.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|333120074|gb|AEF25008.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|456370694|gb|EMF49590.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02109]
gi|457095660|gb|EMG26131.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02083]
Length = 295
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y A+V G +G+I AP+G+ D K I + AVTR+QVI+
Sbjct: 162 RKYLAIVHGNLPNDRGIIEAPIGRSEKDRKKQAVIA--------RGKEAVTRFQVIE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++L+ TGR HQ+RVH A +G P+ GD YG
Sbjct: 213 GDYTLVELTLETGRTHQIRVHMA-YIGHPVAGDPLYG 248
>gi|325106295|ref|YP_004275949.1| ribosomal large subunit pseudouridine synthase D [Pedobacter
saltans DSM 12145]
gi|324975143|gb|ADY54127.1| ribosomal large subunit pseudouridine synthase D [Pedobacter
saltans DSM 12145]
Length = 235
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R + + YWA+V P +S L +V N + + IT N ++ + Q A ++
Sbjct: 92 KEREMHKTYWAVVKNKPSK----MSGNLVHWLVKNPRKN-ITTAYNQEVPNGQRAELNFK 146
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 138
VI GY +++ P+TGR HQ+RV A LG+PIVGD KYG+
Sbjct: 147 VIG-HIDGYYVIEVDPITGRPHQIRVQMAS-LGSPIVGDNKYGY 188
>gi|110803816|ref|YP_699133.1| pseudouridine synthase [Clostridium perfringens SM101]
gi|110684317|gb|ABG87687.1| pseudouridine synthase, RluA family [Clostridium perfringens SM101]
Length = 306
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 18 SSGIITVERVMYKDNDNEKRI-------LQRWYWALVVGTPRCSKGVISAPLGKVVVDNG 70
+SGI+ V + DN ++K ++R Y+A+V G + G I APLG+
Sbjct: 143 TSGILVVAK---NDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR-----H 194
Query: 71 KSDRITVVNNDQIMSAQHAVTRYQVIK--PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT 128
DR+ + + AVT Y+V+K SC + +K + TGR HQ+RVH A +G
Sbjct: 195 HRDRLKYA---VVKDGKRAVTHYEVLKVFNSC---SLVKCTLETGRTHQIRVHMA-FIGH 247
Query: 129 PIVGDYKYGWQTHRKWKQ 146
P++GD YG + +K Q
Sbjct: 248 PLLGDTVYGLKKQKKLSQ 265
>gi|118443119|ref|YP_878025.1| ribosomal large subunit pseudouridine synthase D [Clostridium novyi
NT]
gi|118133575|gb|ABK60619.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Clostridium novyi NT]
Length = 304
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 28/136 (20%)
Query: 18 SSGIITVERVMYKDNDNEKRIL---------QRWYWALVVGTPRCSKGVISAPLGKVVVD 68
+SG++ V + NDN IL +R Y ALV G + +G I PLG+
Sbjct: 141 TSGVLVVAK-----NDNAHIILSEQLKEHSMKREYVALVEGIIKDDEGTIDEPLGR---- 191
Query: 69 NGKSDRI--TVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVL 126
DRI VV N ++A+T Y+VI+ + T +K TGR HQ+RVH A +
Sbjct: 192 -NPKDRIKRAVVRN-----GKNAITHYEVIR-RFNKNTLVKCILETGRTHQIRVHMAHI- 243
Query: 127 GTPIVGDYKYGWQTHR 142
P+VGD YG++ R
Sbjct: 244 NHPLVGDPMYGFKKQR 259
>gi|345870201|ref|ZP_08822155.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
gi|343922143|gb|EGV32848.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
Length = 308
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 28 MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQ 87
+ ++N KR Y AL VG K V+ APL K V+ G +R+ V+ + A+
Sbjct: 152 LIRENGMTKR-----YRALFVGDLAREKLVVDAPLKKNVLQGG--ERVVRVDQAEGKPAR 204
Query: 88 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT-HRKWKQ 146
R + + +T ++ +TGR HQ+RVH A LGTP+ GD KYG + +R+ K+
Sbjct: 205 TIFRRLRRLTSKGRVFTLVEAELVTGRTHQIRVHAAH-LGTPLAGDPKYGDEAMNRELKR 263
Query: 147 F 147
Sbjct: 264 L 264
>gi|296284607|ref|ZP_06862605.1| pseudouridine synthase D large subunit [Citromicrobium
bathyomarinum JL354]
Length = 314
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y A+ G PR ++G I A LG+ D K V + Q +HAVT Y+ K
Sbjct: 167 ISRRYVAVCAGQPRPAEGTIDARLGRSDRDRKK----MAVLDPQSTRGKHAVTHYRTTK- 221
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP 149
+ + L+ TGR HQ+RVHCA + G P++GD +YG R K P
Sbjct: 222 TFGVASILECRLETGRTHQVRVHCASI-GHPLLGDPQYG----RDPKALRP 267
>gi|197119918|ref|YP_002140345.1| RNA pseudouridine synthase, RluA family [Geobacter bemidjiensis
Bem]
gi|197089278|gb|ACH40549.1| RNA pseudouridine synthase, RluA family [Geobacter bemidjiensis
Bem]
Length = 297
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKV------VVDNGKSDRITVVNNDQIMSAQHAVTR 92
+Q+ YWALV G+P + APLGKV V NGK R T
Sbjct: 162 VQKTYWALVAGSPDQQSWKVDAPLGKVSKFKYGVALNGKPAR----------------TL 205
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++V+ G T ++ PLTGR HQ+RVH A G PI+GD YG
Sbjct: 206 FRVVGEGA-GVTAVEAKPLTGRTHQIRVHLAHS-GFPIIGDETYG 248
>gi|344291607|ref|XP_003417526.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Loxodonta africana]
Length = 375
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 44/205 (21%)
Query: 43 YWALVVGTPRCSKGVISAPLGKVVVDNG------------KSDRITVVNNDQIMSAQHAV 90
YWA+ + P S GV+ P+ + V + D T+V +A AV
Sbjct: 183 YWAITIRVPTPSAGVVDIPIIEKEVQGQQKHRKMTLSPSYRMDNGTMVKVRSSRNAHIAV 242
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY W + P
Sbjct: 243 TQYQVLS-STLSSALLELHPVTGVKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQ 296
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
LS + +++ GL+ + LHLH +++ LP +
Sbjct: 297 KLSAGTLKKL--------GLEQSKTRYIP----LHLHARQLVLPAMG------------- 331
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
S+ E L LV +P RS L
Sbjct: 332 -SRKEELNLVCKVPRFFVRSLSRLG 355
>gi|206603460|gb|EDZ39940.1| pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II '5-way CG']
Length = 340
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18 SSGIITVER----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ V + V+ N + R + + Y ALV G +G I+AP+G+ D K
Sbjct: 168 TSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKK-- 225
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
V D + ++TRY+V++ Y+ L+++ LTGR HQ+RVH LG P++GD
Sbjct: 226 --FAVRQD----GKPSLTRYRVLETYHENYSLLEVTLLTGRTHQIRVHFRH-LGFPLLGD 278
Query: 134 YKYG 137
YG
Sbjct: 279 AVYG 282
>gi|312793558|ref|YP_004026481.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180698|gb|ADQ40868.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 300
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+A+ G + GVI+AP+G+ V+ K + VV N + AVT ++V++
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
YT++KL TGR HQ+RVH + + G P++GD YG + Q +
Sbjct: 211 RFDKYTFIKLRLKTGRTHQIRVHMSYI-GYPLLGDSSYGRAKNEFGVQGQVLHAGEIEFV 269
Query: 159 EIPKEKTLHFGLDL 172
K LHF DL
Sbjct: 270 HPITSKVLHFSADL 283
>gi|293401501|ref|ZP_06645644.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452301|ref|ZP_09544216.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
gi|291305139|gb|EFE46385.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371966794|gb|EHO84276.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
Length = 305
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + + R Y+ALV G G I AP+G+ V D K +T N A+ A T ++
Sbjct: 162 QNKTVNRLYYALVHGVIEHDFGTIDAPIGRDVKDRQKM-AVTATN------AKDARTHFK 214
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
VI+ H YT ++ TGR HQ+RVH + + P+VGD KY ++
Sbjct: 215 VIERFAH-YTLVECRLETGRTHQIRVHM-QYIKHPVVGDEKYSYR 257
>gi|392303781|emb|CCI70144.1| ribosomal large subunit pseudouridine synthase D [Paenibacillus
polymyxa M1]
Length = 334
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV G +G + AP+G+ D+G TV + ++HAVT + VI+
Sbjct: 199 RKYIALVHGHLSHDQGTVDAPIGR---DSGDRKMFTVTERN----SKHAVTHFLVIE-RL 250
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 251 GDYTLLELQLETGRTHQIRVHM-KFIGHPLVGDPMYG 286
>gi|344996038|ref|YP_004798381.1| RluA family pseudouridine synthase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964257|gb|AEM73404.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 300
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+A+ G + GVI+AP+G+ V+ K + VV N + AVT ++V++
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNE 158
YT++KL TGR HQ+RVH + + G P++GD YG + Q +
Sbjct: 211 RFDKYTFIKLRLKTGRTHQIRVHMSYI-GYPLLGDSSYGRAKNEFGVQGQVLHAGEIEFV 269
Query: 159 EIPKEKTLHFGLDL 172
K LHF DL
Sbjct: 270 HPITSKVLHFSADL 283
>gi|405377633|ref|ZP_11031573.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397325899|gb|EJJ30224.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 341
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G I APLG+ D + V + SA A+T Y+V++
Sbjct: 181 LERAYQAIVWGRPRSLSGTIDAPLGRATGDRTRR----AVKRPENESADEAITHYEVLER 236
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYG 137
L+ L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FHESPDASALASLVECHLETGRTHQIRVHMAHI-GHPLLGDAVYG 280
>gi|125717901|ref|YP_001035034.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK36]
gi|422862703|ref|ZP_16909335.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK408]
gi|125497818|gb|ABN44484.1| Ribosomal large subunit pseudouridine synthase D, putative
[Streptococcus sanguinis SK36]
gi|327474176|gb|EGF19586.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK408]
Length = 298
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|373117635|ref|ZP_09531781.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
7_1_58FAA]
gi|371668373|gb|EHO33482.1| RluA family pseudouridine synthase [Lachnospiraceae bacterium
7_1_58FAA]
Length = 220
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 9 HVYEKCIAVSSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGK 64
H ++ +SG++ V + + + ++ +R Y A+ G PR +G I AP+G+
Sbjct: 56 HPVQRLDKGTSGLLVVAKHPHAQEQLKGQLHTPAFRRIYLAVCEGIPRPPEGCIDAPIGR 115
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
V +++ + Q A TRY+V++ + G ++L TGR HQ+RVH A
Sbjct: 116 VPG--------SLMARQVDPAGQPASTRYRVLR-TGQGRALVELELDTGRTHQIRVHMAH 166
Query: 125 VLGTPIVGDYKYGWQTH 141
+ G P+ GD+ YG + H
Sbjct: 167 I-GHPLTGDFLYGTEDH 182
>gi|240976679|ref|XP_002402471.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
gi|215491192|gb|EEC00833.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
Length = 263
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 14/149 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R+ +++Y A++ G R ++ +P+G+ S ++ + D +S + A TR V
Sbjct: 96 QRLAKKYYVAILEGHVRDDHVLVDSPIGEDKRPQ-HSHKMCTADKDYCVSPRGAQTRLLV 154
Query: 96 I-------KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH 148
+ +P+ T + L P+TGR+HQLRVHCA LG IVGD+ YG + H
Sbjct: 155 LWRGLLKGRPA----TKVLLRPVTGRRHQLRVHCAS-LGHTIVGDFTYGEDASSRRMFLH 209
Query: 149 PSDLSKDSN-EEIPKEKTLHFGLDLESGS 176
L + E + E F D ++GS
Sbjct: 210 ACRLVLPTEVETLDVETPDPFAADFDAGS 238
>gi|421488498|ref|ZP_15935886.1| pseudouridine synthase, RluA family [Streptococcus oralis SK304]
gi|400367715|gb|EJP20730.1| pseudouridine synthase, RluA family [Streptococcus oralis SK304]
Length = 299
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ L+L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLLELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGQGQF 259
>gi|401683181|ref|ZP_10815070.1| pseudouridine synthase, RluA family [Streptococcus sp. AS14]
gi|400183863|gb|EJO18114.1| pseudouridine synthase, RluA family [Streptococcus sp. AS14]
Length = 298
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|418964654|ref|ZP_13516445.1| pseudouridine synthase, RluA family [Streptococcus constellatus
subsp. constellatus SK53]
gi|383344668|gb|EID22825.1| pseudouridine synthase, RluA family [Streptococcus constellatus
subsp. constellatus SK53]
Length = 298
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + + D +K+ L R YWA+V G +GVI AP+G+ N K
Sbjct: 135 TSGLLMIAKNDDAHIKLADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGR----NEKD 189
Query: 73 DRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVG 132
+ V + AVTR+ V++ YT ++L TGR HQ+RVH A +G P+ G
Sbjct: 190 RKKQAVT----AKGKSAVTRFHVLE-RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAG 243
Query: 133 DYKYG-WQTHRKWKQF 147
D YG +T + QF
Sbjct: 244 DEVYGPRKTLKGHGQF 259
>gi|86605450|ref|YP_474213.1| RluA family pseudouridine synthase [Synechococcus sp. JA-3-3Ab]
gi|86553992|gb|ABC98950.1| pseudouridine synthase, RluA family [Synechococcus sp. JA-3-3Ab]
Length = 310
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y +V G P S+G ISAP+G+ VD K + VV Q + AVT +Q
Sbjct: 164 QAKTARRIYLGVVFGRPAQSQGTISAPIGRHPVDRQK---MAVVPPGQ---GRAAVTHWQ 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
V++ YT ++ TGR HQ+RVH A L PIVGD Y
Sbjct: 218 VLE-RLGNYTLMQFELETGRTHQIRVHAAH-LRLPIVGDPLY 257
>gi|157803478|ref|YP_001492027.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. McKiel]
gi|379022679|ref|YP_005299340.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. CA410]
