BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026620
(236 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576548|ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 238
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/234 (71%), Positives = 201/234 (85%), Gaps = 6/234 (2%)
Query: 3 DGNGYDSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVAL 62
+GNG D+S +N E C S + D+G+ ++ RYYLSRRTVLEML+DRGY+V
Sbjct: 11 NGNGTDASER------FNMEGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPS 64
Query: 63 SEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIV 122
SEI+LS+Q+FRAI+G +PD+DRL+ S +H SDPSKR+LV+F GPGI+KV+ IR+I QIV
Sbjct: 65 SEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIV 124
Query: 123 NRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEK 182
N+D+LTGLIL+LQNQIT+QA KAV LF+FKVEMFQITDLLVNITKHVLKPKHQVLTD+EK
Sbjct: 125 NKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREK 184
Query: 183 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+KLLK Y IEEKQLPR+L+KDAIA+YYGLE+GQVVKVTYSGEITESHVTYRCVW
Sbjct: 185 QKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
>gi|351723899|ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 185/213 (86%)
Query: 24 TESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVD 83
+ CLS FVDNGS +S RYYLSRRT LEMLKDRGY++ EI+LS+ DFR I+GQ PD D
Sbjct: 25 AKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPD 84
Query: 84 RLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
RLR+S++H ++ SKRILV+FCGPG+VKV IR+ QI+NRDTLTGLILI++N ITSQA
Sbjct: 85 RLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQAL 144
Query: 144 KAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
KAV LF FKVE+FQITDLLVNITKHVLKPKHQVLTD++K LLKKY+IEEKQLPRML+ D
Sbjct: 145 KAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTD 204
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
AIA+YYGLERGQVVKVTYSGE+T+ HVTYRCVW
Sbjct: 205 AIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
>gi|224139746|ref|XP_002323257.1| predicted protein [Populus trichocarpa]
gi|222867887|gb|EEF05018.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 189/215 (87%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD 81
E CLS FVD GS +S RYYLSRRTVLEMLKDRGY+V SEI++S+QDFR +YGQ+PD
Sbjct: 2 ESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPD 61
Query: 82 VDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
++ L+ S +H+SDPSKR+LV+FCG G+VKV +IR I QI +RD+LTGLIL+LQN IT+Q
Sbjct: 62 IELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQ 121
Query: 142 ATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLK 201
A KA+ LF+FK+E+FQITDLLVNITKH+LKPKHQVL++Q K++LLKKYSIEEKQLPR+LK
Sbjct: 122 AMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLK 181
Query: 202 KDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
KDAI++YYGLERGQVVKVTY G+IT SHVTYRCVW
Sbjct: 182 KDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 216
>gi|297739911|emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 158/231 (68%), Positives = 193/231 (83%), Gaps = 5/231 (2%)
Query: 11 MEMEGGNGYNGE-----PTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEI 65
+ M+GG ++G+ + CLS FVD G +S RYYL+RRT+LEML+DRGY++ +I
Sbjct: 100 VSMDGGGWFDGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDI 159
Query: 66 NLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRD 125
++S+QDFR+ Y Q PD DRLRIS + +SDPSK+ILV+FCGP +VKVN IRSI +QIVN+D
Sbjct: 160 DISLQDFRSFYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKD 219
Query: 126 TLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+L+ LIL+LQN ITSQA KAV LF F+VE FQITDLLVNITKHVLKPKH+VLTDQEK KL
Sbjct: 220 SLSKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKL 279
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
LKKYS+ EKQLPRML++DAIA+YYGLE+GQVVKV Y+GEIT SHVTYRCVW
Sbjct: 280 LKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>gi|359482221|ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 158/229 (68%), Positives = 192/229 (83%), Gaps = 5/229 (2%)
Query: 13 MEGGNGYNGE-----PTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINL 67
M+GG ++G+ + CLS FVD G +S RYYL+RRT+LEML+DRGY++ +I++
Sbjct: 1 MDGGGWFDGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDI 60
Query: 68 SVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL 127
S+QDFR+ Y Q PD DRLRIS + +SDPSK+ILV+FCGP +VKVN IRSI +QIVN+D+L
Sbjct: 61 SLQDFRSFYSQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSL 120
Query: 128 TGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
+ LIL+LQN ITSQA KAV LF F+VE FQITDLLVNITKHVLKPKH+VLTDQEK KLLK
Sbjct: 121 SKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLK 180
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
KYS+ EKQLPRML++DAIA+YYGLE+GQVVKV Y+GEIT SHVTYRCVW
Sbjct: 181 KYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>gi|357509489|ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|124359979|gb|ABN07995.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 248
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/246 (67%), Positives = 196/246 (79%), Gaps = 12/246 (4%)
Query: 2 EDGNGYD-------SSMEMEGGNGYNGEPT----ESCLSGFVDNGSRDSLRYYLSRRTVL 50
E+G G + ++ME+E G+ +P CL DNGS +S RYYLSRRTVL
Sbjct: 4 ENGGGQNGTTETAITTMEIENGD-ITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVL 62
Query: 51 EMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVK 110
EMLKDRGY++ EI LS+ DFR I+GQ PDVDRLR++ +H ++PSKRILVVF GPGIVK
Sbjct: 63 EMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVK 122
Query: 111 VNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVL 170
VN +R I QIVNR++LTGLILI+QNQITSQA KAV L FKVE+FQITDLLVN TKHVL
Sbjct: 123 VNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVL 182
Query: 171 KPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHV 230
KPKHQVLTD++K+ LLKKY I+EKQLPRML+ DAIA+YYGL+RGQVVKVTY+GEIT+ HV
Sbjct: 183 KPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHV 242
Query: 231 TYRCVW 236
TYRCVW
Sbjct: 243 TYRCVW 248
>gi|388510192|gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 164/246 (66%), Positives = 195/246 (79%), Gaps = 12/246 (4%)
Query: 2 EDGNGYD-------SSMEMEGGNGYNGEPT----ESCLSGFVDNGSRDSLRYYLSRRTVL 50
E+G G + ++ME+E G+ +P CL DNGS +S RYYLSRRTVL
Sbjct: 4 ENGGGQNGTTETAITTMEIENGD-ITTQPQLQEQPQCLFTKKDNGSIESHRYYLSRRTVL 62
Query: 51 EMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVK 110
EMLKDRGY++ EI LS+ DFR I+GQ PDVDRLR++ +H ++PSKRILVVF GPGIVK
Sbjct: 63 EMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVK 122
Query: 111 VNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVL 170
VN +R I QIVNR++LTGLILI+QNQITSQA KAV L FKVE+ QITDLLVN TKHVL
Sbjct: 123 VNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEILQITDLLVNATKHVL 182
Query: 171 KPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHV 230
KPKHQVLTD++K+ LLKKY I+EKQLPRML+ DAIA+YYGL+RGQVVKVTY+GEIT+ HV
Sbjct: 183 KPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHV 242
Query: 231 TYRCVW 236
TYRCVW
Sbjct: 243 TYRCVW 248
>gi|449437743|ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 227
Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 151/224 (67%), Positives = 186/224 (83%), Gaps = 4/224 (1%)
Query: 17 NGYNGEPTE----SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF 72
+G+ EP +CLS ++D+G+ +S RY+LSRRTV+EMLKDRGY + I+ S+Q F
Sbjct: 4 DGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQF 63
Query: 73 RAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLIL 132
R +GQ PDVDRL++S +H SDPSKR+LVVFCG G VKVN IR+I QI N+D+L GLIL
Sbjct: 64 RETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLIL 123
Query: 133 ILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 192
I+QNQIT+QA KAV LF FKVE+FQITDLLVNITKH LKP HQVLT++EK+KLLK+YSIE
Sbjct: 124 IVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIE 183
Query: 193 EKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
EKQLPRML+ DAIA+YYGLE+GQVVKVTY G++T +H+TYRCVW
Sbjct: 184 EKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>gi|297817026|ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322234|gb|EFH52655.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 222
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/210 (67%), Positives = 176/210 (83%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
CLS +VD S +S RYYL+R+ L+ML+DRGY V+ +INLS+ DFRA+YG+ PDVDRLR
Sbjct: 13 CLSKYVDPSSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDRLR 72
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
IS H+SD SK++ VVF G G+VKVN IRSI + +++++T+TGLIL+LQ+Q+T QA KA+
Sbjct: 73 ISAQHRSDSSKKVKVVFFGTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAMKAI 132
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
LF FKVE+FQITDLLVNITKH LKP+H+VL D+EK LLKK+SIEEKQLPR+ KKDAI
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHALKPQHRVLNDKEKTTLLKKFSIEEKQLPRISKKDAIV 192
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+YYGLE+GQVVKV Y GE+TESHV YRCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAYRCVW 222
>gi|15230206|ref|NP_191267.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana]
gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana]
gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
Length = 222
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/218 (64%), Positives = 179/218 (82%), Gaps = 2/218 (0%)
Query: 21 GEPTES--CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
G+ T S CLS +VD S +S RYYL+RR L+ML+DRGY V+ +INLS+ DFR +YG+
Sbjct: 5 GKETASVLCLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGE 64
Query: 79 DPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI 138
PDVDRLRIS H+SD +K++ +VF G +VKVN IRS+++ I++++T+TGLIL+LQN +
Sbjct: 65 RPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHV 124
Query: 139 TSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 198
T+QA KA+ LF FKVE+FQITDLLVNITKH LKP+HQVL D+EK LLKK+SIEEKQLPR
Sbjct: 125 TNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPR 184
Query: 199 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+ KKDAI +YYGLE+GQVVKV Y GE+TESHV +RCVW
Sbjct: 185 ISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
>gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
Length = 222
Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 140/218 (64%), Positives = 179/218 (82%), Gaps = 2/218 (0%)
Query: 21 GEPTES--CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ 78
G+ T S CLS +VD S +S RYYL+RR L++L+DRGY V+ +INLS+ DFR +YG+
Sbjct: 5 GKETASVLCLSKYVDLSSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGE 64
Query: 79 DPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI 138
PDVDRLRIS H+SD +K++ +VF G +VKVN IRS+++ I++++T+TGLIL+LQN +
Sbjct: 65 RPDVDRLRISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHV 124
Query: 139 TSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 198
T+QA KA+ LF FKVE+FQITDLLVNITKH LKP+HQVL D+EK LLKK+SIEEKQLPR
Sbjct: 125 TNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPR 184
Query: 199 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+ KKDAI +YYGLE+GQVVKV Y GE+TESHV +RCVW
Sbjct: 185 ISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
>gi|297824079|ref|XP_002879922.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325761|gb|EFH56181.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 218
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/216 (62%), Positives = 174/216 (80%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
G+ E + +D S + +YYL+RRT +EML+DRGY V+ ++N S++ FRA+YG+
Sbjct: 3 GKGKEIAVVQSIDKPSVECHKYYLARRTTMEMLRDRGYDVSDEDVNFSLEQFRALYGERL 62
Query: 81 DVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITS 140
DVDRLRIS H+ D SK+I+VVFCG G+VKVN +R+I + ++NR+++TGLIL+LQ+ IT+
Sbjct: 63 DVDRLRISAKHRFDSSKKIMVVFCGTGMVKVNAMRAIAADVLNRESITGLILVLQSHITN 122
Query: 141 QATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
QA KAV LF FKVE+F+ITDLLVN+TKHVL+PKHQVL D+EKE LLKKYSIEEKQLPR+
Sbjct: 123 QALKAVELFSFKVELFEITDLLVNVTKHVLRPKHQVLNDKEKESLLKKYSIEEKQLPRLS 182
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
KD I +YYGLE GQV+KVTY E++ESHVTYRCV
Sbjct: 183 SKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCVM 218
>gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus]
Length = 223
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/212 (63%), Positives = 171/212 (80%), Gaps = 1/212 (0%)
Query: 26 SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
S LS +D DS YYL+RRT +EML+DRGY ++ +INL++Q+FRA+YG P+VDRL
Sbjct: 12 SGLSKSLDESRVDSHSYYLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRL 71
Query: 86 RISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
RIS H SD SK+I VVFCG GIVKV+ IR I + ++ R+ LTGLIL+LQ+ IT+QA KA
Sbjct: 72 RISAQHCSDSSKKIAVVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKA 131
Query: 146 VGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
V LF FKVE+FQ+T+LLVNITKHVL+PKH VL +QEKE L KK+SI+E+QLP++LKKD
Sbjct: 132 VELFSFKVELFQLTELLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKLLKKDPT 191
Query: 206 AQYYGLERGQVVKVTYSGEITES-HVTYRCVW 236
A+YYGLE+GQVV+VTY GE +ES HV+YRC W
Sbjct: 192 AKYYGLEKGQVVEVTYKGEGSESDHVSYRCAW 223
>gi|15227327|ref|NP_181665.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
gi|3894190|gb|AAC78539.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
gi|19310385|gb|AAL84932.1| At2g41340/F13H10.11 [Arabidopsis thaliana]
gi|330254867|gb|AEC09961.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
Length = 218
Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/215 (62%), Positives = 171/215 (79%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
G+ E + + S + +YYL+RRT +EML+DRGY V+ +INLS+Q FRA+YG+ P
Sbjct: 3 GKGKEIVVGHSISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHP 62
Query: 81 DVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITS 140
DVD LRIS H+ D SK+I VVFCG GIVKVN +R I + +++R+ +TGLIL+LQ+ IT+
Sbjct: 63 DVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITN 122
Query: 141 QATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
QA KAV LF FKVE+F+ITDLLVN++KHVL+PKHQVL D+EKE LLKK+SIEEKQLPR+
Sbjct: 123 QALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLS 182
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
KD I +YYGLE GQV+KVTY E++ESHVTYRCV
Sbjct: 183 SKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217
>gi|224053296|ref|XP_002297750.1| predicted protein [Populus trichocarpa]
gi|222845008|gb|EEE82555.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 174/230 (75%), Gaps = 3/230 (1%)
Query: 9 SSMEMEGGNG--YNGE-PTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEI 65
++ E GNG ++G + CL+ FVD GS +S RYY+SRRTVLEMLKDRGY V SE+
Sbjct: 3 ATTETFNGNGASFHGVLDRDRCLTDFVDEGSAESYRYYISRRTVLEMLKDRGYDVLDSEL 62
Query: 66 NLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRD 125
N S+ +FR+++G PD+D LR S+S +S P K+ LV+F G +K IR++ QI+N++
Sbjct: 63 NRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHKKTLVMFLGTDEIKTANIRTVYGQILNKE 122
Query: 126 TLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+L GLILILQ+++ A K + F FKVE+FQITDLLVNITKHVL+P+ +LT ++K+++
Sbjct: 123 SLHGLILILQSKMNHFAKKELEKFPFKVEVFQITDLLVNITKHVLQPQMDILTAEQKQQV 182
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+ KY +E+KQLPRML+ DAI QYYGL++GQ+VK+TYSGEI + VTYRCV
Sbjct: 183 MNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKITYSGEIVDHLVTYRCV 232
>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 161/225 (71%), Gaps = 5/225 (2%)
Query: 11 MEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQ 70
ME + G+ NG SC++ ++ GS +S RYYLSRRT+ +ML DRGY V SE+ S+
Sbjct: 511 MESQAGSHGNG----SCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLS 566
Query: 71 DFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGL 130
DFRA +G +PD RLRI + S PSK+ILVVFCG ++ VIR I QI NR+ L L
Sbjct: 567 DFRASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRL 625
Query: 131 ILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
IL+LQ+++ S A K V + KVE FQIT+LL+NITKHV PKH++L+ QEK KL+ KY
Sbjct: 626 ILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYK 685
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E+KQ P M K DAIA+YYGLE+GQVVK+TY G +T+S VTYRCV
Sbjct: 686 LEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 730
>gi|359487223|ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 161/225 (71%), Gaps = 5/225 (2%)
Query: 11 MEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQ 70
ME + G+ NG SC++ ++ GS +S RYYLSRRT+ +ML DRGY V SE+ S+
Sbjct: 1 MESQAGSHGNG----SCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLS 56
Query: 71 DFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGL 130
DFRA +G +PD RLRI + S PSK+ILVVFCG ++ VIR I QI NR+ L L
Sbjct: 57 DFRASFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRL 115
Query: 131 ILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
IL+LQ+++ S A K V + KVE FQIT+LL+NITKHV PKH++L+ QEK KL+ KY
Sbjct: 116 ILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYK 175
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E+KQ P M K DAIA+YYGLE+GQVVK+TY G +T+S VTYRCV
Sbjct: 176 LEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 220
>gi|255544029|ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 239
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 161/209 (77%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
CL+ FV+ S +S RYYLSR+TV+EML+DRGY VA SE+ S +F + +G +PD+ +LR
Sbjct: 30 CLTKFVEQASLESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLR 89
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
IS S S P K+++VVF G +K+ IR ++ QI N+++L GLILILQ+++ A K +
Sbjct: 90 ISASLHSHPDKKMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKEL 149
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
G F KVE+F I+DLLVNITKHVLKP+H+VLT ++K++LL K+S E+KQLPRML DAI+
Sbjct: 150 GQFPSKVEIFHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAIS 209
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+YYG E+GQVVK+TYSG + +S VTYRCV
Sbjct: 210 RYYGFEKGQVVKITYSGGLVDSLVTYRCV 238
>gi|108862173|gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 335
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 158/211 (74%), Gaps = 2/211 (0%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
C++ +D GS +S R +L+RRT +EML+DRGY+V +EI ++ +FRA + + P ++RL
Sbjct: 126 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 185
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + SDPSK++ +VFC P VK+ IR I Q + L+ L+LILQ++I S+A +A+
Sbjct: 186 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAI 244
Query: 147 G-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+F+FKV++FQ TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+
Sbjct: 245 KEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 304
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+YYG ++G VVKVTY GE+T V YRCV+
Sbjct: 305 ARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 335
>gi|115487264|ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|125535725|gb|EAY82213.1| hypothetical protein OsI_37416 [Oryza sativa Indica Group]
gi|125578454|gb|EAZ19600.1| hypothetical protein OsJ_35178 [Oryza sativa Japonica Group]
gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza glaberrima]
Length = 227
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 158/211 (74%), Gaps = 2/211 (0%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
C++ +D GS +S R +L+RRT +EML+DRGY+V +EI ++ +FRA + + P ++RL
Sbjct: 18 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + SDPSK++ +VFC P VK+ IR I Q + L+ L+LILQ++I S+A +A+
Sbjct: 78 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAI 136
Query: 147 G-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+F+FKV++FQ TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+
Sbjct: 137 KEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 196
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+YYG ++G VVKVTY GE+T V YRCV+
Sbjct: 197 ARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 227
>gi|357153158|ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
distachyon]
Length = 468
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 160/211 (75%), Gaps = 2/211 (0%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
C+S +D+G +S R +L+RRT LEML+DR YAV +++ ++ +FRA + + P++DRL
Sbjct: 259 CVSSMIDSGDPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEIDRLS 318
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
S + SDPS ++ +VFC P K+ IR + ++ + + L+ LIL+LQ++ITS+A A+
Sbjct: 319 FSTTLASDPSNKVQLVFCPPEPFKIAAIREVYGRVKD-ENLSCLILVLQSKITSRAKDAI 377
Query: 147 G-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+F++KV++FQI +LLVN+TKHVLKP+H+VLT +EK LLKKY++ + QLPRML+ DAI
Sbjct: 378 KEIFKYKVDVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQLPRMLETDAI 437
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+YYGL +G V++VTY GE+T +HVTYRC++
Sbjct: 438 ARYYGLGKGTVLRVTYDGELTGNHVTYRCIF 468
>gi|125533361|gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
Length = 227
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 163/228 (71%), Gaps = 3/228 (1%)
Query: 10 SMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSV 69
+ EME + E E C++ +D GS +S R +L+RRT +EML+DRGY+V +EI +
Sbjct: 2 AAEMEADDVDVHEVPE-CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTP 60
Query: 70 QDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTG 129
+FRA + + P ++RL + + SDPSK++ +VFC P VK+ IR I Q + L+
Sbjct: 61 PEFRAWWAEKPGIERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSR 119
Query: 130 LILILQNQITSQATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
L+LILQ++I S+A +A+ +F+FKV++FQ TDLLVNITKHVLKPKH+VL+ +K KLLK+
Sbjct: 120 LVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKE 179
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
Y++E+ QLPRML+ DA+A+YYG ++G VVKV Y GE+T V YRCV+
Sbjct: 180 YNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227
>gi|115484123|ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113644427|dbj|BAF27568.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|125576186|gb|EAZ17408.1| hypothetical protein OsJ_32930 [Oryza sativa Japonica Group]
Length = 227
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 157/211 (74%), Gaps = 2/211 (0%)
Query: 27 CLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR 86
C++ +D GS +S R +L+RRT +EML+DRGY+V +EI ++ +FRA + + P ++RL
Sbjct: 18 CIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + SDPSK++ +VFC P VK+ IR I Q + L+ L+LILQ++I S+A +A+
Sbjct: 78 FTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAI 136
Query: 147 G-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+F+FKV++FQ TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+
Sbjct: 137 KEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 196
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+YYG ++G VVKV Y GE+T V YRCV+
Sbjct: 197 ARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227
>gi|326520990|dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 159/221 (71%), Gaps = 5/221 (2%)
Query: 20 NGEPTESCLSGFVDNGSR---DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
N C+S VD G +S R +L+RRT LEML+DRGY+V E+ ++ +FRA +
Sbjct: 32 NAPEVAGCISSMVDLGGAAGVESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWW 91
Query: 77 GQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN 136
+ P+++RL S + SDPS ++ +VFC P VK+ IR + +I + L+ LILILQ+
Sbjct: 92 SETPEIERLSFSTTLASDPSSKVRIVFCPPEPVKIAAIREVHLRI-KEENLSCLILILQS 150
Query: 137 QITSQATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+IT++A +++ +F+FKV++FQIT+LLVNITKHVLKP H+VLT +EK KLLK+Y++ + Q
Sbjct: 151 KITARARESIKEIFKFKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQ 210
Query: 196 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
LPRML+ DA+A+YYGL +G VVK TY E+T HVTYRC++
Sbjct: 211 LPRMLETDAVARYYGLGKGTVVKFTYDNELTVDHVTYRCIF 251
>gi|346703375|emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
Length = 206
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/206 (52%), Positives = 155/206 (75%), Gaps = 2/206 (0%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D GS +S R +L+RRT +EML+DRGY+V +EI ++ +FRA + + P ++RL + +
Sbjct: 2 IDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTL 61
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG-LFQ 150
SDPSK++ +VFC P VK+ IR I Q + L+ L+LILQ++I S+A +A+ +F+
Sbjct: 62 VSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFK 120
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
FKV++FQ TDLLVNITKHVLKPKH+VL+ +K KLLK+Y++E+ QLPRML+ DA+A+YYG
