Query 026614
Match_columns 236
No_of_seqs 117 out of 451
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2E-86 4.4E-91 559.5 14.2 216 1-216 24-239 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 5.5E-84 1.2E-88 568.5 22.2 217 1-217 20-238 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 1.6E-79 3.4E-84 538.9 20.3 216 1-216 20-235 (236)
4 KOG0841 Multifunctional chaper 100.0 9.6E-76 2.1E-80 507.0 17.8 217 1-217 21-238 (247)
5 PF13424 TPR_12: Tetratricopep 96.2 0.0092 2E-07 42.3 4.7 54 124-179 22-75 (78)
6 PF12862 Apc5: Anaphase-promot 90.9 1.5 3.2E-05 32.8 7.3 72 107-184 3-75 (94)
7 PF04781 DUF627: Protein of un 83.9 2.5 5.5E-05 33.3 5.0 59 78-137 15-74 (111)
8 PF13414 TPR_11: TPR repeat; P 82.7 6.1 0.00013 26.7 6.1 46 124-178 20-66 (69)
9 PF13374 TPR_10: Tetratricopep 81.5 1.5 3.3E-05 26.5 2.4 23 124-146 19-41 (42)
10 KOG1840 Kinesin light chain [C 79.5 21 0.00045 35.2 10.7 150 21-185 245-402 (508)
11 KOG1840 Kinesin light chain [C 75.1 7.8 0.00017 38.2 6.4 54 124-178 258-311 (508)
12 KOG4759 Ribosome recycling fac 69.0 30 0.00066 31.2 8.1 71 13-86 183-253 (263)
13 COG0233 Frr Ribosome recycling 67.9 26 0.00057 30.1 7.2 73 13-86 105-177 (187)
14 PF01765 RRF: Ribosome recycli 67.1 28 0.0006 28.8 7.2 73 13-86 85-157 (165)
15 PF13424 TPR_12: Tetratricopep 65.9 11 0.00023 26.2 3.9 38 145-184 1-38 (78)
16 PF13431 TPR_17: Tetratricopep 62.8 9.3 0.0002 23.1 2.6 34 129-171 1-34 (34)
17 cd00520 RRF Ribosome recycling 60.3 33 0.00072 29.0 6.5 73 13-86 99-171 (179)
18 PF13371 TPR_9: Tetratricopept 59.6 41 0.00088 22.7 5.9 44 125-177 13-56 (73)
19 TIGR00496 frr ribosome recycli 59.1 42 0.0009 28.4 6.8 73 13-86 94-166 (176)
20 CHL00033 ycf3 photosystem I as 58.1 88 0.0019 25.0 8.5 68 124-200 89-162 (168)
21 KOG4162 Predicted calmodulin-b 56.6 64 0.0014 33.5 8.7 70 100-178 436-506 (799)
22 PRK00083 frr ribosome recyclin 55.6 51 0.0011 28.1 6.9 73 13-86 103-175 (185)
23 PRK14720 transcript cleavage f 54.5 51 0.0011 34.9 7.9 87 80-181 88-180 (906)
24 PF14559 TPR_19: Tetratricopep 54.3 59 0.0013 21.5 5.9 45 124-177 8-52 (68)
25 CHL00033 ycf3 photosystem I as 50.9 57 0.0012 26.2 6.3 49 124-178 52-100 (168)
26 PF06552 TOM20_plant: Plant sp 48.9 58 0.0013 28.0 6.1 88 104-198 32-122 (186)
27 COG4499 Predicted membrane pro 46.1 40 0.00086 32.3 5.0 47 149-195 231-282 (434)
28 COG3947 Response regulator con 45.8 37 0.00079 31.7 4.6 45 162-211 291-335 (361)
29 PRK12794 flaF flagellar biosyn 43.7 28 0.00061 27.8 3.2 54 159-212 8-61 (122)
30 PRK15363 pathogenicity island 42.7 73 0.0016 26.6 5.7 72 120-204 82-155 (157)
31 TIGR02795 tol_pal_ybgF tol-pal 40.5 1E+02 0.0022 22.1 5.8 50 124-179 56-105 (119)
32 PRK02603 photosystem I assembl 40.3 1.1E+02 0.0024 24.6 6.5 50 124-179 52-101 (172)
33 PF12688 TPR_5: Tetratrico pep 39.9 1.4E+02 0.0029 23.5 6.6 50 124-179 18-67 (120)
34 PF08424 NRDE-2: NRDE-2, neces 38.1 2.1E+02 0.0045 26.1 8.5 89 123-218 118-216 (321)
35 TIGR00990 3a0801s09 mitochondr 37.5 68 0.0015 31.6 5.5 53 124-178 484-536 (615)
36 PF13432 TPR_16: Tetratricopep 37.1 1.1E+02 0.0025 20.0 5.1 46 124-178 14-59 (65)
37 PF09324 DUF1981: Domain of un 36.7 1.7E+02 0.0037 21.5 6.8 45 4-48 18-67 (86)
38 PF10083 DUF2321: Uncharacteri 36.3 44 0.00096 28.0 3.4 32 2-33 85-116 (158)
39 TIGR03504 FimV_Cterm FimV C-te 35.4 71 0.0015 20.8 3.6 40 153-200 3-42 (44)
40 PF12895 Apc3: Anaphase-promot 35.0 59 0.0013 22.9 3.6 14 162-175 70-83 (84)
41 PRK12793 flaF flagellar biosyn 34.4 42 0.00091 26.5 2.8 53 159-212 6-59 (115)
42 PLN03088 SGT1, suppressor of 34.1 1.2E+02 0.0027 28.0 6.4 46 128-177 50-97 (356)
43 PRK10866 outer membrane biogen 32.5 1.3E+02 0.0028 26.4 6.0 36 173-208 140-176 (243)
44 cd00189 TPR Tetratricopeptide 31.3 1.4E+02 0.0031 19.0 5.1 45 125-178 18-62 (100)