gi|157784741|gb|ABV73242.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. McKiel]
gi|376323617|gb|AFB20858.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. CA410]
Length = 303
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 67/111 (60%), Gaps = 7/111 (6%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
+++ + Y+A+ G P + G + + + K G + +IT ++++ + + A+T Y+++
Sbjct: 166 KLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTRKITDIDSE---NGKLAITYYKLL 219
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
K + ++ +P+TG+ HQLR+H A++LG PI+GD KYG + + Q+
Sbjct: 220 KSLDNNLFLIEFTPITGKMHQLRLH-AKLLGCPILGDDKYGNKEIMPYSQY 269
>gi|390452025|ref|ZP_10237581.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
gi|389660237|gb|EIM71944.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
Length = 267
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 28/128 (21%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLG--------KVVVDNGKSDRITVVNNDQIMSAQHAV 90
L+R Y A+V G P G I APLG + VV G+SD A+HAV
Sbjct: 106 LERAYVAVVWGAPERMAGTIDAPLGRHAQSRTLRAVVPAGRSD------------ARHAV 153
Query: 91 TRYQVIK---PSCHGYTW---LKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
TRYQV K G + ++ TGR HQ+RVH A + G P++GD YG K
Sbjct: 154 TRYQVQKRYGADGSGKAFAAKVECRLETGRTHQIRVHMAHI-GHPLIGDADYGRAFRTKV 212
Query: 145 KQFHPSDL 152
+ P D+
Sbjct: 213 NRL-PEDI 219
>gi|422876543|ref|ZP_16923013.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1056]
gi|332361351|gb|EGJ39155.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1056]
Length = 298
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|157962324|ref|YP_001502358.1| RluA family pseudouridine synthase [Shewanella pealeana ATCC
700345]
gi|157847324|gb|ABV87823.1| pseudouridine synthase, RluA family [Shewanella pealeana ATCC
700345]
Length = 319
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G + VI APL K+ + +G +RI VN + + + TR+++++
Sbjct: 175 MQKDYVALVRGEWQSHDKVIKAPLLKLTLKSG--ERIVRVNKE----GKESETRFKILQ- 227
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 228 RYEDSTLVQASPVTGRTHQIRVHC-QFAGHPIACDEKYSEQ 267
>gi|442805040|ref|YP_007373189.1| pseudouridine synthase RluA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740890|gb|AGC68579.1| pseudouridine synthase RluA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 306
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y A+V G R +GVI AP+G+ VD K + VV + A+T ++V++
Sbjct: 170 MKRVYDAIVEGIIREDRGVIDAPIGRHPVDRKK---MAVVPG----KGKEAITHFEVLE- 221
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
G T+++L TGR HQ+RVH A + P+ GD YG T +
Sbjct: 222 RLKGATYVRLRLETGRTHQIRVHMA-YINHPVYGDPLYGRSTKK 264
>gi|158335489|ref|YP_001516661.1| RluA family pseudouridine synthase [Acaryochloris marina MBIC11017]
gi|158305730|gb|ABW27347.1| pseudouridine synthase, RluA family [Acaryochloris marina
MBIC11017]
Length = 328
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y LV G P G + P+G+ +SDRI + + + AVT +Q+++P
Sbjct: 172 REYVGLVYGRPSALTGRMEFPIGR-----HRSDRIKMAVVPEEQGGKVAVTHWQILQP-L 225
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
Y +K TGR HQ+RVHCA+ +G PIVGD Y
Sbjct: 226 GNYALVKFRLETGRTHQIRVHCAQ-MGWPIVGDPLY 260
>gi|310642966|ref|YP_003947724.1| RNA pseudouridine synthase ylyb [Paenibacillus polymyxa SC2]
gi|309247916|gb|ADO57483.1| Uncharacterized RNA pseudouridine synthase ylyB [Paenibacillus
polymyxa SC2]
Length = 323
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G +G + AP+G+ D+G TV + ++HAVT + VI+
Sbjct: 186 VTRKYIALVHGHLSHDQGTVDAPIGR---DSGDRKMFTVTERN----SKHAVTHFLVIE- 237
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 238 RLGDYTLLELQLETGRTHQIRVHM-KFIGHPLVGDPMYG 275
>gi|347750769|ref|YP_004858334.1| RluA family pseudouridine synthase [Bacillus coagulans 36D1]
gi|347583287|gb|AEO99553.1| pseudouridine synthase, RluA family [Bacillus coagulans 36D1]
Length = 290
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 6 TASHVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAP 61
+A HV + +SG++ + + Y + +K ++ R Y AL G G I AP
Sbjct: 126 SAVHVVTRLDRNTSGLVLIAKNRYIHHLCSLMQQKHVICRTYEALAEGAFTEKSGTIEAP 185
Query: 62 LGK---VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 118
+G+ +++ G D Q A T Y+V++ Y ++L TGR HQ+
Sbjct: 186 IGRKETSIIERGVRD-----------DGQFARTHYEVVR-QFPAYAHVRLRLDTGRTHQI 233
Query: 119 RVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDLS 153
RVH + +G P++GD YG T R +Q H S+LS
Sbjct: 234 RVHLS-YIGHPLLGDSLYGGNTSRFTRQALHCSELS 268
>gi|428780052|ref|YP_007171838.1| RluA family pseudouridine synthase [Dactylococcopsis salina PCC
8305]
gi|428694331|gb|AFZ50481.1| pseudouridine synthase, RluA family [Dactylococcopsis salina PCC
8305]
Length = 310
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 18 SSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG I V + + +K+I +R Y LV G P+ G I P+G+ VD K
Sbjct: 144 TSGAIVVAKNDFSHQHLQKQIQDKTAKREYLGLVYGVPKGENGSIDLPIGRHPVDRKK-- 201
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+ VV ++A+T +Q ++ Y+ L TGR HQ+RVHCA + G PIVGD
Sbjct: 202 -MAVVER----GGRNAITHWQ-LQERLGNYSLLAFQLETGRTHQIRVHCAAI-GHPIVGD 254
Query: 134 YKY 136
Y
Sbjct: 255 PVY 257
>gi|284037752|ref|YP_003387682.1| pseudouridine synthase [Spirosoma linguale DSM 74]
gi|283817045|gb|ADB38883.1| pseudouridine synthase, RluA family [Spirosoma linguale DSM 74]
Length = 308
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 18/123 (14%)
Query: 27 VMYKDNDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITV 77
+M+ ++ +R++Q R Y ALV G P +G I++ L + S + V
Sbjct: 151 MMFAKSEKVQRLMQESWNATTKERTYVALVEGIPEPPQGTITSYLRE-------SKALIV 203
Query: 78 VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++ + Q ++T Y V K + +GY L+L TGRK+Q+RVH ++ G P+ GD KYG
Sbjct: 204 YSSQNPDTGQLSITNYTVTK-TGNGYALLELELETGRKNQIRVHMQDI-GHPVAGDEKYG 261
Query: 138 WQT 140
++
Sbjct: 262 AES 264
>gi|241574172|ref|XP_002403064.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
gi|215502139|gb|EEC11633.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
Length = 443
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 31/172 (18%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND----------QIM 84
+K + + Y A+ G P +GVI PL + V+ K V+N +
Sbjct: 265 QKHQVSKTYLAITAGVPDHLEGVIDMPLAEGEVEGAKR---MVLNPKLDPEFQRLVPKFR 321
Query: 85 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+ AVT Y+V+ SC +L+L P TG KHQLR H L PI+GD+KY
Sbjct: 322 KSFAAVTTYRVLA-SCGRAGYLELRPTTGVKHQLRAHLGLGLRCPILGDHKY-------- 372
Query: 145 KQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNV 196
S L + + +++P + G+ S + P LHLH + + +P +
Sbjct: 373 -----SHLRRLAPQKLPGDMLDRLGI---RQSKVRDAP-LHLHARAVVVPEI 415
>gi|402488750|ref|ZP_10835557.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
gi|401812217|gb|EJT04572.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
Length = 341
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G + APLG+ D + V A A+T YQV+
Sbjct: 181 LERAYQAVVWGRPRTLTGTVDAPLGRATGDRTRR----AVKRPDSHDADEAITHYQVVER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
KP L L TGR HQ+RVH A + G P++GD YG K P D+
Sbjct: 237 FQEKPDATALASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYGAGFKTKANIL-PEDI 294
Query: 153 SKDSN 157
K N
Sbjct: 295 RKVVN 299
>gi|296332341|ref|ZP_06874802.1| putative RNA pseudouridine synthase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673620|ref|YP_003865292.1| RNA pseudouridine synthase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296150259|gb|EFG91147.1| putative RNA pseudouridine synthase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411864|gb|ADM36983.1| putative RNA pseudouridine synthase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 302
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D EK+ L+R Y A+ G + KG I +P+G+ DR S Q AV
Sbjct: 158 DQQLEKKTLKRTYTAITEGKLKTKKGTIDSPIGR--------DRSHPTRRRVSPSGQTAV 209
Query: 91 TRYQVIKPSC-HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
T ++V+ + T ++L TGR HQ+RVH A + G P++GD YG
Sbjct: 210 THFKVVASNAKERLTLVELELETGRTHQIRVHMASI-GHPLIGDALYG 256
>gi|359452842|ref|ZP_09242181.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20495]
gi|358050162|dbj|GAA78430.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20495]
Length = 551
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R + + Y ALV G GVI PL V+D R V + ++T +QV
Sbjct: 424 ERTIDKRYVALVNGNVAEDSGVIDLPL---VLDFDDKPRQMVC----YTHGKPSLTTWQV 476
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + + T L+L P TGR HQLRVHCA LG PI+GD YG + R
Sbjct: 477 LERN-NNITRLQLYPKTGRTHQLRVHCAHSLGLNMPIIGDTHYGQKADR 524
>gi|167771408|ref|ZP_02443461.1| hypothetical protein ANACOL_02774 [Anaerotruncus colihominis DSM
17241]
gi|167666048|gb|EDS10178.1| pseudouridine synthase, RluA family [Anaerotruncus colihominis DSM
17241]
Length = 306
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
R Y A+V G +G + AP+G+ ++DR + D+ +A+ AVT Y+V++
Sbjct: 168 FTRIYNAVVYGGFSTDEGTVDAPIGR-----SQNDRKKMCVTDR--NARGAVTHYRVLE- 219
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+TWLKL TGR HQ+RVH A + G P+ GD YG Q
Sbjct: 220 RLGRFTWLKLCLETGRTHQIRVHMAYI-GHPVAGDPIYGPQ 259
>gi|288929792|ref|ZP_06423635.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 317 str. F0108]
gi|288328893|gb|EFC67481.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 317 str. F0108]
Length = 542
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 69/142 (48%), Gaps = 30/142 (21%)
Query: 35 EKRILQRWYWALVVG--TPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
E +++ Y A++ G P +G IS PL +D + +V+ ++ + AVTR
Sbjct: 409 ENHEVKKRYVAVLDGLLPPEKQRGEISLPLNSNYLDRPRQ----MVD---WLNGKSAVTR 461
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKW------ 144
Y+VI G T + L PLTGR HQLRVHCA + L PI+GD YG + R +
Sbjct: 462 YEVIGHE-EGRTIVALYPLTGRTHQLRVHCAHPDGLNLPILGDPLYGRKADRMYLHAEVI 520
Query: 145 ------------KQFHPSDLSK 154
K FHP L+K
Sbjct: 521 EVEKLGLRVEDDKWFHPQSLNK 542
>gi|157150916|ref|YP_001450379.1| RluA family pseudouridine synthase [Streptococcus gordonii str.
Challis substr. CH1]
gi|157075710|gb|ABV10393.1| pseudouridine synthase, RluA family [Streptococcus gordonii str.
Challis substr. CH1]
Length = 296
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 135 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 192
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 193 ---------QAVTAKGKPALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPV 241
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 242 AGDEVYGPRKTLKGHGQF 259
>gi|198425133|ref|XP_002130987.1| PREDICTED: similar to RNA pseudouridylate synthase domain
containing 4 [Ciona intestinalis]
Length = 494
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 48/216 (22%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS----DRITV---VNNDQIMSAQ 87
++R+L R Y A+VVG P KGV+ P+ + +V KS R+ + V D +
Sbjct: 244 QRRVL-RKYLAVVVGEPEPMKGVVDMPMSESIVSATKSTKRHSRMIIKPDVRYDDATGKE 302
Query: 88 H---------AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGW 138
+ A+T Y+ I + + ++L P T KHQLRVH A+ L PI+GD+KY
Sbjct: 303 YPLRNAGGHTAITHYRTID-TTGDLSLVELQPQTTVKHQLRVHMADGLSCPILGDHKYSR 361
Query: 139 QTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQ 198
+ P L + IP K+ + LHLH +++ +P V
Sbjct: 362 YGSLAPQVLPPRVLRMFN---IPHSKSRYMP--------------LHLHLQQVLIPGV-- 402
Query: 199 AIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVL 234
D SK + + + LP H R+ ++L
Sbjct: 403 ----------LDGSK-PNMVVGSRLPFHFSRTLNLL 427
>gi|417939828|ref|ZP_12583116.1| pseudouridine synthase, RluA family [Streptococcus oralis SK313]
gi|343388709|gb|EGV01294.1| pseudouridine synthase, RluA family [Streptococcus oralis SK313]
Length = 299
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|257126163|ref|YP_003164277.1| pseudouridine synthase [Leptotrichia buccalis C-1013-b]
gi|257050102|gb|ACV39286.1| pseudouridine synthase, RluA family [Leptotrichia buccalis
C-1013-b]
Length = 326
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
+ +++ Y A++ G G I +G+ D ++TV+N+ + S + A+T Y+VI
Sbjct: 183 KTVKKIYLAILKGKLNQKSGRIVTQIGR---DKNDRKKMTVIND--LNSGKTAITNYEVI 237
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLS 153
+T +K+ TGR HQ+RVH LG PI+GD YG K + H L
Sbjct: 238 -SQTEKFTLVKVHIETGRTHQIRVHMKH-LGYPILGDSVYGRTDTEKRQMLHAYKLE 292
>gi|430004492|emb|CCF20287.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Rhizobium sp.]