Sbjct: 121 FKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYG 180
Query: 211 LERGQVVKVTYSGEITESHVTYRCVW 236
++G VVKVTY GE+T V YRCV+
Sbjct: 181 FDKGTVVKVTYDGELTGKRVAYRCVF 206
>gi|242069947|ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
gi|241936093|gb|EES09238.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
Length = 263
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 156/213 (73%), Gaps = 3/213 (1%)
Query: 26 SCLSGFVD-NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+C+S +D GS +S R +L+RRT LEML+DRGYAV E+ ++ +FRA + P+++R
Sbjct: 52 ACISAMLDLGGSVESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELER 111
Query: 85 LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
L S + SDPS ++ VVFC P VK+ IR + + V + L+ LILILQ +I S+A +
Sbjct: 112 LAFSTTLASDPSSKVKVVFCPPEPVKIAAIRVVYTG-VKDENLSRLILILQGRIMSKARE 170
Query: 145 AVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
A+ +F +KV+ FQIT+LLVNITKH LKPKHQVLT +EK KLLK+Y++ + QLPRML+ D
Sbjct: 171 AIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRMLEND 230
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+A+YYGL +G VVKV Y E+T +HVTYRC++
Sbjct: 231 AVARYYGLGKGTVVKVIYDSELTGNHVTYRCIF 263
>gi|346703190|emb|CBX25289.1| hypothetical_protein [Oryza brachyantha]
Length = 288
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 165/229 (72%), Gaps = 5/229 (2%)
Query: 10 SMEMEGGNGYNGEPTESCLSGFVD-NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLS 68
+ EME + P C++ VD +GS +S R +L+RRT LEML+DRGY+V EI +
Sbjct: 63 AAEMEIDDDLPEVP--DCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPEEEIART 120
Query: 69 VQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLT 128
+ +FRA +G+ +++RL + + SDPSK++ +VFC P VK+ IR I Q + L+
Sbjct: 121 LPEFRAWWGEKSEIERLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQ-TEGENLS 179
Query: 129 GLILILQNQITSQATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
LILILQ++I S+A +++ +F+ KV++FQ+T+LLVNITKHVLKPKH+VL+ +K KLLK
Sbjct: 180 RLILILQSRILSRARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLK 239
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+Y++E+ QLPRML+ D +A+YYGL++G VVKV Y E+T +HV YRCV+
Sbjct: 240 QYNVEDSQLPRMLETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCVF 288
>gi|195635599|gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 264
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 156/212 (73%), Gaps = 3/212 (1%)
Query: 26 SCLSGFVDNG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+C+S +D G S +S R +L+RRT LEML+DRGYAV E+ ++ +FRA + P+++R
Sbjct: 53 ACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELER 112
Query: 85 LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
L S + SDPS ++ VVFC PG VK+ IR I ++ V + L+ LILILQ +I S +
Sbjct: 113 LAFSTTLASDPSSKVKVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRE 171
Query: 145 AVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
++ +F+FKV+ FQIT+LLVNITKHVLKPKH+VLT + K KLLK+Y++ + QLPRML+ D
Sbjct: 172 SIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLEND 231
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
A+A+YYGL +G VVKV Y E+T +HVTYRC+
Sbjct: 232 AVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263
>gi|414588639|tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 263
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 156/212 (73%), Gaps = 3/212 (1%)
Query: 26 SCLSGFVDNG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+C+S +D G S +S R +L+RRT LEML+DRGYAV E+ ++ +FRA + P+++R
Sbjct: 52 ACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELER 111
Query: 85 LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
L S + SDPS ++ VVFC PG VK+ IR I ++ V + L+ LILILQ +I S +
Sbjct: 112 LAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRE 170
Query: 145 AVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
++ +F+FKV+ FQIT+LLVNITKHVLKPKH+VLT + K KLLK+Y++ + QLPRML+ D
Sbjct: 171 SIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLEND 230
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
A+A+YYGL +G VVKV Y E+T +HVTYRC+
Sbjct: 231 AVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 262
>gi|226491902|ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
gi|194706176|gb|ACF87172.1| unknown [Zea mays]
Length = 248
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 156/212 (73%), Gaps = 3/212 (1%)
Query: 26 SCLSGFVDNG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+C+S +D G S +S R +L+RRT LEML+DRGYAV E+ ++ +FRA + P+++R
Sbjct: 37 ACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELER 96
Query: 85 LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
L S + SDPS ++ VVFC PG VK+ IR I ++ V + L+ LILILQ +I S +
Sbjct: 97 LAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRE 155
Query: 145 AVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
++ +F+FKV+ FQIT+LLVNITKHVLKPKH+VLT + K KLLK+Y++ + QLPRML+ D
Sbjct: 156 SIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLEND 215
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
A+A+YYGL +G VVKV Y E+T +HVTYRC+
Sbjct: 216 AVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247
>gi|356541565|ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 214
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 152/204 (74%), Gaps = 1/204 (0%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGY-AVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
DNGS +SLRY+LSRRT+LEML+DRGY V + ++ S+ +FR+ +GQ+P+ L +SH
Sbjct: 10 DNGSMESLRYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPNPQTLAFCVSH 69
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQF 151
S+PS + VVF G ++ + I +QI ++ L GLIL++Q+++TS A K + F
Sbjct: 70 LSNPSNTVQVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTSFAKKDLESLPF 129
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
KVE+ +I DLLVNITKHVL+PK+++LTD EK+ LL K++++EKQLP MLK DAIA YYGL
Sbjct: 130 KVEIIRIDDLLVNITKHVLQPKYEILTDDEKKALLTKHNLDEKQLPHMLKTDAIASYYGL 189
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
E+GQVVK+T+ G + + HV+YRCV
Sbjct: 190 EKGQVVKITHRGPVVDFHVSYRCV 213
>gi|346703279|emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
Length = 226
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 163/229 (71%), Gaps = 7/229 (3%)
Query: 10 SMEMEGGNGYNGEPTESCLSGFVD-NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLS 68
+ EME + P C++ VD +GS +S R +L+RRT LEML+DRGY+V EI +
Sbjct: 3 AAEMEIDDDLPEVP--DCIASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIART 60
Query: 69 VQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLT 128
+ +FRA +G+ +++RL + + SDPSK++ +VFC P VK+ IR I Q + L+
Sbjct: 61 LPEFRAWWGEKSEIERLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQ-TEGENLS 119
Query: 129 GLILILQNQITSQATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
LILILQ++I S+A +++ +F+ KV++FQ +LLVNITKHVLKPKH+VL+ +K KLLK
Sbjct: 120 RLILILQSRILSRARESIKEIFKLKVDIFQ--ELLVNITKHVLKPKHEVLSAAQKAKLLK 177
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+Y++E+ QLPRML+ D +A+YYGL++G VVKV Y E+T +HV YRCV+
Sbjct: 178 QYNVEDSQLPRMLETDPVARYYGLDKGTVVKVIYDSELTGNHVAYRCVF 226
>gi|357155279|ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 270
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 150/213 (70%), Gaps = 5/213 (2%)
Query: 28 LSGFVDNGSRDSLR---YYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
++ VD G R S +L+RRT LEML+DRGY+V E+ ++ +FRA + + P++ R
Sbjct: 59 MASMVDRGGRASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKPEMRR 118
Query: 85 LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
L S + SD S ++ VFC P V + IR + SQI + L+ LILILQ ITS+A
Sbjct: 119 LSFSATFASDHSNKVQFVFCPPKPVNITTIREVYSQI-EEENLSRLILILQGDITSKARD 177
Query: 145 AVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
+ +F FKV++FQ+T+LLVNI+KH LKPKH+VLT +EK +LLKKY++E+ +LP ML+ D
Sbjct: 178 CIKEIFPFKVDIFQVTELLVNISKHELKPKHEVLTAEEKAELLKKYNLEDSRLPCMLEND 237
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+A+YYGL +G +VK+TY GE+T HVTYRC++
Sbjct: 238 AVARYYGLGKGTIVKITYDGELTGHHVTYRCIF 270
>gi|15232524|ref|NP_191013.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
gi|7258352|emb|CAB77569.1| RNA polymerase 24kDa subunit-like protein [Arabidopsis thaliana]
gi|332645717|gb|AEE79238.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
Length = 233
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 150/210 (71%)
Query: 26 SCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
+C+S D G +S R+YL+R T EML+DRGY V +E++L++ +FR+++G+ P+++RL
Sbjct: 23 NCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERL 82
Query: 86 RISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
RI + +SDP K+ILVVF G + V +R++ QI N L +IL+LQ+++ A KA
Sbjct: 83 RICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKA 142
Query: 146 VGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+ F F VE F I DLLVNITKH+ +PK ++L +EKE+LL+K+++E+KQLP + +KD+
Sbjct: 143 LTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSF 202
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+YYGL++ QVVK+TYS E VTYRC+
Sbjct: 203 VRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
>gi|87162511|gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
Length = 224
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 158/218 (72%), Gaps = 2/218 (0%)
Query: 20 NGEPTES-CLSGFVDNGSR-DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
NG T S CL + S +++RY+ R+T+++ML DRGY V+ S++ LS+ +FR+ +G
Sbjct: 6 NGNETRSECLVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFG 65
Query: 78 QDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQ 137
+ P L +S+S +S+PS ++ VVF G ++ + + I SQIV+++ L+ LIL++Q++
Sbjct: 66 EFPKPHTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSK 125
Query: 138 ITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 197
+TS A K + FKVE+ Q+ DLLVN+TKHVL+PK++VLT EK+KLL KY +EEKQLP
Sbjct: 126 MTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLP 185
Query: 198 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
ML+ DAIA YYGLE+GQVVK+++SGE+ S V YRCV
Sbjct: 186 HMLRTDAIASYYGLEKGQVVKISHSGEMFNSLVMYRCV 223
>gi|297816744|ref|XP_002876255.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322093|gb|EFH52514.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 223
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 149/226 (65%), Gaps = 10/226 (4%)
Query: 14 EGGNGYNGEPT----ESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSV 69
E G NGE T C+S D G DS R+YL+R T EML+DRGY V +E++L++
Sbjct: 3 EEGCCENGESTFKNGSHCISKTEDTGGIDSKRFYLARTTAFEMLRDRGYEVNEAELSLTL 62
Query: 70 QDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTG 129
+FR+++G+ PD++RLRI + +SDP K+ILVVF G + V +R+I SQI N +
Sbjct: 63 SEFRSVFGEKPDLERLRICVPLRSDPKKKILVVFMGTEPITVKSVRAIHSQISNNVGVNA 122
Query: 130 LILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189
+ILILQ+++ A K + F F VE I DLLVNI KH+ +PK ++L +EKE+LL+K+
Sbjct: 123 MILILQSKMNHFAHKELTTFPFTVETIPIGDLLVNIAKHIQQPKIEILNKEEKEQLLRKH 182
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++E+KQ +D+ +YYGL++ QVVK+TYS E VTYRC+
Sbjct: 183 ALEDKQ------EDSFVRYYGLKKKQVVKITYSKEPIGDFVTYRCI 222
>gi|359481904|ref|XP_003632689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1-like [Vitis vinifera]
Length = 207
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 133/209 (63%), Gaps = 42/209 (20%)
Query: 28 LSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRI 87
LS FVD GS +S RYYL+RRT+LEML+DRGY++ +I+ IY Q V L +
Sbjct: 41 LSSFVDEGSIESHRYYLARRTLLEMLRDRGYSIPALDID--------IYLQFXSVFHLFV 92
Query: 88 SISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG 147
S S S ILV+FCGP +VKVN IRSI +QIVN+D+L+ LIL+LQN ITSQA KAV
Sbjct: 93 SSSDYSLFXLHILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVD 152
Query: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
LF F+VEMFQ++ LPRML++DAIA+
Sbjct: 153 LFSFQVEMFQVS----------------------------------LDLPRMLQQDAIAR 178
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCVW 236
YYGLE+GQVVKV Y+GEIT SHVTYRCVW
Sbjct: 179 YYGLEKGQVVKVIYNGEITGSHVTYRCVW 207
>gi|388498148|gb|AFK37140.1| unknown [Lotus japonicus]
Length = 150
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 100/111 (90%)
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITD 160
V+FCGPG+VKV IR+I QIVN+DTL+G++LI++N IT QA KA+ LF FKVE+FQITD
Sbjct: 40 VIFCGPGVVKVTSIRNIAGQIVNKDTLSGVLLIVENNITGQALKAINLFSFKVEIFQITD 99
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
LLVNITKHVLKPKHQVLTD++K+ LLKK++IEEKQLPRML+ DAIA+YYGL
Sbjct: 100 LLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQSDAIARYYGL 150
>gi|356506928|ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 183
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 130/185 (70%), Gaps = 4/185 (2%)
Query: 52 MLKDRGY-AVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVK 110
ML+DRGY A+ + I+ S+ +F + + Q+P+ L + H S+ + VVF GP ++
Sbjct: 1 MLQDRGYDAIQHANISPSLTEFCSRFSQNPNPQTLDFCVPHLSN---TVQVVFVGPKEIR 57
Query: 111 VNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVL 170
+ I SQI ++ +L LIL++++++TS A K + F FKVE +I DLLVNITKHVL
Sbjct: 58 KGTVNEICSQIADKGSLKWLILVVKSKMTSFAKKDLENFPFKVETIKIDDLLVNITKHVL 117
Query: 171 KPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHV 230
+PK+++LTD EK+ LL K++++EKQLP MLK D IA+YYGLE+GQVVK+T+SG + V
Sbjct: 118 QPKYEILTDDEKQALLTKHNLDEKQLPHMLKTDTIARYYGLEKGQVVKITHSGPVVNFDV 177
Query: 231 TYRCV 235
+YRCV
Sbjct: 178 SYRCV 182
>gi|147776024|emb|CAN60800.1| hypothetical protein VITISV_022856 [Vitis vinifera]
Length = 162
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
Query: 88 SISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG 147
S SH+ ILVVFCG ++ VIR I QI NR+ L LIL+LQ+++ S A K V
Sbjct: 15 SWSHEITKLHMILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVD 73
Query: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
+ KVE FQIT+LL+NITKHV PKH++L+ QEK KL+ KY +E+KQ P M K DAIA+
Sbjct: 74 EYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQKDDAIAR 133
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235
YYGLE+GQVVK+TY G +T+S VTYRCV
Sbjct: 134 YYGLEKGQVVKITYKGGMTDSLVTYRCV 161
>gi|357497659|ref|XP_003619118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355494133|gb|AES75336.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 205
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 125/196 (63%), Gaps = 2/196 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
+ Y RRTV +ML+DR Y V SE+N+S Q+ +A +G++ + L I +++ DPS +I
Sbjct: 10 KLYRIRRTVFQMLRDRNYRVLDSEVNMSKQELKAKFGENMNRKDLTIQTTNKDDPSDKIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFKVEMFQIT 159
V F + V+ I++I I+ +I++ QN++ S+A + LF + ++E F
Sbjct: 70 VFFRDDAKLGVSTIKTIKDLILTEGVYRAIIVV-QNELKSKARSELNLFSEVRIEAFLED 128
Query: 160 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
+LLVN+ +HVL P+HQVLT+ EK+ LL Y+++E QLPRML D +A+YYGL+RGQV ++
Sbjct: 129 ELLVNVIEHVLVPEHQVLTNAEKKDLLSTYTVKETQLPRMLVTDPVAKYYGLKRGQVCRI 188
Query: 220 TYSGEITESHVTYRCV 235
E +VTYR V
Sbjct: 189 IRHSETAGIYVTYRIV 204
>gi|168011548|ref|XP_001758465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690500|gb|EDQ76867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR 98
S R Y R+TV+EML+DR Y VA E+ LS + FR YG +P + L I +S+ ++
Sbjct: 10 SARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNNAEH 69
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMF 156
I V F V V I++ + ++ + + IL++Q +T A + V ++ +E+F
Sbjct: 70 IFVFFPEEAKVGVKTIKTYVDRM-KTENVHRAILVVQQNLTPFARQCVSEMASKYHLEVF 128
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
Q +LLVNI +HVL P H+VLT EK+ LL++Y+++E QLPRM + D +A+YYGL+RGQV
Sbjct: 129 QEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQLPRMQENDPVARYYGLKRGQV 188
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 189 VKIIRPSETAGRYVTYRFV 207
>gi|357480733|ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355511987|gb|AES93610.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 410
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 128/216 (59%), Gaps = 11/216 (5%)
Query: 30 GFVDNGSRDSL--------RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD 81
F D ++ ++ R Y R+TV++MLKDR Y V E+N+S DF+ YG++
Sbjct: 195 AFCDTTTKKTMVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK 254
Query: 82 VDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
+ L I+ + + PS +I V F V V +++ +++ N + + IL+ Q +T
Sbjct: 255 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRM-NSENVYRAILVCQTSLTPF 313
Query: 142 ATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 199
A V +F +E+FQ +LLVNI +HVL P+HQ+L D EK+ LL++Y+++E QLPR+
Sbjct: 314 AKTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRI 373
Query: 200 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
D +A+YYGL+RGQVVK+ E +VTYR V
Sbjct: 374 QVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 409
>gi|168003716|ref|XP_001754558.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694179|gb|EDQ80528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y R+TV+EML+DR Y VA E+N + ++FR YG +P + L I +S+ ++ I
Sbjct: 12 RLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNNAEHIF 71
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V I++ + ++ + + IL++Q +T A + V ++ VE+FQ
Sbjct: 72 VFFPEEAKVGVKTIKTYVDRM-KTENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQE 130
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI HVL P+H+VL +EK LL++Y+++E QLPRM + D +A+YYGL+RGQVVK
Sbjct: 131 AELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQLPRMQENDPVARYYGLKRGQVVK 190
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 191 IIRPSETAGRYVTYRFV 207
>gi|302795809|ref|XP_002979667.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
gi|302807361|ref|XP_002985375.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300146838|gb|EFJ13505.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300152427|gb|EFJ19069.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
Length = 206
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y RRT+++ML+DR Y VA E++L+ + FR +G +P D L IS + +SD S +I
Sbjct: 10 RLYRIRRTIMQMLRDRDYLVADYEVSLTKEQFRDKFGDEPKRDDLVISKAKRSDQSDQIF 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V I++ ++ + + I+++Q +T A + + ++++E+FQ
Sbjct: 70 VFFPEEPKVGVKTIKTYAERM-KSELVFRAIMVVQTSLTPFAKQCLSEMAPKYQIEVFQE 128
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI +H L P+HQVL+ +EK+ LL++Y+++E QLPRM +D +A+YYGL+ GQVVK
Sbjct: 129 AELLVNIKEHTLVPEHQVLSAEEKKTLLERYTVKESQLPRMQDRDPVARYYGLKHGQVVK 188
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRYV 205
>gi|360043810|emb|CCD81356.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 205
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 118/192 (61%), Gaps = 2/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+T+L+M KDRGY V E+ S++DF+A G P L + ++H+ DP+ + V F
Sbjct: 13 RKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPADMLYVFFPE 72
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V + +R+ ++Q+ T ++++ + +T A A+ ++ +E F +L+V
Sbjct: 73 EEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMV 132
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++T
Sbjct: 133 NITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPS 192
Query: 224 EITESHVTYRCV 235
E ++TYR V
Sbjct: 193 ETAGRYITYRIV 204
>gi|195606570|gb|ACG25115.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 154
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 103/149 (69%), Gaps = 2/149 (1%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
GS +S R +L+RRT LEML DRGYAV E+ ++ +FRA P+++RL + SD
Sbjct: 6 GSVESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSD 65
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG-LFQFKV 153
PS ++ VVFC PG VK+ IR I ++ V + L LILILQ +I S +++ +F+FKV
Sbjct: 66 PSSKVKVVFCPPGPVKIAAIRLIYTE-VKDENLARLILILQGKIMSPTRESIKEIFRFKV 124
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEK 182
+ FQIT+LLVNITKHVLKPKH+VLT + K
Sbjct: 125 DTFQITELLVNITKHVLKPKHEVLTAEGK 153
>gi|388506474|gb|AFK41303.1| unknown [Medicago truncatula]
Length = 206
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y R+TV++MLKDR Y V E+N+S DF+ YG++ + L I+ + + PS +I
Sbjct: 10 RLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V +++ +++ N + + IL+ Q +T A V +F +E+FQ
Sbjct: 70 VFFPEEAKVGVKTMKTYTNRM-NSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEVFQE 128
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI +HVL P+HQ+L D EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK
Sbjct: 129 AELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVK 188
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRLV 205
>gi|357482711|ref|XP_003611642.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512977|gb|AES94600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 331
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 3/195 (1%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
Y R+TV+EML+DR Y V E+N+S ++F+ YG+ + + L I+ + + +PS +I V
Sbjct: 137 YRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKDNPSDQIYVF 196
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITD 160
F V V+ R+ ++ N + + I++ Q +T+ A ++ F +F +E+FQ +
Sbjct: 197 FPEDEKVGVHTFRTYTKRM-NSENVYRAIIVCQTSLTNMAWNSISQFDSKFHLEVFQEAE 255
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
LLVN+ H L P+HQ+LTD EK+ +L++Y+++E QLPR+ +D +A+YYG++RGQVVK+
Sbjct: 256 LLVNVRYHKLVPEHQLLTDNEKKTVLERYTVKETQLPRIQVRDPVARYYGMKRGQVVKII 315
Query: 221 YSGEITESHVTYRCV 235
E +VTYR V
Sbjct: 316 RPSETAGRYVTYRFV 330
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
Y R+ V+EML+DR Y V E+ +S Q+F+ YG++ + L I + + +PS +I V
Sbjct: 12 YRIRKKVMEMLRDRNYLVGDFEVCMSKQEFKETYGENLKREDLVIKKAKKDNPSDQIYVF 71
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFKVEMFQI 158
F V V+ +R+ +++ + D + I++ Q +T A + +F +E+F +
Sbjct: 72 FPENDKVDVHTLRTYTNRM-SSDNVYRAIVVCQTSLTKAARDFSEIASKFHLEVFHV 127
>gi|256071874|ref|XP_002572263.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
Length = 208
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 118/192 (61%), Gaps = 2/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+T+L+M KDRGY V E+ S++DF+A G P L + ++H+ DP+ + V F
Sbjct: 16 RKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPADMLYVFFPE 75
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V + +R+ ++Q+ T ++++ + +T A A+ ++ +E F +L+V
Sbjct: 76 EEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMV 135
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++T
Sbjct: 136 NITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPS 195
Query: 224 EITESHVTYRCV 235
E ++TYR V
Sbjct: 196 ETAGRYITYRIV 207
>gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum]
gi|226469816|emb|CAX70189.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226469818|emb|CAX70190.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226487596|emb|CAX74668.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
Length = 206
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 118/192 (61%), Gaps = 2/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+T+L+M KDRGY V E+ S++DF+A G P L + ++H+ DP+ + V F
Sbjct: 14 RKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHEEDPADMLYVFFPE 73
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V + +R+ ++Q+ T ++++ + +T A A+ ++ +E F +L+V
Sbjct: 74 EEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMV 133
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++T
Sbjct: 134 NITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPS 193
Query: 224 EITESHVTYRCV 235
E ++TYR V
Sbjct: 194 ETAGRYITYRIV 205
>gi|357500691|ref|XP_003620634.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495649|gb|AES76852.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 208
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 127/200 (63%), Gaps = 5/200 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D + + ++T+L+ML DR Y V +E+ +S +DF YG+ ++L I+ +H+++PS+
Sbjct: 7 DITKLFRIQKTLLQMLSDRNYLVEETELTMSREDFIFKYGEHMKREQLEINKTHRNNPSE 66
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV----GLFQFKV 153
+I V F + V ++R I++++ + +G IL+ Q +++ A AV + ++
Sbjct: 67 KICVFFSDDAKLGVKIVRGFITRMLQENVDSG-ILVCQTKLSHYARSAVTEMSSVGSKRL 125
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E+F +LLVNITKH P HQVLT+ EK LLKKY++++ QLPR+L D +A+YYGL R
Sbjct: 126 EVFLEDELLVNITKHERVPPHQVLTEAEKRALLKKYTVKDTQLPRILTSDPVARYYGLRR 185
Query: 214 GQVVKVTYSGEITESHVTYR 233
GQVV++ E +++TYR
Sbjct: 186 GQVVRIIRPSETAGTYITYR 205
>gi|393242192|gb|EJD49711.1| DNA-directed RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 209
