Query 026617
Match_columns 236
No_of_seqs 174 out of 782
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02434 fatty acid hydroxylas 100.0 4.9E-82 1.1E-86 552.8 22.4 234 1-235 1-234 (237)
2 KOG0539 Sphingolipid fatty aci 100.0 6.8E-79 1.5E-83 517.2 15.5 230 1-232 1-234 (240)
3 COG3000 ERG3 Sterol desaturase 99.9 2.7E-21 5.8E-26 173.1 12.7 142 82-234 93-240 (271)
4 PF04116 FA_hydroxylase: Fatty 99.6 5.3E-15 1.2E-19 113.9 6.9 111 88-207 1-114 (114)
5 PLN02869 fatty aldehyde decarb 99.6 1.1E-14 2.3E-19 141.5 9.8 134 85-231 128-276 (620)
6 KOG0872 Sterol C5 desaturase [ 99.2 1.7E-11 3.6E-16 109.0 7.2 138 81-233 125-265 (312)
7 KOG0873 C-4 sterol methyl oxid 99.1 7.3E-10 1.6E-14 99.3 9.2 133 82-230 118-259 (283)
8 KOG0874 Sphingolipid hydroxyla 98.7 1.6E-09 3.4E-14 94.1 -0.4 139 83-231 121-266 (287)
9 PLN02601 beta-carotene hydroxy 98.5 1.2E-06 2.7E-11 78.2 11.4 121 85-216 137-269 (303)
10 PF10520 Kua-UEV1_localn: Kua- 97.1 0.0014 3.1E-08 55.7 6.5 52 176-227 96-155 (178)
11 KOG3011 Ubiquitin-conjugating 95.8 0.082 1.8E-06 47.3 9.4 137 82-225 107-260 (293)
12 PRK07424 bifunctional sterol d 95.5 0.035 7.6E-07 52.9 6.5 33 198-230 143-175 (406)
13 cd03512 Alkane-hydroxylase Alk 93.2 5.3 0.00011 36.8 15.3 28 84-112 73-100 (314)
14 PLN02601 beta-carotene hydroxy 91.0 1 2.2E-05 40.9 7.4 81 61-143 186-275 (303)
15 COG5274 CYB5 Cytochrome b invo 90.1 0.032 6.8E-07 46.9 -2.6 47 17-75 110-157 (164)
16 PLN02434 fatty acid hydroxylas 84.5 4.3 9.4E-05 36.1 7.3 44 83-131 165-208 (237)
17 PF10520 Kua-UEV1_localn: Kua- 75.2 13 0.00028 31.7 6.9 47 87-134 86-140 (178)
18 KOG0539 Sphingolipid fatty aci 71.4 8.9 0.00019 33.8 5.1 45 85-133 169-213 (240)
19 KOG1600 Fatty acid desaturase 70.5 25 0.00055 32.7 8.1 63 160-223 207-293 (321)
20 PLN02220 delta-9 acyl-lipid de 68.8 96 0.0021 28.5 14.7 18 199-216 243-260 (299)
21 COG3000 ERG3 Sterol desaturase 62.5 38 0.00082 30.3 7.6 39 168-209 96-134 (271)
22 cd03509 DesA_FADS-like Fatty a 58.6 56 0.0012 29.6 8.1 43 165-207 29-86 (288)
23 cd03512 Alkane-hydroxylase Alk 52.0 1.1E+02 0.0024 28.1 8.9 50 83-132 207-274 (314)
24 cd03514 CrtR_beta-carotene-hyd 44.0 94 0.002 26.6 6.8 40 169-208 30-85 (207)
25 PF11118 DUF2627: Protein of u 39.2 1.5E+02 0.0033 21.9 6.2 33 80-112 35-67 (77)
26 cd03511 Rhizopine-oxygenase-li 38.8 98 0.0021 27.5 6.3 41 167-208 49-105 (285)
27 PLN02579 sphingolipid delta-4 35.7 1.5E+02 0.0033 27.4 7.2 11 198-208 126-136 (323)
28 cd03510 Rhizobitoxine-FADS-lik 35.3 1.2E+02 0.0026 25.2 6.0 11 198-208 73-83 (175)
29 PF10710 DUF2512: Protein of u 35.1 1.3E+02 0.0029 24.4 6.0 17 93-109 96-112 (136)
30 PRK07424 bifunctional sterol d 34.4 48 0.001 31.6 3.8 29 172-207 17-45 (406)
31 cd03511 Rhizopine-oxygenase-li 33.8 1.9E+02 0.0042 25.6 7.4 12 120-131 95-106 (285)
32 PRK11056 hypothetical protein; 33.0 1.6E+02 0.0034 23.6 5.8 46 52-98 32-82 (120)
33 PF07226 DUF1422: Protein of u 30.9 1.8E+02 0.0039 23.2 5.8 46 52-98 32-82 (117)
34 COG3239 DesA Fatty acid desatu 30.0 1.9E+02 0.0042 26.8 7.0 50 82-132 62-127 (343)
35 PF04116 FA_hydroxylase: Fatty 29.3 2.3E+02 0.005 20.7 6.3 44 86-129 71-114 (114)
36 cd03508 Delta4-sphingolipid-FA 27.6 2.6E+02 0.0056 25.4 7.2 65 142-206 21-105 (289)
37 cd03507 Delta12-FADS-like The 27.6 1.6E+02 0.0035 25.4 5.6 11 198-208 84-94 (222)
38 PLN03199 delta6-acyl-lipid des 24.8 3.5E+02 0.0075 26.4 8.0 49 82-132 160-225 (485)
39 PRK13875 conjugal transfer pro 24.2 78 0.0017 30.8 3.2 13 10-22 117-129 (440)
40 PF00487 FA_desaturase: Fatty 22.6 1.5E+02 0.0033 24.3 4.4 13 176-188 19-31 (257)
41 COG3239 DesA Fatty acid desatu 22.2 2.3E+02 0.0049 26.3 5.9 33 175-207 76-124 (343)
42 PRK10062 hypothetical protein; 20.7 1.9E+02 0.004 26.8 4.8 36 150-187 74-113 (303)
43 COG5349 Uncharacterized protei 20.6 1.1E+02 0.0023 24.8 2.9 30 47-76 77-106 (126)
44 PF05661 DUF808: Protein of un 20.6 1.8E+02 0.004 26.8 4.7 37 150-188 74-114 (295)
No 1
>PLN02434 fatty acid hydroxylase
Probab=100.00 E-value=4.9e-82 Score=552.84 Aligned_cols=234 Identities=69% Similarity=1.330 Sum_probs=223.0
Q ss_pred CCCCCCccccCCChhHHhhhhhhHHHHHHhhccCCCCCCCccCCcchhhhhcCCcchhhHHHHHHHHHHHHHhhhhccch
Q 026617 1 MVADEPFSVDLNKPLVFQVGHLGEAYEEWVHQPIVGKDSPRFFANGFMEFLTRTKWWVIPLVWLPVVCWSVSKSVKMGLA 80 (236)
Q Consensus 1 ~~~~~~~~~d~~kpl~~qv~~~~~~y~~~v~~p~~~~~~~rlF~n~~lE~~t~t~~~~~p~vw~p~~~~~~~~~~~~~~~ 80 (236)
|++ +|++||+||||++|||++||+|+||||||+++++|+|+|+|+++|.||||+||++|++|+|+++++++.|++.+.+
T Consensus 1 ~~~-~~~~~d~~kpl~~Qv~~~~~~Y~~~vh~p~~~~~~~rlF~~~~lE~lsrt~w~vvp~iw~pvv~~~~~~~~~~~~~ 79 (237)
T PLN02434 1 MVA-QKFTVDLNKPLVFQVGHLGEDYEEWVHQPIVSKEGPRFFESDVLEFLTRTVWWAVPLIWLPVVCWCLVKSVRMGLP 79 (237)