Length = 328
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT-VVNNDQIMSAQHAVTRYQVI- 96
L+R Y A+V G P+ KG I APLG+ G DR V + A+ A+T Y+V+
Sbjct: 168 LERAYQAVVWGRPKQLKGTIDAPLGR-----GGGDRTKRAVKREDSDDAREAITHYEVVE 222
Query: 97 ----KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKY--GWQT 140
KP L L TGR HQ+RVH A + G P++GD Y G++T
Sbjct: 223 RFHEKPDATALASLVECRLETGRTHQIRVHMAHI-GCPLIGDSDYSGGFRT 272
>gi|398831174|ref|ZP_10589353.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398212742|gb|EJM99344.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 350
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V GTP + G I A LG+ D K + +++ A+HAVT ++V++
Sbjct: 187 LERAYLAIVWGTPDRTTGTIDAHLGRSHRDRTKQ----AIVHEEREDARHAVTHFEVLER 242
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
L+ L TGR HQ+RVH + G P+VGD +YG K +F
Sbjct: 243 FGAREDSTALASLIECQLETGRTHQIRVHMTHI-GHPLVGDMEYGGAYKTKANKF 296
>gi|383501974|ref|YP_005415333.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
australis str. Cutlack]
gi|378932985|gb|AFC71490.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
australis str. Cutlack]
Length = 303
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K G + ++T ++++ + + A+T Y+
Sbjct: 164 KEKLIVKTYFAVTYGKPIKNVGEVRSNIEK---SKGSTPKMTDIDSE---NGRLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
++K + ++ +P+TGR HQLR+H +++LG PIVGD KYG + + K+ H ++
Sbjct: 218 LLKSLDNNLFLIEFTPVTGRMHQLRLH-SKLLGCPIVGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +E+ E L F
Sbjct: 277 IYLSEKIFGQEVKLEAKLPF 296
>gi|59857911|gb|AAX08790.1| hypothetical protein FLJ14494 [Bos taurus]
gi|157279001|gb|AAI34591.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
gi|296471773|tpg|DAA13888.1| TPA: RNA pseudouridylate synthase domain-containing protein 4 [Bos
taurus]
Length = 377
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ +D+GK R+
Sbjct: 179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+Y+V+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 N-----AQLAVTQYRVLS-SSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 291 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 334
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 335 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 365
>gi|375309375|ref|ZP_09774656.1| RNA pseudouridine synthase ylyb [Paenibacillus sp. Aloe-11]
gi|375078684|gb|EHS56911.1| RNA pseudouridine synthase ylyb [Paenibacillus sp. Aloe-11]
Length = 323
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV G +G + AP+G+ D+G TV + ++HAVT + VI+
Sbjct: 188 RKYIALVHGHLSHDQGTVDAPIGR---DSGDRKLFTVTERN----SKHAVTHFLVIE-RL 239
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 240 GDYTLLELQLETGRTHQIRVHM-KFIGHPLVGDPMYG 275
>gi|335032000|ref|ZP_08525412.1| pseudouridine synthase, RluA family [Streptococcus anginosus SK52 =
DSM 20563]
gi|333768140|gb|EGL45343.1| pseudouridine synthase, RluA family [Streptococcus anginosus SK52 =
DSM 20563]
Length = 298
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|319939285|ref|ZP_08013648.1| pseudouridine synthase [Streptococcus anginosus 1_2_62CV]
gi|319811681|gb|EFW07957.1| pseudouridine synthase [Streptococcus anginosus 1_2_62CV]
Length = 298
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|315221340|ref|ZP_07863261.1| pseudouridine synthase, RluA family [Streptococcus anginosus F0211]
gi|315189459|gb|EFU23153.1| pseudouridine synthase, RluA family [Streptococcus anginosus F0211]
Length = 298
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|302382659|ref|YP_003818482.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193287|gb|ADL00859.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
Length = 248
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L + Y ALV P +G I+ PL V + G+ + V D AQ + +RY+ +
Sbjct: 99 LTKTYLALVSAAPEPPQGDINVPL--VRQEIGRESYMRVAAFD-TKGAQGSRSRYRTLAS 155
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
S G ++L P TGR HQLRVH A + G P++GD +YG
Sbjct: 156 SDDG-ALVELQPFTGRMHQLRVHMAHI-GRPLIGDVRYG 192
>gi|167623698|ref|YP_001673992.1| RluA family pseudouridine synthase [Shewanella halifaxensis
HAW-EB4]
gi|167353720|gb|ABZ76333.1| pseudouridine synthase, RluA family [Shewanella halifaxensis
HAW-EB4]
Length = 319
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G + VI APL K+ + +G +RI VN + + + TR+++++
Sbjct: 175 MQKDYVALVRGEWQSHDKVIKAPLLKLTLKSG--ERIVRVNKE----GKESETRFKILQR 228
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 229 YSDS-TLVQASPVTGRTHQIRVHC-QFAGHPIACDEKYSEQ 267
>gi|220909998|ref|YP_002485309.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219866609|gb|ACL46948.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 313
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R Y +V G P+ S G I P+G+ VD K + VV +D+ + AVT +Q I+
Sbjct: 163 RREYLGVVYGVPKTSSGRIDLPIGRHPVDRKK---MAVVASDK---GRSAVTHWQ-IQER 215
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+T L+ TGR HQ+RVH A+ LG PIVGD Y
Sbjct: 216 LGNFTLLQFQLETGRTHQIRVHIAQ-LGHPIVGDPLY 251
>gi|110331955|gb|ABG67083.1| RNA pseudouridylate synthase domain containing 4 [Bos taurus]
Length = 377
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 91/212 (42%), Gaps = 47/212 (22%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPL-----------------GKVVVDNGKSDRITVVN 79
R + + YWA+ V P GV+ P+ +D+GK R+
Sbjct: 179 RQVTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSR 238
Query: 80 NDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
N AQ AVT+Y+V+ S L+L P+TG KHQLRVH + L PI+GD+KY
Sbjct: 239 N-----AQLAVTQYRVLS-SSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYS-- 290
Query: 140 THRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQA 199
W + P LS +++ GL L LHLH ++TLP +
Sbjct: 291 ---DWNRLAPQKLSAGILKKL--------GLQQSKARHLP----LHLHACQLTLPALQP- 334
Query: 200 IQKVQLSSGCD-----VSKLETLKLVAPLPSH 226
QK +L+ C V+ L L L P H
Sbjct: 335 -QKEELTLLCRPPRYFVNSLRRLGLKMPSRDH 365
>gi|376002440|ref|ZP_09780273.1| 23S rRNA pseudouridine synthase [Arthrospira sp. PCC 8005]
gi|375329180|emb|CCE16026.1| 23S rRNA pseudouridine synthase [Arthrospira sp. PCC 8005]
Length = 308
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y ++ G P+ + GVI P+G+ SDR + Q + A+T ++
Sbjct: 163 QAKTARRQYLGIIYGVPKTTSGVIDQPIGR-----HPSDRKKMAIVPQHQGGRSAITHWK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V K YT ++ TGR HQ+RVH A +G PIVGD YG
Sbjct: 218 V-KERLGNYTLIEFELETGRTHQIRVHSAS-MGHPIVGDRVYG 258
>gi|397676641|ref|YP_006518179.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|2995386|emb|CAA63803.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397330|gb|AFN56657.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 219
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+++ YWA++ G P ++G I PL K+ + +V +D+ + AVT ++++
Sbjct: 86 VKKCYWAILEGVPEKNEGTIDLPLLKI---SSPKSGWRIVADDK---GKRAVTHWEILAK 139
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+ G + + P TGR HQLRVH A LG PIVGD Y
Sbjct: 140 N-KGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFY 176
>gi|83312510|ref|YP_422774.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947351|dbj|BAE52215.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 225
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 15/108 (13%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNG---KSDRITVVNNDQIMSAQHAVTR 92
K + + YWA+VVG PR +GVI L K G + DR + + VT+
Sbjct: 82 KGLADKTYWAVVVGKPREDQGVIDYALKKREKKFGWRMEVDRTGLAS----------VTQ 131
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
++++ +WL+ PLTGR HQ+R HCA + G P+VGD YG T
Sbjct: 132 WRLLGSDGR-LSWLECRPLTGRTHQIRAHCAAI-GHPLVGDSIYGRGT 177
>gi|414070976|ref|ZP_11406953.1| ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas
sp. Bsw20308]
gi|410806597|gb|EKS12586.1| ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas
sp. Bsw20308]
Length = 551
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R + + Y ALV G GVI PL V+D R V + ++T +QV
Sbjct: 424 ERTIDKRYVALVNGNVAEDSGVIDLPL---VLDFDDKPRQMVC----YTHGKPSLTTWQV 476
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + + T L+L P TGR HQLRVHCA LG PI+GD YG + R
Sbjct: 477 LERN-NNITRLQLYPKTGRTHQLRVHCAHSLGLNMPIIGDTHYGQKADR 524
>gi|406920680|gb|EKD58701.1| hypothetical protein ACD_56C00067G0003 [uncultured bacterium]
Length = 316
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 18 SSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I V R M N + + R +++ Y A+ G + +GVI P+ K +
Sbjct: 147 TSGVIVVARNMNAFNALKENFKNRNVEKQYLAIAKGIFKEKEGVIDKPIAK---SSSYRK 203
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ NN + + + A T ++V + Y +++ P TGR HQ+R+H A + G PIVGD
Sbjct: 204 QVIARNNTKTI-IRPAETHFKVTE-EFDEYALVEVKPKTGRTHQIRIHLASI-GHPIVGD 260
Query: 134 YKYGWQTHRKWKQ 146
YG + K+
Sbjct: 261 MVYGTDVQKNAKK 273
>gi|421490625|ref|ZP_15937996.1| pseudouridine synthase, RluA family [Streptococcus anginosus
SK1138]
gi|400372886|gb|EJP25822.1| pseudouridine synthase, RluA family [Streptococcus anginosus
SK1138]
Length = 298
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFHVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|332533880|ref|ZP_08409735.1| ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036688|gb|EGI73152.1| ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas
haloplanktis ANT/505]
Length = 551
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R + + Y ALV G GVI PL V+D R V + ++T +QV
Sbjct: 424 ERTIDKRYVALVNGNVAEDSGVIDLPL---VLDFDDKPRQMVC----YTHGKPSLTTWQV 476
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + + T L+L P TGR HQLRVHCA LG PI+GD YG + R
Sbjct: 477 LERN-NNITRLQLYPKTGRTHQLRVHCAHSLGLNMPIIGDTHYGQKADR 524
>gi|239947789|ref|ZP_04699542.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922065|gb|EER22089.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 303
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 80/140 (57%), Gaps = 13/140 (9%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+++++ + Y+A+ G P + G + + + K + +IT ++++ + + A+T Y+
Sbjct: 164 KEKLVVKTYFAVTYGKPIKNVGEVRSNIEK---SKRSTPKITDIDSE---NGKLAITYYK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT---HRKWKQFHPSD 151
++KP + ++ +P+TGR HQLR+H +++LG PI+GD KYG + + K+ H ++
Sbjct: 218 LLKPLDNNLFLIEFTPVTGRMHQLRLH-SKLLGCPILGDDKYGNKEIMPYSKYMFLHANN 276
Query: 152 L---SKDSNEEIPKEKTLHF 168
+ K +EI E L F
Sbjct: 277 ICLYEKIFGKEIKLEAKLPF 296
>gi|218961736|ref|YP_001741511.1| Pseudouridylate synthase, 23S RNA-specific [Candidatus Cloacamonas
acidaminovorans]
gi|167730393|emb|CAO81305.1| Pseudouridylate synthase, 23S RNA-specific [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 351
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y+A+ G P KG I L + + K+ R V N+ ++A+T Y+
Sbjct: 173 RREIKKTYFAITTGIPEPEKGEIETYLAR----SNKNPRTICVTNE----GRYALTHYKT 224
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
IK + H + ++++P TGR HQ+RVH A + PI+GD Y + R + P ++ K
Sbjct: 225 IK-TWHYFALVEINPATGRMHQIRVHFAHI-RYPILGDLLYN--SRRYVQSLVPQNMKKK 280
Query: 156 SNE 158
E
Sbjct: 281 VTE 283
>gi|300727412|ref|ZP_07060821.1| ribosomal large chain pseudouridine synthase A [Prevotella bryantii
B14]
gi|299775292|gb|EFI71891.1| ribosomal large chain pseudouridine synthase A [Prevotella bryantii
B14]
Length = 531
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 24/157 (15%)
Query: 6 TASHVYEKCIAVSSGIITVERVMYKDNDNEKRI----LQRWYWALVVGTPRCSKGVISAP 61
T + + +SG++ V + + + +K+ +++ Y AL+ P S G++ P
Sbjct: 374 TGPMIVHRLDMATSGLLVVTKNLEAYINLQKQFAEHTIKKRYVALLEHIPDQSIGIVDLP 433
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVH 121
L ++D + ++ N + A+T+YQVI WL PLTGR HQLR+H
Sbjct: 434 LLPDIMDRPRQ-KVDKKN------GKKAITKYQVI---AQNRVWL--YPLTGRTHQLRMH 481
Query: 122 CA--EVLGTPIVGDYKYG-----WQTHRKWKQF-HPS 150
CA E L PI+GD YG H ++ +F HPS
Sbjct: 482 CAHEEGLNNPILGDNLYGKPADRLYLHAEYLEFTHPS 518
>gi|407718127|ref|YP_006795532.1| 23S RNA-specific pseudouridylate synthase [Leuconostoc carnosum
JB16]
gi|407241883|gb|AFT81533.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc carnosum
JB16]
Length = 304
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 30 KDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHA 89
KD+ N QR Y+ALV G G I+AP+ + VD K + + A
Sbjct: 160 KDHKN-----QRIYYALVRGEFTEESGTINAPIARHKVDRKKQAVQS--------GGREA 206
Query: 90 VTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+T ++V+K GYT LK+ TGR HQ+RVH + G P+VGD YG
Sbjct: 207 ITHFEVLKRYV-GYTLLKVQLETGRTHQIRVHMTYI-GHPVVGDPVYG 252
>gi|423638032|ref|ZP_17613685.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
gi|401272330|gb|EJR78324.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
Length = 297
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGKIVEREGIIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 262
>gi|386313353|ref|YP_006009518.1| RluA family pseudouridine synthase [Shewanella putrefaciens 200]
gi|319425978|gb|ADV54052.1| pseudouridine synthase, RluA family [Shewanella putrefaciens 200]
Length = 330
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G V+ PL K+ + +G +RI VN + + + TR+++++
Sbjct: 186 MQKDYLALVKGEWSAQDKVVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ- 238
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
G T +K SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 239 RYQGCTLVKASPVTGRTHQIRVHC-QFAGHPIACDDKYSEQ 278
>gi|16125533|ref|NP_420097.1| ribosomal large subunit pseudouridine synthase D [Caulobacter
crescentus CB15]
gi|221234280|ref|YP_002516716.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13422619|gb|AAK23265.1| ribosomal large subunit pseudouridine synthase D [Caulobacter
crescentus CB15]
gi|220963452|gb|ACL94808.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 270
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E + ++ Y A+V G P G+I +PL + + G+ + V D A+ A +RY+
Sbjct: 110 EAKRFRKSYLAIVAGAPEPKGGMIDSPLRRESI--GREAYMRVCEPDHP-DAETARSRYR 166
Query: 95 VIKPSCHGYTWL-KLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ + +G L +LSP TGR HQLRVH A + G P+ GD +YG
Sbjct: 167 TL--AHNGLAALVELSPDTGRMHQLRVHMASI-GRPLAGDSRYG 207
>gi|374324826|ref|YP_005077955.1| RNA pseudouridine synthase ylyb [Paenibacillus terrae HPL-003]
gi|357203835|gb|AET61732.1| RNA pseudouridine synthase ylyb [Paenibacillus terrae HPL-003]
Length = 323
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G +G + AP+G+ D+G TV + ++HAVT + VI+
Sbjct: 186 VTRKYIALVHGHLSHDQGTVDAPIGR---DSGDRKLFTVTERN----SKHAVTHFLVIE- 237
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 238 RLGDYTLLELQLETGRTHQIRVHM-KFIGHPLVGDPMYG 275
>gi|294675292|ref|YP_003575908.1| ribosomal large subunit pseudouridine synthase A [Prevotella
ruminicola 23]
gi|294472360|gb|ADE81749.1| ribosomal large subunit pseudouridine synthase A [Prevotella
ruminicola 23]
Length = 459
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 24/155 (15%)
Query: 6 TASHVYEKCIAVSSGIITV----ERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAP 61
AS + + ++SGI+ V E + N R +++ Y A+V G + GVI P
Sbjct: 287 AASMLPHRLDLMTSGIMLVAKTPEAYHHLQNQFAARTIKKKYLAVVEGEIQQPHGVIDLP 346
Query: 62 LGKVVVDNGKSDRITVVNNDQIMSAQH---AVTRYQVI----KPSCH-GYTWLKLSPLTG 113
L SD + QI+ +H A+T Y+V+ P+ H T L L P TG
Sbjct: 347 LS--------SDPMN--RPCQIVDYEHGKRAITEYRVLDRQQSPTTHRPVTLLALYPHTG 396
Query: 114 RKHQLRVHCA--EVLGTPIVGDYKYGWQTHRKWKQ 146
R HQLR+HCA E LG PI+GD YG + R + Q
Sbjct: 397 RTHQLRMHCAHQEGLGCPILGDELYGHKADRLYLQ 431
>gi|304407496|ref|ZP_07389148.1| pseudouridine synthase, RluA family [Paenibacillus curdlanolyticus
YK9]
gi|304343447|gb|EFM09289.1| pseudouridine synthase, RluA family [Paenibacillus curdlanolyticus
YK9]
Length = 308
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D ++ ++R Y A V G +GVI AP+G+ DR I + HAV
Sbjct: 160 DEAMRQKTIERVYLAFVQGKISKPRGVIDAPIGR--------DRHQPARRRVIANGDHAV 211
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
TRY+ ++ T +++ TGR HQ+RVH + LG P++GD YG T
Sbjct: 212 TRYETMERYSKA-TLVRIRLETGRTHQIRVHMSH-LGHPLIGDSLYGGDT 259
>gi|205373291|ref|ZP_03226095.1| YlyB [Bacillus coahuilensis m4-4]
Length = 301
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV G + G I AP+G+ D+ +T+V+ +HAVT ++V K
Sbjct: 168 RKYMALVHGVIQHDYGTIDAPIGR---DSKDRQSMTIVD-----QGKHAVTHFEV-KDRF 218
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++ TGR HQ+RVH + +G P+VGD KYG
Sbjct: 219 EQYTLVECQLETGRTHQIRVHM-KYIGFPLVGDPKYG 254
>gi|409437905|ref|ZP_11265004.1| 23S rRNA pseudouridine synthase [Rhizobium mesoamericanum STM3625]
gi|408750371|emb|CCM76164.1| 23S rRNA pseudouridine synthase [Rhizobium mesoamericanum STM3625]
Length = 316
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G I+APLG+ D + V A A+T Y+V++
Sbjct: 153 LERAYQAIVWGRPRSLTGTINAPLGRAFGDRTRR----AVRRPGTQDADEAITHYEVLER 208
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYG 137
L+ L TGR HQ+RVH A + G P++GD YG
Sbjct: 209 FHENPDATSLASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYG 252
>gi|347971826|ref|XP_313685.5| AGAP004401-PA [Anopheles gambiae str. PEST]
gi|333469046|gb|EAA09234.6| AGAP004401-PA [Anopheles gambiae str. PEST]
Length = 299