45 PF08631 SPO22: Meiosis protei 30.6 3.8E+02 0.0082 23.6 9.0 88 124-212 10-100 (278)
46 KOG1126 DNA-binding cell divis 30.5 73 0.0016 32.3 4.4 45 124-177 506-550 (638)
47 KOG1107 Membrane coat complex 29.2 1.3E+02 0.0028 31.0 5.8 42 123-164 656-698 (760)
48 PRK15359 type III secretion sy 28.9 1.8E+02 0.0039 22.9 5.8 44 123-178 74-120 (144)
49 TIGR00990 3a0801s09 mitochondr 28.9 1.7E+02 0.0038 28.8 6.8 61 141-205 537-597 (615)
50 PRK02603 photosystem I assembl 28.7 3.1E+02 0.0067 22.0 8.1 13 124-136 89-101 (172)
51 TIGR02552 LcrH_SycD type III s 28.4 2.1E+02 0.0045 21.4 5.9 47 124-179 68-114 (135)
52 COG4105 ComL DNA uptake lipopr 28.1 1.7E+02 0.0036 26.4 5.9 81 121-207 73-167 (254)
53 TIGR02521 type_IV_pilW type IV 27.6 2.2E+02 0.0047 22.4 6.2 15 163-177 112-126 (234)
54 PF10516 SHNi-TPR: SHNi-TPR; 27.1 54 0.0012 20.7 1.9 37 105-144 2-38 (38)
55 TIGR02521 type_IV_pilW type IV 27.0 2E+02 0.0044 22.6 5.9 48 124-178 116-163 (234)
56 PF09969 DUF2203: Uncharacteri 27.0 3.2E+02 0.0069 21.6 8.7 66 15-80 3-68 (120)
57 KOG0570 Transcriptional coacti 26.7 4E+02 0.0087 23.4 7.7 53 18-85 109-166 (223)
58 TIGR02795 tol_pal_ybgF tol-pal 26.5 2.1E+02 0.0046 20.4 5.5 49 124-178 19-67 (119)
59 PHA02103 hypothetical protein 24.1 21 0.00045 28.2 -0.5 14 103-116 78-91 (135)
60 PF14490 HHH_4: Helix-hairpin- 24.1 1.1E+02 0.0023 22.8 3.4 49 100-160 38-87 (94)
61 PF08717 nsp8: nsp8 replicase; 23.2 1.1E+02 0.0023 26.5 3.6 38 122-179 14-51 (199)
62 KOG0553 TPR repeat-containing 23.2 2.2E+02 0.0047 26.4 5.8 44 125-177 99-142 (304)
63 KOG0547 Translocase of outer m 23.1 96 0.0021 30.9 3.7 45 124-177 132-176 (606)
64 PF09986 DUF2225: Uncharacteri 23.1 4.9E+02 0.011 22.4 8.3 60 122-183 92-154 (214)
65 PF10515 APP_amyloid: beta-amy 23.1 45 0.00097 22.8 1.0 17 7-23 20-36 (52)
66 PRK15331 chaperone protein Sic 22.4 4.1E+02 0.0089 22.3 6.9 70 123-207 87-156 (165)
67 PRK11820 hypothetical protein; 21.4 2.3E+02 0.005 25.8 5.6 60 127-187 85-145 (288)
68 PF13174 TPR_6: Tetratricopept 20.7 1.7E+02 0.0036 16.1 3.4 25 153-178 4-28 (33)
69 PF12569 NARP1: NMDA receptor- 20.5 3.2E+02 0.007 27.0 6.8 61 117-178 156-222 (517)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-86 Score=559.46 Aligned_cols=216 Identities=73% Similarity=1.142 Sum_probs=212.0
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026614 1 MVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMT 80 (236)
Q Consensus 1 M~~~mk~~i~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~ 80 (236)
|++-||.++-.+.+|+.+|||||||||||+||.||+|||++++++|+++.++|..++.+|+.||++|++||..||++|+.
T Consensus 24 MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~lI~eyrkkiE~EL~~icddiL~ 103 (268)
T COG5040 24 MVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVELIKEYRKKIETELTKICDDILS 103 (268)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCchhhhHhhhccccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHH
Q 026614 81 VIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY 160 (236)
Q Consensus 81 lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~y 160 (236)
+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|...||||||||||||||||||||
T Consensus 104 vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA~teLpPT~PirLGLALNfSVFyY 183 (268)
T COG5040 104 VLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYY 183 (268)
T ss_pred HHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHhhccCCCCCchhhhheecceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhccCCCCC
Q 026614 161 EIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED 216 (236)
Q Consensus 161 Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~ 216 (236)
||++++++||.+||+|||+||++||+|+|++|+|+|+||||||||||+||++.+..
