Query 026617
Match_columns 236
No_of_seqs 174 out of 782
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3u_B C5AR(P7-28S) peptide, c 23.8 29 0.00099 19.1 1.0 12 4-15 10-21 (26)
2 1pi7_A VPU protein, U ORF prot 15.9 1.5E+02 0.0052 17.8 3.1 17 85-101 12-30 (36)
3 2dw3_A Intrinsic membrane prot 12.4 2.3E+02 0.008 19.9 3.7 17 160-176 29-45 (77)
4 2lfw_B NEPR anti sigma factor; 12.1 77 0.0026 21.5 1.1 18 17-34 26-44 (62)
5 2k1o_A Putative; repressor, tr 11.0 53 0.0018 22.2 -0.0 18 201-220 5-22 (66)
6 2vgp_C Inner centromere protei 10.7 94 0.0032 19.4 1.1 12 221-232 24-35 (43)
7 2knc_A Integrin alpha-IIB; tra 10.5 3.8E+02 0.013 17.5 4.2 32 79-110 10-41 (54)
8 2xq2_A Sodium/glucose cotransp 9.5 5.1E+02 0.018 24.1 6.3 14 86-99 458-471 (593)
9 2bbd_A Coat protein; archaea, 7.9 84 0.0029 26.8 0.0 11 196-206 340-350 (350)
10 3arc_E Cytochrome B559 subunit 6.6 3.6E+02 0.012 19.1 2.8 29 45-73 7-35 (83)
No 1
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=23.78 E-value=29 Score=19.09 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=10.1
Q ss_pred CCCccccCCChh
Q 026617 4 DEPFSVDLNKPL 15 (236)
Q Consensus 4 ~~~~~~d~~kpl 15 (236)
|.++.+|+|.|+
T Consensus 10 ddkdtldlntpv 21 (26)
T 2k3u_B 10 DDKDTLDLNTPV 21 (26)
T ss_dssp CSSSCCBTTCCC
T ss_pred CCccccccCCcc
Confidence 678899999885
No 2
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=15.88 E-value=1.5e+02 Score=17.79 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHH--HHHH
Q 026617 85 GLIVFLGIITWTL--LEYF 101 (236)
Q Consensus 85 ~~~~~~g~~~w~l--~EY~ 101 (236)
...+++.+++|++ .||-
T Consensus 12 ivalIiaIVVWtiv~ieYr 30 (36)
T 1pi7_A 12 VVAIIIAIVVWSIVIIEGR 30 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788899994 4664
No 3
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=12.37 E-value=2.3e+02 Score=19.90 Aligned_cols=17 Identities=18% Similarity=-0.017 Sum_probs=7.1
Q ss_pred cchhHHHHHHHHHHHHH
Q 026617 160 KPFITPALYGGILLGYV 176 (236)
Q Consensus 160 ~~~~a~~~~~g~l~gyl 176 (236)
|..+|.+++.|..+..+
T Consensus 29 GAg~AAv~f~~~~~~lv 45 (77)
T 2dw3_A 29 GAGWAGGVFFGTLLLIG 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 43444444444433333
No 4
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=12.13 E-value=77 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.5
Q ss_pred Hhh-hhhhHHHHHHhhccC
Q 026617 17 FQV-GHLGEAYEEWVHQPI 34 (236)
Q Consensus 17 ~qv-~~~~~~y~~~v~~p~ 34 (236)
.|| .+|+..|++-|.+|+
T Consensus 26 ~~Ig~~LR~~Yd~vv~E~V 44 (62)
T 2lfw_B 26 RDMGAALRSAYQKTIEEQV 44 (62)
T ss_dssp TTHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 467 577999999999998
No 5
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=10.98 E-value=53 Score=22.15 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=7.8
Q ss_pred hhhccCCCCCCCCcccchhh
Q 026617 201 FHMNHHFRIRDKGFGISSSL 220 (236)
Q Consensus 201 ~H~~HH~~~~~~nFGvt~~~ 220 (236)
+|..|| ..++||.|++-+
T Consensus 5 hhhhhh--gsk~~~~Vs~Y~ 22 (66)
T 2k1o_A 5 HHHHHH--GSKRNFSVTFYL 22 (66)
T ss_dssp ----------CCCEEEEEEE
T ss_pred cccccc--ccccceEEEEEe
Confidence 444444 457999998743
No 6
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=10.74 E-value=94 Score=19.45 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=8.5
Q ss_pred hhhhcCCCCCCc
Q 026617 221 WDIVFGTLPPAK 232 (236)
Q Consensus 221 WD~lFGT~~~~~ 232 (236)
-|.+||+..+.+
T Consensus 24 ~d~iFG~I~pp~ 35 (43)
T 2vgp_C 24 VDRMYGTIDSPK 35 (43)
T ss_dssp HHHHTTTSCCCC
T ss_pred HHHHcCCCCCcC
Confidence 478888876653
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.49 E-value=3.8e+02 Score=17.46 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 026617 79 LAPYLAGLIVFLGIITWTLLEYFLHRYLFHIK 110 (236)
Q Consensus 79 ~~~~~~~~~~~~g~~~w~l~EY~lHRflfH~~ 110 (236)
.+++.++++.++|+++..++-|.+-+.=|-.+
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 34455566777888888888888877555443
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=9.49 E-value=5.1e+02 Score=24.14 Aligned_cols=14 Identities=21% Similarity=0.062 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 026617 86 LIVFLGIITWTLLE 99 (236)
Q Consensus 86 ~~~~~g~~~w~l~E 99 (236)
...+.|++++-..+
T Consensus 458 ~g~i~G~~~~~~~~ 471 (593)
T 2xq2_A 458 IGVVASIPFALFLK 471 (593)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455655555443
No 9
>2bbd_A Coat protein; archaea, hyperthermophIle, evolution, crystal, viral; 2.04A {Sulfolobus turreted icosahedral virus}
Probab=7.87 E-value=84 Score=26.78 Aligned_cols=11 Identities=55% Similarity=0.939 Sum_probs=0.0
Q ss_pred hhhhhhhhccC
Q 026617 196 LRLKRFHMNHH 206 (236)
Q Consensus 196 ~~lk~~H~~HH 206 (236)
|++||||..||
T Consensus 340 ~~ikrhhhhhh 350 (350)
T 2bbd_A 340 RRIKRHHHHHH 350 (350)
T ss_dssp -----------
T ss_pred hhhhhccccCC
Confidence 57888888776
No 10
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=6.63 E-value=3.6e+02 Score=19.06 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=21.7
Q ss_pred cchhhhhcCCcchhhHHHHHHHHHHHHHh
Q 026617 45 NGFMEFLTRTKWWVIPLVWLPVVCWSVSK 73 (236)
Q Consensus 45 n~~lE~~t~t~~~~~p~vw~p~~~~~~~~ 73 (236)
-++.|.+|...+|++=.+=+|......|.
T Consensus 7 RpF~dIitsiRYWvIHsITIPslFiaGwL 35 (83)
T 3arc_E 7 RPFSDIITSVRYWVIHSITIPALFIAGWL 35 (83)
T ss_dssp CCHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhheeeeEEEEeeccchHHHhhhh
Confidence 46788889999999988877765554443
Done!