T ss_pred Ccc-hhhcccccchhHHHHHHHhHHHHHHhcCCccCCCCCCCCCcHHHHHhcCCchhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 566 8999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCCCCCCccccchhHHHHHHHHHHHHHHHhhc
Q 026617 81 PYLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPMDGLRLVFPPAGAALVSLALWNLIDVLTK 160 (236)
Q Consensus 81 ~~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P~D~~RlvfpP~~~~~~~~~~~~l~~~l~~ 160 (236)
....++++++|+++||++||++|||+||.++++++++++||++||+||++|+|..|++|||..+++++.++|.++.++++
T Consensus 80 ~~~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~ 159 (237)
T PLN02434 80 LSAVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILCVPFWNLIALFAT 159 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCCCCeecCcHHHHHHHHHHHHHHHHHcc
Confidence 77778889999999999999999999999999999999999999999999999999999999988889999999998998
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHhhhhhhhhhccCCCCCCCCcccchhhhhhhcCCCCCCcccC
Q 026617 161 PFITPALYGGILLGYVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPPAKAAK 235 (236)
Q Consensus 161 ~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~p~~~~~~~lk~~H~~HH~~~~~~nFGvt~~~WD~lFGT~~~~~~~~ 235 (236)
++.+.++++|+++||++||++||++|+.+|++++.|++|++|+.|||+|+++||||||++||++|||.+++++.+
T Consensus 160 ~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~~~~~fGVTs~~wD~vFGT~~~~~~~~ 234 (237)
T PLN02434 160 PATAPALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRDQDKGFGITSSLWDRVFGTLPPSKAAK 234 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCCCCCCCCcCchHHHHhcCCCCCcchhh
Confidence 888999999999999999999999999999889999999999999999999999999999999999998876643
No 2
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-79 Score=517.23 Aligned_cols=230 Identities=53% Similarity=1.035 Sum_probs=212.5
Q ss_pred CCCCCCccccCCChhHHhhhhhhHHHHHHhhccCCCCCCCccCCcchhhhhcCCcchhhHHHHHHHHHHHHHhh-hhccc
Q 026617 1 MVADEPFSVDLNKPLVFQVGHLGEAYEEWVHQPIVGKDSPRFFANGFMEFLTRTKWWVIPLVWLPVVCWSVSKS-VKMGL 79 (236)
Q Consensus 1 ~~~~~~~~~d~~kpl~~qv~~~~~~y~~~v~~p~~~~~~~rlF~n~~lE~~t~t~~~~~p~vw~p~~~~~~~~~-~~~~~ 79 (236)
|++ ++++||++|||++|||++||+|+||||||+++ |+.|+|+||++|.||||.||++|++|+|+++|.+..+ ...+.
T Consensus 1 ~~~-~~~~vDl~kpll~Qvg~lg~~Y~ewVHqP~~~-~g~r~f~sdflE~lTkT~Ww~VP~iWlPvVvy~~~~~t~~~~~ 78 (240)
T KOG0539|consen 1 MVA-KNHTVDLKKPLLFQVGHLGEDYDEWVHQPVDR-GGLRLFDSDFLEPLTKTVWWVVPLIWLPVVVYGFLSFTTSYND 78 (240)
T ss_pred Ccc-cccceeccccchhhhccchHHHHHHhcCcccc-CCCccccchHHHHhhcchhheehhhhhhhhhheeeeecccccc
Confidence 455 89999999999999999999999999999999 7999999999999999999999999999999942222 22233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcccc--CccchhHHHHHHhhcCCCcCCCCCCccccchhHHHHHHHHHHHHHHH
Q 026617 80 APYLAGLIVFLGIITWTLLEYFLHRYLFHIK--TKSYWGNTFHYLIHGCHHKHPMDGLRLVFPPAGAALVSLALWNLIDV 157 (236)
Q Consensus 80 ~~~~~~~~~~~g~~~w~l~EY~lHRflfH~~--~~~~~~~~~~~~~Hg~HH~~P~D~~RlvfpP~~~~~~~~~~~~l~~~ 157 (236)
+...+.+.|++|+++||++||.+|||+||.+ +++++++++||.+||+||+.|+|+.||||||..++++++++|.++.+
T Consensus 79 s~~~~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~~ 158 (240)
T KOG0539|consen 79 SVPVFSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRLVFPPTPFAILAAPFYLILSL 158 (240)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceEecCCchHHHHHHHHHHHHHH
Confidence 4445778899999999999999999999999 56899999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh-hHhhhhhhhhhccCCCCCCCCcccchhhhhhhcCCCCCCc
Q 026617 158 LTKPFITPALYGGILLGYVMYDVTHYYTHHGKPSK-GIILRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPPAK 232 (236)
Q Consensus 158 l~~~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~p~~-~~~~~lk~~H~~HH~~~~~~nFGvt~~~WD~lFGT~~~~~ 232 (236)
+++.+.+.++++|+++||++||++||++|+++|++ ++++.+|++|..|||++++++|||||++||++|||..+.+
T Consensus 159 vl~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~~~~~~~~lK~yHl~HHfk~q~~GfGItS~lWD~VFgTl~~~~ 234 (240)
T KOG0539|consen 159 VLPHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPPKRPYLKHLKKYHLNHHFKHQDLGFGITSSLWDYVFGTLGPLK 234 (240)
T ss_pred hcCcchhhhhhccchhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHhhhhhhccccCccccHHHHHHHhccCCCCc
Confidence 99999999999999999999999999999999865 8999999999999999999999999999999999998765
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.86 E-value=2.7e-21 Score=173.15 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCCCCCCc--cccchhHHHHHHHHHHHHHHHhh
Q 026617 82 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPMDGLR--LVFPPAGAALVSLALWNLIDVLT 159 (236)
Q Consensus 82 ~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P~D~~R--lvfpP~~~~~~~~~~~~l~~~l~ 159 (236)
...++.+++++++-|+..|+.|| ++|..+ ++|++|++||..+.+... +.+.|.+.++.+... .+...+.