T Consensus 184 EIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~s 239 (268)
T COG5040 184 EILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEYS 239 (268)
T ss_pred ecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccccc
Confidence 99999999999999999999999999999999999999999999999999975543
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=5.5e-84 Score=568.52 Aligned_cols=217 Identities=75% Similarity=1.136 Sum_probs=210.3
Q ss_pred CHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHH
Q 026614 1 MVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDI 78 (236)
Q Consensus 1 M~~~mk~~i~~-~-~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~ei 78 (236)
|+.+||+++++ + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.++.||++|++||..+|++|
T Consensus 20 m~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~yr~kie~EL~~iC~ei 99 (244)
T smart00101 20 MVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKEYRGKIETELSKICDGI 99 (244)
T ss_pred HHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998 6 599999999999999999999999999999999998878888888999999999999999999999
Q ss_pred HHHHhhhccCCCCCCchhhhHhhhccccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHH
Q 026614 79 MTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVF 158 (236)
Q Consensus 79 i~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF 158 (236)
|+|||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+++||||||+||||+||||||
T Consensus 100 l~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF 179 (244)
T smart00101 100 LKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVF 179 (244)
T ss_pred HHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhccCCCCCc
Q 026614 159 YYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 217 (236)
Q Consensus 159 ~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~~ 217 (236)
||||++++++||++|++|||+|++++|+++|++|+|+++|||||||||++|++++++++
T Consensus 180 ~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 180 YYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999966554
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=1.6e-79 Score=538.91 Aligned_cols=216 Identities=71% Similarity=1.100 Sum_probs=204.7
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026614 1 MVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMT 80 (236)
Q Consensus 1 M~~~mk~~i~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~ 80 (236)
|+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++.+++.+++||++|++||..+|++|++
T Consensus 20 mv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~ 99 (236)
T PF00244_consen 20 MVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIEDELIDICNEIIR 99 (236)
T ss_dssp HHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHhhhccCCCCCCchhhhHhhhccccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHH
Q 026614 81 VIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY 160 (236)
Q Consensus 81 lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~y 160 (236)
+||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+++|||+||+||||+||||||||
T Consensus 100 lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~y 179 (236)
T PF00244_consen 100 LIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYY 179 (236)
T ss_dssp HHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhccCCCCC
Q 026614 161 EIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED 216 (236)
Q Consensus 161 Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~ 216 (236)
||+|++++||+||++||++|++++++++|++|+|+++|||||||||++|+++.+++
T Consensus 180 ei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp HTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred HHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 99999999999999999999999999999999999999999999999999997765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-76 Score=506.96 Aligned_cols=217 Identities=78% Similarity=1.174 Sum_probs=212.5
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026614 1 MVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMT 80 (236)
Q Consensus 1 M~~~mk~~i~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~ 80 (236)
|+.+||.+++.+.+||.||||||||+||||||++|++||+|++|+|+++.+|++.++..+..||++|+.||..+|++++.
T Consensus 21 m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i~~yr~~vE~El~~ic~~iL~ 100 (247)
T KOG0841|consen 21 MVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMIKEYRQKVETELAKICDDILS 100 (247)
T ss_pred HHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCC-CchhhhHhhhccccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHH
Q 026614 81 VIDEHLIPSASA-GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFY 159 (236)
Q Consensus 81 lid~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~ 159 (236)
++|.+|+|+++. .+++|||+|||||||||++||..|++|++++++++.+|+.|+++|+..|+|||||||||+|||||||
T Consensus 101 lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~~l~PthPirLgLaLnfSvf~ 180 (247)
T KOG0841|consen 101 LLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKAELQPTHPIRLGLALNFSVFY 180 (247)
T ss_pred HHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 999999999988 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhccCCCCCc
Q 026614 160 YEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDG 217 (236)
Q Consensus 160 yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~~ 217 (236)
|||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.+++.
T Consensus 181 yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~ 238 (247)
T KOG0841|consen 181 YEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 238 (247)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccc
Confidence 9999999999999999999999999999999999999999999999999999977664
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.22 E-value=0.0092 Score=42.35 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 179 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 179 (236)
+.|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 5799999999999 557899888888888888888776 79999999999998864
No 6
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.87 E-value=1.5 Score=32.76 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=52.3
Q ss_pred ccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhh-hhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 026614 107 YRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAISEL 184 (236)
Q Consensus 107 yRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLa-LN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~l 184 (236)
.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..-
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 34554444443 245788888888998877777755555554 788887776 6999999999999998887653
No 7
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.88 E-value=2.5 Score=33.34 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHhhhccCCCCCCchhhhHhhhccccccchhhcccC-chHHHHHHHHHHHHHHHHHHH
Q 026614 78 IMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG-DEKKEAAANSMKAYETATTAA 137 (236)
Q Consensus 78 ii~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~-~~k~~~~e~A~~aY~~A~~~A 137 (236)
.+++|...+...- ..++-.|-+...|+.|..+|....+ +-+..+.-.|.+||.+|..++
T Consensus 15 AL~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 15 ALEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 3444544443332 2223338889999999999998654 557778889999999997554
No 8
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.66 E-value=6.1 Score=26.72 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhC-ChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~-~~~~A~~iAk~afd 178 (236)
+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 5789999999876 34444577888887776 57 79999998888765
No 9
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.48 E-value=1.5 Score=26.53 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc
Q 026614 124 ANSMKAYETATTAAEADLPPTHP 146 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~P 146 (236)
+.|...|++|+.+.+..++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57999999999999988899998
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=79.53 E-value=21 Score=35.23 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=97.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH-HHHhhhhhhCch--hHHHHHH-----HHHHHHHHHHHHhHHHHHHHHhhhccCCCCC
Q 026614 21 NLLSVGYKNVIGARRASWRILS-SIEQKEEAKGNE--VNAKRIK-----EYRQKVESELSDICNDIMTVIDEHLIPSASA 92 (236)
Q Consensus 21 nLlsvayKn~i~~~R~s~R~l~-~~e~~~~~~~~~--~~~~~i~-----~yr~kie~EL~~~C~eii~lid~~Lip~~~~ 92 (236)
+-|++.|-++ +..+.|..+.. ++...+...|.+ .....+. -|+.-=-.|-...|+.+++|..+. +.+..