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 123/201 (61%), Gaps = 5/201 (2%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SHQSDPSK 97
+R + RT+ EM++DRGY V+ E N+S++ FRA + + V+R ++ H DP+
Sbjct: 10 VRLWKVSRTIHEMVRDRGYQVSEEETNMSLEQFRAQHTTNGTVNRTTLTFFTHHAKDPND 69
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQ-FKVEM 155
++ V FC V + +R + + + G+I + +T A K + G+ Q +K+E
Sbjct: 70 QLFVFFCEDKNVSIKTMRKFLDVLQQKGIQRGII-VFSGTMTPSARKVITGMSQDYKLEE 128
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F DL+VNIT+H+L PKH+V+T + K+ LL++Y ++E QLPR+ D +A+YYGL+RGQ
Sbjct: 129 FAEADLIVNITQHILVPKHEVMTTEAKKALLERYRLKETQLPRIQLADPVARYYGLKRGQ 188
Query: 216 VVKVTYSGEITESHVTYRCVW 236
VVK+T E + + +YR +
Sbjct: 189 VVKITRPSETSGRYASYRICF 209
>gi|405118149|gb|AFR92924.1| DNA-directed RNA polymerase II 24 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 255
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISIS--HQ 92
+R+ R + RTV EM++DRGY +A EIN+S ++F+ +G VDR +S H+
Sbjct: 51 ANRELARLWRVSRTVHEMVRDRGYMLADYEINVSFEEFKDRHGATGSVDRSNMSFDAIHE 110
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-- 150
SD + +I V FC V +++ I + G+I I +++ A K + Q
Sbjct: 111 SDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGII-IWSEKMSPAAKKTLQEMQSE 169
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +DLLVNITKH L PKH V+ +EK L+K+Y ++E QLPR++ D +A+YYG
Sbjct: 170 YHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPVAKYYG 229
Query: 211 LERGQVVKVTYSGEITESHVTYR 233
L+RGQV+K+ + E ++TYR
Sbjct: 230 LKRGQVMKIERASETAGRYITYR 252
>gi|192910670|gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
guineensis]
Length = 204
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 126/200 (63%), Gaps = 3/200 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D R + RRTV++ML+DRGY V EIN++ F +G+ + L I+ + ++DP+
Sbjct: 5 DISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKNDPAD 64
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEM 155
+I V F V V I+ + ++ + G IL++Q +T A +++ ++ +E+
Sbjct: 65 QIYVFFPNDAKVGVKQIKQYVERMKAENVTRG-ILVVQQALTPFARQSLAEVSQKYMLEV 123
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
FQ T+LLVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQ
Sbjct: 124 FQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQVTDPIARYYGLKRGQ 183
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+ E +VTYR V
Sbjct: 184 VVKIIRPSETAGRYVTYRYV 203
>gi|350018416|dbj|GAA37368.1| DNA-directed RNA polymerases I II and III subunit RPABC1
[Clonorchis sinensis]
Length = 206
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 117/192 (60%), Gaps = 2/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+T+L+M KDRGY V E+ ++ DF+ G P L + ++H+ DP+ + V F
Sbjct: 14 RKTILKMCKDRGYLVMPKELEQTLDDFKLSVGDPPSRKDLLMVVNHEEDPADMLYVFFPD 73
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V + IR+ ++Q+ T ++++ + +T A A+ ++ +E F T+L+V
Sbjct: 74 EEKVNMKTIRAYLNQMQQDSTYRAILVLQEKGLTPFAKTALAELSCKYTLECFFETELMV 133
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NIT+H L P+H VLT +EK++LL++Y ++E QLP+M D +A+YYGL RGQVV++T
Sbjct: 134 NITEHQLVPQHNVLTQEEKKELLERYRLKESQLPKMQASDPVARYYGLRRGQVVRITRPS 193
Query: 224 EITESHVTYRCV 235
E ++TYR V
Sbjct: 194 ETAGRYITYRIV 205
>gi|325181796|emb|CCA16252.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 210
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 127/206 (61%), Gaps = 4/206 (1%)
Query: 34 NG-SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
NG S ++LR + R+T ++ML +RGY V+ +E+ ++ + F+ +G +P + + I +
Sbjct: 6 NGLSAEALRLFRVRKTTVKMLHNRGYIVSENELIMTPEGFQQQFGDNPTREMMTILVEKI 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DPS + V F V V IR+ +++ + + +T IL++Q IT A +A+ +
Sbjct: 66 DDPSDNLFVFFPEDTKVGVKPIRNYCNRMKD-ENVTKAILVVQEGITPFARQALNEMAPR 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+K+E F+ T+LLV+IT+H L P H+VL +EK LLK+Y I++ QLPRM D IA+YYG
Sbjct: 125 YKIEHFKETELLVDITEHTLVPVHRVLCREEKAALLKRYRIKDSQLPRMQTTDPIARYYG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCVW 236
+ RGQVVK+ E +VTYR V
Sbjct: 185 MVRGQVVKIIRPSETAGRYVTYRAVM 210
>gi|403418276|emb|CCM04976.1| predicted protein [Fibroporia radiculosa]
Length = 207
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 118/202 (58%), Gaps = 3/202 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD-PDVDR--LRISISHQSD 94
+S R + RT+ E++KDRG+ V+ EIN+ + FR+ Y + VDR L +H+++
Sbjct: 6 ESARLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYASNLGSVDRSQLNFFTNHKNN 65
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVE 154
P +I V F V V +R +++ + ++ + G+I+ N S + F +E
Sbjct: 66 PMTQIFVFFSDEKSVGVKTMRKMLTILEEKNIMQGIIVFPGNMTPSARKVISAMTNFALE 125
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
F DLLVNIT H L PKH+VL+ +EK++LL+ Y ++E QLPR+ D +A+YYGL+RG
Sbjct: 126 EFAEADLLVNITHHTLVPKHEVLSPKEKKELLETYRLKETQLPRIQTADPVARYYGLKRG 185
Query: 215 QVVKVTYSGEITESHVTYRCVW 236
VVK+T E + +YR +
Sbjct: 186 MVVKITRPSETAGRYASYRICF 207
>gi|148910132|gb|ABR18148.1| unknown [Picea sitchensis]
Length = 194
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 118/190 (62%), Gaps = 10/190 (5%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
RRTVL+ML DR Y V EIN + + F +G+DP + L I+ + ++ PS++I V F
Sbjct: 14 RRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSEQIFVFFPE 73
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNI 165
V V I++ + ++ + IL++Q + + + F +E+FQ +LLVNI
Sbjct: 74 EAKVGVKSIKTYVERMKSEGVFRA-ILVVQQEFSGK---------FHLEVFQEAELLVNI 123
Query: 166 TKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEI 225
+HVL P+ Q+LT +EK+ LL++Y+++E QLPRM + D +A+YYGL+RGQVVK+ E
Sbjct: 124 KEHVLVPEQQILTPEEKKTLLERYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSET 183
Query: 226 TESHVTYRCV 235
+VTYR V
Sbjct: 184 AGRYVTYRYV 193
>gi|351723363|ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 122/197 (61%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y R+TV++ML+DRG+ V EIN+S +F++ YG+ + L I+ S + + +I
Sbjct: 10 RLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V +++ +++ N + + IL+ Q +T A + +F +E+FQ
Sbjct: 70 VFFPDEPKVGVKTMKTYTNRM-NSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQE 128
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI +H L P+HQVLTD EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK
Sbjct: 129 AELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVK 188
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRFV 205
>gi|320168277|gb|EFW45176.1| DNA-directed RNA polymerase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 211
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 129/212 (60%), Gaps = 8/212 (3%)
Query: 32 VDNGSRDSL-RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA--IYGQD--PDVDRLR 86
+D+ + L R Y +TV++M DR Y V E+ +++ FRA G D P +R+
Sbjct: 1 MDSAEQQHLQRMYRIYQTVMQMCHDRHYIVTADELEQNLETFRAKVCTGNDLTPVRERML 60
Query: 87 ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITS--QATK 144
+ +++ DP+K ILV+F V V IR +I Q+ + G+I++ Q+ +TS ++T
Sbjct: 61 CNFAYKDDPTKSILVMFATEVKVGVAPIRQMIEQMSTQSIQRGIIVV-QDCLTSFARSTL 119
Query: 145 AVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 204
A + QF +E F+ +LLVNIT+H L PKH+VL+D +K LLK+Y ++E QLPR+ D
Sbjct: 120 AEAMPQFIIEEFKEAELLVNITRHTLVPKHEVLSDDDKIALLKQYKLKEAQLPRIHSTDP 179
Query: 205 IAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+A+Y GL RGQVV++T E ++TYR V
Sbjct: 180 VARYLGLRRGQVVRITRQSETAGRYITYRLVL 211
>gi|449543190|gb|EMD34167.1| hypothetical protein CERSUDRAFT_141708, partial [Ceriporiopsis
subvermispora B]
Length = 208
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP-DVDR--LRISISHQSD 94
DS + + RT+ E++KDRG+ V+ EIN+ + FR+ Y + VDR L +H S+
Sbjct: 6 DSAKLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYANNSGSVDRSQLNFFTNHTSN 65
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFKV 153
P +I V F V V +R ++ + ++ G+I+ N S V + Q+K+
Sbjct: 66 PLVQIFVFFSDEKSVGVKTMRKLLGILEEKNIQQGVIVFPGNMTPSARKVIVAMASQYKL 125
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F +DLLVNIT H L P+H+VLT +EK++LL+ Y ++E QLPR+ D +A+YYGL+R
Sbjct: 126 EEFSESDLLVNITHHTLVPRHEVLTAEEKKELLETYRLKETQLPRIQLADPVARYYGLKR 185
Query: 214 GQVVKVTYSGEITESHVTYRCVW 236
G VVK+T E + + +YR +
Sbjct: 186 GNVVKITRPSETSGRYASYRICF 208
>gi|449455411|ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 205
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
+ + +R+TVL+ML+DRG+ V E+ +S + F+ YG+ + L I+ S +++ S +I
Sbjct: 10 KLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMRNNSSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQIT 159
V F V V +R+ I+++ D + IL++Q +++S A ++ +F +E+FQ
Sbjct: 70 VFFPEEPKVSVKTVRTYINRM-KSDNVFRAILVVQEKLSSFARSSICEAPKFHLEVFQEA 128
Query: 160 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
+LLVNI HVL P+HQ+LT+++K+ LL++Y++++ QLPRM D IA+YYG++RGQVVK+
Sbjct: 129 ELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQLPRMQVTDPIARYYGMKRGQVVKI 188
Query: 220 TYSGEITESHVTYRCV 235
E +VTYR V
Sbjct: 189 IRPSETAGRYVTYRYV 204
>gi|212722800|ref|NP_001132429.1| hypothetical protein [Zea mays]
gi|194694360|gb|ACF81264.1| unknown [Zea mays]
gi|414586666|tpg|DAA37237.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 206
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRTV EML+DRGY V +I L F YG D L + + + PS +I
Sbjct: 10 RLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATKLNGPSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V IR+ + ++ N + G IL++Q +++ A AV ++ +E+FQ
Sbjct: 70 VFFPNEAKPGVKTIRNYVEKMKNENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEVFQE 128
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI HVL P+H +LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK
Sbjct: 129 AELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVK 188
Query: 219 VTYSGEITESHVTYRCV 235
+T + E ++TYR V
Sbjct: 189 ITRASETAGRYITYRYV 205
>gi|388499936|gb|AFK38034.1| unknown [Lotus japonicus]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 121/192 (63%), Gaps = 3/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TV++ML+DR Y V EIN+S +F+ YG + + L I+ + + PS +I V F
Sbjct: 15 RKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTKKDGPSDQIYVFFPD 74
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V V +++ +++ N + + IL+ Q+ +T A + +F++E+FQ +LLV
Sbjct: 75 EPKVGVKTMKTYTNRM-NSENVFRAILVCQSNLTPFAKTCISEMSSKFQLEVFQEAELLV 133
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +HVL P+HQ+L + EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 134 NIKEHVLVPEHQILNETEKKTLLERYTVKETQLPRIQITDPVARYYGLKRGQVVKIIRPS 193
Query: 224 EITESHVTYRCV 235
E ++TYR V
Sbjct: 194 ETAGRYITYRFV 205
>gi|348680008|gb|EGZ19824.1| hypothetical protein PHYSODRAFT_494802 [Phytophthora sojae]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 122/200 (61%), Gaps = 3/200 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R Y R+T ++ML +RGY V+ +E+ ++ + F+A +G +P + + I + DPS
Sbjct: 7 EASRLYRVRKTTVKMLHNRGYIVSENELVMTPEAFQAQFGDNPTREMMTILVEKIDDPSD 66
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEM 155
+ V F V V IR+ +++ + + +T IL++Q IT A +A+ ++K+E
Sbjct: 67 NLFVFFPEDTKVGVKPIRNYCNRMKD-ENVTKAILVVQEGITPFARQALNEMAPRYKIEH 125
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F+ T+LLV+IT+H L P H+VL EK LLK+Y I + QLPRM D IA+YYG+ RGQ
Sbjct: 126 FKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQ 185
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+ E +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRAV 205
>gi|224119828|ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 122/192 (63%), Gaps = 3/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TV++MLKDRGY V EI ++ + F + YG + + L I+ + ++D S +I V F
Sbjct: 15 RKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDSSDQIYVFFPE 74
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V V +++ +++ + + IL++Q +T A + +F +E+FQ +LLV
Sbjct: 75 EAKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLV 133
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +HVL P+HQVL+++EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK+
Sbjct: 134 NIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 193
Query: 224 EITESHVTYRCV 235
E +VTYR V
Sbjct: 194 ETAGRYVTYRYV 205
>gi|225445170|ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Vitis vinifera]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 124/197 (62%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + R+TV++MLKDRGY V EIN++ F + +G++ + L I+ + ++D S +I
Sbjct: 10 RLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V +++ +++ + + IL++Q +T A + +F +E+FQ
Sbjct: 70 VFFPEEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCINEISTKFHLEVFQE 128
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK
Sbjct: 129 AELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVK 188
Query: 219 VTYSGEITESHVTYRCV 235
+ E ++TYR V
Sbjct: 189 IIRPSETAGRYITYRYV 205
>gi|336370755|gb|EGN99095.1| hypothetical protein SERLA73DRAFT_181909 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383518|gb|EGO24667.1| hypothetical protein SERLADRAFT_468322 [Serpula lacrymans var.
lacrymans S7.9]
Length = 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 119/195 (61%), Gaps = 6/195 (3%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRILVVF 103
RT+ E++KDRG+AV+ EI++ + FR+ Y G D ++L + +++P+ +I V F
Sbjct: 13 RTIHELVKDRGFAVSDDEIHMDLVTFRSHYANNGGSVDRNQLNFFTNSRTNPTDQIFVFF 72
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDL 161
V V +R ++ I+ ++ I++ +T A K + Q+++E F +DL
Sbjct: 73 SDEKSVGVKTMRKLLG-ILEEKSIQRGIIVFPGNMTPSARKVIAAMAAQYRLEEFSESDL 131
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
LVNIT H L PKH+VLT +EK+ LL+KY ++E QLPR+ D +A+YYGL RGQVVK+T
Sbjct: 132 LVNITHHTLVPKHEVLTPEEKKTLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITR 191
Query: 222 SGEITESHVTYRCVW 236
E + + +YR +
Sbjct: 192 PSETSGRYASYRICF 206
>gi|159479030|ref|XP_001697601.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158274211|gb|EDO99994.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 3/195 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRT L+ML DRGY V+ EI + FR +G++P D L I + Q DP+++I
Sbjct: 6 RLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPTEQIF 65
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V I+ ++++ + + + I++ ++ T A A+ ++ +E F
Sbjct: 66 VFFPEEQKVGVKTIK-LLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLE 124
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++LLVNIT+HVL P+H++L+ EK LL +Y I+E QLPR+ DA+A+Y GL+RGQVV+
Sbjct: 125 SELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQLPRIQASDAVARYLGLQRGQVVR 184
Query: 219 VTYSGEITESHVTYR 233
+ E +VTYR
Sbjct: 185 IVRPSETAGRYVTYR 199
>gi|328770744|gb|EGF80785.1| hypothetical protein BATDEDRAFT_88106 [Batrachochytrium
dendrobatidis JAM81]
Length = 207
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSDPSKRILVVFC 104
RT+ EM+ RGY V+ +E+ +S+ DFR Y + +DR L + H S + ++LV F
Sbjct: 15 RTIHEMVSHRGYLVSKAELEMSLDDFRYTYTKGGIIDRQGLTFLVQHSSSENDQLLVFFT 74
Query: 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLL 162
V + I+ I +++++ + G ILI + +T A K V ++++E+FQ ++LL
Sbjct: 75 DDDSVGIKPIKKICERMISQSIMKG-ILIYKKSLTPSANKVVQEMAPKYQLELFQESELL 133
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNIT+H L P H+VLT EK+ LL +Y ++E QLPR+ D +A+YYGL+RGQVVK+
Sbjct: 134 VNITQHTLVPVHEVLTVDEKKTLLARYRLKETQLPRIQPSDPVARYYGLKRGQVVKIIRP 193
Query: 223 GEITESHVTYRCVW 236
E +VTYR +
Sbjct: 194 SETAGKYVTYRFCF 207
>gi|302854284|ref|XP_002958651.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
gi|300255976|gb|EFJ40254.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
Length = 202
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 4/198 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRT L+ML DRGY V+ EIN S FR +G++P D L I + Q DP++++
Sbjct: 6 RLWRVRRTCLQMLNDRGYLVSQEEINTSKDQFRDRFGENPRKDDLTILVPKQDDPTEQMF 65
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMFQI 158
V F V V I+ ++++ + + + I++ + T A A+ + K +E F
Sbjct: 66 VFFPEEQKVGVKTIK-LLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIEHFLE 124
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++LLVNIT+H L P+H++L+ EK LL +Y I+E QLPR+ DA+A+Y GL+RGQVV+
Sbjct: 125 SELLVNITEHTLVPEHRILSPDEKRTLLDRYKIKETQLPRIQSSDAVARYLGLQRGQVVR 184
Query: 219 VTYSGEITESHVTYR-CV 235
+ E +VTYR CV
Sbjct: 185 IVRPSETAGRYVTYRFCV 202
>gi|299749820|ref|XP_001836357.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|298408613|gb|EAU85541.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 208
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 122/204 (59%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP---DVDRLRISISHQSD 94
++ R + +T+ E++KDRG++V+ EIN+S++ FR +YG + D ++L H+ +
Sbjct: 6 ETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRLN 65
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FK 152
PS +I V F V V +R ++ I+ + I+I +TS A K + ++
Sbjct: 66 PSDQIFVYFTEEPNVGVKAMRKLLG-IMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 124
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E F DLLVNIT H L P+H+VL+ +EK+ LL++Y +++ QLPR+ D +A+YYGL
Sbjct: 125 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQLPRIQPMDPVARYYGLR 184
Query: 213 RGQVVKVTYSGEITESHVTYRCVW 236
RGQVVK+ E + + +YR +
Sbjct: 185 RGQVVKIIRPSETSGRYASYRICF 208
>gi|346470667|gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 122/197 (61%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRTV+EML+DR Y V E+N++ DF +G+ D L I+ + DPS +I
Sbjct: 9 RLFRIRRTVMEMLRDRNYLVVDYELNMTKLDFLHKFGEGVKRDDLTINKYKKGDPSDQIY 68
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V + I+ + +++ + +T IL++Q +T A + +F +E+F
Sbjct: 69 VFFPNDDKVGMKHIKKCV-ELMKTENVTRSILVVQQNLTPFAKAHLLELTPKFILEVFLE 127
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI KHVL P+HQVLT++EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK
Sbjct: 128 AELLVNIKKHVLIPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVK 187
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRYV 204
>gi|226530454|ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 210
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 123/197 (62%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y RRTV++ML+DRGY V E+ S +DF +G+ + L I+ ++DPS +I
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQI 158
V F V + I+ + +++ + ++ +L+LQ +T A + + K+ E+FQ
Sbjct: 74 VFFPNDDKVGMKHIKKYV-EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++L+NI +HVL P+HQVLT++EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 193 IIRPSETAGRYVTYRYV 209
>gi|291000790|ref|XP_002682962.1| predicted protein [Naegleria gruberi]
gi|284096590|gb|EFC50218.1| predicted protein [Naegleria gruberi]
Length = 229
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 24/228 (10%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD---------- 81
++N + +S R + R+TVL+ML RGY V SE N+ + +F + +G P+
Sbjct: 1 MNNANSESYRLWRIRKTVLQMLDARGYMVLESEKNMDLAEFESKFGTGPNNVSQSGQARG 60
Query: 82 -----VDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILIL-- 134
DRL I S DPS+ I V F + + I+ S++ + + ++++
Sbjct: 61 YTTIGRDRLSIVTSMADDPSEMIFVFFPATKAIGMKQIKDYHSKMKDNNVKRAILVLRPA 120
Query: 135 ----QNQITSQATKAVGLFQ---FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
Q ++SQA +A+ Q + +E F+ T+LLVNIT+HVL P+H L + E+LL+
Sbjct: 121 DSFQQKDLSSQAKRAIEALQAIGYILETFKETELLVNITEHVLVPQHVPLNKAQHEELLQ 180
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y ++E QLPRM D IA+YYGL+RG +VK+ S E +VTYR V
Sbjct: 181 RYKLKETQLPRMKVTDPIARYYGLQRGAIVKIIRSSETAGRYVTYRYV 228
>gi|351722355|ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 121/197 (61%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y R+TV++ML+DR + V EIN+S +F++ YG+ + L I+ S + + +I
Sbjct: 10 RLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V V +++ +++ N + + IL+ Q +T A + +F +E+FQ
Sbjct: 70 VFFPDEPKVGVKTMKTYTNRM-NSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQE 128
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LLVNI +H L P+HQVLTD EK+ LL++Y+++E QLPR+ D +A+YYGL+RGQVVK
Sbjct: 129 AELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVK 188
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 189 IIRPSETAGRYVTYRFV 205
>gi|357500693|ref|XP_003620635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495650|gb|AES76853.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 239
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 36/231 (15%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D + Y R+T+L+ML DR Y V +++ +S +DF +G+ ++L I+ +H+++ S+
Sbjct: 7 DITKLYRIRKTILQMLFDRNYLVDETQLTMSREDFIFKFGEHMKREQLEINTTHRNNLSE 66
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG----LFQFKV 153
+I V F + VN++R II++++ + G I++ QN+++ A KAV + ++
Sbjct: 67 KICVFFFDDAKLGVNIVRGIINRMLKENVDNG-IMVCQNKLSPAARKAVAGMSSIGSKRL 125
Query: 154 EMFQITD-------------------------------LLVNITKHVLKPKHQVLTDQEK 182
E+F TD LLVNITKH P HQVLTD EK
Sbjct: 126 EVFMDTDTCRTAGTPSIKSVGAIELDSLMCRWWKKEDELLVNITKHERVPPHQVLTDTEK 185
Query: 183 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+ LLK+Y++++ QLP++L D +A+YYGL RGQVV++ E +++TYR
Sbjct: 186 KALLKRYTVKDTQLPKILTNDPVARYYGLRRGQVVRIIRPSETAGTYITYR 236
>gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa Japonica Group]
Length = 205
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 121/200 (60%), Gaps = 3/200 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RRTV++ML+DRGY V +I+L DF A +G D D L S + + +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEM 155
+I V F V IRS + ++ G IL++Q +++ A AV +F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRSYVERMKQESVFNG-ILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
FQ +LLVNI H L P+H++LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQ
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQ 184
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+ + E +VTYR V
Sbjct: 185 VVKIIRASETAGRYVTYRYV 204
>gi|395332226|gb|EJF64605.1| RPB5 subunit of DNA-directed RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 211
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 4/203 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSD 94
+S R + RT+ E++KDRG+ VA EIN+ + FR+ Y Q VDR L +H+ +
Sbjct: 9 ESARLWKVNRTIHELVKDRGFQVADDEINMDLATFRSHYASQSGTVDRSQLNFFTNHRDN 68
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFKV 153
P +I + F V V +R ++ + ++ G+I+ N S V + Q+K+
Sbjct: 69 PMLQIFIFFTDEKSVGVKTMRKLLGILEEKNIQQGIIVFPGNMTPSARKVIVAMASQYKL 128
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F +DLLVNIT H L P+H++LT ++K++LL+ Y ++E QLPR+ D +A+YYGL+R
Sbjct: 129 EEFSESDLLVNITHHTLVPRHELLTPEQKKELLETYRLKETQLPRIQLADPVARYYGLKR 188
Query: 214 GQVVKVTYSGEITESHVTYRCVW 236
G VVK+T E + + +YR +
Sbjct: 189 GNVVKITRPSETSGRYASYRICF 211
>gi|392594893|gb|EIW84217.1| RPB5 subunit of DNA-directed RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 207
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 119/195 (61%), Gaps = 6/195 (3%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRILVVF 103
RTV E++KDRGY V+ EI++ F++ Y G D ++L + Q +P+++I + F
Sbjct: 14 RTVHELVKDRGYQVSDDEIHMDFATFKSHYANNGGSVDRNQLNFFTNSQENPTEQIFIYF 73
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDL 161
V + +R +I+ I+ ++ I+I +T A K + Q+++E F +DL
Sbjct: 74 SDERSVGIKTMRKLIA-ILEEKSIQRAIIIFPGAMTGAARKVIVAMASQYRIEEFSESDL 132
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
LVNIT H+L PKH+VLT ++K+ LL+KY +++ QLPR+ D +A+YYGL RGQVVK+T
Sbjct: 133 LVNITHHILVPKHEVLTPEQKKALLEKYRLKDTQLPRIQLADPVARYYGLRRGQVVKITR 192
Query: 222 SGEITESHVTYRCVW 236
E + + +YR +
Sbjct: 193 PSETSGRYASYRICF 207
>gi|390594286|gb|EIN03698.1| DNA-directed RNA polymerase RPB5 subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 208
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 116/203 (57%), Gaps = 4/203 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSD 94
+S + + RT+ E++KDRG+ V+ EI + + FR Y G D ++L + +++
Sbjct: 6 ESAKLWKVNRTIHELVKDRGFQVSDDEIQMDLATFRQAYANNGGSVDRNQLNFFTNSRAN 65
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL-FQFKV 153
P+ +I V F V V +R ++ + + G+I+ N S V + QF++
Sbjct: 66 PADQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIIFPGNMTPSARKVIVAMSAQFRL 125
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F +DLLVNIT H L P+H+VLT +EK LL+KY ++E QLPR+ D +A+YYGL R
Sbjct: 126 EEFSESDLLVNITHHTLVPRHEVLTPEEKRNLLEKYRLKETQLPRIQLADPVARYYGLRR 185
Query: 214 GQVVKVTYSGEITESHVTYRCVW 236
GQVVK+T E + +YR +
Sbjct: 186 GQVVKITRPSETAGRYASYRICF 208
>gi|326492457|dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511589|dbj|BAJ91939.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 123/192 (64%), Gaps = 3/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
