Query 026616
Match_columns 236
No_of_seqs 119 out of 1181
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 17:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026616.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026616hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 25.9 25 0.0018 21.0 2.8 29 24-52 1-30 (64)
2 d1f9fa_ d.58.8.1 (A:) Papillom 11.5 45 0.0033 21.2 1.4 15 17-31 52-66 (81)
3 d1a7ge_ d.58.8.1 (E:) Papillom 10.6 53 0.0039 20.9 1.6 15 17-31 53-67 (82)
4 d2q79a1 d.58.8.1 (A:284-362) P 10.6 52 0.0038 20.7 1.5 15 17-31 51-65 (79)
5 d1r8ha_ d.58.8.1 (A:) Papillom 9.5 58 0.0043 20.9 1.4 15 17-31 55-69 (87)
6 d2bopa_ d.58.8.1 (A:) Papillom 7.9 68 0.0049 20.4 1.2 16 16-31 53-68 (85)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 6.5 4.1E+02 0.03 18.5 8.1 35 180-214 99-135 (199)
8 d2hjqa1 a.140.3.2 (A:50-103) H 5.9 1.9E+02 0.014 16.1 2.4 16 15-30 32-47 (54)
9 d2nn4a1 a.272.1.1 (A:1-62) Hyp 4.0 1.9E+02 0.014 17.1 1.5 11 195-205 4-14 (62)
10 d1v54c_ f.25.1.1 (C:) Mitochon 3.5 7.7E+02 0.056 17.9 12.9 106 118-229 128-253 (259)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=25.87 E-value=25 Score=20.98 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 026616 24 RWAFIRKVYAIVAMQILL-TIAVASVVVFV 52 (236)
Q Consensus 24 r~~fl~kvy~~l~~~l~~-t~~~~~~~~~~ 52 (236)
|.+..-|+...++.=.+. |.+.+...++.
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 455666777766655444 44444444443
No 2
>d1f9fa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 18 [TaxId: 333761]}
Probab=11.48 E-value=45 Score=21.17 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.|++.|..|++.|
T Consensus 52 ~F~s~~QR~~FL~~V 66 (81)
T d1f9fa_ 52 TYHSETQRTKFLNTV 66 (81)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 589999999999864
No 3
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=10.61 E-value=53 Score=20.85 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.|++.|..|+..|
T Consensus 53 ~F~s~~QR~~FL~~V 67 (82)
T d1a7ge_ 53 TYISTSQRDDFLNTV 67 (82)
T ss_dssp ECSCHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=10.55 E-value=52 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.|++.|..|+..|
T Consensus 51 ~F~s~~QR~~FL~~V 65 (79)
T d2q79a1 51 TYDSEWQRDQFLSQV 65 (79)
T ss_dssp ECSSHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 589999999999865
No 5
>d1r8ha_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 6a [TaxId: 37122]}
Probab=9.45 E-value=58 Score=20.89 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHH
Q 026616 17 MIEPPEIRWAFIRKV 31 (236)
Q Consensus 17 ~~~~~~~r~~fl~kv 31 (236)
.|.|++.|..|+..|
T Consensus 55 ~F~s~~QR~~FL~~V 69 (87)
T d1r8ha_ 55 TYHSEEQRQQFLNVV 69 (87)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 489999999999865
No 6
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=7.86 E-value=68 Score=20.44 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.3
Q ss_pred CCCCCHHHHHHHHHHH
Q 026616 16 GMIEPPEIRWAFIRKV 31 (236)
Q Consensus 16 ~~~~~~~~r~~fl~kv 31 (236)
..|.|++.|..|+..|
T Consensus 53 v~F~s~~QR~~FL~~V 68 (85)
T d2bopa_ 53 ITFGSPSQRQDFLKHV 68 (85)
T ss_dssp EEESSHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHhcC
Confidence 3589999999999865
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.53 E-value=4.1e+02 Score=18.52 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hc-CCccHHHHHH
Q 026616 180 MIYGLMGAIIFSGYIVYDTNNLI-KR-YTYDEYITAA 214 (236)
Q Consensus 180 ~i~~~~g~~lf~~~i~~Dtq~i~-~~-~~~~dyv~~A 214 (236)
........+-++.++.+..++-. |+ .+++|.+..|
T Consensus 99 ~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a 135 (199)
T d1iwga7 99 MVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKS 135 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHG
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34444445557777777665543 23 2456655444
No 8
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=5.90 E-value=1.9e+02 Score=16.05 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.2
Q ss_pred CCCCCCHHHHHHHHHH
Q 026616 15 PGMIEPPEIRWAFIRK 30 (236)
Q Consensus 15 ~~~~~~~~~r~~fl~k 30 (236)
+++|.++..|..|+.|
T Consensus 32 ps~fkn~~eria~il~ 47 (54)
T d2hjqa1 32 PSDFKNADERIAYILK 47 (54)
T ss_dssp TTSCCSHHHHHHHHHH
T ss_pred hhhhcChHHHHHHHHH
Confidence 4789999999888765
No 9
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=4.01 E-value=1.9e+02 Score=17.08 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=8.7
Q ss_pred HHHHHHHhhcC
Q 026616 195 VYDTNNLIKRY 205 (236)
Q Consensus 195 ~~Dtq~i~~~~ 205 (236)
.||.|++.+++
T Consensus 4 lYDVqQLLK~f 14 (62)
T d2nn4a1 4 FYDVQQLLKTF 14 (62)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHC
Confidence 68999888764
No 10
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.50 E-value=7.7e+02 Score=17.88 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCccccchHHHHHHHHHHHHHH----------------HHHHHHhcchHHHHHH
Q 026616 118 KIILEAFILTGAAVAGLTLYTFWAVKRGKDFSFLGPFLSASLLVLIVF----------------GIFMFFFRVGKVAHMI 181 (236)
Q Consensus 118 ~iv~~A~~~T~~if~~ls~~a~~a~~tk~d~~~~~~~l~~~l~~l~v~----------------~l~~~f~~~~~~~~~i 181 (236)
..+-+..+.+.+.....+..+. +.++.-............++... +...-.+.....++-.
T Consensus 128 pllnT~vLl~Ss~t~~~A~~~~---~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lTG~Hg~ 204 (259)
T d1v54c_ 128 PLLNTSVLLASGVSITWAHHSL---MEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGL 204 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccHHH-HHHHHHH---HHHHHHHHHHH
Q 026616 182 YGLMGAIIFSGYIVYDTNNLIKRYTYDEYI-TAAIELY---LDIVNIFIAFL 229 (236)
Q Consensus 182 ~~~~g~~lf~~~i~~Dtq~i~~~~~~~dyv-~~Al~Ly---lDiinLF~~iL 229 (236)
=-.+|++ ...+.-.+...++++++++. .-+..+| +|++++|+..+
T Consensus 205 HVi~G~i---~l~~~~~r~~~~~~~~~~~~~~e~~~~YWHFVDvVWi~lf~~ 253 (259)
T d1v54c_ 205 HVIIGST---FLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVS 253 (259)
T ss_dssp HHHHHHH---HHHHHHHHHHTTCCCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHhcCCCcccchhHHHHHHHHhHHHHHHHHHHHH
Done!