Query 026616
Match_columns 236
No_of_seqs 119 out of 1181
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 11.5 69 0.0024 16.6 0.5 10 28-37 2-11 (23)
2 1pfi_A Major coat protein of P 11.2 1.5E+02 0.0053 17.5 2.1 27 143-169 14-40 (46)
3 2q79_A Regulatory protein E2; 11.1 1E+02 0.0035 21.6 1.5 15 17-31 52-66 (93)
4 1f9f_A Regulatory protein E2; 10.8 1E+02 0.0036 21.0 1.4 15 17-31 54-68 (83)
5 1a7g_E E2 DBD, regulatory prot 10.2 1.2E+02 0.0041 20.7 1.6 15 17-31 53-67 (82)
6 1r8h_A Regulatory protein E2; 9.7 1.2E+02 0.0041 20.9 1.4 15 17-31 55-69 (87)
7 1q90_R Cytochrome B6-F complex 9.6 3.5E+02 0.012 16.4 4.0 12 22-33 9-20 (49)
8 3dvk_B Voltage-dependent R-typ 8.7 1E+02 0.0034 15.9 0.5 12 27-38 2-13 (23)
9 2bop_A Protein (E2); protein-D 8.3 1.3E+02 0.0046 20.6 1.2 14 18-31 55-68 (85)
10 3ixz_A Potassium-transporting 7.4 7.8E+02 0.027 24.3 6.8 63 33-95 963-1028(1034)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=11.46 E-value=69 Score=16.55 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 026616 28 IRKVYAIVAM 37 (236)
Q Consensus 28 l~kvy~~l~~ 37 (236)
+.|+|+.+.+
T Consensus 2 VGKiYAallI 11 (23)
T 3dve_B 2 MGKVYAALMI 11 (26)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4566655544
No 2
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=11.20 E-value=1.5e+02 Score=17.53 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=21.1
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHH
Q 026616 143 KRGKDFSFLGPFLSASLLVLIVFGIFM 169 (236)
Q Consensus 143 ~tk~d~~~~~~~l~~~l~~l~v~~l~~ 169 (236)
..|.|....++.+...+..+.++++..
T Consensus 14 ~G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 14 DGQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999988888888888753
No 3
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=11.07 E-value=1e+02 Score=21.60 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.+++.|..|+..|
T Consensus 52 ~F~s~~QR~~FL~tV 66 (93)
T 2q79_A 52 TYDSEWQRDQFLSQV 66 (93)
T ss_dssp ECSSHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 489999999999875
No 4
>1f9f_A Regulatory protein E2; dimeric beta barrel, activator, DNA-binding, trans-acting factor, transcription; 1.90A {Human papillomavirus type 18} SCOP: d.58.8.1 PDB: 1jj4_A
Probab=10.77 E-value=1e+02 Score=21.03 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.+++.|..|+..|
T Consensus 54 ~F~s~~QR~~FL~~V 68 (83)
T 1f9f_A 54 TYHSETQRTKFLNTV 68 (83)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 489999999999875
No 5
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=10.17 E-value=1.2e+02 Score=20.67 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.+++.|..|+..|
T Consensus 53 ~F~s~~QR~~FL~~V 67 (82)
T 1a7g_E 53 TYISTSQRDDFLNTV 67 (82)
T ss_dssp ECSCHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 489999999999875
No 6
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=9.67 E-value=1.2e+02 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.+++.|..|+..|
T Consensus 55 ~F~s~~QR~~FL~~V 69 (87)
T 1r8h_A 55 TYHSEEQRQQFLNVV 69 (87)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 489999999999875
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=9.62 E-value=3.5e+02 Score=16.45 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q 026616 22 EIRWAFIRKVYA 33 (236)
Q Consensus 22 ~~r~~fl~kvy~ 33 (236)
..|++|+.++-.
T Consensus 9 m~RRqfln~l~~ 20 (49)
T 1q90_R 9 MNKRNIMNLILA 20 (49)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 457788887644
No 8
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=8.68 E-value=1e+02 Score=15.92 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 026616 27 FIRKVYAIVAMQ 38 (236)
Q Consensus 27 fl~kvy~~l~~~ 38 (236)
|+.|+|+.+.+|
T Consensus 2 ~VGKiYA~llI~ 13 (23)
T 3dvk_B 2 HMGKIYAAMMIM 13 (26)
T ss_dssp CCHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 456667665544
No 9
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=8.33 E-value=1.3e+02 Score=20.57 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHH
Q 026616 18 IEPPEIRWAFIRKV 31 (236)
Q Consensus 18 ~~~~~~r~~fl~kv 31 (236)
|.+++.|..|+..|
T Consensus 55 F~s~~QR~~FL~tV 68 (85)
T 2bop_A 55 FGSPSQRQDFLKHV 68 (85)
T ss_dssp ESSHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
No 10
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=7.40 E-value=7.8e+02 Score=24.31 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhhh---ccCCcHHHH
Q 026616 33 AIVAMQILLTIAVASVVVFVKPIHKFLASGTPGLVLLIVVFILTLLLICPLFAY---RKRHPWNFV 95 (236)
Q Consensus 33 ~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~l~~~---~~~~p~~~~ 95 (236)
.++..++++..+...+..+.|++...+...|..+..+...+..++..++....+ +|++|.++.
T Consensus 963 ~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~ 1028 (1034)
T 3ixz_A 963 RILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWW 1028 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh
Done!