T Consensus 245 ~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~ 321 (508)
T KOG1840|consen 245 NILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASH 321 (508)
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccCh
Confidence 3455655543 44666666663 344555555532 2222222 234444567888999999999883 33333
Q ss_pred CchhhhHhhhccccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHH
Q 026614 93 GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHL 172 (236)
Q Consensus 93 ~eskVfy~KmkgDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i 172 (236)
++...-+ .++..-..-..=.+.|...|+.|+.+....+.+.||.-=|+--|+++.||- +|..++|.++
T Consensus 322 ~~v~~~l-----------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~ 389 (508)
T KOG1840|consen 322 PEVAAQL-----------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEEL 389 (508)
T ss_pred HHHHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHH
Confidence 3322222 222211111222468999999999999888999999999999999999986 7999999999
Q ss_pred HHHHHHHHHHhhc
Q 026614 173 AKQAFDEAISELD 185 (236)
Q Consensus 173 Ak~afd~Ai~~ld 185 (236)
.++|+...-+..+
T Consensus 390 ~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 390 YKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHhccc
Confidence 9999887755443
No 11
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.12 E-value=7.8 Score=38.17 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
..|...|++|+.+-+..+.++||-.--..-|.||.||. -|+..+|-..++.|.+
T Consensus 258 ~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 258 DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHH
Confidence 36899999999999999999999988888899999987 4888888777777754
No 12
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=68.99 E-value=30 Score=31.24 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 026614 13 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 86 (236)
Q Consensus 13 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 86 (236)
|+.|.|-|.-|+-.-|.....+|.|+|-+..=.-+...+..+. .-.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999864333332222111 2345667888899999988888888765
No 13
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=67.88 E-value=26 Score=30.11 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 026614 13 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 86 (236)
Q Consensus 13 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 86 (236)
|+||.|-|.=|.---|...-..|-|.|.+.-=. +...+....--..-++-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999885211 1111111111112356667888888888888888888754
No 14
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=67.13 E-value=28 Score=28.85 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 026614 13 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 86 (236)
Q Consensus 13 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 86 (236)
|++|.|-|.-|..-.|......|.++|.+..--.+.- +........-++-..+++++|..+-+..+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999864222211 100000002345556777777777777777777543
No 15
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=65.92 E-value=11 Score=26.17 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.6
Q ss_pred CcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 026614 145 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISEL 184 (236)
Q Consensus 145 ~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~l 184 (236)
||.......|.+..|++ +|+.++|+..-++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888888999998886 79999999999999888 5543
No 16
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=62.76 E-value=9.3 Score=23.13 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHH
Q 026614 129 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACH 171 (236)
Q Consensus 129 aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~ 171 (236)
+|++|++ +.|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 3666664 345555 456788888886 599999863
No 17
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=60.32 E-value=33 Score=28.96 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 026614 13 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 86 (236)
Q Consensus 13 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 86 (236)
|+||.|-|.=|+-..|...-..|.+.|.+..--.+. .++....-..-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~-lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDK-IKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999875211111 0100000001234455667777777777666666543
No 18
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=59.63 E-value=41 Score=22.69 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 026614 125 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 177 (236)
Q Consensus 125 ~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 177 (236)
.|..+++.++.+ +|-...+-++++.+++. +|+.++|+....+++
T Consensus 13 ~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 13 EALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 455555555433 55566677778888887 699999988777766
No 19
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=59.07 E-value=42 Score=28.39 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 026614 13 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 86 (236)
Q Consensus 13 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 86 (236)
|+||.|-|.=|.-..|...-..|.++|.+..---+. .+.....-..-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999885211110 0000000001145556667777777777776666543
No 20
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=58.07 E-value=88 Score=25.02 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHH------HHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTL 197 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~y------Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ 197 (236)
+.|..+|++|+.+ .|.+ .....|.++.++ ..+|+.+.|.....+|+.---..+ .++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~-~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI-ALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH-HhCcccHHHHHH
Confidence 4688899998865 2333 333445555555 246888888877777654322222 244455565555
Q ss_pred HHH
Q 026614 198 IMQ 200 (236)
Q Consensus 198 ilq 200 (236)
-|.
T Consensus 160 ~~~ 162 (168)
T CHL00033 160 WLK 162 (168)
T ss_pred HHH
Confidence 443
No 21
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=56.59 E-value=64 Score=33.47 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=50.0
Q ss_pred hhhccccccchhhcc-cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 100 YKMKGDYYRYLAEFK-FGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 100 ~KmkgDyyRYlaE~~-~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
+++-|=-|-..|--. ..++|...-.++.++|++|. .+.|+|| -...+.|++|-+ .++.+.|.+.+++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-----~~d~~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-----QFDPTDP---LVIFYLALQYAE-QRQLTSALDYAREALA 506 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-----hcCCCCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 355566666666554 35678888899999999987 3678999 334555555554 6888888888888764
No 22
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=55.60 E-value=51 Score=28.08 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 026614 13 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 86 (236)
Q Consensus 13 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~L 86 (236)
|+||.|-|.=|.-..|...-..|.+.|.+..--.+.- ++....-..-++-.++.++||..+.+..+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998853211110 000000001234455666677777777666666543
No 23
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=54.53 E-value=51 Score=34.88 Aligned_cols=87 Identities=17% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHhhhccCCCCCCchhhhHhhhccccccch------hhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhh
Q 026614 80 TVIDEHLIPSASAGESTVFFYKMKGDYYRYL------AEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLAL 153 (236)
Q Consensus 80 ~lid~~Lip~~~~~eskVfy~KmkgDyyRYl------aE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaL 153 (236)
+++|. .|.........||++..|||+.-. |++-.. -.-.++|..+|++++++ .|.||. +|
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk---~g~~~ka~~~yer~L~~-----D~~n~~----aL 153 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAK---LNENKKLKGVWERLVKA-----DRDNPE----IV 153 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH---cCChHHHHHHHHHHHhc-----CcccHH----HH
Confidence 55542 344444456678888888876433 443221 11235788899888754 377774 44
Q ss_pred hhHHHHHHHhCChHHHHHHHHHHHHHHH
Q 026614 154 NFSVFYYEIMNSPERACHLAKQAFDEAI 181 (236)
Q Consensus 154 N~SVF~yEi~~~~~~A~~iAk~afd~Ai 181 (236)
|+=-|+|.-. +.++|.+++++|+.--+
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 5444555555 99999999999987644
No 24
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=54.33 E-value=59 Score=21.50 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 177 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 177 (236)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+..