RRTV+ ML+DRGY V E++++ +DF+ YG+ + + I+ ++DP+ +I V F
Sbjct: 19 RRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQIYVFFPN 78
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQITDLLV 163
V + I+ + +++N + ++ IL++Q +T A + + K+ E+FQ ++L+
Sbjct: 79 DEKVGMKHIKKYV-EMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLI 137
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +HVL P+HQVL ++EK+ LL +Y+++E QLPR+ D IA+YYGL+RGQVVK+
Sbjct: 138 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 197
Query: 224 EITESHVTYRCV 235
E +VTYR V
Sbjct: 198 ETAGRYVTYRYV 209
>gi|409048291|gb|EKM57769.1| hypothetical protein PHACADRAFT_251606 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSDPSKRILVVF 103
RT+ E+++DRG+ V+ EI++ + FR++Y Q VDR L +HQ++P ++I F
Sbjct: 15 RTIHELVRDRGFQVSDDEIHMDLATFRSLYANQMGSVDRSQLNFFTNHQNNPMEQIFTFF 74
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDL 161
V V +R I++ + ++ G+I + +T A K + Q+K+E F DL
Sbjct: 75 SDEKSVGVKTMRKILNILEEKNIQRGII-VFPGIMTPSARKVIVAMASQYKLEEFSEADL 133
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
LVNIT H L P+H VLT ++K+ LL+KY ++E QLPR+ D +A+YYGL RGQVVK+T
Sbjct: 134 LVNITHHTLVPRHDVLTPEQKKNLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITR 193
Query: 222 SGEITESHVTYRCVW 236
E + + +YR +
Sbjct: 194 PSETSGRYASYRICF 208
>gi|115440569|ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|215737136|dbj|BAG96065.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 120/192 (62%), Gaps = 3/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
RRTV++ML+DRGY V E+ + +DF YG+ + L I+ ++DPS +I V F
Sbjct: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQITDLLV 163
V + I+ + +++ + ++ +L+LQ +T A + + K+ E+FQ +LL+
Sbjct: 79 DDKVGMKHIKKYV-EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +HVL P+HQVL ++EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK+
Sbjct: 138 NIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPS 197
Query: 224 EITESHVTYRCV 235
E +VTYR V
Sbjct: 198 ETAGRYVTYRYV 209
>gi|388855814|emb|CCF50598.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Ustilago hordei]
Length = 236
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + RT+ E+++DRGY VA EIN+ ++ F++ Y G D +L H
Sbjct: 5 RETVRLWRVNRTIHELVRDRGYQVADDEINIDLETFKSEYAPTGGSVDRTKLNFFTEHSE 64
Query: 94 DPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--F 151
++R+ V + V V +R IS + RD G+I I ++TS A K + + F
Sbjct: 65 HENQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGII-IWPEKMTSAARKVIDAMRGTF 123
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F+ LLVNIT H L PKH+ L QEK++LL +Y ++E QLPR+ + D +A+Y+GL
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPQEKKELLARYRLKETQLPRIQQADPVARYFGL 183
Query: 212 ERGQVVKVTYSGEITESHVTYR 233
+RGQVVK+ S E + + +YR
Sbjct: 184 QRGQVVKIIRSSETSGRYCSYR 205
>gi|301106302|ref|XP_002902234.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
gi|262098854|gb|EEY56906.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
Length = 206
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 3/200 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R Y R+T ++ML +R Y V+ +E+ ++ + F+ +G +P + + I + DPS
Sbjct: 7 EASRLYRVRKTTVKMLHNRSYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKIDDPSD 66
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEM 155
+ V F V V IR+ +++ + + +T IL++Q IT A +A+ ++K+E
Sbjct: 67 NLFVFFPEDTKVGVKPIRNYCNRMKD-ENVTKAILVVQEGITPFARQALNEMAPRYKIEH 125
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F+ T+LLV+IT+H L P H+VL EK LLK+Y I + QLPRM D IA+YYGL RGQ
Sbjct: 126 FKETELLVDITEHTLVPVHRVLDRNEKAALLKRYRIRDSQLPRMQVTDPIARYYGLNRGQ 185
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+ E +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRAV 205
>gi|343424911|emb|CBQ68449.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Sporisorium reilianum SRZ2]
Length = 208
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 6/202 (2%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + RT+ E+++DRGY VA EIN+ ++ F+A Y G D +L H
Sbjct: 5 RETVRLWRVNRTIHELVRDRGYQVADDEINVDLETFKAEYAPTGGAVDRTKLNFFTEHSE 64
Query: 94 DPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--F 151
++R+ V + V V +R IS + RD G+I I ++TS A K + + F
Sbjct: 65 HANQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGII-IWPEKMTSAARKVIDAMRGTF 123
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F+ LLVNIT H L PKH+ L QEK++LL++Y ++E QLPR+ + D +A+Y+GL
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPQEKKELLQRYRLKETQLPRIQQADPVARYFGL 183
Query: 212 ERGQVVKVTYSGEITESHVTYR 233
+RGQVVK+ E + + +YR
Sbjct: 184 QRGQVVKIIRPSETSGRYCSYR 205
>gi|443896772|dbj|GAC74115.1| hypothetical protein PANT_10d00023 [Pseudozyma antarctica T-34]
Length = 283
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 122/202 (60%), Gaps = 6/202 (2%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + +T+ E+++DRGY VA EIN+ ++ F+A Y G D +L H +
Sbjct: 80 RETVRLWRVNKTIHELVRDRGYQVADDEINIDLESFKAEYAPTGGSVDRTKLNFFTEHSA 139
Query: 94 DPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--F 151
++R+ V + V V +R IS + RD G+I I +++TS A K + + F
Sbjct: 140 HENQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGII-IWPDKMTSAARKVIDAMRGTF 198
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F+ LLVNIT H L P+H+ L EK++LL++Y ++E QLPR+ + D +A+Y+GL
Sbjct: 199 HLEDFEEAYLLVNITHHHLVPRHEPLYPDEKKELLQRYRLKETQLPRIQQADPVAKYFGL 258
Query: 212 ERGQVVKVTYSGEITESHVTYR 233
+RGQVVK+T E + + +YR
Sbjct: 259 QRGQVVKITRPSETSGRYCSYR 280
>gi|353236892|emb|CCA68877.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Piriformospora indica DSM 11827]
Length = 211
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 126/200 (63%), Gaps = 5/200 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISI-SH-QSDPSK 97
R + RT+ E+++DRGYAVA EIN+++ +F+ + + V DR + +H ++DP+
Sbjct: 13 RLWKVNRTIHELVRDRGYAVADEEINMTLDEFKQQFARAGSVVDRASLGFWAHLRNDPAT 72
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMF 156
I V FC V V ++ ++ + ++ + G+I I N +T A K + G+ Q+++E F
Sbjct: 73 SIYVYFCDERSVGVQHMKKLLGILDEKNIVRGII-IYPNVLTPAARKVLTGMPQYQLEEF 131
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
T+LLVNIT+H L P+H++L+ ++K LL++Y ++E QLPR+ D +A+YYGL RGQV
Sbjct: 132 AETELLVNITQHTLVPQHEILSPEQKRLLLERYRLKETQLPRIQLGDPVARYYGLRRGQV 191
Query: 217 VKVTYSGEITESHVTYRCVW 236
VK+T E + +YR +
Sbjct: 192 VKITRPSETAGRYASYRICF 211
>gi|444321044|ref|XP_004181178.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
gi|387514222|emb|CCH61659.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
Length = 215
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 119/210 (56%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM++DRGY + EI+LS++DF++ Y R +IS Q++
Sbjct: 5 NERNVSRLWRTFRTVKEMVRDRGYFITQEEIDLSLEDFKSKYTNSMGTPE-RKNISFQAN 63
Query: 95 PSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ L V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEETLAKFPELGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+D+EK++LLKKY ++E QLPR+ K D
Sbjct: 123 LVPSIPPATIETFHEASLIVNITHHELVPKHIRLSDEEKKELLKKYRLKESQLPRIQKAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETAGRYASYR 212
>gi|384497437|gb|EIE87928.1| hypothetical protein RO3G_12639 [Rhizopus delemar RA 99-880]
Length = 188
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 6/189 (3%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSDPSKRILVVFCGPGIV 109
M+ DRGY V+ SE+++ ++ F+ + DVDR L + + DP+ ++LV F V
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 110 KVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMFQITDLLVNITK 167
V +R + ++ + G I I Q +TS A K + K +E FQ +LLVNIT
Sbjct: 61 GVKPLRVYVERMAQQQIPKG-ICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNITH 119
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
HVL PKH+VLT +EK LL++Y ++E QLPR+ D +A+YYGL+RGQVVK+ E
Sbjct: 120 HVLVPKHEVLTAEEKSTLLQRYRLKETQLPRIQHTDPVARYYGLKRGQVVKILRESETAG 179
Query: 228 SHVTYR-CV 235
+V+YR C+
Sbjct: 180 RYVSYRLCI 188
>gi|308803436|ref|XP_003079031.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
gi|116057485|emb|CAL51912.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
Length = 1124
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/199 (36%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + R+T+ +ML RGY V+ E+ F +G++P D L I + DPS+ I
Sbjct: 927 RLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDDPSENIF 986
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ---FKVEMFQ 157
V F V V I+ + ++ + +I++ Q +T A +++ Q F +E FQ
Sbjct: 987 VFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVV-QASLTPFAKQSLLECQTQKFYIEQFQ 1045
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
T+LLVNI HVL P+H +L+D++K LL++Y +++ QLPR+ D IA+YYG+ RGQVV
Sbjct: 1046 ETELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQLPRIQMHDPIARYYGMRRGQVV 1105
Query: 218 KVTYSGEITESHVTYR-CV 235
++ E +VTYR CV
Sbjct: 1106 RIIRPSETAGRYVTYRLCV 1124
>gi|449019061|dbj|BAM82463.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 211
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 12/211 (5%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAV--ALSEINLSVQDFRAIYGQDPDVDRLRISIS 90
D + ++ R + RRT+LEML+DRGY V +++ L +++F + R R S++
Sbjct: 4 DIQADETRRLHRIRRTILEMLRDRGYLVLPTKTDLELPLEEFAHKFDA---AGRARESLT 60
Query: 91 ----HQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
H++D S +I V F V V IR ++ + L +I++ Q +T A +AV
Sbjct: 61 MLRQHRNDRSNQIYVFFPKEEKVGVKPIREYCLRLETENVLRAIIVV-QTGLTPIAKQAV 119
Query: 147 GLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDA 204
Q F +E+FQ +LLVNIT+H L PKH+VLT ++K+ LLK+Y +++ QLPR+L+ D
Sbjct: 120 AELQPRFHLELFQEAELLVNITRHQLVPKHEVLTAEQKKTLLKRYQLKDTQLPRILQSDP 179
Query: 205 IAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+A+Y+G+ RGQV+K+T + E +VTYR V
Sbjct: 180 VARYFGVTRGQVLKITRNSETAGRYVTYRLV 210
>gi|449462431|ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 123/201 (61%), Gaps = 10/201 (4%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + R+TV +ML+DRGY V EI+++ + F+ YG++ + + I+ S ++D S +I
Sbjct: 10 RLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN------QITSQATKAVGLFQFKVE 154
V F V + +++ +++ + + ++++ QN S+AT F +E
Sbjct: 70 VFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK----SFHLE 125
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
+FQ +LLVNI HVL P+HQ+L ++EK+ LL++Y+++E QLPR+ D +A+YYGL+RG
Sbjct: 126 VFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRG 185
Query: 215 QVVKVTYSGEITESHVTYRCV 235
QVVK+ E +VTYR V
Sbjct: 186 QVVKIIRPSETAGRYVTYRYV 206
>gi|17507947|ref|NP_491961.1| Protein RPB-5 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2.1|RPAB1_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
gi|351064177|emb|CCD72467.1| Protein RPB-5 [Caenorhabditis elegans]
Length = 211
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 125/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDAKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>gi|392576849|gb|EIW69979.1| hypothetical protein TREMEDRAFT_29545 [Tremella mesenterica DSM
1558]
Length = 218
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 117/210 (55%), Gaps = 14/210 (6%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVD-----------RL 85
R+ R + RTV EM++DRGY VA EI S +DF+ +G V+ +
Sbjct: 7 RELARLWRVSRTVHEMVRDRGYLVAEYEIEQSFEDFKDAHGSSGVVEMKKELIVNSRNNM 66
Query: 86 RISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
+ H R+LV FC V + I+ + Q+ +R G ILI +++ S A KA
Sbjct: 67 HFTCDHSERTGDRLLVWFCPERNVPKSSIKIFLGQMEHRSANKG-ILIHPDKMGSAANKA 125
Query: 146 VGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
+ Q + +E F DLLVNIT+H L PKH ++ +EK L+K+Y ++E QLPR++ D
Sbjct: 126 MMEMQAEYHLESFSEADLLVNITRHFLVPKHTIMRPEEKAALIKRYRLKETQLPRIMITD 185
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A+YYG+ RGQV+K+ + E ++TYR
Sbjct: 186 PVAKYYGMRRGQVMKIERASETAGRYITYR 215
>gi|384249623|gb|EIE23104.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 117/198 (59%), Gaps = 4/198 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y R+T LEML DRGY +A + ++ + F+ +G DP D L + Q DP+++I
Sbjct: 6 RLYRIRKTCLEMLHDRGYLIAQDDRQMTKEGFKDRFGDDPRKDDLTVLAPKQDDPTEQIF 65
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V + V V I++ ++ N + ++ I++ +T A + + ++ +E+F
Sbjct: 66 VFYPEEDKVGVKTIKTFAERMRN-EGVSRAIMVTMASMTPFAKQCLAEMAPKYYIEVFNA 124
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LL+NIT+HVL P+H +LT +EK LL +Y +++ QLPR+ D +A+YYG++RG VV+
Sbjct: 125 AELLINITQHVLVPEHHLLTPEEKRTLLDRYKVKDTQLPRIQFHDPVARYYGMQRGHVVR 184
Query: 219 VTYSGEITESHVTYR-CV 235
+ E +VTYR CV
Sbjct: 185 IVRPSETAGRYVTYRLCV 202
>gi|392564185|gb|EIW57363.1| DNA-directed RNA polymerase RPB5 subunit [Trametes versicolor
FP-101664 SS1]
Length = 209
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 4/203 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSD 94
+S + + RT+ E++KDRG+ V+ EIN+ + FR Y Q VDR L +H+ +
Sbjct: 7 ESAKLWKVNRTIHELVKDRGFQVSDDEINMDLSTFRDHYANQSGSVDRSQLNFFTNHRDN 66
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKV 153
PS +I + F V V +R ++ + + G+I+ N S V + +K+
Sbjct: 67 PSVQIFIFFTDEKSVGVKTMRKLLGILEEKAIQQGIIVFPGNMTPSARKVIVAMASTYKL 126
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F +DLLVNIT H L PKH++LT Q+K++LL+ Y ++E QLPR+ D +A+YYGL+R
Sbjct: 127 EEFSESDLLVNITHHTLVPKHELLTPQQKKELLETYRLKETQLPRIQLADPVARYYGLKR 186
Query: 214 GQVVKVTYSGEITESHVTYRCVW 236
G VVK+T E + + +YR +
Sbjct: 187 GNVVKITRPSETSGRYASYRICF 209
>gi|222619416|gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 119/192 (61%), Gaps = 3/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
RRTV++ML+DRGY V E+ + +DF YG+ + L I+ ++DPS +I V F
Sbjct: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQITDLLV 163
V + I+ + +++ + ++ +L+LQ +T A + + K+ E+FQ +LL+
Sbjct: 79 DDKVGMKHIKKYV-EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +HVL P+HQVL + EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK+
Sbjct: 138 NIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPS 197
Query: 224 EITESHVTYRCV 235
E +VTYR V
Sbjct: 198 ETAGRYVTYRYV 209
>gi|341885241|gb|EGT41176.1| CBN-RPB-5 protein [Caenorhabditis brenneri]
gi|341885706|gb|EGT41641.1| hypothetical protein CAEBREN_11585 [Caenorhabditis brenneri]
Length = 211
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 125/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLEHFKETFGDRPSEKKPARADLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPDDTKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>gi|312095335|ref|XP_003148322.1| RPB-5 protein [Loa loa]
gi|307756513|gb|EFO15747.1| DNA-directed RNA polymerase I [Loa loa]
Length = 211
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 124/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-----QDPDVDRLRISISHQ 92
++ + + R+T+++M DRGY V E++ ++++F+ +G + P + L + ++H
Sbjct: 7 ETYKLWRVRKTIMQMCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ +T I+++Q +T A +A+ +
Sbjct: 67 DDPTDQMFVFFPEDSKIGIKTIKAICQQM-QEQAITRAIIVVQTGMTPSAKQAIADMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T++EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YTLEQFLEAELMVNITEHELVPEHVVMTNEEKNELLGRYKLKDTQLPRIQQSDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>gi|58259413|ref|XP_567119.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107497|ref|XP_777633.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223256|gb|AAW41300.1| DNA-directed RNA polymerases ii 24 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 221
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 17/217 (7%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD--------PDVDR 84
+ +R+ R + RTV EM++DRGY +A EIN+S ++F+ +G P D+
Sbjct: 3 NEANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADK 62
Query: 85 ------LRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI 138
+ H++D + +I V FC V +++ I + G+I I ++
Sbjct: 63 SSSRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGII-IWSEKM 121
Query: 139 TSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+ A K + Q + +E F +DLLVNITKH L PKH V+ +EK L+K+Y ++E QL
Sbjct: 122 SPAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQL 181
Query: 197 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
PR++ D +A+YYGL+RGQV+K+ + E ++TYR
Sbjct: 182 PRIMITDPVAKYYGLKRGQVMKIERASETAGRYITYR 218
>gi|268568358|ref|XP_002640230.1| C. briggsae CBR-RPB-5 protein [Caenorhabditis briggsae]
gi|296439763|sp|A8XGH1.1|RPAB1_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 211
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 125/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDTKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>gi|357125497|ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 121/192 (63%), Gaps = 3/192 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R TV+ ML+DRGY V E+ ++ +DF YG+ + L I+ ++DP+ +I V F
Sbjct: 19 RSTVMHMLRDRGYLVVEHELAMTRRDFERKYGESFHREDLLINKCKKNDPNDQIYVFFPN 78
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQITDLLV 163
V + I+ + +++N + ++ ++++Q +T A + + K+ E+FQ ++L+
Sbjct: 79 DEKVGMKHIKKYV-EMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLI 137
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +HVL P+HQVLT+ EK+ LL++Y+++E QLPR+ D IA+YYGL+RGQVVK+
Sbjct: 138 NIKEHVLVPEHQVLTNDEKKTLLERYTLKETQLPRIQITDPIARYYGLKRGQVVKIIRPS 197
Query: 224 EITESHVTYRCV 235
E +VTYR V
Sbjct: 198 ETAGRYVTYRYV 209
>gi|449450868|ref|XP_004143184.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524595|ref|XP_004169307.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 119/193 (61%), Gaps = 4/193 (2%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TVL+MLKDRGY V E+++S F+ +G++ + L I+ S +++ S +I V F
Sbjct: 15 RKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPE 74
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF---QFKVEMFQITDLL 162
V + ++ + + ++ + + I ++Q +T A + + +E+FQ T+LL
Sbjct: 75 EPKVGIKIVETYVGRMKSENVFRA-IFVVQLNLTPFARNKIAELSSSKLHLEVFQETELL 133
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNI +HVL P+HQ LTD+EK+ LL +Y+++E QLPRM D I++YYGL+RG VVK+
Sbjct: 134 VNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRP 193
Query: 223 GEITESHVTYRCV 235
E +VTYR V
Sbjct: 194 SETAGRYVTYRYV 206
>gi|409078308|gb|EKM78671.1| hypothetical protein AGABI1DRAFT_114282, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426199299|gb|EKV49224.1| hypothetical protein AGABI2DRAFT_191302, partial [Agaricus bisporus
var. bisporus H97]
Length = 208
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP---DVDRLRISISHQSDPSKRILVVF 103
RT+ E+++DRG+ V+ EI++ +Q FR Y + D ++L + +++P+ +I V F
Sbjct: 15 RTIHELVRDRGFLVSDEEIHMDLQHFRDQYANNSGMVDRNQLNFYTTSRANPTDQIFVYF 74
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL-FQFKVEMFQITDLL 162
V V +R ++S + + G+I+ N S V + Q+++E F DLL
Sbjct: 75 TDERSVGVKTMRKLLSILEEKSIQRGIIVFPGNMTPSARKVIVAMSAQYRLEEFSEADLL 134
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNI H L P+H+VLT +EK+ LL+KY ++E QLPR+ D +A+YYGL RGQVVK+T
Sbjct: 135 VNIVHHTLVPRHEVLTPEEKKVLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITRP 194
Query: 223 GEITESHVTYRCVW 236
E + + +YR +
Sbjct: 195 SETSGRYASYRICF 208
>gi|241017563|gb|ACS66689.1| RNA polymerase II B subunit [Caenorhabditis brenneri]
Length = 211
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 124/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ + F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPDDTKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>gi|302683883|ref|XP_003031622.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
gi|300105315|gb|EFI96719.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
Length = 210
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 117/201 (58%), Gaps = 6/201 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDR--LRISISHQSDPSK 97
R + RT+ E++KDRG+ VA EINLS+ DF++ Y Q VDR L +H+ D +
Sbjct: 11 RLWKVNRTIHELVKDRGFQVADYEINLSLDDFKSQYASQSRSVDRNQLNFFTNHRDDTTD 70
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEM 155
+I V F V V +R ++ + + G+I+ N +T A K + Q +++E
Sbjct: 71 QIFVFFSDERSVGVKTMRKLLGILEEKGIRRGIIIFPGN-MTPAARKVIVAMQSQYRLEE 129
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F DLLVNIT H L P+H VL +EK +LL++Y ++E QLPR+ D +A+Y+GL RGQ
Sbjct: 130 FSEADLLVNITHHTLVPQHIVLKPEEKRELLERYRLKETQLPRIQIADPVARYFGLRRGQ 189
Query: 216 VVKVTYSGEITESHVTYRCVW 236
VVK+ E + + +YR +
Sbjct: 190 VVKIIRPSETSGRYASYRICF 210
>gi|393221284|gb|EJD06769.1| RPB5 subunit of DNA-directed RNA polymerase [Fomitiporia
mediterranea MF3/22]
Length = 212
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 6/207 (2%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP---DVDRLRISISH 91
G ++ R + RT+ E++KDRG+ V+ EI + + F+ + D ++L +H
Sbjct: 7 GPDEAARLWRVNRTIHELIKDRGFQVSDEEIEVDLVTFKQQFANSSGSVDRNQLNFFATH 66
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-- 149
+SDPS I + F V + ++ + I+ ++ I+I +T A K +
Sbjct: 67 ESDPSDHIFIYFSDQKSVGIKTMQKVCI-ILEEKSINKGIVIFPGTMTPSARKFIVQMSV 125
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
++++E F +DLLVNIT+H+L P H+VLT +EK+ LL+KY ++E QLPR+ D +A+YY
Sbjct: 126 RYRLEEFSESDLLVNITRHILVPHHEVLTPEEKDTLLEKYRLKETQLPRIQLADPVARYY 185
Query: 210 GLERGQVVKVTYSGEITESHVTYRCVW 236
GL RGQVVK+T E + +YR +
Sbjct: 186 GLRRGQVVKITRPSETAGRYASYRICF 212
>gi|213405090|ref|XP_002173317.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001364|gb|EEB07024.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 211
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 7/203 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQSDP 95
R+ ++ + +TV +++ DRGYAV+ SE+ L++ FRA++ G ++DR +S + P
Sbjct: 7 RNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFYAKPPP 66
Query: 96 SK---RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
I V F V + +R+ + + + + TG ILI N +T ATK + Q
Sbjct: 67 GSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANNMTPSATKIISTVTGQ 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
F +E FQ +DL+VNIT H L PKH +LT +EK++LL +Y + E QLPR+ D +A+Y G
Sbjct: 126 FTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQLPRIQMADPVARYLG 185
Query: 211 LERGQVVKVTYSGEITESHVTYR 233
L+RGQVVK+ E + + +YR
Sbjct: 186 LKRGQVVKIVRRSETSGRYNSYR 208
>gi|326503328|dbj|BAJ99289.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RRTV++ML+DRGY V ++++L++ +F YG D L I+ + + +P +
Sbjct: 7 ETSRLFRVRRTVMQMLRDRGYLVVDADVDLTMGEFVGRYGDPVRRDDLVINRAKKDNPDE 66
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEM 155
+I + F V ++S ++ + G++++ Q +GL Q ++E+
Sbjct: 67 QIYIFFPNEPKPGVKTVKSYAEKMKQENVYNGILVVQQALTAFSRNLLLGLSQEKLQLEV 126
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
FQ +LL+NI H L P+H +LT ++K+ LL+KY+++E QLPR+ D IA+YYG+ RGQ
Sbjct: 127 FQEGELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQLPRIQISDPIARYYGMRRGQ 186
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+T E +VTYR V
Sbjct: 187 VVKITRPSETAGKYVTYRYV 206
>gi|414586665|tpg|DAA37236.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 203
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 2/195 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRTV EML+DRGY V +I L F YG D L + + + PS +I
Sbjct: 10 RLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATKLNGPSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITD 160
V F V IR+ + ++ N + G IL++Q +++ A AV K + + +
Sbjct: 70 VFFPNEAKPGVKTIRNYVEKMKNENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEE-AE 127
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
LLVNI HVL P+H +LT ++K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK+T
Sbjct: 128 LLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKIT 187
Query: 221 YSGEITESHVTYRCV 235
+ E ++TYR V
Sbjct: 188 RASETAGRYITYRYV 202
>gi|440803359|gb|ELR24265.1| RNA polymerase Rpb5, Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 204
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSDPSKR 98
R +L R+TVL+ML+DRGY V S++++ FR+ + + ++R L + + + DP+ +
Sbjct: 6 RVFLVRKTVLQMLQDRGYIVPQSDLDMDRDSFRSKFMGESALNREALTLLMQKKDDPTDQ 65
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMF 156
I V + V V ++ ++ + + I+I+Q +T+ A + ++ +E F
Sbjct: 66 IFVFWPEDLKVGVRPVKKYCDRM-KEEAVFRAIVIIQQTLTAFAKQVFAEMAPRYTIEHF 124
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
Q +LLVNIT+H+L PKH++LT+ EK+ LL KY +E+ QLPR+ D +A+YYGL++GQV
Sbjct: 125 QEAELLVNITEHILVPKHKLLTELEKQTLLAKYKLEDSQLPRIQVNDPVARYYGLQKGQV 184
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 185 VKIIRPSETAGRYVTYRLV 203
>gi|358054002|dbj|GAA99801.1| hypothetical protein E5Q_06504 [Mixia osmundae IAM 14324]