T Consensus 93 ~~~~l~~~~~~~~~D~~~Y~~HR-~~H~~~-------~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~-~~~~~l~ 163 (271)
T COG3000 93 LPFALQLLLAFLFLDLGYYWAHR-LLHRVP-------LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLG-LLPLLLL 163 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhhH-------HHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHH-HHHHHHh
Confidence 44567888999999999999999 789886 899999999999865433 567888865543332 2333344
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHh---hhhhhhhhccCCCC-CCCCcccchhhhhhhcCCCCCCccc
Q 026617 160 KPFITPALYGGILLGYVMYDVTHYYTHHGKPSKGII---LRLKRFHMNHHFRI-RDKGFGISSSLWDIVFGTLPPAKAA 234 (236)
Q Consensus 160 ~~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~p~~~~~---~~lk~~H~~HH~~~-~~~nFGvt~~~WD~lFGT~~~~~~~ 234 (236)
+. -..+....+++++..+..+|...+.+ .+.+++ -..+++|+.||.++ .++|||.++++|||+|||+.+++++
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~ 240 (271)
T COG3000 164 GL-SPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDER 240 (271)
T ss_pred cC-CHHHHHHHHHHHHHHHHHHhcCcccc-CCcccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCccc
Confidence 42 23445566677778888899987765 222344 47799999999999 6899999999999999999766544
No 4
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.57 E-value=5.3e-15 Score=113.94 Aligned_cols=111 Identities=34% Similarity=0.515 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcC--CCCCCccccchhHHHHHHHHHHHHHHHhhcchhHH
Q 026617 88 VFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKH--PMDGLRLVFPPAGAALVSLALWNLIDVLTKPFITP 165 (236)
Q Consensus 88 ~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~--P~D~~RlvfpP~~~~~~~~~~~~l~~~l~~~~~a~ 165 (236)
|+++++++|+.||++|| ++|+.+ +.|++|+.||+. |.......+.|++.++...+...+. .++....+.
T Consensus 1 f~~~~l~~d~~~Y~~HR-l~H~~~-------~l~~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 71 (114)
T PF04116_consen 1 FLLGFLLWDFWEYWMHR-LLHKIP-------FLWRIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLP-LLLLPFHAL 71 (114)
T ss_pred CeeeHHHHHHHHHHHHH-HHhcCc-------hHHHHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHH-HHHHhHhHH
Confidence 46789999999999999 899654 356899999975 2222335577877655444333222 233334566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCChhHhhhhhhhhhccCC
Q 026617 166 ALYGGILLGYVMYDVTHYYTHHG-KPSKGIILRLKRFHMNHHF 207 (236)
Q Consensus 166 ~~~~g~l~gyl~Yd~~Hy~~H~~-~p~~~~~~~lk~~H~~HH~ 207 (236)
++.++++++++.|+++|+..+.. .++.++++.++++|..||+
T Consensus 72 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 72 AFLLGIALFYLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 77888999999999999988544 3445788999999999995
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=99.56 E-value=1.1e-14 Score=141.52 Aligned_cols=134 Identities=18% Similarity=0.296 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCC-CCCCccccchhHH-HHHHHHHHHHH-HHhhcc
Q 026617 85 GLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHP-MDGLRLVFPPAGA-ALVSLALWNLI-DVLTKP 161 (236)
Q Consensus 85 ~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P-~D~~RlvfpP~~~-~~~~~~~~~l~-~~l~~~ 161 (236)
+..+++-+...|+..||+|| ++|..+ +++++|.+||++. .++....++|.+. +...+.+...+ ..+++.
T Consensus 128 l~~~Llhv~~~Df~fYW~HR-llH~~~-------LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g 199 (620)
T PLN02869 128 LITILLHMGPVEFLYYWLHR-ALHHHY-------LYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTG 199 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHH-------HHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455556678999999999 678753 8999999999984 2444444677542 22222221111 111111
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhhcC-C--CC--------hhHhhhhhhhhhccCCCCCCCCcccchhhhhhhcCCCC
Q 026617 162 FITPALYGGILLGYVMYDVT-HYYTHHG-K--PS--------KGIILRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLP 229 (236)
Q Consensus 162 ~~a~~~~~g~l~gyl~Yd~~-Hy~~H~~-~--p~--------~~~~~~lk~~H~~HH~~~~~~nFGvt~~~WD~lFGT~~ 229 (236)
... ...+.+|+.|... ....|.+ + |+ .+++...+++|..||.+ .++|||..+++|||+|||+.
T Consensus 200 ~~h----i~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd~NYGlfF~~WDrLFGT~d 274 (620)
T PLN02869 200 TAS----IAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTMD 274 (620)
T ss_pred cch----HHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhcc-CCcCcccchHHHHhccCCCC
Confidence 111 1223445544432 2233332 1 11 12334568999999965 79999999999999999997
Q ss_pred CC
Q 026617 230 PA 231 (236)
Q Consensus 230 ~~ 231 (236)
++
T Consensus 275 ~~ 276 (620)
T PLN02869 275 KS 276 (620)
T ss_pred CC
Confidence 64
No 6
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.24 E-value=1.7e-11 Score=109.03 Aligned_cols=138 Identities=20% Similarity=0.215 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCCC--CCCccccchhHHHHHHHHHHHHHHHh
Q 026617 81 PYLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPM--DGLRLVFPPAGAALVSLALWNLIDVL 158 (236)
Q Consensus 81 ~~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P~--D~~RlvfpP~~~~~~~~~~~~l~~~l 158 (236)
+-..+...++-+++.|+.-||.||.+ |.+. +++++|..||+... --..+.|.|+-.++-+. -+.+..++
T Consensus 125 w~~~~~~i~~flfF~Df~iYw~HR~l-H~~~-------vy~~LH~~HH~~~~~tpfAslafhpidg~lqai-p~~I~~Fi 195 (312)
T KOG0872|consen 125 WFLLFVSIFLFLFFTDFGIYWAHREL-HHRG-------VYKRLHKPHHIWNICTPFASLAFHPIDGFLQAI-PYHIYPFI 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhH-------HHhhhcchhhhhhccCchhhhhcCcchhHhhhc-hhHheeee
Confidence 34445555566889999999999976 6654 79999999998632 22357788877654333 24444445
Q ss_pred hcchhHHHHHHHHHHHH-HHHHHHHHHhhcCCCChhHhhhhhhhhhccCCCCCCCCcccchhhhhhhcCCCCCCcc
Q 026617 159 TKPFITPALYGGILLGY-VMYDVTHYYTHHGKPSKGIILRLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPPAKA 233 (236)
Q Consensus 159 ~~~~~a~~~~~g~l~gy-l~Yd~~Hy~~H~~~p~~~~~~~lk~~H~~HH~~~~~~nFGvt~~~WD~lFGT~~~~~~ 233 (236)
+|-... ...+...-- +.--.+|-.+|-. ..+.-....+|..||-. .++|||-.+.+|||+|||+..++.
