Query 026617
Match_columns 236
No_of_seqs 174 out of 782
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 17:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026617.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026617hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 34.5 28 0.002 23.2 4.7 32 39-74 53-84 (91)
2 d1yzma1 a.2.19.1 (A:456-501) F 10.7 42 0.003 19.9 1.0 20 13-33 2-21 (46)
3 d1ppji_ d.184.1.3 (I:) Ubiquin 9.4 38 0.0027 20.2 0.4 16 5-20 8-23 (47)
4 d2fyui1 d.184.1.3 (I:1-57) Ubi 7.4 54 0.0039 20.2 0.5 14 5-18 39-52 (57)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 6.1 3.4E+02 0.024 17.2 4.1 13 168-180 49-61 (75)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.1 3.3E+02 0.024 17.8 4.4 20 39-62 68-87 (107)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 5.7 3.7E+02 0.027 17.2 4.6 20 39-62 62-81 (100)
8 d2axte1 f.23.38.1 (E:3-84) Cyt 5.3 2.1E+02 0.015 18.6 2.6 28 45-72 6-33 (82)
9 d1gg3a3 d.15.1.4 (A:1-81) Eryt 4.7 1.6E+02 0.012 18.7 1.7 16 5-20 52-67 (81)
10 d2iuba2 f.17.3.1 (A:286-349) M 4.6 1.9E+02 0.014 17.2 2.1 26 45-75 3-28 (64)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=34.49 E-value=28 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCccCCcchhhhhcCCcchhhHHHHHHHHHHHHHhh
Q 026617 39 SPRFFANGFMEFLTRTKWWVIPLVWLPVVCWSVSKS 74 (236)
Q Consensus 39 ~~rlF~n~~lE~~t~t~~~~~p~vw~p~~~~~~~~~ 74 (236)
+++.-+|.-+|.. |+++|++-+-++++..+.+
T Consensus 53 ~~~~~~n~~lEi~----WtiIP~iil~~iav~s~~~ 84 (91)
T d1fftb2 53 SPNWSHSNKVEAV----VWTVPILIIIFLAVLTWKT 84 (91)
T ss_dssp CCCCCCCSHHHHH----TTHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCceehhh----HHHHHHHHHHHHHHHHHHH
Confidence 5678899999985 7788887444444444433
No 2
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.66 E-value=42 Score=19.95 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=14.2
Q ss_pred ChhHHhhhhhhHHHHHHhhcc
Q 026617 13 KPLVFQVGHLGEAYEEWVHQP 33 (236)
Q Consensus 13 kpl~~qv~~~~~~y~~~v~~p 33 (236)
.||+.|+.+++ .|.++-.+-
T Consensus 2 nPllqQi~~ik-~yI~QAk~a 21 (46)
T d1yzma1 2 SPLLQQIHNIT-SFIRQAKAA 21 (46)
T ss_dssp HHHHHHHHHHH-HHHHHHHHT
T ss_pred ChHHHHHHHHH-HHHHHHHHh
Confidence 49999999885 366665443
No 3
>d1ppji_ d.184.1.3 (I:) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.36 E-value=38 Score=20.17 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=8.3
Q ss_pred CCccccCCChhHHhhh
Q 026617 5 EPFSVDLNKPLVFQVG 20 (236)
Q Consensus 5 ~~~~~d~~kpl~~qv~ 20 (236)
++-.+|..||+++|=+
T Consensus 8 e~~vld~krpfLcrES 23 (47)
T d1ppji_ 8 ESPVLDLKLSVLCRES 23 (47)
T ss_dssp CCCCC-----CCSHHH
T ss_pred CCceEecccceeehhh
Confidence 5678899999999863
No 4
>d2fyui1 d.184.1.3 (I:1-57) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.41 E-value=54 Score=20.17 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.8
Q ss_pred CCccccCCChhHHh
Q 026617 5 EPFSVDLNKPLVFQ 18 (236)
Q Consensus 5 ~~~~~d~~kpl~~q 18 (236)
++-++|..||.+++
T Consensus 39 e~~vlD~KrpfLcR 52 (57)
T d2fyui1 39 ESPVLDLKRSVLCR 52 (57)
T ss_dssp CCCCSSSCCCCSCS
T ss_pred CCceeccCCceeeh