Length = 298
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 12/212 (5%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--- 89
D+ RD R + RTV E+ +DRGY ++ EIN+S+Q F Y + +DR ++
Sbjct: 3 DDTERDIARVWRVNRTVRELCRDRGYTMSEQEINMSLQKFTESYTMNGHLDRTALNFHAS 62
Query: 90 ------SHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
+ ++I V F + + +R ++ +++R+ +G ILI + IT A
Sbjct: 63 RHVPVAGREETEVQQIYVFFAEERSLGIKPVREFLTVLLDRNLHSG-ILIYKQSITPPAL 121
Query: 144 KAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLK 201
+A+ E ++LLVNIT+H L PKH+VL+ +K +LLKKY +++ QLPR+L
Sbjct: 122 RALAQAGQHTTAEALSESELLVNITQHTLVPKHEVLSPMDKAELLKKYRLKDTQLPRILL 181
Query: 202 KDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
D +A+YYGL+RGQVVK+T E + +YR
Sbjct: 182 SDPVARYYGLKRGQVVKITRPSETAGRYASYR 213
>gi|308505230|ref|XP_003114798.1| CRE-RPB-5 protein [Caenorhabditis remanei]
gi|308258980|gb|EFP02933.1| CRE-RPB-5 protein [Caenorhabditis remanei]
Length = 211
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 124/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKEQYGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ ++++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDTKIGIKTIKAICQQMQEQN-ISRAVIVVQIGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTADEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>gi|45190642|ref|NP_984896.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|54036391|sp|Q757H7.1|RPAB1_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|44983621|gb|AAS52720.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|374108119|gb|AEY97026.1| FAER036Wp [Ashbya gossypii FDAG1]
Length = 215
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 13/211 (6%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS
Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
+P++ L V FC V + +++ + I ++ TG I I QN IT A
Sbjct: 63 NPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSAL 121
Query: 144 KAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKK 202
K + + +E F T L+VNIT H L PKH L+D+EK++LLK+Y ++E QLPR+ +
Sbjct: 122 KLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRM 181
Query: 203 DAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 182 DPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|255085448|ref|XP_002505155.1| predicted protein [Micromonas sp. RCC299]
gi|226520424|gb|ACO66413.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 117/204 (57%), Gaps = 5/204 (2%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDP 95
S R + R+TV +ML RGY VA +E++ F +G+DP D L + + DP
Sbjct: 2 SEKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDP 61
Query: 96 SKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ---FK 152
++ I V F V V I+ ++ + + + I+++Q +T A +++ Q F
Sbjct: 62 TQHIFVFFPDEEKVGVKTIKEYAKRMKD-EQVNRAIIVVQQSLTPFARQSLLECQAQKFY 120
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E FQ +LLVNIT HVL P+H +L+D++K LL +Y ++E QLPR+ D +A+Y+G+
Sbjct: 121 IEQFQEAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQLPRIQMHDPVARYFGMR 180
Query: 213 RGQVVKVTYSGEITESHVTYR-CV 235
RGQVV++ E +VTYR CV
Sbjct: 181 RGQVVRIIRPSETAGRYVTYRLCV 204
>gi|449502080|ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 125/203 (61%), Gaps = 13/203 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + R+TV +ML+DRGY V EI+++ + F+ YG++ + + I+ S ++D S ++
Sbjct: 10 RLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSDQVY 69
Query: 101 VVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILILQN------QITSQATKAVGLFQFK 152
+ F P KV + +++ +++ + + ++++ QN S+AT F
Sbjct: 70 ICFF-PEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK----SFH 124
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E+FQ +LLVNI HVL P+HQ+L ++EK+ LL++Y+++E QLPR+ D +A+YYGL+
Sbjct: 125 LEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLK 184
Query: 213 RGQVVKVTYSGEITESHVTYRCV 235
RGQVVK+ E +VTYR V
Sbjct: 185 RGQVVKIIRPSETAGRYVTYRYV 207
>gi|297738790|emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 3/186 (1%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKV 111
MLKDRGY V EIN++ F + +G++ + L I+ + ++D S +I V F V V
Sbjct: 1 MLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQIYVFFPEEQKVGV 60
Query: 112 NVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHV 169
+++ +++ + + IL++Q +T A + +F +E+FQ +LLVNI +HV
Sbjct: 61 KTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHV 119
Query: 170 LKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESH 229
L P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK+ E +
Sbjct: 120 LVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRY 179
Query: 230 VTYRCV 235
+TYR V
Sbjct: 180 ITYRYV 185
>gi|237834761|ref|XP_002366678.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|211964342|gb|EEA99537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|221486036|gb|EEE24306.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
GT1]
gi|221503532|gb|EEE29223.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
VEG]
Length = 205
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP-DVDRLRISISHQSDPSKRI 99
R + +R+T +ML+DRGY V+ E N S DF + ++ + R+ + SH+ DP R+
Sbjct: 7 RLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVDPDNRV 66
Query: 100 LVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMF 156
+V F V IR + ++ R+ + IL+ QN +T+ A A+ + +E F
Sbjct: 67 IVYFADETKKTGVKPIRELTERMEERN-IQRAILVTQNVLTAFARDAISEAAPRHIIENF 125
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
++LLVNITKH L PKH LT+ EK+ LL +Y ++E QLPR+ D +A+Y+GL RGQV
Sbjct: 126 MESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQSADPVARYFGLSRGQV 185
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 186 VKIIRPSETAGRYVTYRLV 204
>gi|331224607|ref|XP_003324975.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303965|gb|EFP80556.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 122/204 (59%), Gaps = 8/204 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-LRISISH-QSD 94
R+ R + RT+ E+++DRGY V+ +EIN+S+ +F+A DP ++ R++ + +
Sbjct: 5 REVSRLHRVNRTIKELVRDRGYEVSDAEINVSLDEFKA---SDPISNKSTRLNFAAINPE 61
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFK 152
++ I V + V + +R IS I++ L ILI +T A K + QF
Sbjct: 62 TNQGIYVYYSDEKSVGIKTMRKFIS-ILDEKKLESGILIYSQAMTPSANKVIASMAQQFT 120
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E FQ +LLVNIT+H++ PKH+V+ +EK+ LL +Y +++ QLPR+ D +A+YYGL+
Sbjct: 121 LEAFQEAELLVNITRHIMVPKHEVMKPEEKKALLARYRLKDTQLPRIQLSDPVARYYGLK 180
Query: 213 RGQVVKVTYSGEITESHVTYRCVW 236
RGQVV++T E +V+YR
Sbjct: 181 RGQVVRITRPSETAGRYVSYRLAM 204
>gi|326501686|dbj|BAK02632.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 122/201 (60%), Gaps = 4/201 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RRTV++ML+DRGY V +++++++ +F YG D L I+ + + +P +
Sbjct: 7 ETSRLFRVRRTVMQMLRDRGYLVVDADVDMTMGEFVGRYGDPVRRDDLVINRAKKDNPDE 66
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV---GLFQFKVE 154
+I V F ++S + ++ + G IL++Q +TS A + + +V+
Sbjct: 67 QIYVFFPNEPKPGQKAVKSYVEKMTQENVRNG-ILVVQQALTSFARNNLLGNSPDKLQVQ 125
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
+FQ +LL+NI H L P+H +LT ++K+ LL+KY+++E QLPR+ D +A+YYG+ RG
Sbjct: 126 VFQEKELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQLPRIQVADPVARYYGMMRG 185
Query: 215 QVVKVTYSGEITESHVTYRCV 235
QVVK+T E +VTYR V
Sbjct: 186 QVVKITRPSETAGKYVTYRYV 206
>gi|255546411|ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 225
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 126/216 (58%), Gaps = 22/216 (10%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ--SD---P 95
R + RRTV++MLKDR Y V SEIN++ F + YG + + L I S + SD P
Sbjct: 10 RLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSKRDGSDSFYP 69
Query: 96 SK--------------RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
+K +I V F V V +++ +++ + + IL++Q +T
Sbjct: 70 TKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQSLTPF 128
Query: 142 ATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 199
A + +F +E+FQ ++LLVNI +HVL P+HQVLT++EK+ LL++Y+++E QLPR+
Sbjct: 129 ARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRI 188
Query: 200 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
D IA+YYGL+RGQVVK+ E +VTYR V
Sbjct: 189 QISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 224
>gi|324521545|gb|ADY47878.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Ascaris
suum]
Length = 211
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-----DRLRISISHQ 92
++ + + R+TV++M DRGY V E++ ++ +F+ +G P + L I ++H
Sbjct: 7 ETYKLWRVRKTVMQMCHDRGYLVTQEELDQTLDNFKETFGDKPSERKPGRNELTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ +T I+++Q +T A +A+ +
Sbjct: 67 DDPTDQMFVFFPEDAKIGIKTIKAICQQM-QEQAITRAIIVVQAGMTPSAKQAITDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+ ++EK +LL +Y +++ QLPR+ D +A+Y+G
Sbjct: 126 YTLEQFLEAELMVNITEHELVPEHVVMNNEEKTELLARYKLKDTQLPRIQMTDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRHV 210
>gi|405965226|gb|EKC30623.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Crassostrea gigas]
Length = 210
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 129/209 (61%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ +++ + + R+T++++ DRGY V E++ ++++F+ +G P + L +
Sbjct: 2 DDEQETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSERKPSRSDLIVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I++ Q + + +T I+++QN++T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPNVGIKTIKTY-CQRMQEENITRAIIVVQNRMTPSAKQSLTD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H+L P+H V+T +EK +LL +Y ++E QLPR+ + D +A
Sbjct: 121 MAPKYILEQFLEAELLINITEHMLVPEHVVMTPEEKTELLSRYKLKESQLPRIQQGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ + E +V+YR V
Sbjct: 181 RYFGLKRGQVVKIIRNSETAGRYVSYRLV 209
>gi|367013608|ref|XP_003681304.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
gi|359748964|emb|CCE92093.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
Length = 215
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 119/210 (56%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RT+ EM+KDRGY +A EI LS++DF+ Y D R +S QS+
Sbjct: 5 NERNISRLWRTFRTMKEMVKDRGYFIAQEEIELSLEDFKVKYC-DSMGRPQRKMMSFQSN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESITKFPNLGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+++EK++LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ + E + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRNSETAGRYASYR 212
>gi|406605852|emb|CCH42738.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 215
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 116/204 (56%), Gaps = 13/204 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + + RTV EM DRGY +A EI +++++FR+ Y D R +S Q+ P+ L
Sbjct: 11 RLWRAFRTVKEMALDRGYFIATEEITMNLEEFRSKYC-DAMGRPQRKLMSFQASPTSESL 69
Query: 101 ----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
V FC V + +++ + I ++ G I I QN IT A K +
Sbjct: 70 GQFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFSVG-IFIYQNGITPSANKLIPTVA 128
Query: 151 FKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
V E FQ +DL+VNIT H L PKH VL+D EK++LL++Y ++E QLPR+ ++D +A+Y
Sbjct: 129 PAVIETFQESDLIVNITHHELVPKHIVLSDDEKKELLERYRLKESQLPRIQREDPVARYL 188
Query: 210 GLERGQVVKVTYSGEITESHVTYR 233
GL RGQVVK+ E + + +YR
Sbjct: 189 GLRRGQVVKIIRRSETSGRYASYR 212
>gi|389742519|gb|EIM83705.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 5/194 (2%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRILVVF 103
RT+ E++KDRGY VA EI++ + F++ Y G D ++L + + + + I V F
Sbjct: 17 RTIHELVKDRGYQVADDEIHMDLTTFKSHYANSGGSVDRNQLNFFTNLRVNVEEHIFVFF 76
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLFQFKVEMFQITDLL 162
V V +R ++ QI+ + I+I +T A K V + +FKVE F DLL
Sbjct: 77 SDEKSVGVKTMRKLL-QIMTEKNIRRGIIIFPGIMTPAARKVIVSMAEFKVEEFSEADLL 135
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNIT H L P+H VLT +EK+ LL++Y ++E QLPR+ D IA+YYGL R QVVK+T
Sbjct: 136 VNITHHKLVPRHDVLTTEEKKMLLERYRLKETQLPRIQLADPIARYYGLRRSQVVKITRP 195
Query: 223 GEITESHVTYRCVW 236
E + + +YR +
Sbjct: 196 SETSGRYASYRICF 209
>gi|170098869|ref|XP_001880653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644178|gb|EDR08428.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 208
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 113/194 (58%), Gaps = 4/194 (2%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP---DVDRLRISISHQSDPSKRILVVF 103
RT+ E++KDRG+ V+ EI++ +Q FR++Y + D ++L + +++ + +I V F
Sbjct: 15 RTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRTNSTDQIFVFF 74
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKVEMFQITDLL 162
V V +R ++ + + G+I+ N S V + Q +++E F DLL
Sbjct: 75 SEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLL 134
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNI H L P+H VL+ EK+ LL+KY ++E QLPR+ D +A+YYGL RGQVVK+T
Sbjct: 135 VNIVHHTLVPRHDVLSPDEKKTLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITRP 194
Query: 223 GEITESHVTYRCVW 236
E + + +YR +
Sbjct: 195 SETSGRYASYRICF 208
>gi|145346274|ref|XP_001417617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577844|gb|ABO95910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + R+T+ +ML RGY V+ E+ + F +G++P + L I + DPS+ I
Sbjct: 8 RLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDDPSENIF 67
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ---FKVEMFQ 157
V F V V I+ + ++ + + +I++ Q +T A +++ Q F +E FQ
Sbjct: 68 VFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVV-QASLTPFAKQSLLECQTQKFYIEQFQ 126
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
T+LLVNI HVL P+H +L+D +K LL +Y +++ QLPR+ D IA+YYG+ RGQVV
Sbjct: 127 ETELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQLPRIQMHDPIARYYGMRRGQVV 186
Query: 218 KVTYSGEITESHVTYR-CV 235
++ E +VTYR CV
Sbjct: 187 RIIRPSETAGRYVTYRLCV 205
>gi|328865416|gb|EGG13802.1| RapGAP/RanGAP domain-containing protein [Dictyostelium
fasciculatum]
Length = 1144
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 9/202 (4%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQSDPSKRI 99
R Y R+T+L+ML DRGY + SE+ L+ +DF+ + + + L S + + D + RI
Sbjct: 6 RLYHIRKTILQMLSDRGYMITNSELELTKEDFKKDFTAHNNSREHLNSSYNKKDDAADRI 65
Query: 100 LVVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF----QFKV 153
F P VKV V IR + Q+ I+I+Q+ +T+ A +A+ F + +
Sbjct: 66 FTFF--PADVKVGVTPIRKFVDQMKGPHGGNRAIIIVQSNLTAFAKQALSEFSQAKKIVL 123
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F +LLVNIT H L PKH +LT +EK++LL +Y ++E QLPR+ D +A+Y+GL R
Sbjct: 124 EQFNEAELLVNITHHQLVPKHILLTKEEKKELLTRYKMKETQLPRVQMNDPVARYFGLAR 183
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
G VVK+ E ++TY +
Sbjct: 184 GDVVKIIRPSETAGRYITYSNI 205
>gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
Length = 205
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 121/197 (61%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y ++T+++ML+DRGY +A SE+ ++ Q F +G + + L + ++D S ++
Sbjct: 9 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLY 68
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
+ F V V ++ +++ + + IL++Q +T A + +F +E+FQ
Sbjct: 69 IFFPDEAKVGVKTMKMYTNRMKSENVFRA-ILVVQQNLTPFARTCISEISSKFHLEVFQE 127
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++LVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK
Sbjct: 128 AEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVK 187
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRYV 204
>gi|357164319|ref|XP_003580017.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 205
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 9/200 (4%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRTV+EML+DRGY V ++I LS+++F YG + L I+ + +P+++I
Sbjct: 9 RLFRIRRTVMEMLRDRGYLVVDADIELSMREFIDRYGDPVRREDLVINRVKKDNPNEQIY 68
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-----FKVEM 155
V F V +R ++ + G+I+ Q + + A + Q F +E+
Sbjct: 69 VFFPSEAKPGVKTVRGYADKMKQENVTNGIIVAEQ----ALSAFARNVLQDNSKSFFLEV 124
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
FQ +LLVNI H L P+H +LT ++K+ LL+KY+++E QLPR+ D IA+YYG++RGQ
Sbjct: 125 FQEGELLVNIKNHELVPEHVLLTHEQKKTLLEKYTVKETQLPRIQITDPIARYYGMKRGQ 184
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+T E +VTYR V
Sbjct: 185 VVKITRPSETAGKYVTYRYV 204
>gi|297830274|ref|XP_002883019.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
gi|297328859|gb|EFH59278.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 124/197 (62%), Gaps = 5/197 (2%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
+L +RT+++MLKDRGY++ SEI +++ +F YG++ L + ++D + ++ +
Sbjct: 12 FLVQRTLMQMLKDRGYSIEDSEITMTLGEFIEKYGENMKRKALVTLKAKKNDDNDKLYIF 71
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN--QITSQATKAVGLF--QFKVEMFQI 158
F V V ++ I+++ + + IL+ Q+ + + A ++G +F +E+FQ
Sbjct: 72 FPNKAKVGVADMKKYINRLKSENVFRA-ILVKQDIKEFSRHAQLSIGAAYPKFNIEVFQE 130
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+L+VN+ HV P+HQ LT +EK++ L++Y+++E QLPR+ D IA+Y+GL+RG+VVK
Sbjct: 131 KELIVNVNHHVFVPEHQALTTEEKQQFLERYTVKENQLPRIHVTDPIARYFGLKRGEVVK 190
Query: 219 VTYSGEITESHVTYRCV 235
+T E + +VTYR +
Sbjct: 191 ITRQSETSGRYVTYRSL 207
>gi|313226453|emb|CBY21598.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 115/195 (58%), Gaps = 8/195 (4%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRIL 100
R+T++ M DR Y VA E++ +++ F+A +G P + L I + H DP+ ++
Sbjct: 14 RKTIMAMCHDRKYLVAQRELDQTLEQFKAEFGSQPSQGQPSRKDLTIIVCHSDDPTDQMF 73
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F V + ++ I Q + + +T ++++Q +T A +A+ ++ +E F
Sbjct: 74 VFFPEDPKVTIKQVK-IYCQRMQEENITRALIVIQQSMTPSAKQALDDMAPKYTLESFYE 132
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+L++N+T+H L P H VLTD EK +LLK+Y ++E QLPR+ K D +A+Y+G++RGQV K
Sbjct: 133 QELMINLTEHELVPTHAVLTDDEKNELLKRYKLKESQLPRIQKSDPVARYFGVQRGQVFK 192
Query: 219 VTYSGEITESHVTYR 233
+ E +VTYR
Sbjct: 193 IIRRSETAGRYVTYR 207
>gi|388583908|gb|EIM24209.1| RPB5 subunit of DNA-directed RNA polymerase [Wallemia sebi CBS
633.66]
Length = 207
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 112/194 (57%), Gaps = 5/194 (2%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSDPSKRILVVFC 104
RT EM++DRG+AV+ EI + +F+ Y + +DR L S + +P +I V F
Sbjct: 15 RTAHEMVQDRGFAVSQQEIEIPYAEFKETYAGNGIIDRASLHFFASLEDNPDDQIFVFFA 74
Query: 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDLL 162
+ + +R ++ + R G ILI ++T A K + +K++ F ++L
Sbjct: 75 DEPSIGIKTMRKFLTVLEERKIGRG-ILIYPEKLTPAANKVIAEMAADYKLQAFTESELQ 133
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNIT H L P+H+VLT +EK+ LL+KY ++ QLPR+L D +A+Y+GLERGQVVK+
Sbjct: 134 VNITHHQLVPQHEVLTAEEKKLLLQKYRLKPTQLPRILTSDPVARYFGLERGQVVKIIRP 193
Query: 223 GEITESHVTYRCVW 236
E + + +YR +
Sbjct: 194 SETSGRYASYRICF 207
>gi|440302517|gb|ELP94824.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Entamoeba invadens IP1]
Length = 217
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 32 VDNGSRDSL-RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-VDRLRISI 89
++N D+L R Y +TVL+MLKDRGY + ++ +FR G D VDR +++I
Sbjct: 8 LENSLMDTLTRVYHVWKTVLDMLKDRGYVTNDLDHQTTLDEFRERVGVGADGVDRGKLTI 67
Query: 90 S--HQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG 147
+ I+V+F +K V RS ++ ++ I++ + Q++S + V
Sbjct: 68 KAVREGSADDGIIVLFAKDDKMKTEVFRSYAEEVQGQECKRA-IVVYRGQLSSVIVQFVN 126
Query: 148 LFQFKV--EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+ KV E+ +L+VN+TKHVL P+H LTD+EK+ +LKKY ++E QLPR+LK D I
Sbjct: 127 SSEQKVKWELLLEDELIVNVTKHVLVPEHIKLTDEEKQAVLKKYQVKESQLPRLLKSDPI 186
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
A+YYG ERG V+K+ E +VTYR V+
Sbjct: 187 AKYYGFERGDVIKIIRKSETAGRYVTYRAVF 217
>gi|125548794|gb|EAY94616.1| hypothetical protein OsI_16393 [Oryza sativa Indica Group]
gi|125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260 [Oryza sativa Japonica Group]
Length = 217
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 121/212 (57%), Gaps = 15/212 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RRTV++ML+DRGY V +I+L DF A +G D D L S + + +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEM 155
+I V F V IRS + ++ G IL++Q +++ A AV +F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRSYVERMKQESVFNG-ILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ------------LPRMLKKD 203
FQ +LLVNI H L P+H++LT ++K+ LL++Y+++E Q LPR+ D
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQILSLTQLVKCVNLPRIQITD 184
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
IA+YYG++RGQVVK+ + E +VTYR V
Sbjct: 185 PIARYYGMKRGQVVKIIRASETAGRYVTYRYV 216
>gi|198427419|ref|XP_002130595.1| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona
intestinalis]
Length = 210
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 122/207 (58%), Gaps = 12/207 (5%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TV+++ DRGY V E++ S+++F+ +G P R L I ++H
Sbjct: 6 ETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--- 149
DP+ ++ V F V V I++ Q + + + I+++Q +T A ++ LF
Sbjct: 66 DDPTDQMFVFFPEEPKVGVKTIKTY-CQRMQEENIQRAIIVVQQSMTPSAKQS--LFDMA 122
Query: 150 -QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQY 208
++ +E F +LL+NIT+H L P+H VLT +EK +LL +Y +++ QLPR+ D +A+Y
Sbjct: 123 PKYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQLPRIQAGDPVARY 182
Query: 209 YGLERGQVVKVTYSGEITESHVTYRCV 235
+GL+RGQVVK+ E +VTYR V
Sbjct: 183 FGLKRGQVVKIVRPSETAGRYVTYRLV 209
>gi|320582063|gb|EFW96281.1| RNA polymerase subunit ABC27 [Ogataea parapolymorpha DL-1]
Length = 214
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 123/213 (57%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R + R + + RTV EM++DRGY + EI++S+ FR + + ++ +S
Sbjct: 1 MDDIERTTSRLWRAYRTVKEMVRDRGYYITQEEIDISLDQFREKICDSMGMPQRKL-MSF 59
Query: 92 QSDPSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++ S+ + V FC V + +++ I +++ TG I I Q +T
Sbjct: 60 QANASQEAAEKYGDLGPLWVEFCDEPSVGITTMKNFCQHIADKNFATG-IFIYQQNMTPS 118
Query: 142 ATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
ATKA+ + + + E FQ D++VNIT H L PKH L+ +EK++LL +Y ++E QLPR+
Sbjct: 119 ATKAIAVAEPAIIETFQEADIIVNITHHELVPKHIRLSTEEKKELLARYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL RGQVVK+ E + + +YR
Sbjct: 179 REDPVARYLGLRRGQVVKIIRRSETSGRYASYR 211
>gi|452822190|gb|EME29212.1| DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria]
Length = 212
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 117/195 (60%), Gaps = 6/195 (3%)
Query: 46 RRTVLEMLKDRGYAV--ALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKRILVV 102
R+T+LEML+DRGY V S++ ++ ++F + Q + + L + HQ DPS +I V
Sbjct: 18 RKTILEMLRDRGYVVLETSSDLEMTREEFGSRLQQANYSRESLTLLKQHQHDPSDQIYVF 77
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN--QITSQATKAVGLFQFKVEMFQITD 160
F V V +R ++ +++++++ Q + V QFKVE+F +
Sbjct: 78 FPAEERVSVKTLRDYFVRMDQERVYKAILVVIKSLSPFAKQGIQKVA-SQFKVEVFLEME 136
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
LLVNIT H L PKH+VL+ + K++LLK+Y ++E QLPR+L D +A+Y GL++GQVVK+T
Sbjct: 137 LLVNITHHELVPKHEVLSTEGKKQLLKRYHLKESQLPRILMTDPVARYLGLQKGQVVKIT 196
Query: 221 YSGEITESHVTYRCV 235
E +VTYR V
Sbjct: 197 RPSETAGRYVTYRLV 211
>gi|156848515|ref|XP_001647139.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156117823|gb|EDO19281.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 215
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 122/214 (57%), Gaps = 14/214 (6%)
Query: 32 VDNGSRDSL-RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISIS 90
+D S S+ R + + RTV EM++DRGY +A EI+LS++DF+A Y D R +S
Sbjct: 1 MDQDSERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYC-DSMGRPQRKMMS 59
Query: 91 HQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITS 140
Q++P++ + V FC V V +++ + I ++ TG I + Q +T
Sbjct: 60 FQANPTEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTG-IFVYQTNVTP 118
Query: 141 QATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 199
A K V + +E F L+VNIT H L PKH L++ EK++LLKKY ++E QLPR+
Sbjct: 119 SAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQLPRI 178
Query: 200 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+ D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 179 QRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|303282333|ref|XP_003060458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457929|gb|EEH55227.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGP 106
+TV +ML RGY V E+ FR YG DP + L + + + DPS+ I V F
Sbjct: 15 KTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDDPSENIFVFFPEE 74
Query: 107 GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV---GLFQFKVEMFQITDLLV 163
V V I+ ++ + +I++ Q +T A +++ F +E FQ +LLV
Sbjct: 75 EKVGVKTIKEYAKRMKDESVFRAIIVV-QASLTPFAKQSLLECASQSFYIEQFQEMELLV 133