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4567777777643 44455555667777777 599999888766543
No 25
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=50.93 E-value=57 Score=26.15 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...++|+.
T Consensus 52 ~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 52 AEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 47888899888763 2333333455666655554 7999999999888874
No 26
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=48.91 E-value=58 Score=28.02 Aligned_cols=88 Identities=27% Similarity=0.332 Sum_probs=50.8
Q ss_pred cccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCc---chhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 026614 104 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 180 (236)
Q Consensus 104 gDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt~P---irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~A 180 (236)
|...=-++.|.++.+.+++++.|..-|++|+.+- |..+ .-||.|+--=-|+..-..+.+.=.+.|...|+.|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 4444446777788888889999999999998663 3322 4566666555554432222333345666778888
Q ss_pred HHhhccCCcccHHHHHHH
Q 026614 181 ISELDTLNEESYKDSTLI 198 (236)
Q Consensus 181 i~~ld~l~ee~y~ds~~i 198 (236)
+.. .-+.+.|+.+..+
T Consensus 107 v~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 107 VDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHH---TT-HHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHH
Confidence 764 2344667765544
No 27
>COG4499 Predicted membrane protein [Function unknown]
Probab=46.06 E-value=40 Score=32.32 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=39.7
Q ss_pred hhhhhhhHHHHHHHhCChHHHHHHHHHHH-----HHHHHhhccCCcccHHHH
Q 026614 149 LGLALNFSVFYYEIMNSPERACHLAKQAF-----DEAISELDTLNEESYKDS 195 (236)
Q Consensus 149 LgLaLN~SVF~yEi~~~~~~A~~iAk~af-----d~Ai~~ld~l~ee~y~ds 195 (236)
|-|++=|.+|+|-+....+.||.-|.+|| +..+..++.+|.+..+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 34678899999999999999999999996 789999988887665443
No 28
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.77 E-value=37 Score=31.67 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=39.1
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhcc
Q 026614 162 IMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTS 211 (236)
Q Consensus 162 i~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~ 211 (236)
-.|.+.+|+++.|.++. +|.|+|+.++.-+.++-+++||+..=.+
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 36999999999998764 7889999999999999999999976544
No 29
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=43.68 E-value=28 Score=27.76 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhccC
Q 026614 159 YYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 212 (236)
Q Consensus 159 ~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e 212 (236)
|-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.-
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~ 61 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIF 61 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 334444555556666677777777776554442233356779999999999964
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=42.66 E-value=73 Score=26.57 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccc--HHHHHH
Q 026614 120 KEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEES--YKDSTL 197 (236)
Q Consensus 120 ~~~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~--y~ds~~ 197 (236)
..--+.|..+|..|.. |.|.||- ...|.++-+. .+|+.+.|+ ++|+.|+.--...++.. ...+..
T Consensus 82 ~g~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L-~lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYL-ACDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHH-HcCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 3345678888888874 4455552 2233333333 468887765 57777777665444322 233666
Q ss_pred HHHHHHh
Q 026614 198 IMQLLRD 204 (236)
Q Consensus 198 ilqLLrd 204 (236)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6666655
No 31
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=40.54 E-value=1e+02 Score=22.11 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 179 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 179 (236)
+.|...|+.++. +.|.+|......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777763 346776555555666555554 79999999887777665
No 32
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=40.29 E-value=1.1e+02 Score=24.61 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 179 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 179 (236)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 468889998887642 222223345666666665 79999999988887763
No 33
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=39.90 E-value=1.4e+02 Score=23.52 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 179 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 179 (236)
+.|...|++|+.. .|+ .|.|-+..++.+--|- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999752 344 4555556666655555 589999999999888754
No 34
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.10 E-value=2.1e+02 Score=26.08 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhcC----------CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccH
Q 026614 123 AANSMKAYETATTAAEADL----------PPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESY 192 (236)
Q Consensus 123 ~e~A~~aY~~A~~~A~~~L----------~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y 192 (236)
+......|.+++....... +.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 3456777777776554322 23355788899999999999 599999999999988877643333333221
Q ss_pred HHHHHHHHHHHhhHhhhccCCCCCcc
Q 026614 193 KDSTLIMQLLRDNLTLWTSDIPEDGE 218 (236)
Q Consensus 193 ~ds~~ilqLLrdNl~~W~~e~~~~~~ 218 (236)
. +.++.=-.=|.++.+--++
T Consensus 197 ~------~~~~~fe~FWeS~vpRiGE 216 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIGE 216 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCCC
Confidence 1 4444445789998775554
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=37.50 E-value=68 Score=31.64 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
+.|...|++|+.+... .++.++..+ ..++.+..+|+-.|+.++|+.+.++|+.