Confidence 45668999998875
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.07 E-value=3.4e+02 Score=17.15 Aligned_cols=13 Identities=15% Similarity=0.191 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 026617 168 YGGILLGYVMYDV 180 (236)
Q Consensus 168 ~~g~l~gyl~Yd~ 180 (236)
...++++|++|+|
T Consensus 49 ~PPfi~~Y~iy~W 61 (75)
T d1ppjg_ 49 APPFVAFYLVYTW 61 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4456889999998
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.06 E-value=3.3e+02 Score=17.78 Aligned_cols=20 Identities=30% Similarity=0.735 Sum_probs=13.9
Q ss_pred CCccCCcchhhhhcCCcchhhHHH
Q 026617 39 SPRFFANGFMEFLTRTKWWVIPLV 62 (236)
Q Consensus 39 ~~rlF~n~~lE~~t~t~~~~~p~v 62 (236)
+.++=+|..+|.. |-++|++
T Consensus 68 ~~~~~~n~~lEi~----WTviP~l 87 (107)
T d3ehbb2 68 PARFTHNTPIEVI----WTLVPVL 87 (107)
T ss_dssp CCCCCCCHHHHHH----HHHHHHH
T ss_pred ccccccchHHHHH----HHHHHHH
Confidence 3456678888875 6677766
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.73 E-value=3.7e+02 Score=17.19 Aligned_cols=20 Identities=35% Similarity=0.778 Sum_probs=14.5
Q ss_pred CCccCCcchhhhhcCCcchhhHHH
Q 026617 39 SPRFFANGFMEFLTRTKWWVIPLV 62 (236)
Q Consensus 39 ~~rlF~n~~lE~~t~t~~~~~p~v 62 (236)
+.+.-+|..+|.. |-++|++
T Consensus 62 ~~~~~~n~~LEii----WTviP~l 81 (100)
T d3dtub2 62 PARFTHNSPLEIA----WTIVPIV 81 (100)
T ss_dssp CCCCCCCHHHHHH----HHHHHHH
T ss_pred CccccCcchHHHH----HHHHHHH
Confidence 3467788889975 6677776
No 8
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.28 E-value=2.1e+02 Score=18.55 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=20.4
Q ss_pred cchhhhhcCCcchhhHHHHHHHHHHHHH
Q 026617 45 NGFMEFLTRTKWWVIPLVWLPVVCWSVS 72 (236)
Q Consensus 45 n~~lE~~t~t~~~~~p~vw~p~~~~~~~ 72 (236)
-++.|.+|...+|++=.+=+|......|
T Consensus 6 RpF~dIitsiRYWvIHsiTIPslFiaGw 33 (82)
T d2axte1 6 RPFSDIITSVRYWVIHSITIPALFIAGW 33 (82)
T ss_dssp SCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhhheeeEEEEEeecccHHHHhhh
Confidence 3677888999999998887775444433
No 9
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.67 E-value=1.6e+02 Score=18.67 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=13.4
Q ss_pred CCccccCCChhHHhhh
Q 026617 5 EPFSVDLNKPLVFQVG 20 (236)
Q Consensus 5 ~~~~~d~~kpl~~qv~ 20 (236)
...-+|.+||+..|+.
T Consensus 52 ~~~WLd~~K~i~kq~~ 67 (81)
T d1gg3a3 52 SKTWLDSAKEIKKQVR 67 (81)
T ss_dssp SCCBCCTTSCHHHHTT
T ss_pred ceEecccccchhhhcC
Confidence 4568999999999974
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.63 E-value=1.9e+02 Score=17.16 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=17.3
Q ss_pred cchhhhhcCCcchhhHHHHHHHHHHHHHhhh
Q 026617 45 NGFMEFLTRTKWWVIPLVWLPVVCWSVSKSV 75 (236)
Q Consensus 45 n~~lE~~t~t~~~~~p~vw~p~~~~~~~~~~ 75 (236)
|+.+..|| ++-++.+|........|+
T Consensus 3 N~~mk~lT-----~it~iflP~t~i~gifGM 28 (64)
T d2iuba2 3 NEVMKVLT-----IIATIFMPLTFIAGIYGM 28 (64)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHTTSCC-
T ss_pred hHHHHHHH-----HHHHHHHHHHHHHhhhcc
Confidence 44555565 666778888777777766
Done!