BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026617
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
          Length = 581

 Score = 30.4 bits (67), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 18/89 (20%)

Query: 123 IHGCHHKHPMDGLRLVFPPAGAALVSLALWNLI--------------DVLTKPFITPALY 168
           + GC H    +GLR++ PP      +     L+              + L    I     
Sbjct: 36  MRGCRH----NGLRIIIPPRKCTAPTRVTCRLVKRHRLATMPPMVEGEGLASRLIEVGPS 91

Query: 169 GGILLGYVMYDVTHYYTHHGKPSKGIILR 197
           G   LG V+ ++ H+    GK  + ++LR
Sbjct: 92  GAQFLGPVIVEIPHFAALRGKERELVVLR 120


>pdb|2FPQ|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type D Light
           Chain
          Length = 444

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 175 YVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHFRIRDKGFGISSSLWDI 223
           Y + + THY++ H  P    IL    + +   F + +KGF I +S  +I
Sbjct: 375 YNVKNRTHYFSRHYLPVFANILDDNIYTIRDGFNLTNKGFNIENSGQNI 423


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.144    0.471 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,522,395
Number of Sequences: 62578
Number of extensions: 305730
Number of successful extensions: 842
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)