T Consensus 196 ~Plh~~--t~L~l~~f~~iwt~~IHd~~~~~---l~~~ingaahHtvHH~~-f~~NYG~~tilwDrmfgSfr~p~~ 265 (312)
T KOG0872|consen 196 FPLHKV--TYLSLFTFVNIWTISIHDGIYGS---LNPPINGAAHHTVHHTY-FDYNYGQYTILWDRMFGSFRAPDH 265 (312)
T ss_pred ecchHH--HHHHHHHHHHhHheeeecccccc---ccCccccccccceeeee-EecCCCcEEEeHHhccCcccCccc
Confidence 552111 111110000 1111245544433 13344668999999965 799999999999999999986554
No 7
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=99.05 E-value=7.3e-10 Score=99.31 Aligned_cols=133 Identities=17% Similarity=0.090 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcC--CCCCCccccchhHHHHHHHHHHHHHHHhh
Q 026617 82 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKH--PMDGLRLVFPPAGAALVSLALWNLIDVLT 159 (236)
Q Consensus 82 ~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~--P~D~~RlvfpP~~~~~~~~~~~~l~~~l~ 159 (236)
...+.-.++.+++-|+.-|+.|| +||.+ .+++.+|.+||.. |..-.....+|.+.+..+++...... ++
T Consensus 118 ~~~l~~l~i~~liEd~~fY~~HR-L~H~~-------~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~p~-~~ 188 (283)
T KOG0873|consen 118 KEMLAQLVVFFLIEDIGFYWSHR-LFHHK-------WLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMGPA-LL 188 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhcch-------HHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhhhH-Hh
Confidence 34556678889999999999999 78943 2788999999986 44434566888886554432222111 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcC--CCChhHhhh-----hhhhhhccCCCCCCCCcccchhhhhhhcCCCCC
Q 026617 160 KPFITPALYGGILLGYVMYDVTHYYTHHG--KPSKGIILR-----LKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 230 (236)
Q Consensus 160 ~~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~--~p~~~~~~~-----lk~~H~~HH~~~~~~nFGvt~~~WD~lFGT~~~ 230 (236)
+...... ......-..+..-+|. ..|...-|- -.++|..||.. ...||.-++..|||++||.+.
T Consensus 189 ~~H~~t~------wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~-f~~n~~~~f~~~D~i~GTd~~ 259 (283)
T KOG0873|consen 189 CGHVITL------WIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLV-FIGNFASVFGYLDRIHGTDST 259 (283)
T ss_pred hhHHHHH------HHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhh-ccccccchhHHHHHHhccCcc
Confidence 1111100 0011122233333443 222222222 35999999976 488999999999999999874
No 8
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=98.73 E-value=1.6e-09 Score=94.11 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcC--CCCCCccccchhHHHHHHHHHHHHHHHhhc
Q 026617 83 LAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKH--PMDGLRLVFPPAGAALVSLALWNLIDVLTK 160 (236)
Q Consensus 83 ~~~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~--P~D~~RlvfpP~~~~~~~~~~~~l~~~l~~ 160 (236)
.....+++|+++-|.++|.+||+ +|... .++..+|.+||.. |..--.|.=+|++.+++-.+-..+..++.|
T Consensus 121 v~A~q~f~aflviDtWQYF~HRy-mH~NK------~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~sg 193 (287)
T KOG0874|consen 121 VLARQFFAAFLVIDTWQYFLHRY-MHMNK------FLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLSG 193 (287)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHH------HHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHcC
Confidence 34556889999999999999995 69875 5788999999974 543334666788865432111111111111
Q ss_pred c--hhHHHHHHHHHHHHHHHHHHHHHhhcC-CCChhHhhhhhhhhhccCCC-CCCCCcccch-hhhhhhcCCCCCC
Q 026617 161 P--FITPALYGGILLGYVMYDVTHYYTHHG-KPSKGIILRLKRFHMNHHFR-IRDKGFGISS-SLWDIVFGTLPPA 231 (236)
Q Consensus 161 ~--~~a~~~~~g~l~gyl~Yd~~Hy~~H~~-~p~~~~~~~lk~~H~~HH~~-~~~~nFGvt~-~~WD~lFGT~~~~ 231 (236)
- ..+..+| .+...=..= -|+-.=.+ +|-.-++.+-.++|..||-. ..++||.--+ .+||+++||+.|.
T Consensus 194 lspr~aiifF-tfaTiKTVD--DHCGy~lP~dpfqm~F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~ 266 (287)
T KOG0874|consen 194 LSPRTAIIFF-TFATIKTVD--DHCGYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPY 266 (287)
T ss_pred CCccceEEEE-Eeeeeeeec--cccccccCCCceeEeccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCc
Confidence 1 1111110 000000000 01111111 33334466778999999953 3567887554 6999999999764
No 9
>PLN02601 beta-carotene hydroxylase
Probab=98.51 E-value=1.2e-06 Score=78.16 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCCCCCCc--cccchhHHHHHHHHHHHHHHHh-hcc
Q 026617 85 GLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPMDGLR--LVFPPAGAALVSLALWNLIDVL-TKP 161 (236)
Q Consensus 85 ~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P~D~~R--lvfpP~~~~~~~~~~~~l~~~l-~~~ 161 (236)
++.++.+++...++-++.||+++|.. .|.+|..||+.-..... =+|--+. ++++..+... ... -+.
T Consensus 137 ~al~lgtfvgMEf~Aw~aHKYvMHG~---------LW~lH~sHH~Pr~g~FE~NDlFaVif-AvpAIaL~~~-G~~~~g~ 205 (303)
T PLN02601 137 FALSVGAAVGMEFWARWAHRALWHDS---------LWNMHESHHKPREGAFELNDVFAIVN-AVPAIGLLYY-GFFNKGL 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------chhhhhhcCCCCCCCcccccchhhhh-HHHHHHHHHH-hhccccc
Confidence 34556677778888899999999974 57889999964211111 0111111 1222211111 111 011
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHhhcCC------CChhHhhhhhhhhhccCC-CCCCCCccc
Q 026617 162 --FITPALYGGILLGYVMYDVTHYYTHHGK------PSKGIILRLKRFHMNHHF-RIRDKGFGI 216 (236)
Q Consensus 162 --~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~------p~~~~~~~lk~~H~~HH~-~~~~~nFGv 216 (236)
.....+-+|+.+.-++|-++|-.+=|.+ ++.+|+|++++-|..||. |+...+||.
T Consensus 206 ~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 206 VPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 1222334555555568888887444433 455899999999999997 223356664
No 10
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=97.09 E-value=0.0014 Score=55.73 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCChhHhhhh--------hhhhhccCCCCCCCCcccchhhhhhhcCC
Q 026617 176 VMYDVTHYYTHHGKPSKGIILRL--------KRFHMNHHFRIRDKGFGISSSLWDIVFGT 227 (236)
Q Consensus 176 l~Yd~~Hy~~H~~~p~~~~~~~l--------k~~H~~HH~~~~~~nFGvt~~~WD~lFGT 227 (236)
.+-+-+|-+.|..+.+.++.+.| |++|..||-...|.||.+++.+|+.+...
T Consensus 96 ~~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~ 155 (178)
T PF10520_consen 96 AFTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDK 155 (178)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCcccCCeEeecccchHHHHH
Confidence 34456799999853233444433 78999999887899999999999987643
No 11
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.082 Score=47.26 Aligned_cols=137 Identities=20% Similarity=0.267 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccccCc------cch-hHHHHHHhhcCCCcCCCCCCccccchhHHHH-HHHHHHH
Q 026617 82 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK------SYW-GNTFHYLIHGCHHKHPMDGLRLVFPPAGAAL-VSLALWN 153 (236)
Q Consensus 82 ~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~------~~~-~~~~~~~~Hg~HH~~P~D~~RlvfpP~~~~~-~~~~~~~ 153 (236)
....+..++|+++-||..=++| +-.+ .|+ ++.+- + -.-||++|..-.|=-|--..-++ .+.-+..