T Consensus 484 ~~A~~~~~~Al~l~p~-~~~~~~~~~-~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 484 DEAIEKFDTAIELEKE-TKPMYMNVL-PLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHhcCCc-cccccccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5677778877766432 333333222 2355566667767888888888777653
No 36
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=37.06 E-value=1.1e+02 Score=20.00 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
+.|...|++++ ..+|-.--..+..+..++. .|+.++|+..-+++++
T Consensus 14 ~~A~~~~~~~l--------~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 14 DEAIAAFEQAL--------KQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHH--------CCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 34555555554 2335556666677777774 7999999987776654
No 37
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.75 E-value=1.7e+02 Score=21.47 Aligned_cols=45 Identities=13% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHhhh
Q 026614 4 AMKNVAKL-DVELTVEERNLLSVGYKNVIG----ARRASWRILSSIEQKE 48 (236)
Q Consensus 4 ~mk~~i~~-~~~Ls~eERnLlsvayKn~i~----~~R~s~R~l~~~e~~~ 48 (236)
+++.+..+ ...-+.+-|.+...+..+++. ..|++|+++-.+-..-
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 45555444 445678899999999998888 6699999987655443
No 38
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.32 E-value=44 Score=27.95 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhhhhh
Q 026614 2 VDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 33 (236)
Q Consensus 2 ~~~mk~~i~~~~~Ls~eERnLlsvayKn~i~~ 33 (236)
++.-+++++...+||++|++.|.-+...++-.
T Consensus 85 L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 85 LEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 35667888888999999999999999888754
No 39
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=35.38 E-value=71 Score=20.81 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=27.1
Q ss_pred hhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHH
Q 026614 153 LNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQ 200 (236)
Q Consensus 153 LN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilq 200 (236)
|+.+.=|.+ +|+.+.|.++..+.+.+ -+.+...++..+|+
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~~-------~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIEE-------GDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHHc-------CCHHHHHHHHHHHh
Confidence 455566666 69999999998887642 23455666666654
No 40
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=34.95 E-value=59 Score=22.87 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=7.5
Q ss_pred HhCChHHHHHHHHH
Q 026614 162 IMNSPERACHLAKQ 175 (236)
Q Consensus 162 i~~~~~~A~~iAk~ 175 (236)
-+|+.++|+..-++
T Consensus 70 ~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 70 KLGKYEEAIKALEK 83 (84)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred HhCCHHHHHHHHhc
Confidence 35666666665443
No 41
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=34.39 E-value=42 Score=26.54 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=41.1
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhhHhhhccC
Q 026614 159 YYEIMNSPE-RACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSD 212 (236)
Q Consensus 159 ~yEi~~~~~-~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e 212 (236)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+--
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~~ 59 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTVL 59 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Confidence 566677666 7777778889999888876655543 6778889999999999963
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=34.08 E-value=1.2e+02 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhh--cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 026614 128 KAYETATTAAEA--DLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 177 (236)
Q Consensus 128 ~aY~~A~~~A~~--~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 177 (236)
.-|++|+..+.. .+.|.+| ...++.++.|+. +|+.+.|+...++|+
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 345555554433 3444433 223344444443 566666666544443
No 43
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=32.54 E-value=1.3e+02 Score=26.36 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhccCCcccH-HHHHHHHHHHHhhHhh
Q 026614 173 AKQAFDEAISELDTLNEESY-KDSTLIMQLLRDNLTL 208 (236)
Q Consensus 173 Ak~afd~Ai~~ld~l~ee~y-~ds~~ilqLLrdNl~~ 208 (236)
++.||+.--.-++.-++..| +|+...|..||+-|..
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 34444444444445566665 7799999999988753
No 44
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=31.31 E-value=1.4e+02 Score=18.96 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 125 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 125 ~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
.|...+++++. +.|.+| ....+.+..++. .++.++|+...+.+.+
T Consensus 18 ~A~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~-~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 18 EALEYYEKALE-----LDPDNA---DAYYNLAAAYYK-LGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHh-----cCCccH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 45555555543 344444 334455555555 4788888877666554
No 45
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=30.58 E-value=3.8e+02 Score=23.65 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhh-hhhhhHHHHHHHhCChHHHHHHHHHHHHHHH--HhhccCCcccHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--SELDTLNEESYKDSTLIMQ 200 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLg-LaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai--~~ld~l~ee~y~ds~~ilq 200 (236)
+.|.-.|.+|-.+.. .++|....+|. +.+|+.+-.+..-.+.+.|+..-++|++-.- ..++..+.+...==..|++
T Consensus 10 ~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 568888888887775 68999999998 7889999999864499999999999988632 2334444433333466778
Q ss_pred HHHhhHhhhccC
Q 026614 201 LLRDNLTLWTSD 212 (236)
Q Consensus 201 LLrdNl~~W~~e 212 (236)
+|-...-.|...
T Consensus 89 ~La~~~l~~~~~ 100 (278)
T PF08631_consen 89 LLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHcCCCh
Confidence 887777777654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.53 E-value=73 Score=32.34 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 177 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 177 (236)
+.|+-.|++|+ ..||.-.-+.--...+++. +|..++|+++-.+|+
T Consensus 506 e~Ae~~fqkA~--------~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 506 EFAEFHFQKAV--------EINPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred hHHHHHHHhhh--------cCCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 44555555554 2456666666666777766 799999999999997
No 47
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.20 E-value=1.3e+02 Score=31.03 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchh-hhhhhhHHHHHHHhC
Q 026614 123 AANSMKAYETATTAAEADLPPTHPIRL-GLALNFSVFYYEIMN 164 (236)
Q Consensus 123 ~e~A~~aY~~A~~~A~~~L~pt~PirL-gLaLN~SVF~yEi~~ 164 (236)
-++..+|+++|+.+|.+.+.|+-++-| ==+||--.|+||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 467899999999999999999999777 458898888998544
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.87 E-value=1.8e+02 Score=22.93 Aligned_cols=44 Identities=25% Similarity=0.415 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCc---chhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 123 AANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 123 ~e~A~~aY~~A~~~A~~~L~pt~P---irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
.+.|..+|+.|+. +.|.+| .+||.++. .+|++++|+...+.|+.
