Query 026619
Match_columns 236
No_of_seqs 164 out of 727
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qtva5 g.41.10.1 (A:45-119) S 8.0 1E+02 0.0073 19.9 2.2 33 28-60 20-55 (75)
2 d1ubdc2 g.37.1.1 (C:323-350) Y 7.9 32 0.0023 18.5 -0.4 14 40-53 2-15 (28)
3 d1mkya3 d.52.5.1 (A:359-439) P 7.3 1.2E+02 0.0085 19.8 2.4 20 149-168 53-73 (81)
4 d1d4ua2 g.39.1.5 (A:1-36) DNA 7.3 1.2E+02 0.0086 17.2 2.0 29 41-72 6-34 (36)
5 d1tjla2 g.39.1.13 (A:111-151) 7.2 95 0.0069 17.7 1.6 16 178-193 23-38 (41)
6 d2pnga1 a.28.1.1 (A:1-76) Type 6.8 1.2E+02 0.0088 19.0 2.2 19 148-166 39-57 (76)
7 d2fc6a1 g.66.1.1 (A:8-44) Targ 6.7 81 0.0059 18.0 1.0 25 59-83 8-32 (37)
8 d2csba2 a.60.2.4 (A:294-350) T 6.6 86 0.0063 19.0 1.2 11 156-166 7-17 (57)
9 d2odgc1 a.140.1.1 (C:2-47) Inn 5.2 1.6E+02 0.012 17.5 1.8 15 156-170 13-27 (46)
10 d2p7vb1 a.4.13.2 (B:546-613) S 5.1 1.7E+02 0.013 18.3 2.1 17 150-166 7-23 (68)
No 1
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.01 E-value=1e+02 Score=19.93 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=21.2
Q ss_pred CCCCCccc-CcccccccccCCC--CCCCCCCCCCCC
Q 026619 28 ELNQPIEV-PQLNVHRCNECGQ--PLPEDFEPPADE 60 (236)
Q Consensus 28 ~~~qp~~v-P~~~~~~~~~~gq--~~P~s~~p~~~~ 60 (236)
-+|-=+.+ .+...++|+.|++ ++|.+|....+.
T Consensus 20 yiNP~~~~~~~~~~W~C~~C~~~N~lP~~Y~~~~~~ 55 (75)
T d2qtva5 20 ILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQE 55 (75)
T ss_dssp BCCTTCCEETTTTEEECTTTCCEEECCTTTSSCCTT
T ss_pred EECCceEEecCCCEEEecccCccCcCChhhccCCcc
Confidence 34443333 3456789999988 888888655433
No 2
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.94 E-value=32 Score=18.54 Aligned_cols=14 Identities=50% Similarity=1.104 Sum_probs=9.4
Q ss_pred ccccccCCCCCCCC
Q 026619 40 VHRCNECGQPLPED 53 (236)
Q Consensus 40 ~~~~~~~gq~~P~s 53 (236)
++.|.+||+..-+|
T Consensus 2 ~hvc~ecgkaf~es 15 (28)
T d1ubdc2 2 VHVCAECGKAFVES 15 (28)
T ss_dssp CEECTTTCCEESSH
T ss_pred cchHHHHhHHHHHH
Confidence 45688888865543
No 3
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.33 E-value=1.2e+02 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.1
Q ss_pred chhHHHHHHHHH-cCCCCCCC
Q 026619 149 YTGNLRQNLQKK-YHLKNSPC 168 (236)
Q Consensus 149 ~~~~~R~~IR~k-YgI~Gs~c 168 (236)
|.=.+...||++ ||+.|.+.