T Consensus 107 ~~~~La~~aG~i~AD~~SGl~H-----WaaD~~Gsv~tP~vG~~f~-r-freHH~dP~tITr~~f~~~~~ll~~a~~f~v 179 (293)
T KOG3011|consen 107 LEPALAAYAGYITADLGSGVYH-----WAADNYGSVSTPWVGRQFE-R-FQEHHKDPWTITRRQFANNLHLLARAYTFIV 179 (293)
T ss_pred HHHHHHHHHHHHHHhhhcceeE-----eeccccCccccchhHHHHH-H-HHhccCCcceeeHHHHhhhhHHHHHhheeEe
Confidence 3445667899999999875554 4332 233 33333 2 77899999665442221111000 0111110
Q ss_pred H-HHHhhcchhHHHHHHHHHHHHHHHHHHHHHhhcC-C-CCh-hHhhh-----hhhhhhccCCCCCCCCcccchhhhhhh
Q 026617 154 L-IDVLTKPFITPALYGGILLGYVMYDVTHYYTHHG-K-PSK-GIILR-----LKRFHMNHHFRIRDKGFGISSSLWDIV 224 (236)
Q Consensus 154 l-~~~l~~~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~-~-p~~-~~~~~-----lk~~H~~HH~~~~~~nFGvt~~~WD~l 224 (236)
+ .-++.....--.+...+.+-.++-+-+|-+.|.. + |+. -.+.. -|++|+.||-..++.||-|++-+|.++
T Consensus 180 ~~~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~~ 259 (293)
T KOG3011|consen 180 LPLDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNWV 259 (293)
T ss_pred cCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCccccceEEeechhhch
Confidence 0 1112211111122222222233445578888864 2 332 12233 279999999988999999999999876
Q ss_pred c
Q 026617 225 F 225 (236)
Q Consensus 225 F 225 (236)
.
T Consensus 260 L 260 (293)
T KOG3011|consen 260 L 260 (293)
T ss_pred H
Confidence 4
No 12
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.48 E-value=0.035 Score=52.86 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred hhhhhhccCCCCCCCCcccchhhhhhhcCCCCC
Q 026617 198 LKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 230 (236)
Q Consensus 198 lk~~H~~HH~~~~~~nFGvt~~~WD~lFGT~~~ 230 (236)
-+.+|-.||+.+.+.-|+-+.++-|+..||...
T Consensus 143 ~~~~h~rh~~~~~~~~~~~~~~~~d~~~~ta~s 175 (406)
T PRK07424 143 NRPYHWRHHFDNQNAYYCGTFTLVDKLMGTALS 175 (406)
T ss_pred cCceeEEEEeccccceeeeeEEEeehhcCcccC
Confidence 359999999999999999999999999999764
No 13
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=93.24 E-value=5.3 Score=36.76 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccCc
Q 026617 84 AGLIVFLGIITWTLLEYFLHRYLFHIKTK 112 (236)
Q Consensus 84 ~~~~~~~g~~~w~l~EY~lHRflfH~~~~ 112 (236)
+.+.+.+|++.-.+.-=..|. +.|+.++
T Consensus 73 ~~~~~~~G~~~g~i~~~~aHe-l~Hr~~~ 100 (314)
T cd03512 73 VGLILSLGLLSGVIGINTAHE-LIHRRSR 100 (314)
T ss_pred HHHHHHHHHHHHHhhHHHHHh-ccCCCCh
Confidence 334556666665444446677 5576554
No 14
>PLN02601 beta-carotene hydroxylase
Probab=90.99 E-value=1 Score=40.95 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhh-ccchhhHHHHHHHHHHHHHHHHHHHhhhhhccccCc------cchhHHHHHHhhcCCCcCCCC
Q 026617 61 LVWLPVVCWSVSKSVK-MGLAPYLAGLIVFLGIITWTLLEYFLHRYLFHIKTK------SYWGNTFHYLIHGCHHKHPMD 133 (236)
Q Consensus 61 ~vw~p~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~------~~~~~~~~~~~Hg~HH~~P~D 133 (236)
++...+++.+++.+.. .+..... .....+|+.++-+.+.++|-.+.|.+-+ ++.. +-..+.|.+||+...+
T Consensus 186 VifAvpAIaL~~~G~~~~g~~p~~-~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~-rrl~~AHklHHa~Ke~ 263 (303)
T PLN02601 186 IVNAVPAIGLLYYGFFNKGLVPGL-CFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYL-RKVAAAHQLHHTDKFK 263 (303)
T ss_pred hhhHHHHHHHHHHhhccccccHHH-HHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHH-HHHHHHHHhhccCCcC
Confidence 5566677777777763 3333222 2345799999999999999999998743 2223 3345889999995444
Q ss_pred C--CccccchhH
Q 026617 134 G--LRLVFPPAG 143 (236)
Q Consensus 134 ~--~RlvfpP~~ 143 (236)
. ..+++.|..
T Consensus 264 Gv~FGfll~P~e 275 (303)
T PLN02601 264 GVPYGLFLGPKE 275 (303)
T ss_pred CccceEEeccHH
Confidence 3 234444544
No 15
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=90.14 E-value=0.032 Score=46.91 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=39.7
Q ss_pred Hhhhhh-hHHHHHHhhccCCCCCCCccCCcchhhhhcCCcchhhHHHHHHHHHHHHHhhh
Q 026617 17 FQVGHL-GEAYEEWVHQPIVGKDSPRFFANGFMEFLTRTKWWVIPLVWLPVVCWSVSKSV 75 (236)
Q Consensus 17 ~qv~~~-~~~y~~~v~~p~~~~~~~rlF~n~~lE~~t~t~~~~~p~vw~p~~~~~~~~~~ 75 (236)
.|+++| ++.|..+||+| ++++.+| +|+|+.++..|+|++++-.....
T Consensus 110 ~~~~~llk~~yv~~v~r~---~~~l~~~---------~t~~~p~k~s~~~~Vv~~~~~~~ 157 (164)
T COG5274 110 HQIGNLLKDVYVDQVHRP---EEELPLF---------KTAWYPLKVSWVPVVVYRGLAAC 157 (164)
T ss_pred hhHHhhhhceeeecccCc---ccccccc---------cccccccccceeeEEEeeeeeee
Confidence 788888 59999999999 5677777 89999999999999887665543
No 16
>PLN02434 fatty acid hydroxylase
Probab=84.53 E-value=4.3 Score=36.13 Aligned_cols=44 Identities=20% Similarity=0.070 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCC
Q 026617 83 LAGLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHP 131 (236)
Q Consensus 83 ~~~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P 131 (236)
.+.+..++|.+++|.+-|.+|. .++++++. +-.++.|..||...