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~a~~~lg~~l~-------~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPEPVYQTGVCLK-------MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH
Confidence 3568889988874 455565 34444333 47999999887777655
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=28.86 E-value=1.7e+02 Score=28.75 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=35.8
Q ss_pred CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHHHhh
Q 026614 141 LPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDN 205 (236)
Q Consensus 141 L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdN 205 (236)
+.|.++. ..++.+-.++. .|+.++|+..-.+|..-+-+.-+-..--+|.+++.+-..++.+
T Consensus 537 l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 537 IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597 (615)
T ss_pred cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566553 22334444444 7999999998888877665432222233466666664455444
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=28.68 E-value=3.1e+02 Score=21.98 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTA 136 (236)
Q Consensus 124 e~A~~aY~~A~~~ 136 (236)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5688888888865
No 51
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=28.42 E-value=2.1e+02 Score=21.37 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 179 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 179 (236)
..|...|++++.+ .|.+ .....+.+..++ ..|+.++|+..-++++..
T Consensus 68 ~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 68 EEAIDAYALAAAL-----DPDD---PRPYFHAAECLL-ALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 4577777776643 3443 344466666555 579999999987776653
No 52
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=28.14 E-value=1.7e+02 Score=26.43 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=47.2
Q ss_pred HHHHHHHHHH-----HHHHHHHhh--cCCCCCc------chhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccC
Q 026614 121 EAAANSMKAY-----ETATTAAEA--DLPPTHP------IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTL 187 (236)
Q Consensus 121 ~~~e~A~~aY-----~~A~~~A~~--~L~pt~P------irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l 187 (236)
..+..+...| ..|+..+.. .+-|+|| --.||+ +|.-..++.+=-.-+++||+..-.-+...
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 3344454444 456655554 6889999 234555 33334444443444444444444444456
Q ss_pred CcccH-HHHHHHHHHHHhhHh
Q 026614 188 NEESY-KDSTLIMQLLRDNLT 207 (236)
Q Consensus 188 ~ee~y-~ds~~ilqLLrdNl~ 207 (236)
+...| .|+..-|..++|-|.
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA 167 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALA 167 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHH
Confidence 66666 779999999998764
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=27.63 E-value=2.2e+02 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=6.7
Q ss_pred hCChHHHHHHHHHHH
Q 026614 163 MNSPERACHLAKQAF 177 (236)
Q Consensus 163 ~~~~~~A~~iAk~af 177 (236)
.|+.++|....++++
T Consensus 112 ~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 112 QGKYEQAMQQFEQAI 126 (234)
T ss_pred cccHHHHHHHHHHHH
Confidence 344444444444443
No 54
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.06 E-value=54 Score=20.71 Aligned_cols=37 Identities=32% Similarity=0.543 Sum_probs=25.9
Q ss_pred ccccchhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 026614 105 DYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT 144 (236)
Q Consensus 105 DyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~~L~pt 144 (236)
|.|--++|+.-..++. +.|..=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4444566666554443 478889999999988877773
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=27.01 E-value=2e+02 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
+.|...|++++... .+|....+..+.+..++. .|+.++|.....+++.
T Consensus 116 ~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 116 EQAMQQFEQAIEDP------LYPQPARSLENAGLCALK-AGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHHHHHHHHHHhcc------ccccchHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 34555555555321 122222333333333333 4666666665555543
No 56
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=26.98 E-value=3.2e+02 Score=21.59 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026614 15 LTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMT 80 (236)
Q Consensus 15 Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~ 80 (236)
+|.+|-|-|.--.+.++...+...+.+..+.+..............+...+.+..++....++|-+
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 68 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEE 68 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999988888999999998888888776554332211112334445556666666666666544
No 57
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=26.74 E-value=4e+02 Score=23.36 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhhhh-----HHHHHHHHHHHhhhhhhCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 026614 18 EERNLLSVGYKNVIGAR-----RASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEH 85 (236)
Q Consensus 18 eERnLlsvayKn~i~~~-----R~s~R~l~~~e~~~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lid~~ 85 (236)
|+-..+-+-..++|+.+ |.|+|+|...+- +++..+.+++...|.++.++|++.
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi---------------~~~~~~ve~~kk~~~~~~e~l~d~ 166 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLMERQI---------------EQRSDIVEDFKKHLRQVREVLDDQ 166 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888899876 578888753211 233344445555666666666443
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=26.49 E-value=2.1e+02 Score=20.36 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
+.|...|+++.. ..|.+|...-..++.+..++. .|+.+.|+...+.+..