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E++ +++Y AL+ G + VI +GK +D K T++ ++ + + ++T+
Sbjct: 134 EEQRARKYYLALLRGHTDFDEEVIDIAIGKTAIDTSKK-MCTILEDELCQNPRRSITKVL 192
Query: 95 VIKPSCHG---YTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
V+ + T + L P+TGR+HQLR+HC+++ G IVGDY Y +
Sbjct: 193 VLDRGYYNGKPVTKVLLRPITGRRHQLRLHCSQI-GHVIVGDYTYSLK 239
>gi|120599252|ref|YP_963826.1| RluA family pseudouridine synthase [Shewanella sp. W3-18-1]
gi|146292674|ref|YP_001183098.1| RluA family pseudouridine synthase [Shewanella putrefaciens CN-32]
gi|120559345|gb|ABM25272.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
W3-18-1]
gi|145564364|gb|ABP75299.1| ribosomal large subunit pseudouridine synthase C [Shewanella
putrefaciens CN-32]
Length = 330
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G V+ PL K+ + +G +RI VN + + + TR+++++
Sbjct: 186 MQKDYLALVKGEWSAQDKVVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIMQ- 238
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
G T +K SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 239 RYQGCTLVKASPVTGRTHQIRVHC-QFAGHPIACDDKYSEQ 278
>gi|359449676|ref|ZP_09239160.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20480]
gi|358044472|dbj|GAA75409.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20480]
Length = 259
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G G I PL D R V + A+T +QV
Sbjct: 132 ERTIEKRYVALVDGNIEQESGTIELPL---TPDFDDKPRQKVC----YQKGKPALTTWQV 184
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
++ + T L+L P TGR HQLRVHCA VLG TPI+GD YG + R
Sbjct: 185 LE-RKNNTTRLQLYPKTGRTHQLRVHCAHVLGLNTPIIGDTHYGKKADR 232
>gi|209525222|ref|ZP_03273765.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|423067859|ref|ZP_17056649.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
gi|209494407|gb|EDZ94719.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|406710602|gb|EKD05809.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
Length = 308
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y ++ G P+ + GVI P+G+ SDR + Q + A+T ++
Sbjct: 163 QAKTARRQYLGIIYGVPKTTSGVIDQPIGR-----HPSDRQKMAIVPQHQGGRSAITHWK 217
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V K YT ++ TGR HQ+RVH A +G PIVGD YG
Sbjct: 218 V-KERLGNYTLIEFELETGRTHQIRVHSAS-MGHPIVGDRVYG 258
>gi|421593555|ref|ZP_16038104.1| pseudouridine synthase [Rhizobium sp. Pop5]
gi|403700490|gb|EJZ17642.1| pseudouridine synthase [Rhizobium sp. Pop5]
Length = 341
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G + APLG+ D + V A A+T Y+VI
Sbjct: 181 LERAYQAVVWGRPRTLTGTVDAPLGRSTGDRTRR----AVKRPDSHDADEAITHYEVIER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
KP L L TGR HQ+RVH A + G P++GD YG R P D+
Sbjct: 237 FQEKPDATALASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYG-AGFRTKANLLPEDI 294
Query: 153 SKDSN 157
K N
Sbjct: 295 RKVVN 299
>gi|420155633|ref|ZP_14662491.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
gi|394758862|gb|EJF41698.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
Length = 308
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
R Y A+V G R G + AP+G+ D K +TV + ++ AVT YQV++
Sbjct: 168 FTREYEAVVYGHLREQSGTVDAPIGRHPTDRKK---MTVTQKN----SRRAVTHYQVLE- 219
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G+++++L TGR HQ+RVH A LG P+ GD YG
Sbjct: 220 ELPGFSYVRLRLETGRTHQIRVHMA-YLGHPVAGDPVYG 257
>gi|308069860|ref|YP_003871465.1| RNA pseudouridine synthase (RNA-uridine isomerase) [Paenibacillus
polymyxa E681]
gi|305859139|gb|ADM70927.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Paenibacillus polymyxa E681]
Length = 334
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G +G + AP+G+ D+G TV + ++HAVT + VI+
Sbjct: 197 VTRKYIALVHGHLSHDQGTVDAPIGR---DSGDRKLFTVTERN----SKHAVTHFLVIE- 248
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 249 RLGDYTLLELQLETGRTHQIRVHM-KFIGHPLVGDPMYG 286
>gi|75759795|ref|ZP_00739872.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218896239|ref|YP_002444650.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|74492695|gb|EAO55834.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218543847|gb|ACK96241.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
Length = 275
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 138 HQQKAVKRTYEAIVHGEMVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 189
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 190 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDNLYGGRRDEMKRQ 240
>gi|418962916|ref|ZP_13514765.1| pseudouridine synthase, RluA family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383344892|gb|EID23042.1| pseudouridine synthase, RluA family [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 298
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|150397811|ref|YP_001328278.1| RluA family pseudouridine synthase [Sinorhizobium medicae WSM419]
gi|150029326|gb|ABR61443.1| pseudouridine synthase, RluA family [Sinorhizobium medicae WSM419]
Length = 343
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRIT-VVNNDQIMSAQHAVTRYQVI- 96
L+R Y A+V G PR KG I APLG+ DR V D A+ A+T Y+V+
Sbjct: 181 LERAYRAVVWGRPRQLKGTIDAPLGRA------GDRTKRAVKRDDSDDAREAITHYEVVD 234
Query: 97 ----KPSCHGY-TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSD 151
KP + ++ TGR HQ+RVH A + G P++GD YG K +
Sbjct: 235 RYHEKPDGTSLASAVECHLETGRTHQIRVHMAHI-GHPLIGDPDYGAAFRTKANLL--PE 291
Query: 152 LSKDSNEEIPKEKTLHFGLDLESGSILE 179
++ + P++ F L E S E
Sbjct: 292 PARTAVNRFPRQALHAFMLQFEHPSTGE 319
>gi|345491180|ref|XP_001607742.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
1-like [Nasonia vitripennis]
Length = 273
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+R ++++Y ALV G VI P+G V + + ++ ++D A+ + T
Sbjct: 102 EERTVRKYYLALVHGHIDKYSMVIDIPIGHDVRELNGNRKMCTKDDDFCEKARKSCTALL 161
Query: 95 VIKPSCHGY------TWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRK 143
V++ GY T + L P TGR+HQLRVHCA + G IVGDY Y +T K
Sbjct: 162 VLEK---GYIDDRPVTKVLLYPKTGRRHQLRVHCAHI-GHIIVGDYTYSGKTDTK 212
>gi|218902402|ref|YP_002450236.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|218537046|gb|ACK89444.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
Length = 292
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y ALV G +G I AP+G+ KSD +++ Q A+T +
Sbjct: 155 HQQKAVKRTYEALVHGEMIEQEGTIDAPIGR------KSD--SIIERTVCEEGQRAITHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR-KWKQFHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + K + H + L
Sbjct: 207 RVIASANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDTLYGGKRDEVKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|414158276|ref|ZP_11414570.1| RluA family pseudouridine synthase [Streptococcus sp. F0441]
gi|410870821|gb|EKS18778.1| RluA family pseudouridine synthase [Streptococcus sp. F0441]
Length = 296
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPAVTRFHVLE-RF 212
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 213 GDYTLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|196231266|ref|ZP_03130125.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
gi|196224602|gb|EDY19113.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
Length = 289
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
++ Y A++ G+ KG + L + +D V++ + + +HAVT Y+V+K
Sbjct: 160 EKRYQAVIEGSLPNDKGTFRSYLDE-------TDPFRVISVPRTPTTRHAVTHYRVLK-R 211
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
G T ++L+ TGR+HQ+RVH A+ G PIVGD KYG +T+
Sbjct: 212 GKGRTLVELTLETGRRHQIRVHLADA-GCPIVGDKKYGAKTN 252
>gi|251797854|ref|YP_003012585.1| pseudouridine synthase [Paenibacillus sp. JDR-2]
gi|247545480|gb|ACT02499.1| pseudouridine synthase, RluA family [Paenibacillus sp. JDR-2]
Length = 315
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G +G I AP+G+ ++DR D+ +++HAVT + V++
Sbjct: 177 VSRKYIALVHGNLPHDQGTIDAPIGR-----DQNDRKLFTVTDR--NSKHAVTHFAVLER 229
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++L TGR HQ+RVH + +G P+ GD YG
Sbjct: 230 IADDYTIVELQLETGRTHQIRVHM-KYIGYPLAGDPMYG 267
>gi|149911608|ref|ZP_01900220.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
gi|149805329|gb|EDM65342.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
Length = 317
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 10/102 (9%)
Query: 37 RILQRWYWALVVGT-PRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+ +++ Y ALV G PR S+ +++APL K V +G +R+ V+++ + + TR+ +
Sbjct: 171 KTMRKDYQALVAGAWPRSSR-IVNAPLLKNTVSSG--ERLVRVDSE----GKESQTRFSI 223
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
I+ HG T ++ SP+TGR HQ+RVH G PI D KYG
Sbjct: 224 IQRYEHG-TLVQASPITGRTHQIRVHALHA-GHPIACDDKYG 263
>gi|47568408|ref|ZP_00239109.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus G9241]
gi|47554956|gb|EAL13306.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus G9241]
Length = 297
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 15/150 (10%)
Query: 9 HVYEKCIAVSSGIITV--ERVMYK--DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGK 64
H+ + +SG++ + R M+ ++++ ++R Y A+V G +G I AP+G+
Sbjct: 131 HIVTRLDRDTSGLMLIAKNRFMHHLLSKQHQQKAVKRTYEAIVHGEMVEREGTIDAPIGR 190
Query: 65 VVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAE 124
KSD +++ Q AVT ++VI + H T + L TGR HQ+RVH A
Sbjct: 191 ------KSD--SIIERTVCEEGQRAVTHFRVIDSANHK-THVSLELDTGRTHQIRVHMAH 241
Query: 125 VLGTPIVGDYKYGWQTHRKWKQ-FHPSDLS 153
+ G P++GD YG + +Q H + L+
Sbjct: 242 I-GHPLLGDNLYGGKRDEMKRQALHSTSLT 270
>gi|407768788|ref|ZP_11116166.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407288472|gb|EKF13950.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 269
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
++++ + YWA+V G G I AP+GK N +S +V+ D Q + T Y+V
Sbjct: 88 EKLIGKTYWAVVRGAVADDHGFIDAPIGKT---NDESGWRMLVHED----GQPSKTEYRV 140
Query: 96 I----KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ + TWL L+P TGR HQLRVH + G P++GD YG
Sbjct: 141 LGRGKDEAGDDITWLALTPHTGRTHQLRVHLDHI-GHPVLGDPFYG 185
>gi|359457301|ref|ZP_09245864.1| RluA family pseudouridine synthase [Acaryochloris sp. CCMEE 5410]
Length = 328
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 23 TVERVMYKDNDNEKRILQ---------RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
T VM D + LQ R Y LV G P G + P+G+ +SD
Sbjct: 145 TTGAVMVAKTDQAHQHLQAQIAAKTALREYVGLVYGRPSALTGRMEFPIGR-----HRSD 199
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
RI + + AVT +Q+++P Y +K TGR HQ+RVHCA+ +G PIVGD
Sbjct: 200 RIKMAVVPVEQGGKAAVTHWQILQP-LGNYALVKFRLETGRTHQIRVHCAQ-MGWPIVGD 257
Query: 134 YKY 136
Y
Sbjct: 258 PLY 260
>gi|359431784|ref|ZP_09222200.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20652]
gi|357921582|dbj|GAA58449.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20652]
Length = 551
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVTR 92
+R + + Y ALV G GVI PL V+D R Q++ +H ++T
Sbjct: 424 ERTIDKRYVALVNGNVAEDSGVIDLPL---VLDFDDKPR-------QMVCYKHGKPSLTT 473
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
+QV+ + + T L+L P TGR HQLRVHCA LG PIVGD YG + R
Sbjct: 474 WQVLDRN-NNITRLQLYPKTGRTHQLRVHCAHSLGLNMPIVGDTHYGKKADR 524
>gi|424827321|ref|ZP_18252130.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
gi|365980244|gb|EHN16280.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
Length = 305
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + ++AVT Y+VI+
Sbjct: 166 ISRVYMALVEGIIKNEQGTIEAPIGRHPVDRIK---MAVVKD-----GRYAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECKLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|87311869|ref|ZP_01093981.1| putative 23S rRNA pseudouridine synthase [Blastopirellula marina
DSM 3645]
gi|87285400|gb|EAQ77322.1| putative 23S rRNA pseudouridine synthase [Blastopirellula marina
DSM 3645]
Length = 250
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 19 SGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
SG++T R + E R++++ YWA V G P +GV P+ K + D ++
Sbjct: 69 SGVLTFARNVRAARRISQQFETRLVRKLYWAFVAGQPPDDQGVWEDPIRK-IPDVAMAEI 127
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
++ + A+ A +Y+V++ + G WL++ TGR HQ+RV CA G PI+GD
Sbjct: 128 VSPSDP----GARWAKLKYEVLQRTEQG-AWLEIELDTGRYHQIRVQCAS-RGFPILGDV 181
Query: 135 KYG 137
YG
Sbjct: 182 SYG 184
>gi|302346005|ref|YP_003814358.1| pseudouridine synthase, RluA family [Prevotella melaninogenica ATCC
25845]
gi|302149550|gb|ADK95812.1| pseudouridine synthase, RluA family [Prevotella melaninogenica ATCC
25845]
Length = 571
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 89 AVTRYQVIKPSCHGYTWLK-----LSPLTGRKHQLRVHCA--EVLGTPIVGDYKYGWQTH 141
A+T Y++I + +G L+ L PLTGR HQLRVHCA + LGTPI+GD YG +
Sbjct: 486 AITEYRLIGKTTYGKEALEAVKIALYPLTGRTHQLRVHCAHPDGLGTPIIGDNLYGQRAE 545
Query: 142 RKW 144
R W
Sbjct: 546 RLW 548
>gi|117921007|ref|YP_870199.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
gi|117613339|gb|ABK48793.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
Length = 329
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G V+ PL K+ + +G +RI VN + + + TR+++++
Sbjct: 185 MQKDYLALVKGEWSAQDKVVKQPLLKLTLKSG--ERIVRVNAE----GKPSETRFKIVQ- 237
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
G T ++ SP+TGR HQ+RVHC + +G PI D KY Q
Sbjct: 238 RYQGCTLVQASPVTGRTHQIRVHC-QYMGHPIACDEKYSEQA 278
>gi|372221138|ref|ZP_09499559.1| ribosomal large subunit pseudouridine synthase A [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 551
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVD--NGKSDRITVVNNDQIMSAQHAVTRYQ 94
R + + Y A++ ++G I PL ++D N ++ + +HA+T Y+
Sbjct: 423 RTIHKTYVAILDRAIAVTQGKIELPL---ILDIYNRPMQKVDA------LYGKHALTHYE 473
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHRKW 144
V+K + T +KL+P+TGR HQLRVHCA LG PI GD YG R +
Sbjct: 474 VLK-TTKTQTLIKLNPVTGRSHQLRVHCAHKLGLHAPIAGDNLYGTPLDRLY 524
>gi|408377786|ref|ZP_11175387.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Agrobacterium albertimagni AOL15]
gi|407748777|gb|EKF60292.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Agrobacterium albertimagni AOL15]
Length = 342
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 79/204 (38%), Gaps = 49/204 (24%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI-- 96
L+R Y A+V G PR G I A LG+ D K V + A+ A+T Y V+
Sbjct: 181 LERAYRAVVWGRPRTLAGTIDAALGRSGADRTKR----TVKREDTDDAREAITHYTVLER 236
Query: 97 ---KPSCHGYTWLKLSPL-TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
KP L L TGR HQ+RVH A + G P+VGD +YG K P D
Sbjct: 237 YGEKPDASCLASLVECRLETGRTHQIRVHMAHI-GNPLVGDQEYGAAFKTKANLL-PEDA 294
Query: 153 SKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVS 212
+ N+ +Q LH + P
Sbjct: 295 KRAVNK-------------------FHRQA-LHAYLLAFEHPTTG--------------- 319
Query: 213 KLETLKLVAPLPSHMQRSWDVLNS 236
ET++ AP+P+ +Q+ D L +
Sbjct: 320 --ETMRFEAPIPADLQKVIDALKA 341
>gi|422860241|ref|ZP_16906885.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK330]
gi|327470139|gb|EGF15603.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK330]
Length = 298
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D +K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKDKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ ++ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDFSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|239631456|ref|ZP_04674487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980747|ref|ZP_12621427.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|417984062|ref|ZP_12624690.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
gi|239525921|gb|EEQ64922.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525070|gb|EKP99977.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|410526714|gb|EKQ01596.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
Length = 306
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVHGTFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFE 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTFIKCILETGRTHQIRVHMA-YIHHPVAGDPLYG 250
>gi|417989705|ref|ZP_12630206.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|417996323|ref|ZP_12636604.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|418015330|ref|ZP_12654905.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
gi|410535634|gb|EKQ10251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|410537450|gb|EKQ12024.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|410551806|gb|EKQ25849.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
Length = 306
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVRGTFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFE 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTFIKCILETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|410663355|ref|YP_006915726.1| pseudouridine synthase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025712|gb|AFU97996.1| pseudouridine synthase [Simiduia agarivorans SA1 = DSM 21679]
Length = 214
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 22/153 (14%)
Query: 18 SSGIITVERVMYKDNDNEK----RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG++ + R + + +K R +Q+ Y A+ G + G I PLG DN
Sbjct: 67 TSGLLLLARTKQAERELKKQLQARQIQKTYEAIAQGELKQDTGEIREPLGPQT-DNPPFQ 125