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NIT+HVL P+H +L+D EK LL +Y +++ QLPR+ D +A+YYG+ RGQVV++
Sbjct: 134 NITEHVLVPEHVLLSDAEKRTLLARYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPS 193
Query: 224 EITESHVTYR-CV 235
E +VTYR CV
Sbjct: 194 ETAGRYVTYRLCV 206
>gi|72109111|ref|XP_783584.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Strongylocentrotus purpuratus]
gi|390354452|ref|XP_003728337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 210
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
N ++ R + RRT++++ DRGY V E++ +++ F+ +G P +R L +
Sbjct: 2 NDEAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I++ Q + + +T I+ +Q ++T A ++G
Sbjct: 62 VAHNDDPTDQMFVFFPEEKKVGMKTIKAY-CQRMQEENITRAIITVQEKMTPSAKTSLGD 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H P+H V+T +EK +LL +Y +++ QLPR+ D +A
Sbjct: 121 MAPKYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQLPRIQVGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E +++YR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYISYRLV 209
>gi|297835232|ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 120/197 (60%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y ++T+++MLKDRGY +A SE+ ++ Q F +G + + L ++D S ++
Sbjct: 9 RLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRNDNSDQLY 68
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
+ F V V ++ +++ + + IL++Q +T A + +F +E+FQ
Sbjct: 69 IFFPDEAKVGVKTMKMYTNRMKSENVYRA-ILVVQQNLTPFARTCISEISSKFHLEVFQE 127
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++LVNI +HVL P+HQVLT +EK+ LL++Y+++E QLPR+ D IA+Y+GL+RGQVVK
Sbjct: 128 AEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVK 187
Query: 219 VTYSGEITESHVTYRCV 235
+ E +VTYR V
Sbjct: 188 IIRPSETAGRYVTYRYV 204
>gi|410081459|ref|XP_003958309.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
gi|372464897|emb|CCF59174.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
Length = 215
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 118/210 (56%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + +TV EM+KDRGY V EI+LS++DF+A Y D R +S Q++
Sbjct: 5 NERNIRRLWRTFKTVKEMVKDRGYFVNDEEIDLSLEDFKAKYS-DSMGRPQRKMMSFQAN 63
Query: 95 PSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P+ L V FC V V +++ + I ++ TG I I QN +T A K
Sbjct: 64 PNDEFLAKFPDLGSLWVEFCDEPSVGVKTMKNFVVHIQEKNYSTG-IFIYQNNVTPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E FQ L+VNIT H L PKH L+ +EK++LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFQEASLVVNITHHELVPKHIRLSLEEKKELLKRYRLKESQLPRIQRVD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETAGRYASYR 212
>gi|448112295|ref|XP_004202060.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359465049|emb|CCE88754.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + + +TV EM++DRGY + EI +S+ +FRA + + R+ +
Sbjct: 1 MDDNDRTVSRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++P+ L V FC V + +R+ I ++ TG I I Q IT
Sbjct: 60 QANPTAEALEKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQASITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
ATK + +E FQ +DL+VNIT H L PKH L+ EK++LL +Y ++E QLPR+
Sbjct: 119 ATKLIPTVSPASIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+ D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 179 RDDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|254578454|ref|XP_002495213.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
gi|238938103|emb|CAR26280.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
Length = 215
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + +TV EM+KDRGY +A EI L ++DF+A Y D R +S QS+
Sbjct: 5 NERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYC-DSMGRPQRKMMSFQSN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN +T A K
Sbjct: 64 PTEESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTG-IFVYQNNVTPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH ++ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|448114850|ref|XP_004202684.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359383552|emb|CCE79468.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + + +TV EM++DRGY + EI +S+ +FRA + + R+ +
Sbjct: 1 MDDNDRTVTRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRL-MCF 59
Query: 92 QSDPSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++P+ + V FC V + +R+ I ++ TG I I Q IT
Sbjct: 60 QANPTAEELEKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQASITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
ATK + +E FQ +DL+VNIT H L PKH L+ EK++LL +Y ++E QLPR+
Sbjct: 119 ATKLIPTVSPASIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+ D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 179 RDDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|402589264|gb|EJW83196.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 191
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 114/191 (59%), Gaps = 8/191 (4%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYG-----QDPDVDRLRISISHQSDPSKRILVVFCGP 106
M DRGY V E++ ++++F+ +G + P + L + ++H DP+ ++ V F
Sbjct: 1 MCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHNDDPTDQMFVFFPED 60
Query: 107 GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVN 164
+ + I++I Q+ +T I+++Q +T A +A+ ++ +E F +L+VN
Sbjct: 61 SKIGIKTIKAICQQM-QEQAITRAIIVVQTGMTPSAKQAIADMAPKYTLEQFLEAELMVN 119
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
IT+H L P+H V+T++EK +LL +Y +++ QLPR+ + D +A+Y+GL RGQVVK+ E
Sbjct: 120 ITEHELVPEHVVMTNEEKNELLGRYKLKDTQLPRIQQSDPVARYFGLRRGQVVKIIRPSE 179
Query: 225 ITESHVTYRCV 235
++TYR V
Sbjct: 180 TAGRYITYRLV 190
>gi|363753390|ref|XP_003646911.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890547|gb|AET40094.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
Length = 215
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 13/211 (6%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + EI+L++ DF+A Y D R +S QS
Sbjct: 4 HNERNVSRLWRAFRTVKEMVRDRGYFITQEEIDLALDDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
+P++ + + FC V + +++ + I ++ TG I I QN IT A
Sbjct: 63 NPTEESIVKSPQMGSVWIEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSAL 121
Query: 144 KAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKK 202
K + + +E F L+VNIT H L PKH L+D+EK +LLK+Y ++E QLPR+ +
Sbjct: 122 KLLPSVAPATIETFNEASLVVNITHHELVPKHIKLSDEEKRELLKRYRLKESQLPRIQRM 181
Query: 203 DAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 182 DPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|367046000|ref|XP_003653380.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
gi|347000642|gb|AEO67044.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
Length = 234
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 26/225 (11%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS---- 88
+++ R + + RT+ EM++DRGY +A E+ +S+ FRA Y D P+ +++ S
Sbjct: 11 AKEVTRLWRAWRTIHEMVQDRGYELAEEEVKISLDRFRAEYTNDDGSPNRAKMQFSARPS 70
Query: 89 -----------ISHQSDPSKR---ILVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLILI 133
+ DP+ I V FC G + ++V++ + + G IL+
Sbjct: 71 EAMIKKFTPPPTAANPDPAPECGTIWVEFCPDKGSIGISVMKKFVEHCAQNNFRAG-ILV 129
Query: 134 LQNQITSQATKAVGLF-QFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
+++QA K + + QF +E F DLLVNIT H L PKH +L+ +EK LLK+Y +
Sbjct: 130 TAVALSAQARKVMTVTSQFTLIECFLEEDLLVNITHHELVPKHVLLSREEKAALLKRYRL 189
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
+E QLPR+L KD IA+Y GL++GQVVK+ + E + +YR CV
Sbjct: 190 KETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 234
>gi|224001668|ref|XP_002290506.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
gi|220973928|gb|EED92258.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
Length = 226
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 8/219 (3%)
Query: 22 EPTESCLSGFVDNGSRDSLRYYLSR-----RTVLEMLKDRGYAVALSEINLSVQDFRAIY 76
+PTE + S SL SR +TV ML RGY V+ ++ DF +
Sbjct: 6 QPTEPPTANNTPQTSSSSLTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRF 65
Query: 77 GQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN 136
G+ P + L I + D + ++ V F V V I+ I++ + + ++ IL+L+
Sbjct: 66 GEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIK-ILTDRMKDENVSNAILVLRG 124
Query: 137 QITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 194
IT A +AV F++E F+ +LLV+IT+H L P+H VL+ EK++LLK+Y + E
Sbjct: 125 DITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRET 184
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
QLPR+ D +A+YYG++RGQVVK+ E +VTYR
Sbjct: 185 QLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223
>gi|408398400|gb|EKJ77531.1| hypothetical protein FPSE_02281 [Fusarium pseudograminearum CS3096]
Length = 234
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 27/228 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y +PD R +S
Sbjct: 9 DAKSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRNKLSFS 67
Query: 93 SDPSKRILVVF--------------CGPGIVK--------VNVIRSIISQIVNRDTLTGL 130
+ PS ++ F CGP ++ VN IR+ S +++ + TG
Sbjct: 68 ARPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVNQIRAFASYVISNNYKTG- 126
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I+I ++ A +++ + K+E F DLLVNIT H L PKH +L+ +EK LLK+
Sbjct: 127 IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKR 186
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
Y ++E QLPR+L+KD +A+Y GL+RG VVK+ + E + +YR CV
Sbjct: 187 YRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYRLCV 234
>gi|197098756|ref|NP_001126823.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Pongo
abelii]
gi|75054736|sp|Q5R587.1|RPAB1_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|55732763|emb|CAH93079.1| hypothetical protein [Pongo abelii]
Length = 210
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++FRA +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|307108804|gb|EFN57043.1| hypothetical protein CHLNCDRAFT_48698 [Chlorella variabilis]
Length = 203
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 118/198 (59%), Gaps = 9/198 (4%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRIL 100
RRT LEML+DRGY + ++ +S + F + +PD + +R I S DP+ +
Sbjct: 7 RRTCLEMLRDRGYQIDKEDVEMSGRKFVEKFATEPDPENVRRDAITILASKADDPTHQAF 66
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F + V I+++ ++ + + + IL+LQ+++T A + + +F +E+F
Sbjct: 67 VFFFEDPKLGVKAIKAVAVRMRD-ERVPRSILVLQDKLTPFAKQCIQEMSAKFAIEVFAE 125
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+L VNIT+H + P+HQVL+ +K LL++Y +++ QLPR+ +D +A+Y GLERGQVV+
Sbjct: 126 GELRVNITRHSMVPQHQVLSRLDKAALLERYKVKDTQLPRIQHQDPVARYLGLERGQVVR 185
Query: 219 VTYSGEITESHVTYR-CV 235
+ E +VTYR CV
Sbjct: 186 IVRGSETAGRYVTYRLCV 203
>gi|255728687|ref|XP_002549269.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240133585|gb|EER33141.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 214
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D R R + + +TV EM++DRGY ++ EI++++++FR+ D + R +
Sbjct: 1 MDETDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKIC-DSMGNPQRKQMCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q+ P+ L V FC V + +R+ I ++ TGL I QN IT
Sbjct: 60 QAQPTGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGL-FIYQNSITPS 118
Query: 142 ATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + V E+FQ +DL+VNIT H L PKH L+ EK +LL++Y ++E QLPR+
Sbjct: 119 ANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|255718861|ref|XP_002555711.1| KLTH0G15598p [Lachancea thermotolerans]
gi|238937095|emb|CAR25274.1| KLTH0G15598p [Lachancea thermotolerans CBS 6340]
Length = 215
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 118/208 (56%), Gaps = 13/208 (6%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + E++LS++DF+A Y D R +S QS+P
Sbjct: 7 RNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQSNPV 65
Query: 97 KRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ L V FC V + +++ + I ++ TG I + QN +T A K +
Sbjct: 66 EEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTG-IFVYQNGVTPSAMKLL 124
Query: 147 -GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+ +E F L+VNIT H L PKH L+D+EK++LL++Y ++E QLPR+ + D +
Sbjct: 125 PSVAPATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQLPRIQRMDPV 184
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYR 233
A Y GL+RG VVK+ E + + +YR
Sbjct: 185 ALYLGLKRGDVVKIIRKSETSGRYASYR 212
>gi|290878169|emb|CBK39228.1| Rpb5p [Saccharomyces cerevisiae EC1118]
Length = 215
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L++ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSNDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|294950415|ref|XP_002786618.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239900910|gb|EER18414.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 128/215 (59%), Gaps = 12/215 (5%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG--QDPDVDR-- 84
SG +D+ + +R + R+T+ E+L+DRGY VA +N + + F + Q+ R
Sbjct: 3 SGPIDDTT---IRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHD 59
Query: 85 LRISISHQSDPSKRILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
L I +S Q DPS +++V F V V IR++ ++ L+ IL++Q +T+ A
Sbjct: 60 LIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLALKM-EEQRLSRAILVVQQPLTAFAK 118
Query: 144 KAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLK 201
A+ Q ++E+F ++L+VNIT H L P+H+ LT +EK LL++Y ++E QLPR+
Sbjct: 119 TAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQLPRIQS 178
Query: 202 KDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
D +A+YYGL++GQV+K+ E +VTYR CV
Sbjct: 179 SDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
>gi|344302236|gb|EGW32541.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 214
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + S +TV EM++DRGY + EI++++ +FRA V + ++ +
Sbjct: 1 MDDNDRVISRLFRSFKTVKEMVRDRGYYITQEEIDMTLDEFRAKVCDSMGVPQRKL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q+ P+ L V FC V + +R+ I ++ TGL I QN IT
Sbjct: 60 QAQPTGESLEKFPDLGALWVEFCDEASVGIKTMRNFCIHITEKNFSTGL-FIYQNSITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + +E FQ DL+VNIT H L PKH L+ EK++LL++Y ++E QLPR+
Sbjct: 119 ANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSKDEKKELLERYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|209878710|ref|XP_002140796.1| DNA-directed RNA polymerase 2 [Cryptosporidium muris RN66]
gi|209556402|gb|EEA06447.1| DNA-directed RNA polymerase 2, putative [Cryptosporidium muris
RN66]
Length = 205
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R++ +RRT+ EML+DRGY V+ + + F+ + + R+ + SH+ D +KRI
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKRI 66
Query: 100 LVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMF 156
+ F V IR I+ ++ + + ILI QN +T+ A A+ + +E F
Sbjct: 67 ICYFADESKKTGVKPIRDIVEKM-DEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
+LLVNIT+H L PKH +L+D+EK +LL++Y ++E QLPR+ D +A+Y+GL + QV
Sbjct: 126 LENELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQHADPVARYFGLAKSQV 185
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 186 VKIIRPSETAGRYVTYRLV 204
>gi|355712729|gb|AES04446.1| polymerase II polypeptide E, 25kDa [Mustela putorius furo]
Length = 209
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVKV E ++TYR V
Sbjct: 181 RYFGIKRGQVVKVIRPSETAGRYITYRLV 209
>gi|238878328|gb|EEQ41966.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
albicans WO-1]
Length = 214
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + S +TV EM++DRGY ++ E+++++++FR+ + R +
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQ-RKQMCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q+ P+ L V FC V + +R+ I ++ TG I I QN +T
Sbjct: 60 QATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + +E+FQ DL+VNIT H L PKH L +EK++LL +Y ++E QLPR+
Sbjct: 119 ANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RG++VK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
>gi|365982519|ref|XP_003668093.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
gi|343766859|emb|CCD22850.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Length = 215
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 118/210 (56%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS+
Sbjct: 5 NERNISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQSN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + FC V V +++ + I ++ TG I + Q +T A K
Sbjct: 64 PTEESIAKFPDMGSLWAEFCDEESVGVKTMKNFVIHIQEKNFQTG-IFVYQTNVTPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+++EK++LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis TU502]
gi|54659611|gb|EAL38180.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis]
gi|323509171|dbj|BAJ77478.1| cgd2_980 [Cryptosporidium parvum]
gi|323509997|dbj|BAJ77891.1| cgd2_980 [Cryptosporidium parvum]
Length = 205
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R++ +RRT+ EML+DRGY V+ + F+ + + R+ + SH+ D +KRI
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66
Query: 100 LVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMF 156
+ F V IR I+ ++ + + ILI QN +T+ A A+ + +E F
Sbjct: 67 ICYFADESKKTGVKPIRDIVEKM-DEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
+LLVNITKH L PKH +L+D EK +LL +Y I+E QLPR+ D +A+Y+GL +GQV
Sbjct: 126 LENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQV 185
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 186 VKIIRPSETAGRYVTYRLV 204
>gi|12229927|sp|Q9P4B9.1|RPAB1_KLUMA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|9651716|gb|AAF91238.1|AF225206_4 RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 13/204 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR-- 98
R + + RTV EM++DRGY + EI+LS++DF+ Y D R +S QS+P++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYC-DSMGKPQRKMMSFQSNPTEESI 69
Query: 99 --------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
+ V FC V V +++ + I ++ TG I I Q+ IT A K +
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 151 FKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
V E F L+VNIT H L PKH L+D EK++LLK+Y ++E QLPR+ + D +A Y
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYL 188
Query: 210 GLERGQVVKVTYSGEITESHVTYR 233
GL+RG+V+K+ E + + +YR
Sbjct: 189 GLKRGEVIKIIRKSETSGRYASYR 212
>gi|412988339|emb|CCO17675.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bathycoccus prasinos]
Length = 205
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 114/194 (58%), Gaps = 6/194 (3%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TV +ML RGY V+ E+ F +G + + L I + + DPS+ I V F
Sbjct: 14 RKTVSKMLASRGYLVSQKELERDKDSFLEEFG-EVSREHLTIMVPKRDDPSENIFVFFPE 72
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ---FKVEMFQITDLL 162
V V +I+ ++ + + +I+I ++ +T A +++ Q F +E FQ T+LL
Sbjct: 73 EEKVGVKMIKDYAKRMREENVMRAIIVI-RSSLTPFAKQSLLEVQQQKFIIETFQETELL 131
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
VNIT H+L PKH +LTD+EK+ LL++Y + E QLPR+ D +A+YYG+ RGQVV++
Sbjct: 132 VNITDHILVPKHVLLTDEEKKTLLERYKVRETQLPRIQLHDPVARYYGMRRGQVVRIIRP 191
Query: 223 GEITESHVTYR-CV 235
E +VTYR CV
Sbjct: 192 SETAGRYVTYRLCV 205
>gi|307106700|gb|EFN54945.1| hypothetical protein CHLNCDRAFT_134695 [Chlorella variabilis]
Length = 190
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 114/193 (59%), Gaps = 10/193 (5%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+T LEML DRGY + E + + F YG PD+ R ++ DP+++I V F
Sbjct: 5 RKTCLEMLADRGYLITEEERDATRDQFTDKYG--PDIRREDLT----DDPTEQIFVFFPE 58
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V V I+ + ++ N + + +++ Q +T A + + ++ +E+FQ +LLV
Sbjct: 59 EAKVGVKTIKLLAERMRN-EGVQRAVMVTQANMTPFAKQCLSEMAPKYYIELFQEAELLV 117
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NITKH L P+H++LT +EK+ LL +Y +++ QLPR+ D +A+Y+G+ RGQVV++
Sbjct: 118 NITKHTLVPQHRILTREEKQTLLDRYKVKDTQLPRIQFSDPVARYFGMTRGQVVRIVRPS 177
Query: 224 EITESHVTYR-CV 235
E +VTYR CV
Sbjct: 178 ETAGRYVTYRLCV 190
>gi|355702921|gb|EHH29412.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
Length = 210
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|410342181|gb|JAA40037.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342183|gb|JAA40038.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342185|gb|JAA40039.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
Length = 217
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|6319630|ref|NP_009712.1| Rpb5p [Saccharomyces cerevisiae S288c]
gi|133338|sp|P20434.1|RPAB1_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=ABC27; AltName: Full=DNA-directed
RNA polymerases I, II, and III 27 kDa polypeptide
gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
gi|14278327|pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278338|pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278368|pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
gi|20150716|pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749620|pdb|1NIK|E Chain E, Wild Type Rna Polymerase Ii
gi|30749741|pdb|1NT9|E Chain E, Complete 12-Subunit Rna Polymerase Ii
gi|34810557|pdb|1PQV|E Chain E, Rna Polymerase Ii-Tfiis Complex
gi|46015418|pdb|1R5U|E Chain E, Rna Polymerase Ii Tfiib Complex
gi|46015783|pdb|1SFO|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965914|pdb|1R9S|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965926|pdb|1R9T|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966110|pdb|1TWA|E Chain E, Rna Polymerase Ii Complexed With Atp
gi|56966124|pdb|1TWC|E Chain E, Rna Polymerase Ii Complexed With Gtp
gi|56966134|pdb|1TWF|E Chain E, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966144|pdb|1TWG|E Chain E, Rna Polymerase Ii Complexed With Ctp
gi|56966154|pdb|1TWH|E Chain E, Rna Polymerase Ii Complexed With 2'datp
gi|58177168|pdb|1WCM|E Chain E, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679448|pdb|1Y1W|E Chain E, Complete Rna Polymerase Ii Elongation Complex
gi|61679465|pdb|1Y77|E Chain E, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679506|pdb|1Y1V|E Chain E, Refined Rna Polymerase Ii-tfiis Complex
gi|61679519|pdb|1Y1Y|E Chain E, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754247|pdb|2B63|E Chain E, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590858|pdb|2B8K|E Chain E, 12-Subunit Rna Polymerase Ii
gi|122920064|pdb|2E2H|E Chain E, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920079|pdb|2E2I|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920094|pdb|2E2J|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921033|pdb|2NVQ|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921069|pdb|2NVT|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921085|pdb|2NVX|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921100|pdb|2NVY|E Chain E, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921112|pdb|2NVZ|E Chain E, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104678|pdb|2JA5|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104693|pdb|2JA6|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104714|pdb|2JA7|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104726|pdb|2JA7|Q Chain Q, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104738|pdb|2JA8|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387187|pdb|2YU9|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877777|pdb|2R7Z|E Chain E, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172231|pdb|2R92|E Chain E, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172244|pdb|2R93|E Chain E, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613466|pdb|2VUM|E Chain E, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368737|pdb|3CQZ|E Chain E, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983594|pdb|3FKI|E Chain E, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781919|pdb|3GTG|E Chain E, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781932|pdb|3GTJ|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781945|pdb|3GTK|E Chain E, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781958|pdb|3GTL|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781971|pdb|3GTM|E Chain E, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781985|pdb|3GTO|E Chain E, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781998|pdb|3GTP|E Chain E, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782011|pdb|3GTQ|E Chain E, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104515|pdb|3H3V|F Chain F, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839445|pdb|3HOU|E Chain E, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839460|pdb|3HOU|Q Chain Q, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839475|pdb|3HOV|E Chain E, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839490|pdb|3HOW|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839505|pdb|3HOX|E Chain E, Complete Rna Polymerase Ii Elongation Complex V