T Consensus 165 ~~~~G~l~gYl~Yd~~Hy~lH~----~~p~~~~~-r~lkr~H~~HHfk~ 208 (237)
T PLN02434 165 ALFGGGLLGYVMYDCTHYFLHH----GQPSTDVL-RNLKKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----cCcchHHH-HHHHHHHHHHcCCC
Confidence 3445578899999999999996 34544443 46789999999753
No 17
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=75.21 E-value=13 Score=31.74 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccC-ccchhHHHH-------HHhhcCCCcCCCCC
Q 026617 87 IVFLGIITWTLLEYFLHRYLFHIKT-KSYWGNTFH-------YLIHGCHHKHPMDG 134 (236)
Q Consensus 87 ~~~~g~~~w~l~EY~lHRflfH~~~-~~~~~~~~~-------~~~Hg~HH~~P~D~ 134 (236)
+|+..+.++-.+-=-+|++. |... ..++...+. .+.|+.||..|.|.
T Consensus 86 ~f~~~~~~~v~~tnq~HkWs-H~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh~~ 140 (178)
T PF10520_consen 86 CFLFSFAFFVAFTNQFHKWS-HTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPHDT 140 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHCCcccCchhhhccccCcccC
Confidence 34444444444444568854 8733 233333333 47899999999774
No 18
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=71.41 E-value=8.9 Score=33.81 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCcCCCC
Q 026617 85 GLIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHKHPMD 133 (236)
Q Consensus 85 ~~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~~P~D 133 (236)
.+.-++|.+.+|..-|.+| |.+++++...+-.+.-|-.||..-.|
T Consensus 169 faG~l~GYV~YDmtHYyLH----hg~p~~~~~~~~lK~yHl~HHfk~q~ 213 (240)
T KOG0539|consen 169 FAGGLLGYVCYDMTHYYLH----HGSPPKRPYLKHLKKYHLNHHFKHQD 213 (240)
T ss_pred hccchhhhhhhhhhhhhhh----cCCCCCchHHHHHHHHHhhhhhhccc
Confidence 3445688999999888777 77775545556678889999976555
No 19
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=70.52 E-value=25 Score=32.67 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHHHH-HHH---HHHHHhhcC--CC-------ChhHhhh----hhhhhhccCCCC-------CCCCcc
Q 026617 160 KPFITPALYGGILLGYV-MYD---VTHYYTHHG--KP-------SKGIILR----LKRFHMNHHFRI-------RDKGFG 215 (236)
Q Consensus 160 ~~~~a~~~~~g~l~gyl-~Yd---~~Hy~~H~~--~p-------~~~~~~~----lk~~H~~HH~~~-------~~~nFG 215 (236)
+.+.+.+++.| +++++ .+. +++.+.|.. +| ++.++-. --..|..||--. +.+-++
T Consensus 207 ~~~~~~~~~~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~~y~~d 285 (321)
T KOG1600|consen 207 GEGMGLAFYVG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEEWYQLD 285 (321)
T ss_pred eecchhhhhHH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhHHhhhC
Confidence 33455667777 44443 444 356777764 22 2222111 246899999532 235677
Q ss_pred cchhhhhh
Q 026617 216 ISSSLWDI 223 (236)
Q Consensus 216 vt~~~WD~ 223 (236)
+|..+.|-
T Consensus 286 ~T~~~I~~ 293 (321)
T KOG1600|consen 286 ITWYLIDF 293 (321)
T ss_pred cchHHHHH
Confidence 88877764
No 20
>PLN02220 delta-9 acyl-lipid desaturase
Probab=68.80 E-value=96 Score=28.52 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=12.2
Q ss_pred hhhhhccCCCCCCCCccc
Q 026617 199 KRFHMNHHFRIRDKGFGI 216 (236)
Q Consensus 199 k~~H~~HH~~~~~~nFGv 216 (236)
-..|..||--..+..+|+
T Consensus 243 EgwHNnHHafP~sar~G~ 260 (299)
T PLN02220 243 ESWHNNHHAFESSARQGL 260 (299)
T ss_pred ccccccccCCccchhhCC
Confidence 359999996544555553
No 21
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=62.46 E-value=38 Score=30.29 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhHhhhhhhhhhccCCCC
Q 026617 168 YGGILLGYVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHFRI 209 (236)
Q Consensus 168 ~~g~l~gyl~Yd~~Hy~~H~~~p~~~~~~~lk~~H~~HH~~~ 209 (236)
....+++.++.|...|..|.-.= ..+.+++.|..||...
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~H---~~~~~w~~H~~HH~~~ 134 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLLH---RVPLLWAFHKVHHSSE 134 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhhcCcc
Confidence 44455555666655555553211 1245678999999754
No 22
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=58.60 E-value=56 Score=29.64 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhHh---------------hhhhhhhhccCC
Q 026617 165 PALYGGILLGYVMYDVTHYYTHHGKPSKGII---------------LRLKRFHMNHHF 207 (236)
Q Consensus 165 ~~~~~g~l~gyl~Yd~~Hy~~H~~~p~~~~~---------------~~lk~~H~~HH~ 207 (236)
...+++++++...+.+.|-+.|..-.++++. ...+..|..||.
T Consensus 29 ~~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~~~l~~p~~~wr~~H~~HH~ 86 (288)
T cd03509 29 LATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPPLALWYPYTRYRDTHLAHHR 86 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 3445555556666778888888753222111 123678899995
No 23
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=51.99 E-value=1.1e+02 Score=28.08 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCc----------------cchhHHHHH--HhhcCCCcCCC
Q 026617 83 LAGLIVFLGIITWTLLEYFLHRYLFHIKTK----------------SYWGNTFHY--LIHGCHHKHPM 132 (236)
Q Consensus 83 ~~~~~~~~g~~~w~l~EY~lHRflfH~~~~----------------~~~~~~~~~--~~Hg~HH~~P~ 132 (236)
.+++..+.|...-.+..|+=|--+--.+.+ ....+-+.| .-|..||..|.
T Consensus 207 ~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~ 274 (314)
T cd03512 207 FLLIQAFYAKSLLELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPT 274 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCC
Confidence 344556677777788889899765433221 234444555 45999999874
No 24
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=43.97 E-value=94 Score=26.56 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCh----hHh------------hhhhhhhhccCCC
Q 026617 169 GGILLGYVMYDVTHYYTHHGKPSK----GII------------LRLKRFHMNHHFR 208 (236)
Q Consensus 169 ~g~l~gyl~Yd~~Hy~~H~~~p~~----~~~------------~~lk~~H~~HH~~ 208 (236)
.++++.+..+-+.|-+.|..-.++ +++ ...|..|..||..