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+++ + + A+TRY+V+ +G T L L P TGR HQLRVH A LG P++GD
Sbjct: 126 QVSA-------NGKTALTRYRVLA-RANGNTRLALYPHTGRTHQLRVHMA-WLGHPLLGD 176
Query: 134 YKYGWQT-------HRKWKQF-HPSDLSKDSNE 158
YG H + Q HP+D++ S E
Sbjct: 177 AFYGRAESYTRLCLHARALQLNHPTDMTPLSLE 209
>gi|228899885|ref|ZP_04064130.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis IBL 4222]
gi|228964251|ref|ZP_04125371.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228795446|gb|EEM42933.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228859789|gb|EEN04204.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis IBL 4222]
Length = 292
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 207 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDNLYGGRRDEMKRQ 257
>gi|210612741|ref|ZP_03289456.1| hypothetical protein CLONEX_01658 [Clostridium nexile DSM 1787]
gi|210151434|gb|EEA82442.1| hypothetical protein CLONEX_01658 [Clostridium nexile DSM 1787]
Length = 305
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+QR Y A+V G + +G I AP+G+ ++ K VN + +HAVT Y+VI+
Sbjct: 166 IQRIYHAIVHGVIKEDEGTIDAPIGRHPIERKKMS----VN---YKNGKHAVTHYKVIE- 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT++K TGR HQ+RVH A + P++GD YG
Sbjct: 218 RFKNYTYIKCRLETGRTHQIRVHMAHIR-HPLLGDAVYG 255
>gi|121534815|ref|ZP_01666635.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121306610|gb|EAX47532.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 301
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 4 SITASHVYEKCIAVSSGIITVER---VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISA 60
++ A H + +SG++ + + + + + + L+R Y A+V G P G I A
Sbjct: 119 ALGAFHPIHRLDRNTSGLVAIAKHPHIQHALSGGGAKGLKRLYLAVVTGIPSSLMGRIDA 178
Query: 61 PLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRV 120
P+G+ + S VV +D Q A+T Y+V+ + + ++L LTGR HQ+RV
Sbjct: 179 PIGR----HPNSIIKRVVRSD----GQPAITLYRVLS-TFSMASLVELELLTGRTHQIRV 229
Query: 121 HCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDLS 153
H + + G P++GD YG T +Q H + LS
Sbjct: 230 HLSHI-GHPLLGDDLYGGATDLIRRQALHAASLS 262
>gi|405980842|ref|ZP_11039171.1| RluA family pseudouridine synthase [Actinomyces neuii BVS029A5]
gi|404392861|gb|EJZ87918.1| RluA family pseudouridine synthase [Actinomyces neuii BVS029A5]
Length = 304
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 32 NDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVT 91
N R +++ Y ALV G P S G + AP+G+ G+ ++ VV ++ AVT
Sbjct: 158 NAFRYRKVKKIYHALVSGHPDPSSGTVEAPIGR---HPGREFKMGVVEGGKM-----AVT 209
Query: 92 RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Y I+ + G + L++ TGR HQ+RVH + +G PIVGD YG
Sbjct: 210 HYDTIE-AMPGASLLRVHLETGRTHQIRVHM-QAIGHPIVGDPTYG 253
>gi|390453155|ref|ZP_10238683.1| RNA pseudouridine synthase ylyb [Paenibacillus peoriae KCTC 3763]
Length = 323
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G +G + AP+G+ D+G TV + ++HAVT + VI+
Sbjct: 186 VTRKYIALVHGHLSHDQGTVDAPIGR---DSGDRKLFTVTERN----SKHAVTHFLVIE- 237
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT L+L TGR HQ+RVH + +G P+VGD YG
Sbjct: 238 RLGDYTLLELQLETGRTHQIRVHM-KFIGHPLVGDPMYG 275
>gi|366085944|ref|ZP_09452429.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus zeae KCTC
3804]
Length = 306
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVHGTFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFA 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT +K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTLIKCVLETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|325184958|emb|CCA19450.1| ribosomal large subunit pseudouridine synthase C pu [Albugo
laibachii Nc14]
Length = 344
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 12/69 (17%)
Query: 81 DQIMSAQHAVTRYQVIKPSCHGYTWLKLS------------PLTGRKHQLRVHCAEVLGT 128
+ ++ + A+T Y+VI P T KLS P+TGRKHQ+R+HCA +L
Sbjct: 230 ESVIEGKEAITMYKVIDPVSREITLAKLSFEFPQGKCLKVWPITGRKHQIRIHCATILHA 289
Query: 129 PIVGDYKYG 137
PI+GD +YG
Sbjct: 290 PILGDGRYG 298
>gi|402561709|ref|YP_006604433.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis HD-771]
gi|423361271|ref|ZP_17338773.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|423564413|ref|ZP_17540689.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
gi|434374248|ref|YP_006608892.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis HD-789]
gi|401080376|gb|EJP88665.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|401196546|gb|EJR03486.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
gi|401790361|gb|AFQ16400.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis HD-771]
gi|401872805|gb|AFQ24972.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis HD-789]
Length = 297
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDNLYGGRRDEMKRQ 262
>gi|423643644|ref|ZP_17619262.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|401272856|gb|EJR78845.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
Length = 297
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A V G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHV-GHPLLGDSLYGGRRDEMKRQ 262
>gi|302035759|ref|YP_003796081.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
gi|300603823|emb|CBK40155.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
Length = 320
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E+ + R Y ALVVG P S+G I A LG D R + Q + + AVT Y+
Sbjct: 158 ERHSITRQYEALVVGVPAQSEGRIEAALGP---DRHHPKRTST----QTLQPKPAVTDYR 210
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
V + L LSP TGR HQ+R H V+G PI+GD YG +
Sbjct: 211 VEEVFDKVAARLVLSPHTGRTHQIRAHL-HVIGHPILGDRSYGGE 254
>gi|196036248|ref|ZP_03103647.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|195991223|gb|EDX55192.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
Length = 297
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|194334247|ref|YP_002016107.1| RluA family pseudouridine synthase [Prosthecochloris aestuarii DSM
271]
gi|194312065|gb|ACF46460.1| pseudouridine synthase, RluA family [Prosthecochloris aestuarii DSM
271]
Length = 347
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 42/191 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ Y A+V G P + G+I +G+ V ++ ++ + + A+T Y+V
Sbjct: 185 RQVEKKYQAIVWGVPEPATGLIKTNIGRSV----RNRKVMTSYPFEGKDGKTAITEYRVQ 240
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDS 156
+ C+ ++ ++++ TGR HQ+RVH LG PI+GD YG + R
Sbjct: 241 QSLCY-FSLVEVTLHTGRTHQIRVHMQH-LGHPILGDETYGGSSIRN------------- 285
Query: 157 NEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLET 216
+P K+ F +L LE PR LH + +T Q ++G E
Sbjct: 286 ---LPFSKSESFVKNL-----LETIPRQALHAESLTF---------TQPTTG------ER 322
Query: 217 LKLVAPLPSHM 227
L APLP M
Sbjct: 323 LSFTAPLPEDM 333
>gi|421076497|ref|ZP_15537482.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392525409|gb|EIW48550.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 294
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 18 SSGIITVER---VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDR 74
+SG++ + + + + + N + + R Y AL G + ++G I AP+ + D
Sbjct: 133 TSGLVLIAKYPHIQHLLSFNGAKNINRQYIALTTGIIKPAEGTIDAPIAR------HPDS 186
Query: 75 ITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDY 134
I D QHA T YQV++P + + ++L+ LTGR HQ+RVH + LG PI+GD
Sbjct: 187 IIQRIIDP--KGQHATTCYQVLRPLINA-SIVQLTLLTGRTHQIRVHLSH-LGHPIIGDD 242
Query: 135 KYG 137
YG
Sbjct: 243 LYG 245
>gi|329113807|ref|ZP_08242578.1| Putative RNA pseudouridine synthase [Acetobacter pomorum DM001]
gi|326696817|gb|EGE48487.1| Putative RNA pseudouridine synthase [Acetobacter pomorum DM001]
Length = 206
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+A++ + + ++ + Q+ YWA+V P+ + G I PL K G
Sbjct: 46 CLAIA---LRKQPLLALQQAFATKTAQKIYWAVVQTGPQANTGRIDLPLEKQSSKKG--- 99
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
+V + S HA T+++V+ S G WL+L+ TGR HQ RVHCA +G PI+GD
Sbjct: 100 -WQMVASP---SGTHAATKWKVLGRS-KGVCWLELTLETGRTHQARVHCA-AMGWPIIGD 153
Query: 134 YKYG 137
YG
Sbjct: 154 PLYG 157
>gi|229090249|ref|ZP_04221495.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
Rock3-42]
gi|228693095|gb|EEL46810.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
Rock3-42]
Length = 292
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVINSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|384174607|ref|YP_005555992.1| pseudouridine synthase YjbO [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349593831|gb|AEP90018.1| pseudouridine synthase YjbO [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 302
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 31 DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 90
D EK+ L+R Y A+ G R KG I++P+G+ DR Q AV
Sbjct: 158 DQQLEKKTLKRTYTAIAEGKLRTKKGTINSPIGR--------DRSHPTRRRVSPGGQTAV 209
Query: 91 TRYQVIKPSC-HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
T ++V+ + + ++L TGR HQ+RVH A LG P+ GD YG + R +Q
Sbjct: 210 THFKVMASNAKERLSLVELELETGRTHQIRVHLAS-LGHPLTGDSLYGGGSKRLNRQ 265
>gi|153953824|ref|YP_001394589.1| pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219854440|ref|YP_002471562.1| hypothetical protein CKR_1097 [Clostridium kluyveri NBRC 12016]
gi|146346705|gb|EDK33241.1| Predicted pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219568164|dbj|BAH06148.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 305
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + KG + P+G+ K D+I + + + AVT Y+VIK
Sbjct: 167 MTREYIALVEGIIKEEKGSLDKPIGR-----HKKDKIKMA---VVEGGKRAVTHYEVIK- 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
YT +K TGR HQ+RVH LG P+VGD YG++ +
Sbjct: 218 RFKEYTLVKCILETGRTHQIRVHMC-YLGHPVVGDPVYGYKKQK 260
>gi|189346997|ref|YP_001943526.1| RluA family pseudouridine synthase [Chlorobium limicola DSM 245]
gi|189341144|gb|ACD90547.1| pseudouridine synthase, RluA family [Chlorobium limicola DSM 245]
Length = 354
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 44/201 (21%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNND-QIMSAQHAVTRYQV 95
R +Q+ Y A+V G P G I +G+ K +R + N + + +HA+T Y +
Sbjct: 189 RQVQKIYKAIVWGVPDPRSGTILTNIGR-----SKKNRKIMANYPYEGLDGKHAITDY-L 242
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKD 155
++ + H ++ + L+ TGR HQ+R H G PI+GD YG R
Sbjct: 243 VEENLHWFSVVSLTLHTGRTHQIRAHMQHT-GNPILGDETYGGTVIRT------------ 289
Query: 156 SNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLE 215
+P K+ F +L LE PR LH + ++ + E
Sbjct: 290 ----LPFSKSESFVTNL-----LEIMPRQALHAETLSF---------------SQPTTHE 325
Query: 216 TLKLVAPLPSHMQRSWDVLNS 236
L +PLP+ MQR+ + + S
Sbjct: 326 KLTFSSPLPTDMQRTLEKIRS 346
>gi|440684013|ref|YP_007158808.1| pseudouridine synthase [Anabaena cylindrica PCC 7122]
gi|428681132|gb|AFZ59898.1| pseudouridine synthase [Anabaena cylindrica PCC 7122]
Length = 581
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 18 SSGIITVERVMYK----DNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + + ++ EKR + + Y A++ G+ ++GVI PL K +
Sbjct: 423 TSGILLLAKNLFTYSQLSQQFEKRQIHKVYEAILAGSLAIAEGVIDLPLWK-------NP 475
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV--LGTPIV 131
++ + + ++TR++V+ YT ++ PLTGR HQLRVH A+V LG I+
Sbjct: 476 EQSLYQKVDLERGKPSLTRFRVMG-KVGDYTRVEFIPLTGRTHQLRVHAADVRGLGIAIL 534
Query: 132 GDYKYGWQTHRKWKQFHPSDLS 153
GD YG H +LS
Sbjct: 535 GDRLYGCNIDACRLYLHARELS 556
>gi|225019500|ref|ZP_03708692.1| hypothetical protein CLOSTMETH_03453 [Clostridium methylpentosum
DSM 5476]
gi|224947721|gb|EEG28930.1| hypothetical protein CLOSTMETH_03453 [Clostridium methylpentosum
DSM 5476]
Length = 299
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+R Y+A+V G P + G I P+G+ +V+ AVT Y+ ++
Sbjct: 163 FERIYYAVVCGAPSPAAGTIDLPIGRTPG--------SVLKRRVDPQGARAVTHYETVRV 214
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
+ YT LK+ TGR HQ+RVH A LG P+ GD+ YG +
Sbjct: 215 NG-AYTLLKIRLETGRTHQIRVHFAH-LGCPLFGDFLYGTE 253
>gi|422826249|ref|ZP_16874428.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK678]
gi|324995685|gb|EGC27597.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK678]
Length = 298
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R YWA+V G +GVI AP+G+ D K +T + A+TR+QV++
Sbjct: 164 RKYWAIVHGNLPNDRGVIEAPIGRSEKDR-KKQAVTA-------KGKPALTRFQVLE-RF 214
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 215 GDYSLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 261
>gi|228913878|ref|ZP_04077503.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228845817|gb|EEM90843.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 292
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHLAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|218234328|ref|YP_002365988.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|423588303|ref|ZP_17564390.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|218162285|gb|ACK62277.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|401226288|gb|EJR32828.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
Length = 297
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A V G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHV-GHPLLGDSLYGGRRDEMKRQ 262
>gi|149173826|ref|ZP_01852455.1| ribosomal large subunit pseudouridine synthase [Planctomyces maris
DSM 8797]
gi|148847356|gb|EDL61690.1| ribosomal large subunit pseudouridine synthase [Planctomyces maris
DSM 8797]
Length = 342
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 51/226 (22%)
Query: 18 SSGIITVERVMYKDND--------NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDN 69
+SGI+ V KDN EKR +Q+ Y A+V G I + V
Sbjct: 154 TSGIMVVA----KDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYIDTFM---CVHP 206
Query: 70 GKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTP 129
+++ V D+ +A++A T Y+VI+ +T+++L P TGR HQLRVH + G
Sbjct: 207 RAREKMIVC--DEGGNARNAFTYYEVIE-RYQAFTYVRLKPRTGRTHQLRVHMQHI-GHS 262
Query: 130 IVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCK 189
IV D YG K K + +++ +LES ++E+Q LH +C
Sbjct: 263 IVADRVYGGHKSLKMKSL---GIQAEAD-----------AAELESDVLIERQA-LHAYCL 307
Query: 190 EMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 235
E P SG + +K APLP MQ + L+
Sbjct: 308 EFFHPQ-----------SG------KPMKFEAPLPEDMQNTLAALD 336
>gi|134301061|ref|YP_001114557.1| RluA family pseudouridine synthase [Desulfotomaculum reducens MI-1]
gi|134053761|gb|ABO51732.1| pseudouridine synthase, RluA family [Desulfotomaculum reducens
MI-1]
Length = 320
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMS-AQHAVTRY 93
++R L+R YWALV G G I AP+G ++ N I + ++T Y
Sbjct: 181 KERTLKRTYWALVKGIVHPPSGTIDAPIGP---------HPSLANRRAINEHGEQSITHY 231
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
Q ++ S + LKL+ TGR HQ+R+H A LG PI+GD YG
Sbjct: 232 QTLR-SFPEISLLKLNLDTGRTHQIRLHLAH-LGYPIIGDRMYG 273
>gi|418008048|ref|ZP_12647919.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
gi|410547807|gb|EKQ22033.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
Length = 306
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVHGTFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFE 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTFIKCILETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|310828904|ref|YP_003961261.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
limosum KIST612]
gi|308740638|gb|ADO38298.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
limosum KIST612]
Length = 307
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G ++G I P+G+ D R+ VV + ++ AVT ++ +K
Sbjct: 166 ITRQYKALVKGIMENNRGTIDMPIGRHPKDR---VRMAVVKEN----SKEAVTHFETLKR 218
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWK 145
GYT ++ TGR HQ+RVH + +G PI GD Y +K
Sbjct: 219 YAEGYTLMQFRLETGRTHQIRVHM-QAIGYPIAGDPLYKGDKKNPFK 264
>gi|229183506|ref|ZP_04310730.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
BGSC 6E1]
gi|228599916|gb|EEK57512.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
BGSC 6E1]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|417992968|ref|ZP_12633319.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
gi|410532377|gb|EKQ07085.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
Length = 291
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVRGTFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFE 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTFIKCILETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|228932580|ref|ZP_04095460.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228827098|gb|EEM72852.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIGAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|228984376|ref|ZP_04144555.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228775345|gb|EEM23732.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANH-KTHVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|187779872|ref|ZP_02996345.1| hypothetical protein CLOSPO_03468 [Clostridium sporogenes ATCC
15579]
gi|187773497|gb|EDU37299.1| pseudouridine synthase, RluA family [Clostridium sporogenes ATCC
15579]
Length = 305
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+ R Y ALV G + +G I AP+G+ VD K + VV + ++AVT Y+VI+