gi|254839520|pdb|3HOY|E Chain E, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839535|pdb|3HOZ|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471950|pdb|3I4M|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471965|pdb|3I4N|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618769|pdb|3K1F|E Chain E, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914555|pdb|3K7A|E Chain E, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982478|pdb|3M3Y|E Chain E, Rna Polymerase Ii Elongation Complex C
gi|295982491|pdb|3M4O|E Chain E, Rna Polymerase Ii Elongation Complex B
gi|325053967|pdb|3PO2|E Chain E, Arrested Rna Polymerase Ii Elongation Complex
gi|325053982|pdb|3PO3|E Chain E, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634542|pdb|3QT1|E Chain E, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197459|pdb|3RZD|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197471|pdb|3RZO|E Chain E, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197483|pdb|3S14|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197495|pdb|3S15|E Chain E, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197507|pdb|3S16|E Chain E, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197519|pdb|3S17|E Chain E, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197531|pdb|3S1M|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197543|pdb|3S1N|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197555|pdb|3S1Q|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197567|pdb|3S1R|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197579|pdb|3S2D|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781200|pdb|3S2H|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251637|pdb|3J0K|E Chain E, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380840|pdb|4A3C|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546294|pdb|4A3B|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546312|pdb|4A3D|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546329|pdb|4A3E|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546346|pdb|4A3F|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546363|pdb|4A3J|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546380|pdb|4A3K|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546396|pdb|4A3L|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546413|pdb|4A3M|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977883|pdb|4A3G|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977898|pdb|4A3I|E Chain E, Rna Polymerase Ii Binary Complex With Dna
gi|380764983|pdb|4A93|E Chain E, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145450|pdb|4BBR|E Chain E, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145463|pdb|4BBS|E Chain E, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287822|emb|CAA37381.1| RNA polymerase RPB5 subunit [Saccharomyces cerevisiae]
gi|396754|emb|CAA50472.1| DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|536484|emb|CAA85113.1| RPB5 [Saccharomyces cerevisiae]
gi|151946543|gb|EDN64765.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae YJM789]
gi|190408693|gb|EDV11958.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|207347621|gb|EDZ73732.1| YBR154Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270199|gb|EEU05422.1| Rpb5p [Saccharomyces cerevisiae JAY291]
gi|285810484|tpg|DAA07269.1| TPA: Rpb5p [Saccharomyces cerevisiae S288c]
gi|323334603|gb|EGA75977.1| Rpb5p [Saccharomyces cerevisiae AWRI796]
gi|323338690|gb|EGA79906.1| Rpb5p [Saccharomyces cerevisiae Vin13]
gi|323356099|gb|EGA87904.1| Rpb5p [Saccharomyces cerevisiae VL3]
gi|349576528|dbj|GAA21699.1| K7_Rpb5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300997|gb|EIW12086.1| Rpb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|85105978|ref|XP_962076.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
gi|28923670|gb|EAA32840.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
Length = 234
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 30/229 (13%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQ 92
+ S++ R + + RTV EM++DRGY +A E+ +S++ F+A Y +D +R ++ S
Sbjct: 9 SASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFS-- 66
Query: 93 SDPSKRILVVFCGP-----------------------GIVKVNVIRSIISQIVNRDTLTG 129
+ PS+ ++ F P G + V+V++ ++ + G
Sbjct: 67 ARPSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAG 126
Query: 130 LILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
I I +++QA K + + +VE F DLLVNIT H L PKH +L+ +EK LLK
Sbjct: 127 -IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLK 185
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
+Y ++E QLPR+L KD IA+Y GL+RGQVVK+ E + +YR CV
Sbjct: 186 RYRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234
>gi|417408698|gb|JAA50889.1| Putative dna-directed rna polymerases i ii and iii subunit
rpabc1-like isoform 2, partial [Desmodus rotundus]
Length = 212
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 4 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 64 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 122
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 123 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 182
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 183 RYFGIKRGQVVKIIRPSETAGRYITYRLV 211
>gi|357482707|ref|XP_003611640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512975|gb|AES94598.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 229
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 32/222 (14%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
+ Y R+TV+EML+DR Y V E+N+S ++F+ YG+ + + L I+ + + +PS +I
Sbjct: 10 KLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKDNPSDQIY 69
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITD 160
V F V V+ R+ ++ N + + I++ Q +T+ A + +F +E+FQ +
Sbjct: 70 VFFPEDEKVGVHTFRTCTKRM-NSENVYRAIIVCQTSLTNMALSEIDS-KFHLEVFQEAE 127
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ------------------------- 195
LLVN+ H L P+HQVLTD EK+ LL++Y+++E Q
Sbjct: 128 LLVNVRYHELVPEHQVLTDNEKKTLLERYTVKETQNEVSMKDFCLFPSLLVISNPSTLSP 187
Query: 196 -----LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTY 232
LPR+ +D +A YYG++RGQVVK+ E +VTY
Sbjct: 188 LRRHSLPRIQVRDPVAGYYGMKRGQVVKIIRPSETAGRYVTY 229
>gi|317574789|ref|NP_001187413.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
gi|308322947|gb|ADO28611.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
Length = 210
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 123/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + +R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKTRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|124249077|ref|NP_079830.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Mus
musculus]
gi|157819761|ref|NP_001103084.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rattus
norvegicus]
gi|54036414|sp|Q80UW8.1|RPAB1_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|182676546|sp|B0BNE2.1|RPAB1_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|28374319|gb|AAH45521.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|74194812|dbj|BAE25998.1| unnamed protein product [Mus musculus]
gi|74198334|dbj|BAE43245.1| unnamed protein product [Mus musculus]
gi|74205025|dbj|BAE20985.1| unnamed protein product [Mus musculus]
gi|74208142|dbj|BAE26292.1| unnamed protein product [Mus musculus]
gi|148699661|gb|EDL31608.1| mCG13422, isoform CRA_a [Mus musculus]
gi|149034612|gb|EDL89349.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034613|gb|EDL89350.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034614|gb|EDL89351.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|165971683|gb|AAI58788.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Rattus
norvegicus]
Length = 210
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|441656609|ref|XP_004093285.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1 [Nomascus leucogenys]
Length = 210
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQXGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEMTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|365766868|gb|EHN08357.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|241950235|ref|XP_002417840.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
gi|223641178|emb|CAX45555.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
Length = 214
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + S +TV EM++DRGY ++ E+++++++FR+ + R +
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQ-RKQMCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q+ P+ L V FC V + +R+ I ++ TG I I QN +T
Sbjct: 60 QATPTGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + +E+FQ DL+VNIT H L PKH L +EK++LL +Y ++E QLPR+
Sbjct: 119 ANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RG++VK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
>gi|14589951|ref|NP_002686.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo
sapiens]
gi|149761124|ref|XP_001496313.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Equus caballus]
gi|301776310|ref|XP_002923555.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Ailuropoda melanoleuca]
gi|301776312|ref|XP_002923556.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Ailuropoda melanoleuca]
gi|335282254|ref|XP_003354010.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Sus scrofa]
gi|335282256|ref|XP_003354011.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Sus scrofa]
gi|348550374|ref|XP_003461007.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cavia porcellus]
gi|395831291|ref|XP_003788737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Otolemur garnettii]
gi|402903526|ref|XP_003914616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Papio anubis]
gi|403308121|ref|XP_003944520.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403308123|ref|XP_003944521.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Saimiri boliviensis boliviensis]
gi|403308125|ref|XP_003944522.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Saimiri boliviensis boliviensis]
gi|403308127|ref|XP_003944523.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Saimiri boliviensis boliviensis]
gi|426229485|ref|XP_004008821.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Ovis aries]
gi|426229487|ref|XP_004008822.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Ovis aries]
gi|426386425|ref|XP_004059685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Gorilla gorilla gorilla]
gi|426386427|ref|XP_004059686.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Gorilla gorilla gorilla]
gi|426386429|ref|XP_004059687.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Gorilla gorilla gorilla]
gi|426386431|ref|XP_004059688.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Gorilla gorilla gorilla]
gi|678549|gb|AAA62401.1| RNA polymerase II 23kD subunit [Homo sapiens]
gi|13325244|gb|AAH04441.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
gi|119589954|gb|EAW69548.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|119589955|gb|EAW69549.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|189069173|dbj|BAG35511.1| unnamed protein product [Homo sapiens]
gi|208967082|dbj|BAG73555.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|296485369|tpg|DAA27484.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bos taurus]
gi|312152670|gb|ADQ32847.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|355755269|gb|EHH59016.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
fascicularis]
gi|387542622|gb|AFJ71938.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
gi|410264992|gb|JAA20462.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410264994|gb|JAA20463.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299730|gb|JAA28465.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299732|gb|JAA28466.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|440910422|gb|ELR60220.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
grunniens mutus]
Length = 210
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|57525846|ref|NP_001003564.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Danio
rerio]
gi|50417194|gb|AAH77151.1| Polymerase (RNA) II (DNA directed) polypeptide E [Danio rerio]
Length = 210
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +FR+ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|66358302|ref|XP_626329.1| DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa II]
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa
II]
Length = 214
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R++ +RRT+ EML+DRGY V+ + F+ + + R+ + SH+ D +KRI
Sbjct: 16 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 75
Query: 100 LVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMF 156
+ F V IR I+ ++ + + ILI QN +T+ A A+ + +E F
Sbjct: 76 ICYFADESKKTGVKPIRDIVEKM-DEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESF 134
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
+LLVNITKH L PKH +L+D EK +LL +Y I+E QLPR+ D +A+Y+GL +GQV
Sbjct: 135 LENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQV 194
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 195 VKIIRPSETAGRYVTYRLV 213
>gi|114674426|ref|XP_512960.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan troglodytes]
Length = 230
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
Query: 45 SRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRI 99
SR+T++++ DRGY V E++ ++++F+A +G P R R + ++H DP+ ++
Sbjct: 33 SRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 92
Query: 100 LVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQ 157
V F V + I+ + Q + + +T ++++Q +T A +++ ++ +E F
Sbjct: 93 FVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFL 151
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
+LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVV
Sbjct: 152 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVV 211
Query: 218 KVTYSGEITESHVTYRCV 235
K+ E ++TYR V
Sbjct: 212 KIIRPSETAGRYITYRLV 229
>gi|50311991|ref|XP_456027.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036341|sp|Q6CJ62.1|RPAB1_KLULA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49645163|emb|CAG98735.1| KLLA0F21098p [Kluyveromyces lactis]
Length = 215
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 13/208 (6%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + EI+LS++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYC-DSMGKPQRKMMSFQSNPT 65
Query: 97 KR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + V FC V V +++ + I ++ TG I I Q+ IT A K +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKIL 124
Query: 147 GLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
V E F L+VNIT H L PKH L++ EK++LLK+Y ++E QLPR+ + D +
Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPV 184
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYR 233
A Y GL+RG+V+K+ E + + +YR
Sbjct: 185 ALYLGLKRGEVIKIIRKSETSGRYASYR 212
>gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLEQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G+ RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIRRGQVVKIIRPSETAGRYITYRLV 209
>gi|162606200|ref|XP_001713615.1| RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
gi|13794535|gb|AAK39910.1|AF165818_118 RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
Length = 214
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 122/214 (57%), Gaps = 13/214 (6%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALS--EINLSVQDFRAIYGQDPDVDR--LRISI 89
N ++ + RRTVL+M++DRGY V S ++N+S F Y ++ + R L I
Sbjct: 2 NDDKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKR 61
Query: 90 SHQSDPSKRILVVFCGPGIVKVNV----IRSIISQIVNRDTLTGLILILQNQITSQATKA 145
+P RIL+VF K+N+ IR +I N + + +++IL ++T A +A
Sbjct: 62 PRWDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKN-EGFSRVLMILNGKLTPHAKQA 120
Query: 146 VGLFQFK---VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKK 202
V +E F +L+VNIT H+L PKH++L+ E + LL++YSI+ LP++LK
Sbjct: 121 VSSINSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKILKN 180
Query: 203 DAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
D +A+Y GL+R ++VK+T E + +TYR C+
Sbjct: 181 DPVAKYLGLQRSEIVKITRVSETSGKFITYRICI 214
>gi|226371984|gb|ACO51617.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rana
catesbeiana]
Length = 210
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 120/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|350537103|ref|NP_001232745.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|118103219|ref|XP_418224.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Gallus gallus]
gi|126323555|ref|XP_001365263.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Monodelphis domestica]
gi|395513329|ref|XP_003760879.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Sarcophilus harrisii]
gi|197127122|gb|ACH43620.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|387018228|gb|AFJ51232.1| putative DNA directed RNA polymerase II polypeptide E [Crotalus
adamanteus]
Length = 210
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 116/208 (55%), Gaps = 6/208 (2%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ ++ + LI++ Q S V +
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDM 121
Query: 149 F-QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+
Sbjct: 122 APKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVAR 181
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235
Y+G++RGQVVK+ E ++TYR V
Sbjct: 182 YFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|254570507|ref|XP_002492363.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238032161|emb|CAY70112.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328353624|emb|CCA40022.1| DNA-directed RNA polymerase II subunit E [Komagataella pastoris CBS
7435]
Length = 214
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 121/213 (56%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+++ +R R + S RTV EM DRGY ++ E++ S+++FR+ D + R +S
Sbjct: 1 MEDNNRIISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKIC-DSMGNPQRKLMSF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
++P+ L V FC V + +R+ +I ++ TG I I QN IT
Sbjct: 60 LANPTPEALEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTG-IFIYQNNITPS 118
Query: 142 ATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + + E FQ +DL+VNIT H L PKH L+D EK +LL++Y ++E QLPR+
Sbjct: 119 ANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RGQVVK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211
>gi|46255774|gb|AAH34144.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
Length = 210
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGVKRGQVVKIIRPSETAGRYITYRLV 209
>gi|317137040|ref|XP_003190012.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus oryzae RIB40]
Length = 235
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 25/230 (10%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRL 85
SG VD R+ R + + RTV EML+DRGY V E+ +S+++F+ Y PD +++
Sbjct: 7 SGSVD-ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPLGYPDRNKM 65
Query: 86 RI-------------SISHQSDPSKR-----ILVVFCGPGI-VKVNVIRSIISQIVNRDT 126
++ +I ++P + I V FC V +R+ + +V+ +
Sbjct: 66 KVQARPTEAMQHKYTAIKTNANPDPQPDCGIIYVEFCPDSTGVGTKQVRAF-NHVVDENN 124
Query: 127 LTGLILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+ I Q I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK KL
Sbjct: 125 FHTGVFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKL 184
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
L +Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 185 LARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 234
>gi|366996969|ref|XP_003678247.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
gi|342304118|emb|CCC71905.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
Length = 215
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 116/208 (55%), Gaps = 13/208 (6%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + RTV EM++DRGY + E++LS++DF+ Y D R +S Q++P+
Sbjct: 7 RNISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKTKYC-DSMGRPQRKMMSFQANPT 65
Query: 97 KR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + FC V V ++S + I ++ TG I + Q +T A K V
Sbjct: 66 EESIAKFPSMGSLWAEFCDEPSVGVKTMKSFVIHIQEKNFQTG-IFVFQTNVTPSAMKLV 124
Query: 147 -GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
+ +E F L+VNIT H L PKH L+++EK +LLK+Y ++E QLPR+ + D +
Sbjct: 125 PSIPPATIETFHEASLVVNITHHELVPKHIRLSEEEKRELLKRYRLKESQLPRIQRADPV 184
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYR 233
A Y GL+RG+VVK+ E + + +YR
Sbjct: 185 ALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|432855568|ref|XP_004068251.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Oryzias latipes]
Length = 210
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 123/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|219112619|ref|XP_002178061.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410946|gb|EEC50875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 228
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 114/198 (57%), Gaps = 3/198 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RT+ ML RGY V + ++ F+ +G+ P + L I + D +
Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEM 155
++ + F V V I+ + + + ++++ I+IL+ IT A +AV F++E
Sbjct: 89 QLFIFFPEDEKVGVKPIK-VYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEH 147
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F+ ++LLV+ITKH L P HQVLT EK +LLK+Y +++ QLPR+ D +A+YYG+ RGQ
Sbjct: 148 FKESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQ 207
Query: 216 VVKVTYSGEITESHVTYR 233
VVK+ E +VTYR
Sbjct: 208 VVKIIRPSETAGRYVTYR 225
>gi|50290313|ref|XP_447588.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036350|sp|Q6FQA6.1|RPAB1_CANGA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49526898|emb|CAG60525.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR-- 98
R + + RTV EM++DRGY +A E++L+++DF+ Y D R +S Q++P++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYC-DSMGRAQRKMMSFQANPTEESM 69
Query: 99 --------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLF 149
+ V FC V V +++ + I + TG I I QN IT A K V +
Sbjct: 70 TKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIP 128
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
+E F L+VNIT H L PKH L ++EK +LLK+Y ++E QLPR+ + D +A Y
Sbjct: 129 PATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYL 188
Query: 210 GLERGQVVKVTYSGEITESHVTYR 233
GL+RG+VVK+ E + +YR
Sbjct: 189 GLKRGEVVKIIRKSETAGRYASYR 212
>gi|348504738|ref|XP_003439918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Oreochromis niloticus]
Length = 210
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 123/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F++ +G P R R +
Sbjct: 2 DDDEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|344230604|gb|EGV62489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Candida
tenuis ATCC 10573]
gi|344230605|gb|EGV62490.1| hypothetical protein CANTEDRAFT_114816 [Candida tenuis ATCC 10573]
Length = 214
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D R R + + +TV EM++DRGY ++ E+++S+ +FR ++ + ++ +
Sbjct: 1 MDEADRSMSRLWRTFKTVKEMVRDRGYYISQEELDMSLDEFRQKICDSMNMPQRKL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++P+ L V FC V + +R+ I R+ TG I I Q+ IT
Sbjct: 60 QANPTAESLEKFPELGTLWVEFCDEDSVGIKTMRNFCIHISERNFSTG-IFIYQSSITPS 118
Query: 142 ATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + + +E FQ +DL+VNIT H L PKH L+ EK++LL +Y ++E QLPR+
Sbjct: 119 ANKLIPTVAPASIETFQESDLVVNITHHELVPKHIKLSKGEKKELLDRYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|294944697|ref|XP_002784385.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239897419|gb|EER16181.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 128/215 (59%), Gaps = 12/215 (5%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG--QDPDVDR-- 84
SG +D+ + +R + R+T+ E+L+DRGY VA +N + + F + Q+ R
Sbjct: 3 SGPIDDVT---IRLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHD 59
Query: 85 LRISISHQSDPSKRILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
L I +S Q DPS +++V F V V IR++ ++ L+ IL++Q +T+ A