T Consensus 30 ~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~ 85 (207)
T cd03514 30 LNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAH 85 (207)
T ss_pred HHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence 333444556666677777641111 111 2347899999964
No 25
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=39.21 E-value=1.5e+02 Score=21.90 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccccCc
Q 026617 80 APYLAGLIVFLGIITWTLLEYFLHRYLFHIKTK 112 (236)
Q Consensus 80 ~~~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~ 112 (236)
+....++.+++|++++-.--+.+=-|++|++.+
T Consensus 35 p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRK 67 (77)
T PF11118_consen 35 PFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRK 67 (77)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHhheeecc
Confidence 335668899999999999999999999998865
No 26
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=38.77 E-value=98 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCh----hHh------------hhhhhhhhccCCC
Q 026617 167 LYGGILLGYVMYDVTHYYTHHGKPSK----GII------------LRLKRFHMNHHFR 208 (236)
Q Consensus 167 ~~~g~l~gyl~Yd~~Hy~~H~~~p~~----~~~------------~~lk~~H~~HH~~ 208 (236)
++.|.+.+ .++.+.|-+.|..--++ .++ ...+..|..||..
T Consensus 49 ~~~g~~~~-~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~ 105 (285)
T cd03511 49 LVYGVLYA-ALFARWHECVHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRY 105 (285)
T ss_pred HHHHHHHH-HHHHHHHHhhcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Confidence 34444444 45667788888752111 111 1237789999963
No 27
>PLN02579 sphingolipid delta-4 desaturase
Probab=35.71 E-value=1.5e+02 Score=27.40 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.8
Q ss_pred hhhhhhccCCC
Q 026617 198 LKRFHMNHHFR 208 (236)
Q Consensus 198 lk~~H~~HH~~ 208 (236)
.+++|..||..
T Consensus 126 ~~~~H~~HH~~ 136 (323)
T PLN02579 126 FQKYHLEHHRF 136 (323)
T ss_pred HHHHHHHHccC
Confidence 46889999964
No 28
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=35.33 E-value=1.2e+02 Score=25.21 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.5
Q ss_pred hhhhhhccCCC
Q 026617 198 LKRFHMNHHFR 208 (236)
Q Consensus 198 lk~~H~~HH~~ 208 (236)
.|+.|..||..
T Consensus 73 ~r~~H~~HH~~ 83 (175)
T cd03510 73 YRRSHLKHHRH 83 (175)
T ss_pred HHHHHHHHhCc
Confidence 46899999953
No 29
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=35.15 E-value=1.3e+02 Score=24.36 Aligned_cols=17 Identities=41% Similarity=0.764 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhccc
Q 026617 93 ITWTLLEYFLHRYLFHI 109 (236)
Q Consensus 93 ~~w~l~EY~lHRflfH~ 109 (236)
++-...||..||++...
T Consensus 96 ~~i~v~E~fFH~yl~~~ 112 (136)
T PF10710_consen 96 VLIGVGEYFFHRYLLRN 112 (136)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 45667899999987433
No 30
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=34.44 E-value=48 Score=31.65 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChhHhhhhhhhhhccCC
Q 026617 172 LLGYVMYDVTHYYTHHGKPSKGIILRLKRFHMNHHF 207 (236)
Q Consensus 172 l~gyl~Yd~~Hy~~H~~~p~~~~~~~lk~~H~~HH~ 207 (236)
+..=+..|..|+..|..+ ++.|.|..||-
T Consensus 17 ~~~~~~~d~~h~~~h~~~-------~l~~~h~~hh~ 45 (406)
T PRK07424 17 LWVEIVRDSYHALAHQWN-------PLYRLHNWHHR 45 (406)
T ss_pred HHHHHHHHHHHHHHhhch-------HHHHHHHhHHh
Confidence 344467888899999864 78889999994
No 31
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=33.83 E-value=1.9e+02 Score=25.61 Aligned_cols=12 Identities=25% Similarity=0.348 Sum_probs=9.2
Q ss_pred HHHhhcCCCcCC
Q 026617 120 HYLIHGCHHKHP 131 (236)
Q Consensus 120 ~~~~Hg~HH~~P 131 (236)
+...|-.||+.+
T Consensus 95 ~~~~H~~HH~~~ 106 (285)
T cd03511 95 FRWSHARHHRYT 106 (285)
T ss_pred HHHHHHHHhcCc
Confidence 356789999876
No 32
>PRK11056 hypothetical protein; Provisional
Probab=33.01 E-value=1.6e+02 Score=23.65 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=30.9
Q ss_pred cCCcchhhHHHHHHHHHHHHHhhh-----hccchhhHHHHHHHHHHHHHHHH
Q 026617 52 TRTKWWVIPLVWLPVVCWSVSKSV-----KMGLAPYLAGLIVFLGIITWTLL 98 (236)
Q Consensus 52 t~t~~~~~p~vw~p~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~w~l~ 98 (236)
|-+++.+.|++=+-.++|+++.-. ..|. +...+++|++|++.++.+
T Consensus 32 s~VpFSiFPlIaLvLavycLyQ~Yl~~~m~eg~-P~~a~acFflG~f~ySA~ 82 (120)
T PRK11056 32 SIVPFSIFPLIALVLAVYCLHQRYLNRPMPEGL-PGLAAACFFLGVFLYSAF 82 (120)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCCC-hHHHHHHHHHHHHHHHHH
Confidence 345677888887777888887643 1222 345577888998887753
No 33
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=30.86 E-value=1.8e+02 Score=23.21 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=30.9
Q ss_pred cCCcchhhHHHHHHHHHHHHHhhhh-----ccchhhHHHHHHHHHHHHHHHH
Q 026617 52 TRTKWWVIPLVWLPVVCWSVSKSVK-----MGLAPYLAGLIVFLGIITWTLL 98 (236)
Q Consensus 52 t~t~~~~~p~vw~p~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~w~l~ 98 (236)
|-.++.+.|++=+-.++|+++.-.. .+. +...+++|++|++.++..