Sbjct: 166 ISRVYMALVEGIIKDGQGTIEAPIGRHPVDRIK---MAVVKD-----GRYAVTHYKVIE- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
+T ++ TGR HQ+RVH + ++ P+VGD YG++ R
Sbjct: 217 RFKNHTLVECKLETGRTHQIRVHMSHIM-HPLVGDPVYGYKKQR 259
>gi|118476779|ref|YP_893930.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|196044122|ref|ZP_03111358.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|225863156|ref|YP_002748534.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|376265133|ref|YP_005117845.1| putative ribosomal large subunit pseudouridine synthase [Bacillus
cereus F837/76]
gi|118416004|gb|ABK84423.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|196024761|gb|EDX63432.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|225788401|gb|ACO28618.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|364510933|gb|AEW54332.1| putative ribosomal large subunit pseudouridine synthase [Bacillus
cereus F837/76]
Length = 297
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|49477132|ref|YP_035440.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49328688|gb|AAT59334.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 297
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|376005278|ref|ZP_09782800.1| 23S rRNA pseudouridine synthase (fragment) [Arthrospira sp. PCC
8005]
gi|375326344|emb|CCE18553.1| 23S rRNA pseudouridine synthase (fragment) [Arthrospira sp. PCC
8005]
Length = 210
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y ++ G P+ + GVI P+G+ SDR + Q + A+T ++
Sbjct: 65 QAKTARRQYLGIIYGVPKTTSGVIDQPIGR-----HPSDRKKMAIVPQHQGGRSAITHWK 119
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V K YT ++ TGR HQ+RVH A +G PIVGD YG
Sbjct: 120 V-KERLGNYTLIEFELETGRTHQIRVHSAS-MGHPIVGDRVYG 160
>gi|228944912|ref|ZP_04107274.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229120827|ref|ZP_04250069.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
95/8201]
gi|228662487|gb|EEL18085.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
95/8201]
gi|228814780|gb|EEM61039.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|228926342|ref|ZP_04089415.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228833334|gb|EEM78898.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|253702213|ref|YP_003023402.1| pseudouridine synthase [Geobacter sp. M21]
gi|251777063|gb|ACT19644.1| pseudouridine synthase, RluA family [Geobacter sp. M21]
Length = 297
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 24/105 (22%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKV------VVDNGKSDRITVVNNDQIMSAQHAVTR 92
+Q+ YWALV G+P + APLGKV V NGK R T
Sbjct: 162 VQKTYWALVSGSPDQQSWKVEAPLGKVSKFKYGVALNGKPAR----------------TL 205
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++V+ G T ++ PLTGR HQ+RVH A G PI+GD YG
Sbjct: 206 FRVVGEGA-GVTAVEAKPLTGRTHQIRVHLA-YSGFPIIGDETYG 248
>gi|268317176|ref|YP_003290895.1| RluA family pseudouridine synthase [Rhodothermus marinus DSM 4252]
gi|262334710|gb|ACY48507.1| pseudouridine synthase, RluA family [Rhodothermus marinus DSM 4252]
Length = 355
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R + R Y A+V G P +G I A +G+ D R+ VV +D+ + AVT Y+
Sbjct: 194 EHRTIARTYLAIVWGVPDPPRGRIEAAIGR---DPRDRQRMAVVPDDR---GKRAVTHYE 247
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
V++ + ++ TGR HQ+RVH A +G P++GD YG +T R
Sbjct: 248 VVE-ALPAAALVRFKLETGRTHQIRVH-ARHIGHPVLGDPTYGGRTIR 293
>gi|15672980|ref|NP_267154.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis Il1403]
gi|281491492|ref|YP_003353472.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|385830534|ref|YP_005868347.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|418038114|ref|ZP_12676463.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723945|gb|AAK05096.1|AE006334_2 pseudouridine synthase [Lactococcus lactis subsp. lactis Il1403]
gi|281375210|gb|ADA64723.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|326406542|gb|ADZ63613.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|354693792|gb|EHE93525.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374673048|dbj|BAL50939.1| pseudouridine synthase [Lactococcus lactis subsp. lactis IO-1]
Length = 301
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R Y A+V G KG I AP+G+ + D K ++ + AVT ++V++
Sbjct: 164 KRRYLAIVHGEIANDKGTIEAPIGRNLKDRKKQAVVS--------GGKPAVTHFEVLE-R 214
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ---THRKWKQFHPSDLSKD 155
+GYT + L TGR HQ+RVH +G P+ GD YG T K + H L D
Sbjct: 215 FYGYTLIALRLETGRTHQIRVHM-NYIGHPVAGDPLYGPNKTLTPNKGQFLHAETLGFD 272
>gi|191638454|ref|YP_001987620.1| pseudouridine synthase [Lactobacillus casei BL23]
gi|385820159|ref|YP_005856546.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|409997315|ref|YP_006751716.1| RNA pseudouridine synthase YlyB [Lactobacillus casei W56]
gi|190712756|emb|CAQ66762.1| Pseudouridine synthase [Lactobacillus casei BL23]
gi|327382486|gb|AEA53962.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|406358327|emb|CCK22597.1| Uncharacterized RNA pseudouridine synthase YlyB [Lactobacillus
casei W56]
Length = 307
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 165 REYLALVHGTFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFE 216
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 217 H-YTFIKCILETGRTHQIRVHMAYI-HHPVAGDPLYG 251
>gi|410632029|ref|ZP_11342700.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
gi|410148565|dbj|GAC19567.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
Length = 317
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R + + Y ALV G ++ + APL K + +G +RI +V+++ + + TRY+++
Sbjct: 170 RKVDKRYQALVAGEWPANRFKVKAPLLKNTLKSG--ERIVLVDDE----GKPSETRYRIL 223
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ S + T ++ SP+TGR HQ+RVHC G PI D +YG
Sbjct: 224 E-SFNQATLVEASPITGRTHQIRVHCLHA-GHPIAADNRYG 262
>gi|399043350|ref|ZP_10737704.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398058188|gb|EJL50096.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 341
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G I+A LG+ V D + V + A A+T Y+V++
Sbjct: 181 LERAYQAIVWGRPRTLTGTINASLGRAVGDRTRR----AVKRAETQDADEAITHYEVLER 236
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYG 137
L+ L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FHENPDATSLASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|339640863|ref|ZP_08662307.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
056 str. F0418]
gi|339454132|gb|EGP66747.1| pseudouridine synthase, RluA family [Streptococcus sp. oral taxon
056 str. F0418]
Length = 295
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ A+TR+QV++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPALTRFQVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGHGQF 259
>gi|312127570|ref|YP_003992444.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
hydrothermalis 108]
gi|311777589|gb|ADQ07075.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
hydrothermalis 108]
Length = 299
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+A+ G + GVI+AP+G+ V+ K + VV N + AVT ++V++
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT++KL TGR HQ+RVH + + G P++GD YG
Sbjct: 211 RFDKYTFVKLRLKTGRTHQIRVHMSYI-GYPLLGDGTYG 248
>gi|229154871|ref|ZP_04282985.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
ATCC 4342]
gi|228628429|gb|EEK85142.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
ATCC 4342]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|410667646|ref|YP_006920017.1| pseudouridylate synthase RluA [Thermacetogenium phaeum DSM 12270]
gi|409105393|gb|AFV11518.1| pseudouridylate synthase RluA [Thermacetogenium phaeum DSM 12270]
Length = 313
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R ++R Y ALV G + KGVI AP+G+ + ++ + V + A+ A T Y+
Sbjct: 165 KERSIKREYLALVHGEVKEDKGVIDAPVGR----DPRNRKKMAVLPEGAPGAKSARTSYR 220
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V + GYT L +S TGR HQ+R H + LG P+ GD YG
Sbjct: 221 V-RERFAGYTLLGVSLETGRTHQIRTHMS-FLGHPVAGDPVYG 261
>gi|116494944|ref|YP_806678.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
ATCC 334]
gi|227535056|ref|ZP_03965105.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|301066507|ref|YP_003788530.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus casei str.
Zhang]
gi|417986821|ref|ZP_12627386.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|417999198|ref|ZP_12639410.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|418002143|ref|ZP_12642267.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|418010905|ref|ZP_12650676.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
gi|116105094|gb|ABJ70236.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei ATCC 334]
gi|227187271|gb|EEI67338.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|300438914|gb|ADK18680.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
str. Zhang]
gi|410524555|gb|EKP99463.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|410539748|gb|EKQ14273.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|410544826|gb|EKQ19140.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|410553484|gb|EKQ27487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
Length = 306
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVHGTFKEDEGTIDAPLGR---DPRDRKRQAVVAD-----GRHAVTHFQVLERFE 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTFIKCILETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|410461003|ref|ZP_11314656.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus azotoformans LMG 9581]
gi|409926208|gb|EKN63404.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus azotoformans LMG 9581]
Length = 299
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 18/137 (13%)
Query: 9 HVYEKCIAVSSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPLGK 64
H+ + +SG++ V + + + + +K+ ++R Y A+V G R G+I+AP+G+
Sbjct: 132 HIVNRLDRDTSGLMIVAKNSFVHSLFALEQKKKSIKREYEAIVHGIVRKDVGIINAPIGR 191
Query: 65 VVVDNGKSDRIT--VVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHC 122
K++ I V ND Q AVT Y+V K T + L TGR HQ+RVH
Sbjct: 192 ------KAESIIEREVRND----GQQAVTHYEV-KKRFSDRTLVSLKLETGRTHQIRVHM 240
Query: 123 AEVLGTPIVGDYKYGWQ 139
+ + G P++GD YG Q
Sbjct: 241 SYI-GQPLLGDDLYGGQ 256
>gi|342217473|ref|ZP_08710117.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
gi|341594276|gb|EGS37076.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
Length = 305
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R YW LV GT +G I AP+G+ DRI + N + + + A+T + V +
Sbjct: 167 KRTYWTLVHGTLAEMRGTIEAPIGR-----HPKDRIKMAVN--LKNGREAITHFTV-QER 218
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
YTW+ TGR HQ+RVH A + G P+V D YG++
Sbjct: 219 YRMYTWIACQLETGRTHQIRVHLAYI-GHPVVNDPVYGYK 257
>gi|291383615|ref|XP_002708351.1| PREDICTED: RNA pseudouridylate synthase domain containing 4
[Oryctolagus cuniculus]
Length = 367
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 44/205 (21%)
Query: 43 YWALVVGTPRCSKGVISAPL-GKVVVDNGKSDRITV-----VNNDQIM------SAQHAV 90
YWA+ V P S GV+ P+ K V + ++T+ ++N +++ SA AV
Sbjct: 184 YWAITVHVPVPSAGVVDIPIIEKEVQGQRQHHKMTLSPSYRMDNGKMVKVRSSRSAHLAV 243
Query: 91 TRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPS 150
T+YQV+ S L+L P+TG KHQLRVH + L PI+GD+KY S
Sbjct: 244 TQYQVLS-STLSSALLELQPITGIKHQLRVHLSFGLECPILGDHKY-------------S 289
Query: 151 DLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCD 210
D ++ + +++P GL+ + LHLH +++ LP +
Sbjct: 290 DWNRLAPQKLPGGTLKKLGLEQSKARHIP----LHLHARQLILPALG------------- 332
Query: 211 VSKLETLKLVAPLPSHMQRSWDVLN 235
S+ E L L LP RS L
Sbjct: 333 -SRKEELNLTCKLPHFFVRSLSRLG 356
>gi|49184141|ref|YP_027393.1| pseudouridine synthase [Bacillus anthracis str. Sterne]
gi|167636101|ref|ZP_02394406.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|167641221|ref|ZP_02399475.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|170686706|ref|ZP_02877926.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|177654397|ref|ZP_02936294.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|227815949|ref|YP_002815958.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|229600901|ref|YP_002865732.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|254682628|ref|ZP_05146489.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. CNEVA-9066]
gi|254725424|ref|ZP_05187206.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. A1055]
gi|254734046|ref|ZP_05191760.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Western North America USA6153]
gi|254740807|ref|ZP_05198496.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Kruger B]
gi|254753650|ref|ZP_05205686.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Vollum]
gi|254758747|ref|ZP_05210774.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Australia 94]
gi|270000595|ref|YP_003329033.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. Ames]
gi|291612207|ref|YP_003541021.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. 'Ames Ancestor']
gi|421509621|ref|ZP_15956525.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. UR-1]
gi|421637809|ref|ZP_16078406.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. BF1]
gi|49178068|gb|AAT53444.1| pseudouridine synthetase [Bacillus anthracis str. Sterne]
gi|167510862|gb|EDR86254.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|167528455|gb|EDR91220.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|170669229|gb|EDT19972.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|172080681|gb|EDT65763.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|224552858|gb|ACN55068.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. 'Ames Ancestor']
gi|227004816|gb|ACP14559.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|229265309|gb|ACQ46946.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|269850244|gb|ACZ49984.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Ames]
gi|401820414|gb|EJT19580.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. UR-1]
gi|403395368|gb|EJY92607.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. BF1]
Length = 297
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHLAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|65318577|ref|ZP_00391536.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Bacillus
anthracis str. A2012]
gi|165872829|ref|ZP_02217455.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|170708875|ref|ZP_02899309.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|190569145|ref|ZP_03022043.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|386735014|ref|YP_006208195.1| Pseudouridine synthase [Bacillus anthracis str. H9401]
gi|164711406|gb|EDR16957.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|170126191|gb|EDS95084.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|190559728|gb|EDV13715.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|384384866|gb|AFH82527.1| Pseudouridine synthase [Bacillus anthracis str. H9401]
Length = 292
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 207 RVIDSANHK-THVSLELDTGRTHQIRVHLAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 264
Query: 153 S 153
+
Sbjct: 265 T 265
>gi|422878953|ref|ZP_16925419.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1059]
gi|422928799|ref|ZP_16961741.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 29667]
gi|422931773|ref|ZP_16964704.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK340]
gi|332366655|gb|EGJ44398.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK1059]
gi|339616067|gb|EGQ20725.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis ATCC 29667]
gi|339619505|gb|EGQ24084.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
sanguinis SK340]
Length = 298
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 21/138 (15%)
Query: 18 SSGIITVER-----VMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKS 72
+SG++ + + V D K+ L R YWA+V G +GVI AP+G+ D K
Sbjct: 137 TSGLLMIAKNDQAHVALADELKAKKSL-RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK- 194
Query: 73 DRITVVNNDQIMSAQH--AVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPI 130
Q ++A+ A+TR+QV++ Y+ ++L TGR HQ+RVH A +G P+
Sbjct: 195 ---------QAVTAKGKPALTRFQVLE-RFGDYSLVELQLETGRTHQIRVHMA-YIGHPV 243
Query: 131 VGDYKYG-WQTHRKWKQF 147
GD YG +T + QF
Sbjct: 244 AGDEVYGPRKTLKGHGQF 261
>gi|385823357|ref|YP_005859699.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|418005172|ref|ZP_12645168.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
gi|327385684|gb|AEA57158.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|410547425|gb|EKQ21658.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
Length = 306
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV GT + +G I APLG+ D R VV + +HAVT +QV++
Sbjct: 164 REYLALVHGTFKEDEGTIDAPLGR---DPRDRKRQAVV-----AAGRHAVTHFQVLERFE 215
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
H YT++K TGR HQ+RVH A + P+ GD YG
Sbjct: 216 H-YTFIKCILETGRTHQIRVHMAYI-HHPVAGDPLYG 250