T Consensus 19 ~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 19 ADAIQAFQAFLK-----KYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHH-----HCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 356666666653 235555444455566666665 6999999998887765
No 59
>PHA02103 hypothetical protein
Probab=24.10 E-value=21 Score=28.23 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.1
Q ss_pred ccccccchhhcccC
Q 026614 103 KGDYYRYLAEFKFG 116 (236)
Q Consensus 103 kgDyyRYlaE~~~~ 116 (236)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 36999999986655
No 60
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=24.08 E-value=1.1e+02 Score=22.76 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=31.5
Q ss_pred hhhccccccchhhcccCchHHHHHHHHHHHHHHHHHHHhh-cCCCCCcchhhhhhhhHHHHH
Q 026614 100 YKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA-DLPPTHPIRLGLALNFSVFYY 160 (236)
Q Consensus 100 ~KmkgDyyRYlaE~~~~~~k~~~~e~A~~aY~~A~~~A~~-~L~pt~PirLgLaLN~SVF~y 160 (236)
.+++.|-|+-+.++..- .|+.|-.+|.+ .+++.||-|+.-++-|.+..-
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~~ 87 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLREA 87 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 46778888877766422 25556666654 799999999999998876653
No 61
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=23.20 E-value=1.1e+02 Score=26.51 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 026614 122 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 179 (236)
Q Consensus 122 ~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 179 (236)
.-+.|+++|++|..-- ..| ..++...+|+.|||..||.
T Consensus 14 ~Ye~A~~~Ye~av~ng------~~~--------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 14 AYETARQAYEEAVANG------SSP--------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHHCT--------H--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC------CCH--------------HHHHHHHHHHhHHHHHHhH
Confidence 3468999999997511 111 1357788999999999974
No 62
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.18 E-value=2.2e+02 Score=26.39 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 026614 125 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 177 (236)
Q Consensus 125 ~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 177 (236)
.|.+.|.+|+ .|.|+|||+.. |-|-=|- -+|..+.|++=|+.|+
T Consensus 99 eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 99 EAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHHH
Confidence 4556666665 47788887643 3322222 2566666666666654
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.12 E-value=96 Score=30.89 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 026614 124 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 177 (236)
Q Consensus 124 e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 177 (236)
+.|.++|.+|++++ |..||. .-|-|. .|+-+|+.++-++.+.+|+
T Consensus 132 ~eAIkyY~~AI~l~-----p~epiF---YsNraA-cY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 132 DEAIKYYTQAIELC-----PDEPIF---YSNRAA-CYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHHHHHhcC-----CCCchh---hhhHHH-HHHHHhhHHHHHHHHHHHh
Confidence 57899999998655 444543 234333 4778899999998888875
No 64
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.11 E-value=4.9e+02 Score=22.41 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH---HHHHHh
Q 026614 122 AAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF---DEAISE 183 (236)
Q Consensus 122 ~~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~af---d~Ai~~ 183 (236)
-.+.|..+|.-|+-.+. +...+|..+|...=-...+|.-+|+.+.....-++|. .+|...
T Consensus 92 t~~~ai~~YkLAll~~~--~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQ--IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CHHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999998875 4445555555444445678888899777666666664 455543
No 65
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=23.06 E-value=45 Score=22.82 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=5.9
Q ss_pred HHHhcCCCCCHHHHHHH
Q 026614 7 NVAKLDVELTVEERNLL 23 (236)
Q Consensus 7 ~~i~~~~~Ls~eERnLl 23 (236)
.+|+.++.+|+|||.|-
T Consensus 20 g~veVD~~~tpEe~h~~ 36 (52)
T PF10515_consen 20 GFVEVDPCLTPEERHLS 36 (52)
T ss_dssp ----------HHHHHHH
T ss_pred ceEEecCCCChHHHHHH
Confidence 36788899999999874
No 66
>PRK15331 chaperone protein SicA; Provisional
Probab=22.36 E-value=4.1e+02 Score=22.34 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Q 026614 123 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLL 202 (236)
Q Consensus 123 ~e~A~~aY~~A~~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ilqLL 202 (236)
-++|.++|--|.-+.. -.|.-|.+.|. .|=.+|++.+|.. +|..|+..-. ..+-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~--~dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLK--NDYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHccc--CCCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 3566666666665543 23333555553 3445788888776 7777776311 122234467777777
Q ss_pred HhhHh
Q 026614 203 RDNLT 207 (236)
Q Consensus 203 rdNl~ 207 (236)
..|..
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 66643
No 67
>PRK11820 hypothetical protein; Provisional
Probab=21.44 E-value=2.3e+02 Score=25.84 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHHHHHHH-HHHhhcCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccC
Q 026614 127 MKAYETAT-TAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTL 187 (236)
Q Consensus 127 ~~aY~~A~-~~A~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l 187 (236)
.++|-+++ +++. .++...|+.|.-.|.+.--..+--.+.+..-.....|++.|+..+...
T Consensus 85 ~~~y~~~l~~l~~-~~~~~~~~~l~~ll~~p~v~~~~~~~~~~~~~~l~~al~~AL~~l~~~ 145 (288)
T PRK11820 85 AKQYLEALEELKA-ELPEAGEISLDDLLRWPGVLEAEEEDLEALWAALLAALDEALDDLIEM 145 (288)
T ss_pred HHHHHHHHHHHHH-hcCCCCCCCHHHHhCCCCcccCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 5554 565445999998888753222223355666678889999999887643
No 68
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.69 E-value=1.7e+02 Score=16.11 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=16.6
Q ss_pred hhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 153 LNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 153 LN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
++.+.-++. .|+.++|+..-++.++
T Consensus 4 ~~~a~~~~~-~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYK-LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence 344455555 7899999887766554
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=20.55 E-value=3.2e+02 Score=26.99 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcCC------CCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 026614 117 DEKKEAAANSMKAYETATTAAEADLP------PTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 178 (236)
Q Consensus 117 ~~k~~~~e~A~~aY~~A~~~A~~~L~------pt~PirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 178 (236)
..|..+++.-...|...++... .++ +-.|.-+-.++.|-.-+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455666666666666554432 233 345788888899999999999999999999998873
Done!