T Consensus 32 s~VpFSiFPlIaLvLavy~LyQ~Yl~~~m~eg~-P~~a~acFflG~f~ySA~ 82 (117)
T PF07226_consen 32 SEVPFSIFPLIALVLAVYCLYQRYLNHPMPEGT-PKLALACFFLGLFGYSAF 82 (117)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCCC-hHHHHHHHHHHHHHHHHH
Confidence 3456778888877778888876431 222 345577888998887753
No 34
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=30.00 E-value=1.9e+02 Score=26.79 Aligned_cols=50 Identities=28% Similarity=0.257 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccccCc-cchhH--------------HHHHHh-hcCCCcCCC
Q 026617 82 YLAGLIVFLGIITWTLLEYFLHRYLFHIKTK-SYWGN--------------TFHYLI-HGCHHKHPM 132 (236)
Q Consensus 82 ~~~~~~~~~g~~~w~l~EY~lHRflfH~~~~-~~~~~--------------~~~~~~-Hg~HH~~P~ 132 (236)
...+++++.+-++.+...=+.|- ..|.... +++.+ ...||. |-.||.+.+
T Consensus 62 ~~~~l~~~~~~~~l~~~~~v~Hd-~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~ 127 (343)
T COG3239 62 WLLPLALLLAGLLLTGLFSVGHD-CGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTN 127 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-ccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccC
Confidence 33344555555545555556666 4565321 12221 223555 999999764
No 35
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=29.28 E-value=2.3e+02 Score=20.71 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCccchhHHHHHHhhcCCCc
Q 026617 86 LIVFLGIITWTLLEYFLHRYLFHIKTKSYWGNTFHYLIHGCHHK 129 (236)
Q Consensus 86 ~~~~~g~~~w~l~EY~lHRflfH~~~~~~~~~~~~~~~Hg~HH~ 129 (236)
..+.+++++..+.+-+.|--+....++.......--+.|..||+
T Consensus 71 ~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 71 LAFLLGIALFYLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHHHHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 44567777788888888885512222111111223477888884
No 36
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=27.64 E-value=2.6e+02 Score=25.41 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHHHHHHHHhhcCCCChhHhhhh-----------------hhh
Q 026617 142 AGAALVSLALWNLIDVLTKPFI---TPALYGGILLGYVMYDVTHYYTHHGKPSKGIILRL-----------------KRF 201 (236)
Q Consensus 142 ~~~~~~~~~~~~l~~~l~~~~~---a~~~~~g~l~gyl~Yd~~Hy~~H~~~p~~~~~~~l-----------------k~~ 201 (236)
+..+++.+.+.....+.....+ ..+...|+.....++-..|-+.|..-.+++...+. |.+
T Consensus 21 ~~~~~v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~~~~~g~p~~~~~r~~ 100 (289)
T cd03508 21 VVLGVVLLQIITAYLLRDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFANLPIGVPYSISFKKY 100 (289)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHHHHHhcCChhhHHHHH
Q ss_pred hhccC
Q 026617 202 HMNHH 206 (236)
Q Consensus 202 H~~HH 206 (236)
|..||
T Consensus 101 H~~HH 105 (289)
T cd03508 101 HLEHH 105 (289)
T ss_pred HHHhc
No 37
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=27.57 E-value=1.6e+02 Score=25.39 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=8.6
Q ss_pred hhhhhhccCCC
Q 026617 198 LKRFHMNHHFR 208 (236)
Q Consensus 198 lk~~H~~HH~~ 208 (236)
-|+.|..||..
T Consensus 84 w~~~H~~HH~~ 94 (222)
T cd03507 84 WRISHNRHHAH 94 (222)
T ss_pred HHHHHHHHHhc
Confidence 37889999964
No 38
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=24.78 E-value=3.5e+02 Score=26.40 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcccc-Cccc----hh----------H--HHHHHhhcCCCcCCC
Q 026617 82 YLAGLIVFLGIITWTLLEYFLHRYLFHIK-TKSY----WG----------N--TFHYLIHGCHHKHPM 132 (236)
Q Consensus 82 ~~~~~~~~~g~~~w~l~EY~lHRflfH~~-~~~~----~~----------~--~~~~~~Hg~HH~~P~ 132 (236)
..++..+++|+....+. .+.|-. -|.. .+++ +. . .+...-|-.||.+|+
T Consensus 160 ~~~l~aillg~~~~~~g-~l~HDa-~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN 225 (485)
T PLN03199 160 MHIASALLLGLFFQQCG-WLAHDF-LHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPN 225 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhh-hhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcC
Confidence 34556677777777776 588774 3532 1111 10 0 233456899999886
No 39
>PRK13875 conjugal transfer protein TrbL; Provisional
Probab=24.21 E-value=78 Score=30.79 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=7.0
Q ss_pred cCCChhHHhhhhh
Q 026617 10 DLNKPLVFQVGHL 22 (236)
Q Consensus 10 d~~kpl~~qv~~~ 22 (236)
|..+|++.|++++
T Consensus 117 da~~~il~~is~l 129 (440)
T PRK13875 117 DAGRPLLESISDL 129 (440)
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555544
No 40
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=22.61 E-value=1.5e+02 Score=24.27 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhcC
Q 026617 176 VMYDVTHYYTHHG 188 (236)
Q Consensus 176 l~Yd~~Hy~~H~~ 188 (236)
.+..+.|.+.|..
T Consensus 19 ~~~~~~H~~~H~~ 31 (257)
T PF00487_consen 19 RLFGLAHDAGHGA 31 (257)
T ss_pred HHHHHHHHHhccC
Confidence 4555678888873
No 41
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=22.23 E-value=2.3e+02 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhcCCCChhHhh----------------hhhhhhhccCC
Q 026617 175 YVMYDVTHYYTHHGKPSKGIIL----------------RLKRFHMNHHF 207 (236)
Q Consensus 175 yl~Yd~~Hy~~H~~~p~~~~~~----------------~lk~~H~~HH~ 207 (236)
-......|-+.|-.-.+++++. .-|..|..||-
T Consensus 76 ~~~~~v~Hd~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~ 124 (343)
T COG3239 76 TGLFSVGHDCGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHA 124 (343)
T ss_pred HHHHhhhhhccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhc
Confidence 3455567777775422223322 23566999995
No 42
>PRK10062 hypothetical protein; Provisional
Probab=20.73 E-value=1.9e+02 Score=26.81 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHH----HHHHhhc
Q 026617 150 ALWNLIDVLTKPFITPALYGGILLGYVMYDV----THYYTHH 187 (236)
Q Consensus 150 ~~~~l~~~l~~~~~a~~~~~g~l~gyl~Yd~----~Hy~~H~ 187 (236)
|..+++..+.|+........| ..|+|||- .|...|+
T Consensus 74 P~ALllSafaPw~itpLLMlG--G~yLcfEGaEKv~~~~~~~ 113 (303)
T PRK10062 74 PLALIISAFIPWAITPLLMIG--GAFLCFEGVEKVLHMLEAR 113 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--HHHHHHhhHHHHHHHHccC
Confidence 444455555555444444444 35899994 4665554
No 43
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=1.1e+02 Score=24.76 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.3
Q ss_pred hhhhhcCCcchhhHHHHHHHHHHHHHhhhh
Q 026617 47 FMEFLTRTKWWVIPLVWLPVVCWSVSKSVK 76 (236)
Q Consensus 47 ~lE~~t~t~~~~~p~vw~p~~~~~~~~~~~ 76 (236)
+.|.-.+-+-|+-.++|+|..+.+....++
T Consensus 77 ~~e~~~~~p~W~hl~vw~P~~~~~sL~~lr 106 (126)
T COG5349 77 WVEVTLNPPLWVHLLVWLPLTLALSLLLLR 106 (126)
T ss_pred hhhhccCCCchhhhHHHHHHHHHHHHHhhh
Confidence 567777888889999999998888776664
No 44
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=20.57 E-value=1.8e+02 Score=26.78 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=21.2
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHH----HHHHhhcC
Q 026617 150 ALWNLIDVLTKPFITPALYGGILLGYVMYDV----THYYTHHG 188 (236)
Q Consensus 150 ~~~~l~~~l~~~~~a~~~~~g~l~gyl~Yd~----~Hy~~H~~ 188 (236)
|.-+++..+.|+........|+ .|+|||- .|...|+.
T Consensus 74 P~ALllSafaPw~itplLmlGG--~yLcfEGaEKv~~~~~~~~ 114 (295)
T PF05661_consen 74 PAALLLSAFAPWAITPLLMLGG--AYLCFEGAEKVWHKFFHHK 114 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH--HHHHHhHHHHHHHHHcCCc
Confidence 4444555555554444444443 5899994 56666654
Done!