>gi|301052847|ref|YP_003791058.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|423552964|ref|ZP_17529291.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|300375016|gb|ADK03920.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|401184690|gb|EJQ91788.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|294497315|ref|YP_003561015.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
megaterium QM B1551]
gi|294347252|gb|ADE67581.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
megaterium QM B1551]
Length = 303
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R + R Y ALV G + G+I+ P+G+ DR + Q A TRY+V
Sbjct: 163 ERKINRTYIALVQGIIKKEDGIINEPIGR--------DRHHATRRRVSRTGQAAKTRYRV 214
Query: 96 IK-PSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+K + T ++LS TGR HQ+RVH + + G P++GD YG + ++ +Q
Sbjct: 215 LKRNTAKNETLIELSLETGRTHQIRVHMSHI-GYPLLGDTLYGGKRLKEQQQ 265
>gi|52144130|ref|YP_082698.1| pseudouridylate synthase [Bacillus cereus E33L]
gi|51977599|gb|AAU19149.1| pseudouridylate synthase (pseudouridine synthase) [Bacillus cereus
E33L]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|196037436|ref|ZP_03104747.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|196031678|gb|EDX70274.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEEGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|423579510|ref|ZP_17555621.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|401218370|gb|EJR25052.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 262
>gi|320354569|ref|YP_004195908.1| RluA family pseudouridine synthase [Desulfobulbus propionicus DSM
2032]
gi|320123071|gb|ADW18617.1| pseudouridine synthase, RluA family [Desulfobulbus propionicus DSM
2032]
Length = 302
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 33 DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTR 92
D + R + + Y AL++ +PR +G + AP+G+ VD K + DQ ++A T
Sbjct: 153 DFKNRKIHKTYHALLLRSPREREGRLVAPIGRHPVDRKK----MAIRPDQ---GKYAATH 205
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR 142
++V++ +G+ +++ TGR HQ+RVH A L P+ GD YG + R
Sbjct: 206 WRVLESFINGWCLVEIGIETGRTHQIRVHMAS-LRAPVAGDALYGGRVER 254
>gi|288818020|ref|YP_003432367.1| pseudouridine synthase [Hydrogenobacter thermophilus TK-6]
gi|288787419|dbj|BAI69166.1| pseudouridine synthase [Hydrogenobacter thermophilus TK-6]
Length = 318
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R+L+R Y ALV G R G + +G+ VD K +VV + + A T Y+
Sbjct: 164 QRRVLKR-YHALVSGLLREDSGTVEKSIGRHPVDRKK---FSVVED-----GKPAKTEYE 214
Query: 95 VIKP-SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
VIK H T+L + TGR HQ+RVH + +G P++GD YG++T
Sbjct: 215 VIKRFEKHRITFLDVRIHTGRTHQIRVHLS-FIGHPVLGDKTYGFKT 260
>gi|148262954|ref|YP_001229660.1| RluA family pseudouridine synthase [Geobacter uraniireducens Rf4]
gi|146396454|gb|ABQ25087.1| ribosomal large subunit pseudouridine synthase D [Geobacter
uraniireducens Rf4]
Length = 320
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G P+ KG + + +G+ VD + + + +HAVT ++V+
Sbjct: 166 IKRVYLALVYGAPKDDKGRLESHIGRHPVDRKRM-------SGKAKHGKHAVTHWRVVG- 217
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G T L+L TGR HQ+RVH +E G P+VGD YG
Sbjct: 218 RYRGITLLRLRLETGRTHQIRVHLSEA-GYPLVGDDVYG 255
>gi|209550662|ref|YP_002282579.1| pseudouridine synthase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424917077|ref|ZP_18340441.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209536418|gb|ACI56353.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392853253|gb|EJB05774.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 341
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G + APLG+ D + V A A+T Y+VI+
Sbjct: 181 LERAYQAVVWGRPRSLTGTVDAPLGRATGDRTRR----AVKRPDSHDADEAITHYEVIER 236
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYG 137
L+ L TGR HQ+RVH A + G P++GD YG
Sbjct: 237 FQENPDATALASLVECHLETGRTHQIRVHMAHI-GHPLLGDTVYG 280
>gi|317129279|ref|YP_004095561.1| pseudouridine synthase [Bacillus cellulosilyticus DSM 2522]
gi|315474227|gb|ADU30830.1| pseudouridine synthase, RluA family [Bacillus cellulosilyticus DSM
2522]
Length = 305
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
Query: 40 QRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPS 99
+R Y+A+V G KG I AP+G+ DR +++ ++ +++ AVT +QV++
Sbjct: 165 KRRYYAIVSGIIPHDKGTIDAPIGR-----NPEDRQSMMVTEK--NSRDAVTHFQVVE-R 216
Query: 100 CHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 144
+ +T + TGR HQ+RVH + +G PIVGD KYG + +K+
Sbjct: 217 FYRHTLVSCELETGRTHQIRVHL-KYIGFPIVGDPKYGPRKKQKF 260
>gi|407003108|gb|EKE19731.1| hypothetical protein ACD_8C00118G0003 [uncultured bacterium]
Length = 315
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 18 SSGIITVERVMYKDN----DNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SG+I V R N + + R +++ Y A+ G + +GVI + K +
Sbjct: 147 TSGLIVVARNGKAFNALKANFKNREVEKKYLAITKGIFKEKEGVIEKAIAK---SSSYRK 203
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
++ NN + + + AVT ++V++ C Y+ +++ P TGR HQ+R+H A + G PIVGD
Sbjct: 204 QVIARNNTKTI-IREAVTNFRVVE-ECGDYSMVEVLPKTGRTHQIRIHLASI-GHPIVGD 260
Query: 134 YKYG 137
YG
Sbjct: 261 VVYG 264
>gi|441495853|ref|ZP_20978091.1| Ribosomal large subunit pseudouridine synthase D [Fulvivirga
imtechensis AK7]
gi|441440388|gb|ELR73653.1| Ribosomal large subunit pseudouridine synthase D [Fulvivirga
imtechensis AK7]
Length = 341
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+ALV G P KG I+ LG+ + D R+TV D+ + ++A+T Y+V++
Sbjct: 181 IERTYYALVWGVPEPEKGTININLGRSLKDR----RVTVAYEDESI-GRNAITHYEVVE- 234
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQF 147
+ +K + TGR HQ+R H LG P+ D YG K QF
Sbjct: 235 DLRYVSLVKCNLETGRTHQIRAHMKH-LGHPLFNDATYGGDKVLKGTQF 282
>gi|228951685|ref|ZP_04113787.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228807970|gb|EEM54487.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 292
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 207 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 257
>gi|410455450|ref|ZP_11309330.1| pseudouridylate synthase, 23S RNA-specific [Bacillus bataviensis
LMG 21833]
gi|409929277|gb|EKN66362.1| pseudouridylate synthase, 23S RNA-specific [Bacillus bataviensis
LMG 21833]
Length = 303
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
K+ + R Y A+V G G I APLG+ D + VV+N +HAVT +QV
Sbjct: 163 KKTVTRKYKAIVHGVIPHDYGTIDAPLGR---DTKDRQSMAVVDN-----GKHAVTHFQV 214
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ +T+++ TGR HQ+RVH + +G P+ GD KYG
Sbjct: 215 LD-RFKDFTFVECQLETGRTHQIRVHM-KYIGYPLAGDPKYG 254
>gi|423423385|ref|ZP_17400416.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|423434801|ref|ZP_17411782.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|423505101|ref|ZP_17481692.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449088089|ref|YP_007420530.1| RluA family pseudouridine synthase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|401115667|gb|EJQ23515.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|401125850|gb|EJQ33607.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|402454500|gb|EJV86291.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449021846|gb|AGE77009.1| RluA family pseudouridine synthase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 262
>gi|393787131|ref|ZP_10375263.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
gi|392658366|gb|EIY51996.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
Length = 539
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ Y AL+ G +GV++ P+ +D + +VN + + A+T+YQV+
Sbjct: 413 RTVKKRYIALLDGIIAPDEGVLNLPICPDPLDRPRQ----IVNKE---YGKTAITKYQVL 465
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGT--PIVGDYKYGWQTHRKW 144
+ + T + PLTGR HQLRVH A LG PI GD YG Q R +
Sbjct: 466 ERN-ESQTRIAFYPLTGRTHQLRVHAAHPLGLNCPITGDELYGKQADRLY 514
>gi|384128784|ref|YP_005511397.1| RluA family pseudouridine synthase [Hydrogenobacter thermophilus
TK-6]
gi|308751621|gb|ADO45104.1| pseudouridine synthase, RluA family [Hydrogenobacter thermophilus
TK-6]
Length = 326
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R+L+R Y ALV G R G + +G+ VD K +VV + + A T Y+
Sbjct: 172 QRRVLKR-YHALVSGLLREDSGTVEKSIGRHPVDRKK---FSVVED-----GKPAKTEYE 222
Query: 95 VIKP-SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 140
VIK H T+L + TGR HQ+RVH + +G P++GD YG++T
Sbjct: 223 VIKRFEKHRITFLDVRIHTGRTHQIRVHLS-FIGHPVLGDKTYGFKT 268
>gi|434402867|ref|YP_007145752.1| ribosomal large subunit pseudouridine synthase D [Cylindrospermum
stagnale PCC 7417]
gi|428257122|gb|AFZ23072.1| ribosomal large subunit pseudouridine synthase D [Cylindrospermum
stagnale PCC 7417]
Length = 321
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y +V G PR G+I P+G+ D K + +V+ +Q ++A+T +Q
Sbjct: 169 QAKTARREYLGVVYGAPRTESGIIDLPIGRHPQDRKK---MAIVSIEQ--GGRNAITHWQ 223
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
I+ YT + TGR HQ+RVH A++ G PIVGD Y
Sbjct: 224 -IRERLGNYTLIHFQLETGRTHQIRVHSAKI-GHPIVGDPIY 263
>gi|42780396|ref|NP_977643.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 10987]
gi|42736315|gb|AAS40251.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus ATCC 10987]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ-FHPSDL 152
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q H + L
Sbjct: 212 RVIDSANHK-THVSLELDTGRTHQIRVHMAHI-GHPLLGDNLYGGKRDEMKRQALHSTSL 269
Query: 153 S 153
+
Sbjct: 270 T 270
>gi|253681471|ref|ZP_04862268.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
gi|253561183|gb|EES90635.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
Length = 304
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G + G I PLG+ DRI + + ++A+T Y+V+K
Sbjct: 166 MKREYIALVEGILKKDNGFIDKPLGR-----NPKDRIKMA---VVQEGKNAITHYEVLK- 216
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHR---KWKQFHPSDLS 153
T +K TGR HQ+RVH + +G P+VGD YG++ R K + H L
Sbjct: 217 RFKKNTLVKCILETGRTHQIRVHMS-YIGHPLVGDPMYGFKKQRFKLKGQMLHAKKLG 273
>gi|218439930|ref|YP_002378259.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218172658|gb|ACK71391.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
Length = 548
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
R +++ Y ALV +G +S P G + + R + + + ++T+++VI
Sbjct: 420 RKIEKIYQALV-------QGRVSQPQGTIKLPLWGDPRFRPLQTVDFIRGKESITQFRVI 472
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEV--LGTPIVGDYKYG 137
+T ++ P+TGR HQ+RVHCA+ LGTPI+GD YG
Sbjct: 473 AFE-DNFTRVEFMPITGRTHQIRVHCADQLGLGTPIIGDRLYG 514
>gi|404498283|ref|YP_006722389.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|418068066|ref|ZP_12705386.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78195880|gb|ABB33647.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|373557678|gb|EHP84072.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 319
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y ALV G+P+ G I +G+ +DR+ + + + +HAVT ++V+
Sbjct: 167 IKRIYLALVFGSPKTDTGRIEGAIGRH-----PTDRLRM--SGKAKHGKHAVTHWKVLA- 218
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
G T L+L TGR HQ+RVH AE G P+VGD YG
Sbjct: 219 RYPGMTLLRLRLETGRTHQIRVHLAES-GHPLVGDEVYG 256
>gi|403667693|ref|ZP_10932993.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC8E]
Length = 307
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 37 RILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVI 96
+ + R Y ALV G KG I AP+G+ D K + VV+N +HAVT + V
Sbjct: 165 KTVTRRYTALVHGHIPHDKGTIDAPIGRNTKDRQK---MAVVDN-----GKHAVTHFYVT 216
Query: 97 KPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++ TGR HQ+RVH +G P+VGD KYG
Sbjct: 217 DRFGVDYTLIECRLETGRTHQIRVHM-NYIGYPLVGDPKYG 256
>gi|334133945|ref|ZP_08507480.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
gi|333608453|gb|EGL19750.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
Length = 321
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSC 100
R Y ALV G + G I AP+G+ D+ TV + +++HAVT + V++
Sbjct: 186 RKYVALVHGNLQHDHGTIDAPIGR---DSYDRKLYTVTDK----NSKHAVTHFAVLE-RF 237
Query: 101 HGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
GYT ++L TGR HQ+RVH + +G P+VGD YG
Sbjct: 238 DGYTLVELKLETGRTHQIRVHL-KFIGHPLVGDPSYG 273
>gi|392533822|ref|ZP_10280959.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas arctica A
37-1-2]
Length = 551
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 16/112 (14%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH---AVTR 92
+R + + Y ALV G GVI PL ++D R Q++ +H ++T
Sbjct: 424 ERTIDKRYVALVNGNVAEDSGVIDLPL---MLDFDDKPR-------QMVCYKHGKPSLTT 473
Query: 93 YQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLG--TPIVGDYKYGWQTHR 142
+QV++ + + T L+L P TGR HQLRVHCA LG PI+GD YG + R
Sbjct: 474 WQVLERN-NNITRLQLYPKTGRTHQLRVHCAHSLGLNMPIIGDTHYGQKADR 524
>gi|384185220|ref|YP_005571116.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|452197531|ref|YP_007477612.1| Ribosomal large subunit pseudouridine synthase-like D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326938929|gb|AEA14825.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|452102924|gb|AGF99863.1| Ribosomal large subunit pseudouridine synthase-like D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 275
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 138 HQQKAVKRTYEAIVHGEMVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 189
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI S + T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 190 KVID-STYDKTHVALELETGRTHQIRVHMAHI-GHPLLGDNLYGGRRDEMKRQ 240
>gi|391339750|ref|XP_003744210.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Metaseiulus occidentalis]
Length = 468
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 38/205 (18%)
Query: 14 CIAVSSGIITVERVMYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
C+A + + V + M+K R++++ Y A+ P +GVI + + VD G++
Sbjct: 274 CLAKNKSMADVVKGMFK-----SRLIEKEYVAITRRVPPEKEGVIDKAIAEGSVD-GRTR 327
Query: 74 RITV--------VNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEV 125
+ V V+ + AVTRY+VI S +++L P TG KHQ+RVH
Sbjct: 328 MVIVPTAEPGSDVSLPKFSKTYPAVTRYKVIS-SSEKAAFVRLWPETGYKHQIRVHLGLG 386
Query: 126 LGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPR-- 183
L P++GD+KY S L+ +++P E L+ + +++ R
Sbjct: 387 LRCPVLGDHKY-------------SHLTMIGPQKLPGEM-------LDRLKVRQQKVRDI 426
Query: 184 -LHLHCKEMTLPNVSQAIQKVQLSS 207
LHLH + + +P V + + +SS
Sbjct: 427 PLHLHARRIKIPGVLPGDRDLVVSS 451
>gi|228906938|ref|ZP_04070805.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis IBL 200]
gi|228852686|gb|EEM97473.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus
thuringiensis IBL 200]
Length = 292
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGEMVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 207 KVIGSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDNLYGGRRDEMKRQ 257
>gi|406997571|gb|EKE15603.1| hypothetical protein ACD_11C00118G0003 [uncultured bacterium]
Length = 310
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
+R +++ Y ALV G + +G+I PL + N K +I + ++AVT YQV
Sbjct: 166 ERQIEKKYVALVFGNLQNKEGIIDKPLTRAT--NFKKQKIATGKSRG--KIRNAVTTYQV 221
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
+K Y ++ P TGR HQ+R H + + G PIVGD KY + +
Sbjct: 222 LKSYVE-YDLIEAIPKTGRMHQIRAHFSSI-GHPIVGDEKYFLKKY 265
>gi|406878473|gb|EKD27364.1| hypothetical protein ACD_79C00739G0003 [uncultured bacterium]
Length = 309
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 18/132 (13%)
Query: 18 SSGIITVERVMYKDNDNEKRILQRW--------YWALVVGTPRCSKGVISAPLGKVVVDN 69
+SGI+ + KD EK L+++ Y+ALV G + ++G I + LG V
Sbjct: 143 TSGIVA----LTKDARQEKFFLEQFKNHTVRKTYFALVDGAVKKTEGKIESFLGIVKKQK 198
Query: 70 GKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTP 129
G V + A+T Y+VIK + + ++L+L+PLTGR HQLRV + +G
Sbjct: 199 GFEQWSEVPEG----KGKIAITHYKVIK-NFNNASYLELNPLTGRTHQLRVQLSS-MGHA 252
Query: 130 IVGDYKYGWQTH 141
I+GD YG + H
Sbjct: 253 ILGDTIYGKKYH 264
>gi|336311182|ref|ZP_08566149.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
gi|335865398|gb|EGM70424.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
Length = 320
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
+Q+ Y ALV G V+ PL K+ + +G +RI VN + + + TR+++++
Sbjct: 176 MQKDYLALVKGEWSAQDKVVKQPLLKITLKSG--ERIVRVNAE----GKPSETRFKIVQ- 228
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 139
G T ++ SP+TGR HQ+RVHC + G PI D KY Q
Sbjct: 229 RYQGCTLVQASPVTGRTHQIRVHC-QYAGHPIACDEKYSEQ 268
>gi|344943140|ref|ZP_08782427.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
gi|344260427|gb|EGW20699.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
Length = 319
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 13/110 (11%)
Query: 28 MYKDNDNEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQ 87
+++DN + + Y AL+ G K V++APL K V G +R+ V++ S +
Sbjct: 169 LFRDNH-----IHKTYLALLAGQWARKKLVVTAPLLKNVAKGG--ERMVVISQ----SGK 217
Query: 88 HAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
A T ++ +K T ++ SP TGR HQ+RVH A LG PIVGD +YG
Sbjct: 218 EAETLFRRVKLFSDS-TLVEASPKTGRTHQIRVHAAS-LGHPIVGDERYG 265
>gi|87118928|ref|ZP_01074826.1| ribosomal large subunit pseudouridine synthase C [Marinomonas sp.