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 445678899998 99999874
No 4
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.29 E-value=1.2e+02 Score=17.19 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=21.3
Q ss_pred cccccCCCCCCCCCCCCCCCCCCcCCccccCC
Q 026619 41 HRCNECGQPLPEDFEPPADEPWTTGIFGCTED 72 (236)
Q Consensus 41 ~~~~~~gq~~P~s~~p~~~~~WstGLfdC~~D 72 (236)
..|-+||.+...||- .+.+....||=|.|
T Consensus 6 ~~C~eCg~~F~DSYL---~~~Fd~~vCD~CRD 34 (36)
T d1d4ua2 6 VICEECGKEFMDSYL---MDHFDLPTCDDCRD 34 (36)
T ss_dssp EECTTTCCEESCSSS---TTTTSCCCCTTTCS
T ss_pred HHHHHhCcHHHHHHH---HHcCCchhcccccC
Confidence 468899999999886 35677777774444
No 5
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=7.16 E-value=95 Score=17.74 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHhhh
Q 026619 178 HWCALCQEHREMKNRL 193 (236)
Q Consensus 178 ~~CaL~Qe~RElk~r~ 193 (236)
.-|.-||+.+|.+.|.
T Consensus 23 ~~Cv~Cq~~~E~~~r~ 38 (41)
T d1tjla2 23 DLCIDCKTLAEIREKQ 38 (41)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh
Confidence 3577788888876653
No 6
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.77 E-value=1.2e+02 Score=18.96 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHcCCCCC
Q 026619 148 IYTGNLRQNLQKKYHLKNS 166 (236)
Q Consensus 148 i~~~~~R~~IR~kYgI~Gs 166 (236)
+....++.+|+++||++=+
T Consensus 39 l~a~el~~~i~~~~g~~l~ 57 (76)
T d2pnga1 39 LMGVEVRQILEREHDLVLP 57 (76)
T ss_dssp HHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 4466899999999999754
No 7
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.73 E-value=81 Score=17.99 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCCCCcCCccccCCccccccccchh
Q 026619 59 DEPWTTGIFGCTEDTESCWTGFFCP 83 (236)
Q Consensus 59 ~~~WstGLfdC~~D~~~C~~~~~CP 83 (236)
.+.=++++||=|+..+-|-.+.-||
T Consensus 8 ~~~~~~~iC~~FsAyGWCP~G~qCp 32 (37)
T d2fc6a1 8 HRPHPTSICDNFSAYGWCPLGPQCP 32 (37)
T ss_dssp CCCCCSCBCSHHHHTCCCTTGGGCS
T ss_pred CCCCccchhhhhhhccccCCCCCCc
Confidence 4566789999888888888887776
No 8
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=6.59 E-value=86 Score=18.97 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=9.3
Q ss_pred HHHHHcCCCCC
Q 026619 156 NLQKKYHLKNS 166 (236)
Q Consensus 156 ~IR~kYgI~Gs 166 (236)
+++.||||+..
T Consensus 7 klqdrygired 17 (57)
T d2csba2 7 KLQDRYGIRED 17 (57)
T ss_dssp HHHHHHCCCHH
T ss_pred ehhhhhccHHH
Confidence 68899999864
No 9
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.22 E-value=1.6e+02 Score=17.49 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=10.7
Q ss_pred HHHHHcCCCCCCCcc
Q 026619 156 NLQKKYHLKNSPCEP 170 (236)
Q Consensus 156 ~IR~kYgI~Gs~c~D 170 (236)
++-++|||+-.+.-|
T Consensus 13 ~lL~~y~I~HGPvVd 27 (46)
T d2odgc1 13 TLLRRYNIPHGPVVG 27 (46)
T ss_dssp HHHHHTTCCCCCCCH
T ss_pred HHHHHhCCCCCCccc
Confidence 344589999887655
No 10
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=1.7e+02 Score=18.26 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHcCCCCC
Q 026619 150 TGNLRQNLQKKYHLKNS 166 (236)
Q Consensus 150 ~~~~R~~IR~kYgI~Gs 166 (236)
.-..|.-|+.+|||.+.
T Consensus 7 ~~rE~~Ii~~rfGl~~~ 23 (68)
T d2p7vb1 7 TAREAKVLRMRFGIDMN 23 (68)
T ss_dssp CHHHHHHHHHHTTTTSS
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 34788899999999864
Done!