MED121]
gi|86165319|gb|EAQ66586.1| ribosomal large subunit pseudouridine synthase C [Marinomonas sp.
MED121]
Length = 322
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 8/102 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
EK +Q+ Y ALV G+ K ++APL K + +G +RI V+ + + ++TR++
Sbjct: 174 EKEGVQKTYQALVYGSWPKRKQQVNAPLLKNELKSG--ERIVKVHTE----GKESLTRFK 227
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
+++ GY+ ++ P+TGR HQ+RVH G PIVGD KY
Sbjct: 228 LLR-QFEGYSLVECEPVTGRTHQIRVHTLHA-GYPIVGDDKY 267
>gi|229108765|ref|ZP_04238373.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
Rock1-15]
gi|229149508|ref|ZP_04277743.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
m1550]
gi|228633981|gb|EEK90575.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
m1550]
gi|228674704|gb|EEL29940.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
Rock1-15]
Length = 292
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 207 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 257
>gi|347750588|ref|YP_004858153.1| RluA family pseudouridine synthase [Bacillus coagulans 36D1]
gi|347583106|gb|AEO99372.1| pseudouridine synthase, RluA family [Bacillus coagulans 36D1]
Length = 303
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 36 KRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQV 95
++ + R Y+ALV G G I AP+G+ D R+ VV+N + AVT + V
Sbjct: 163 EKTVTRKYFALVHGNIPHEAGTIDAPIGR---DPADRQRMAVVDN-----GKDAVTHFHV 214
Query: 96 IKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
++ YT+++ TGR HQ+RVH + +G P+ GD KYG
Sbjct: 215 LE-RFDRYTFIECRLETGRTHQIRVHM-KYIGHPLAGDPKYG 254
>gi|312622398|ref|YP_004024011.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202865|gb|ADQ46192.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 299
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 10/99 (10%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
++R Y+A+ G + GVI+AP+G+ V+ K + VV N + AVT ++V++
Sbjct: 160 IKRIYYAICEGVLKEDSGVINAPIGRHPVNRLK---MAVVPN-----GKEAVTYFEVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT++KL TGR HQ+RVH + + G P++GD YG
Sbjct: 211 RFDKYTFIKLRLKTGRTHQIRVHISYI-GYPLLGDGIYG 248
>gi|307704906|ref|ZP_07641797.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK597]
gi|307621520|gb|EFO00566.1| pseudouridine synthase, RluA family protein [Streptococcus mitis
SK597]
Length = 295
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGLGQF 259
>gi|284044971|ref|YP_003395311.1| pseudouridine synthase [Conexibacter woesei DSM 14684]
gi|283949192|gb|ADB51936.1| pseudouridine synthase, RluA family [Conexibacter woesei DSM 14684]
Length = 299
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
E R + R Y ALV GTP G I AP+G+ D R++ +D + A T ++
Sbjct: 157 EARDVTREYVALVEGTPPARSGTIDAPIGR---DRRVRTRMSTETDDP----RDARTHFR 209
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
+ + + L+++ TGR HQ+RVH E +G P+VGD +YG
Sbjct: 210 LER-ALPDSALLRVTLETGRTHQIRVHL-EAIGHPVVGDPEYG 250
>gi|229068860|ref|ZP_04202155.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
F65185]
gi|228714278|gb|EEL66158.1| Uncharacterized RNA pseudouridine synthase yjbO [Bacillus cereus
F65185]
Length = 292
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 155 HQQKAVKRTYEAIVHGKIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 206
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 207 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 257
>gi|222086840|ref|YP_002545374.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221724288|gb|ACM27444.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 343
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 39 LQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKP 98
L+R Y A+V G PR G ++APLG+ D + V A A+T Y+VI+
Sbjct: 183 LERAYQAIVWGRPRQLVGTVNAPLGRATGDRTRRS----VKRPGSPDADEAITHYEVIER 238
Query: 99 SCHGYTWLKLSPL------TGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDL 152
L+ L TGR HQ+RVH A + G P++GD YG K D
Sbjct: 239 FHEAPDATALASLIDCHLETGRTHQIRVHMAHI-GHPLLGDAAYGGGFKTKANLL--PDA 295
Query: 153 SKDSNEEIPKEKTLHFGLDLE 173
++++ P++ + L E
Sbjct: 296 AREAVNRFPRQALHAYLLQFE 316
>gi|206967561|ref|ZP_03228517.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|365162004|ref|ZP_09358139.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|206736481|gb|EDZ53628.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|363619321|gb|EHL70640.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
++++ ++R Y A+V G +G+I AP+G+ KSD +++ Q AVT +
Sbjct: 160 HQQKAVKRTYEAIVHGRIVEREGMIDAPIGR------KSD--SIIERTVCEDGQRAVTHF 211
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQ 146
+VI + H T + L TGR HQ+RVH A + G P++GD YG + +Q
Sbjct: 212 KVIDSTYHK-THVALELETGRTHQIRVHMAHI-GHPLLGDSLYGGRRDEMKRQ 262
>gi|339320094|ref|YP_004679789.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Midichloria mitochondrii IricVA]
gi|338226219|gb|AEI89103.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Midichloria mitochondrii IricVA]
Length = 319
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 18 SSGIITVERVMYKDND----NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSD 73
+SGI+ + R + + + R + + Y A+V G P+ K VI PL K G +
Sbjct: 149 TSGILIMARTIKAAQEIADIFQNRDIDKKYLAIVQGKPKELKEVIDIPLEKKDSGAGFEN 208
Query: 74 RITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGD 133
N Q A+TRY+V+ + L++ P+TGRKHQ+R H A +G PI+ D
Sbjct: 209 MAPSKNGKQ------AITRYRVLAHNERA-ALLEVIPVTGRKHQIRAHLA-TIGCPIISD 260
Query: 134 YKYGWQ 139
KY +
Sbjct: 261 KKYNKE 266
>gi|392428592|ref|YP_006469603.1| 23S rRNA pseudouridine synthase [Streptococcus intermedius JTH08]
gi|419777226|ref|ZP_14303143.1| pseudouridine synthase, RluA family [Streptococcus intermedius
SK54]
gi|383845113|gb|EID82518.1| pseudouridine synthase, RluA family [Streptococcus intermedius
SK54]
gi|391757738|dbj|BAM23355.1| 23S rRNA pseudouridine synthase [Streptococcus intermedius JTH08]
Length = 298
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ A+TR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAITRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
YT ++L TGR HQ+RVH A +G P+ GD YG
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMA-YIGHPVAGDGVYG 248
>gi|421872013|ref|ZP_16303633.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
gi|372459270|emb|CCF13182.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
+ R L+R Y ALV G GVI AP+G+ K + +++ + Q AVT Y
Sbjct: 159 QKNRSLKRRYQALVHGRVTPQSGVIDAPIGR------KEE--SIIEREVRPDGQQAVTHY 210
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
QV+K S + ++L TGR HQ+RVH + LG P++GD YG
Sbjct: 211 QVLK-STDDLSHIQLQLETGRTHQIRVHMS-YLGYPLLGDDLYG 252
>gi|406576385|ref|ZP_11052014.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD6S]
gi|404461392|gb|EKA07323.1| 23S rluA family pseudouridine synthase [Streptococcus sp. GMD6S]
Length = 299
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ AVTR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAVTRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
Y+ ++L TGR HQ+RVH A +G P+ GD YG +T + QF
Sbjct: 211 RFGDYSLVELQLETGRTHQIRVHMA-YIGHPVAGDEVYGPRKTLKGQGQF 259
>gi|406984956|gb|EKE05863.1| hypothetical protein ACD_19C00176G0085 [uncultured bacterium]
Length = 235
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 36/155 (23%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
++R++ + Y ALV G S+G I+ P+G++ + DR V+ N + AVT+Y
Sbjct: 85 KERLVHKTYIALVHGNVERSEGTINEPVGRLP---WRRDRFGVLPN-----GREAVTKYV 136
Query: 95 VIKP---SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY-GWQT---HRKW--- 144
+I Y+ L+L P TGR HQ+R+H + G PIV D Y G +T RKW
Sbjct: 137 IIDSYNLDQMTYSLLRLMPQTGRTHQIRIHLKHI-GHPIVADEFYAGRKTARHDRKWCPR 195
Query: 145 --------KQFHP---------SDLSKDSNEEIPK 162
K FHP S+L+ D ++ + K
Sbjct: 196 LFLHASEIKFFHPETKKVISFKSELTSDLDQALAK 230
>gi|423068401|ref|ZP_17057189.1| hypothetical protein HMPREF9682_00410 [Streptococcus intermedius
F0395]
gi|355366656|gb|EHG14373.1| hypothetical protein HMPREF9682_00410 [Streptococcus intermedius
F0395]
Length = 298
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 15/110 (13%)
Query: 41 RWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQH--AVTRYQVIKP 98
R YWA+V G +GVI AP+G+ D K Q ++A+ A+TR+ V++
Sbjct: 162 RKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK----------QAVTAKGKPAITRFHVLE- 210
Query: 99 SCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG-WQTHRKWKQF 147
YT ++L TGR HQ+RVH A + G P+ GD YG +T + QF
Sbjct: 211 RFGNYTLVELQLETGRTHQIRVHMAYI-GHPVAGDGVYGPRKTLKGHGQF 259
>gi|113475517|ref|YP_721578.1| ribosomal large subunit pseudouridine synthase D [Trichodesmium
erythraeum IMS101]
gi|110166565|gb|ABG51105.1| ribosomal large subunit pseudouridine synthase D [Trichodesmium
erythraeum IMS101]
Length = 316
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y +V G+P+ G+I+ P+G+ VD K V +I AVT ++
Sbjct: 167 QAKTARREYLGVVYGSPKTDSGIINLPIGRHRVDRKKMAVTPVERGGKI-----AVTHWE 221
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
V K ++ + TGR HQ+RVH A+V G PIVGD YG
Sbjct: 222 V-KERLGNFSMILFRLETGRTHQIRVHSAQV-GYPIVGDTIYG 262
>gi|339010987|ref|ZP_08643555.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|338771975|gb|EGP31510.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
Length = 297
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 34 NEKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRY 93
+ R L+R Y ALV G GVI AP+G+ K + +++ + Q AVT Y
Sbjct: 159 QKNRSLKRRYQALVHGRVTPQSGVIDAPIGR------KEE--SIIEREVRPDGQQAVTHY 210
Query: 94 QVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 137
QV+K S + ++L TGR HQ+RVH + LG P++GD YG
Sbjct: 211 QVLK-STDDLSHIQLQLETGRTHQIRVHMS-YLGYPLLGDDLYG 252
>gi|86608591|ref|YP_477353.1| RluA family pseudouridine synthase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557133|gb|ABD02090.1| pseudouridine synthase, RluA family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 317
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ + +R Y +V G P S+G +SAP+G+ VD K + V+ Q + AVT +Q
Sbjct: 171 QAKTARRLYLGVVFGRPAQSQGTVSAPIGRHPVDRQK---MAVLTPGQ---GRVAVTHWQ 224
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKY 136
V++ YT ++ TGR HQ+RVH A L PIVGD Y
Sbjct: 225 VLE-RLGNYTLMQFELETGRTHQIRVHAAH-LRLPIVGDPLY 264
>gi|350553590|ref|ZP_08922759.1| pseudouridine synthase, RluA family [Thiorhodospira sibirica ATCC
700588]
gi|349790252|gb|EGZ44170.1| pseudouridine synthase, RluA family [Thiorhodospira sibirica ATCC
700588]
Length = 318
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 35 EKRILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 94
+ R ++R Y ALV G + G + AP+G+ VD R+ VV M + A+T Y+
Sbjct: 159 QARTVKREYLALVQGE-LIAGGRVDAPIGRHPVDR---KRMAVVEG---MHGRPAITHYR 211
Query: 95 VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTH 141
+ + GYT L++ TGR HQ+RVH + PIVGD YG + H
Sbjct: 212 IAQ-RFQGYTLLRVQLETGRTHQIRVHMQHIR-HPIVGDPVYGPRAH 256
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,854,225,181
Number of Sequences: 23463169
Number of extensions: 160190218
Number of successful extensions: 333111
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 9634
Number of HSP's that attempted gapping in prelim test: 324981
Number of HSP's gapped (non-prelim): 10947
length of query: 236
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 98
effective length of database: 9,121,278,045
effective search space: 893885248410
effective search space used: 893885248410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)