Sbjct: 60 LIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLALKM-EEQRLSRAILVVQQPLTAFAK 118
Query: 144 KAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLK 201
A+ Q ++E+F ++L+VNIT H L P+H+ LT +EK LL++Y ++E QLPR+
Sbjct: 119 TAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRIQS 178
Query: 202 KDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
D +A+YYGL++GQV+K+ E +VTYR CV
Sbjct: 179 SDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
>gi|401626842|gb|EJS44762.1| rpb5p [Saccharomyces arboricola H-6]
Length = 215
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + +TV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESITKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK++LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPASIETFNEAALVVNITHHELVPKHIRLSTDEKKELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|1680605|gb|AAC60556.1|S59774_1 RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 114/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVEWPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|336471719|gb|EGO59880.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2508]
gi|350292835|gb|EGZ74030.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 234
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 30/229 (13%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQ 92
+ S++ R + + RTV EM++DRGY ++ E+ +S++ F+A Y +D +R ++ S
Sbjct: 9 SASKEVSRLWRAWRTVHEMVQDRGYELSEDEVKISLERFKAEYTNEDGTPNRAKLQFS-- 66
Query: 93 SDPSKRILVVFCGP-----------------------GIVKVNVIRSIISQIVNRDTLTG 129
+ PS+ ++ F P G + V+V++ ++ + G
Sbjct: 67 ARPSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAG 126
Query: 130 LILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
I I +++QA K + + +VE F DLLVNIT H L PKH +L+ +EK LLK
Sbjct: 127 -IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLK 185
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
+Y ++E QLPR+L KD IA+Y GL+RGQVVK+ E + +YR CV
Sbjct: 186 RYRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234
>gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
(Silurana) tropicalis]
gi|148225220|ref|NP_001083516.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
laevis]
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis]
gi|89272916|emb|CAJ82278.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
gi|163916440|gb|AAI57232.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 114/208 (54%), Gaps = 6/208 (2%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ ++ + LI++ Q S V +
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDM 121
Query: 149 F-QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
++ +E F +LL+NIT+H L P+H V+T E +LL +Y + E QLPR+ D +A+
Sbjct: 122 APKYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQAGDPVAR 181
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235
Y+GL+RGQVVK+ E ++TYR V
Sbjct: 182 YFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|225706160|gb|ACO08926.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Osmerus mordax]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|425770508|gb|EKV08978.1| hypothetical protein PDIP_66930 [Penicillium digitatum Pd1]
gi|425771874|gb|EKV10306.1| hypothetical protein PDIG_57390 [Penicillium digitatum PHI26]
Length = 234
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 30/233 (12%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRL 85
S + R+ R + + RTV E+L DRGY V+ +E+ L ++DFRA Y PD ++
Sbjct: 5 SAYSMEAEREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKM 64
Query: 86 RI-------------SISHQSDPSKR-----ILVVFC----GPGIVKVNVIRSIISQIVN 123
+I ++ +++P+ + I V FC G G +V + +V+
Sbjct: 65 KIQARPTETMKLKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAF----NHLVD 120
Query: 124 RDTLTGLILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEK 182
+ I I Q I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK
Sbjct: 121 ENNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEK 180
Query: 183 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
KLL++Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 181 GKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
>gi|323349753|gb|EGA83968.1| Rpb5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 215
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 114/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I + TG I + QN IT A K
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKXFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|365761982|gb|EHN03600.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841351|gb|EJT43753.1| RPB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 215
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + +TV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESVSKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSTDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|410921186|ref|XP_003974064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Takifugu rubripes]
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|308321620|gb|ADO27961.1| DNA-directed RNA polymerases I, II and III subunit rpabc1
[Ictalurus furcatus]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 123/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VG 147
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A ++ V
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRIQEENITRAIIVVQMGMTPSAKQSPVD 120
Query: 148 LF-QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
+ ++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|340377807|ref|XP_003387420.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 210
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 119/204 (58%), Gaps = 8/204 (3%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-----VDRLRISISHQS 93
+ R + R+TV++M DR Y V E++ ++ F+ +G+ P+ + L I ++H
Sbjct: 7 TYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHND 66
Query: 94 DPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQF 151
DP+ ++ V F V + I+ ++ + ++ I+++Q +T A +A+ ++
Sbjct: 67 DPTDQMFVFFPEDPKVGIKTIKQYCGRM-QEENISRAIIVVQQGMTPSAKQALVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F +L++NIT+H L P+H V+T +EK +LL +Y ++E QLP++ D +A+YYGL
Sbjct: 126 ILEQFMEAELMINITEHELVPEHIVMTTEEKRELLARYKLKEHQLPKIQSGDPVARYYGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ E +VTYR V
Sbjct: 186 KRGQVVKIIRPSETAGRYVTYRLV 209
>gi|354545760|emb|CCE42488.1| hypothetical protein CPAR2_201310 [Candida parapsilosis]
Length = 214
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 19/216 (8%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ---DPDVDRLRIS 88
+D+ R R + + +TV EM+KDRGY ++ E++++++ FRA +P R
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELDMTLEQFRAKVCNTMGEPQ----RKL 56
Query: 89 ISHQSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI 138
+ Q+ P+ L V FC V + +R+ I ++ G I I QN I
Sbjct: 57 MCFQATPTAEQLDKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVG-IFIYQNGI 115
Query: 139 TSQATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLP 197
T A K + Q +E FQ DL+VNIT H L PKH L+ EK++LL++Y ++E QLP
Sbjct: 116 TPSANKLIPTVQPATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLP 175
Query: 198 RMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
R+ ++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 176 RIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|387915534|gb|AFK11376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Callorhinchus milii]
Length = 210
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRIS----- 88
+ ++ R + R+T++++ DRGY V E++ ++++FR +G P R S
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRNQFGDKPSEGHPRRSDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQV+K+ E ++TYR V
Sbjct: 181 RYFGLKRGQVIKIIRPSETAGRYITYRLV 209
>gi|50550027|ref|XP_502486.1| YALI0D06457p [Yarrowia lipolytica]
gi|54036340|sp|Q6CA26.1|RPAB1_YARLI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49648354|emb|CAG80674.1| YALI0D06457p [Yarrowia lipolytica CLIB122]
Length = 212
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
S D+ + + RT E++KDRGY + E+NLS F + DP ++ + +
Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMC-DPMGKPIKKKMCFMAS 60
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
PS I V FC V V +R+ I TG IL+ +N +T A +
Sbjct: 61 PSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANR 119
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
+ + ++ FQ TDLLVNITKHVL P H L+ EK+ LL++Y ++E QLPR+ ++D
Sbjct: 120 LIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQRED 179
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A+Y GL RGQ+VK+ E + + +YR
Sbjct: 180 PVARYLGLRRGQIVKIIRRSETSGRYASYR 209
>gi|367006695|ref|XP_003688078.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
gi|357526385|emb|CCE65644.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 112/198 (56%), Gaps = 13/198 (6%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL------ 100
RTV EM++DRGY ++ EI L ++DFRA Y D R +S Q++P++ L
Sbjct: 17 RTVKEMVRDRGYFISQDEIELPLEDFRAKYC-DYMGKPQRKMMSFQANPTEESLEKFPET 75
Query: 101 ----VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEM 155
V FC V V +++ + I ++ TG I + Q +T A K V + +E
Sbjct: 76 GSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTG-IFVYQTNVTPSAMKLVPSIPPATIET 134
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F L+VNIT H L PKH L+++EK+ LLK+Y ++E QLPR+ + D +A Y GL+RG+
Sbjct: 135 FHEASLVVNITHHELVPKHIRLSEEEKKDLLKRYRLKESQLPRIQRADPVALYLGLKRGE 194
Query: 216 VVKVTYSGEITESHVTYR 233
VVK+ E + + +YR
Sbjct: 195 VVKIIRKSETSGRYASYR 212
>gi|302894285|ref|XP_003046023.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726950|gb|EEU40310.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 234
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 27/228 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y +PD R +
Sbjct: 9 DARSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRAKLQFS 67
Query: 93 SDPSKRILVVF--------------CGPGIVK--------VNVIRSIISQIVNRDTLTGL 130
+ PS+ +L F CGP V+ V+ IR + ++ TG
Sbjct: 68 ARPSESMLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTG- 126
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I++ ++ A K++ + K+E F DLLVNIT H L PKH +L+ EK LLK+
Sbjct: 127 IMVTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKR 186
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
Y ++E QLPR+L++D +A+Y GL+RGQVVK+ + E + +YR CV
Sbjct: 187 YRLKETQLPRILQRDPVARYLGLKRGQVVKIIRNSETAGRYASYRLCV 234
>gi|255941598|ref|XP_002561568.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586191|emb|CAP93939.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 234
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 30/227 (13%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRI---- 87
R+ R + + RTV E+L DRGY V+ +E+ L ++DFRA Y PD +++I
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70
Query: 88 ---------SISHQSDPSKR-----ILVVFC----GPGIVKVNVIRSIISQIVNRDTLTG 129
++ +++P+ + I V FC G G +V + +V+ +
Sbjct: 71 TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAF----NHLVDENNFHT 126
Query: 130 LILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I I Q I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK KLL++
Sbjct: 127 GIFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLER 186
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 187 YRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
>gi|116242767|sp|P19388.4|RPAB1_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II 23
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit E; AltName: Full=RPB5 homolog;
AltName: Full=XAP4
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens]
gi|311349818|gb|ADP92094.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349820|gb|ADP92095.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349822|gb|ADP92096.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349824|gb|ADP92097.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349826|gb|ADP92098.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349828|gb|ADP92099.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349830|gb|ADP92100.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349832|gb|ADP92101.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349834|gb|ADP92102.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349836|gb|ADP92103.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349838|gb|ADP92104.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349840|gb|ADP92105.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349842|gb|ADP92106.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349844|gb|ADP92107.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349846|gb|ADP92108.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349848|gb|ADP92109.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349850|gb|ADP92110.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349852|gb|ADP92111.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349854|gb|ADP92112.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349856|gb|ADP92113.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349858|gb|ADP92114.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349860|gb|ADP92115.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349862|gb|ADP92116.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349864|gb|ADP92117.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349866|gb|ADP92118.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349868|gb|ADP92119.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349870|gb|ADP92120.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349872|gb|ADP92121.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349874|gb|ADP92122.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349876|gb|ADP92123.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349878|gb|ADP92124.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349880|gb|ADP92125.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349882|gb|ADP92126.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349884|gb|ADP92127.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349886|gb|ADP92128.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349888|gb|ADP92129.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349890|gb|ADP92130.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349892|gb|ADP92131.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349894|gb|ADP92132.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349896|gb|ADP92133.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
Length = 210
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|19114099|ref|NP_593187.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe 972h-]
gi|2500628|sp|Q09191.1|RPAB1_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPC24B
gi|256599719|pdb|3H0G|E Chain E, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599731|pdb|3H0G|Q Chain Q, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|1345439|dbj|BAA07843.1| RNA polymerase II 5th largest subunit [Schizosaccharomyces pombe]
gi|2465157|emb|CAB16886.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe]
gi|2708526|gb|AAB92515.1| Rpb5 [Schizosaccharomyces pombe]
Length = 210
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI-SHQSD 94
++ +R + + +T +++ DRGY V+ +E++L++ F+A++ G ++DR +S + S+
Sbjct: 6 KNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSN 65
Query: 95 PSKR--ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
S + I + F V + +R+ + + + + TG ILI N +T A K + Q
Sbjct: 66 DSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQ 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
F +E FQ +DL+VNIT H L PKH +L+ EK++LL +Y + E QLPR+ D +A+Y G
Sbjct: 125 FTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLG 184
Query: 211 LERGQVVKVTYSGEITESHVTYR 233
L+RG+VVK+ E + + +YR
Sbjct: 185 LKRGEVVKIVRRSETSGRYNSYR 207
>gi|160331077|ref|XP_001712246.1| rpabc5 [Hemiselmis andersenii]
gi|159765693|gb|ABW97921.1| rpabc5 [Hemiselmis andersenii]
Length = 216
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 122/208 (58%), Gaps = 12/208 (5%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSE--INLSVQDFRAIYGQDPDVDR--LRISISHQ 92
++ L + RRT+L+ML+DR Y V ++ + +S F + ++ V R L I+ S
Sbjct: 6 KEILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKW 65
Query: 93 SDPSKRILVVFCG----PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
+ + RILVVF + V IR +I +D I++L ++TS A +A+
Sbjct: 66 LEENMRILVVFIEGEKEKSAIGVKSIRGFCERI-KQDGFQNSIIVLHGKLTSHAKQAINS 124
Query: 149 FQF---KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
K+E F ++L+VNIT+H L PKH++++++E L K+YSI E QLPR+ K+D I
Sbjct: 125 INSLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQLPRINKRDPI 184
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYR 233
A+Y+GL++ Q++K+ S E + +VTYR
Sbjct: 185 ARYFGLQKNQIMKIIRSSETSGRYVTYR 212
>gi|403218074|emb|CCK72566.1| hypothetical protein KNAG_0K02020 [Kazachstania naganishii CBS
8797]
Length = 215
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RT+ EM+KDRGY + E+ LS++DF+ Y D R +S Q++
Sbjct: 5 NERNVRRLWRTFRTIKEMVKDRGYFITQEEVELSLEDFKVKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P + + V FC V V +++ + I ++ G I + QN +T A K
Sbjct: 64 PMEEAIAKFPDMGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQIG-IFVYQNNVTPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F T L+VNIT H L PKH L+ EK++LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFHETSLVVNITHHELVPKHIKLSTDEKKELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>gi|330040362|ref|XP_003239875.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
gi|327206800|gb|AEA38977.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
Length = 216
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALS--EINLSVQDFRAIYGQDPDVDRLRISI 89
+D + + + RRTVL++LKDR Y V S ++N+S DF Y ++ V R ++ I
Sbjct: 1 MDKENNEVFNLFRIRRTVLQLLKDRNYLVFNSKDDLNMSRIDFEFKYVKNYKVVREKMEI 60
Query: 90 SHQ--SDPSKRILVVFCGP----GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
+ K+ILVVF ++ V +IR ++ +D L+ L+++L ++TS A
Sbjct: 61 KRPLWNSLDKKILVVFIEKEKSGTMIGVKLIRKYCERM-KQDQLSNLVIVLHAKLTSHAK 119
Query: 144 KAVGLFQF---KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
+A+ K+E F ++L++NIT H L PKH++L+ +E + L K+Y I+E QLP++
Sbjct: 120 QAIDTINSSGDKIEYFNESELIINITHHTLVPKHEILSLEESKCLFKRYYIKETQLPKIQ 179
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTY-RCV 235
KKD I++Y+G+++ Q+V++ E + ++TY RC+
Sbjct: 180 KKDPISRYFGIQKNQIVRIIRPSENSGRYITYRRCI 215
>gi|90083116|dbj|BAE90640.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E + L +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTEPLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|339250892|ref|XP_003374431.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
gi|316969258|gb|EFV53386.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
Length = 211
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 117/206 (56%), Gaps = 8/206 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISH 91
R+ R + R +M +DRG+ V +E++ + +DF YG P + L +SH
Sbjct: 6 REIFRLWKIRHNAFQMCRDRGFLVTSNELDQNFEDFVRQYGDRPSEGKPARSDLSFLVSH 65
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-- 149
+ D ++ + V F V + I+++ ++ + ++ I+I+Q +T+ A +V
Sbjct: 66 EEDAAENLFVYFADEKKVGIKTIKNVCLRL-QSENMSRAIMIVQEPMTAIARHSVADLSP 124
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
++++E F +L+VNI +H L P+H +++ +EK++LL +Y I+E QLPR+ D IA+YY
Sbjct: 125 KYRLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQLPRIQSTDPIARYY 184
Query: 210 GLERGQVVKVTYSGEITESHVTYRCV 235
G+ RGQV K+ E +V+YR V
Sbjct: 185 GVVRGQVFKIIRPSETAGYYVSYRVV 210
>gi|326934422|ref|XP_003213289.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Meleagris gallopavo]
Length = 209
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F P V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVSFPEPK-VGIKTIK-MYCQRMQEENITRALIVVQQGMTPSAKQSLVD 119
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 120 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 179
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 180 RYFGIKRGQVVKIIRPSETAGRYITYRLV 208
>gi|198471708|ref|XP_002133816.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
gi|198146041|gb|EDY72443.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 119/207 (57%), Gaps = 8/207 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-----QDPDVDRLRIS 88
N + + + R+T+ EM DRGY V +E++ +V+ F ++G Q P L +
Sbjct: 2 NDEAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTML 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
+SH DP R+LV F V V I++ ++ + + IL++++ +T A +++
Sbjct: 62 LSHADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEG-EGIHRAILVVRDCLTPPAKQSIMA 120
Query: 149 FQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
+ +E F ++L +N+TKH L P+H VL++ EK++L + Y ++E Q+ RML D +A
Sbjct: 121 MAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQMMRMLSSDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYR 233
+YYGL+ GQVVK+ + E +++YR
Sbjct: 181 RYYGLKPGQVVKIVRASESAGKYISYR 207
>gi|336267790|ref|XP_003348660.1| hypothetical protein SMAC_01684 [Sordaria macrospora k-hell]
gi|380093918|emb|CCC08134.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 234
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 26/227 (11%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI- 89
+ S++ R + + RTV EM++DRGY +A E+ +S++ F+ Y + P+ +L+ S
Sbjct: 9 SASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKLEYTNEDGTPNRGKLQFSAR 68
Query: 90 ------------SHQSDPSKR-----ILVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLI 131
S+P+ I V FC G + V+V++ ++ + G I
Sbjct: 69 PSEAMIKKFTAPPTPSNPNPAPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAG-I 127
Query: 132 LILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189
I +++QA K + + +VE F DLLVNIT H L PKH +L+ +EK LLK+Y
Sbjct: 128 FITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRY 187
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
++E QLPR+L KD IA+Y GL+RGQVVK+ E + +YR CV
Sbjct: 188 RLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234
>gi|119589953|gb|EAW69547.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_a [Homo sapiens]
Length = 211
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 123/210 (58%), Gaps = 9/210 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS-IEEKQLPRMLKKDAI 205
++ +E F +LL+NIT+H L P+H V+T +E +LL +YS + E QLPR+ D +
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYSKLRENQLPRIQAGDPV 180
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCV 235
A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 ARYFGIKRGQVVKIIRPSETAGRYITYRLV 210
>gi|145230680|ref|XP_001389604.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus niger CBS 513.88]
gi|134055723|emb|CAK44096.1| unnamed protein product [Aspergillus niger]
gi|350638607|gb|EHA26963.1| hypothetical protein ASPNIDRAFT_205564 [Aspergillus niger ATCC
1015]
gi|358370671|dbj|GAA87281.1| RNA polymerase subunit [Aspergillus kawachii IFO 4308]
Length = 235
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 25/230 (10%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRL 85
+G VD R+ R + + RTV EML DRGY V E+ + + +F+ Y PD +++
Sbjct: 7 AGSVD-ADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKM 65
Query: 86 RIS-------------ISHQSDPSKR-----ILVVFCGPGI-VKVNVIRSIISQIVNRDT 126
+IS + +S+P+ + I V FC V +R+ + V+ +
Sbjct: 66 KISARPTEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTF-NHFVDENN 124
Query: 127 LTGLILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+ I Q I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ EK +L
Sbjct: 125 FHTGVFITQTPISPSAVRLLSSMPGRICEHFQEQDLLVNITRHELVPKHVLLSPDEKARL 184
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
L++Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 185 LERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 234
>gi|322706717|gb|EFY98297.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 232
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 27/228 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+N+S+ FR Y +PD R +
Sbjct: 7 DAKSKEVVRLWRAWRTVHEMVADREYELAEEEVNISLDRFRDEYC-NPDGSVNRSKLQFS 65
Query: 93 SDPSKRIL--------------VVFCGPGIVK--------VNVIRSIISQIVNRDTLTGL 130
+ PS +L V CGP V+ V IR ++ + TG
Sbjct: 66 ARPSDAMLKKNTPPATESNPDPVPDCGPVWVEFLTDKQFGVGQIRQFAKYTISNNYKTG- 124
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I++ ++ A K++ + K+E F DLLVNIT H L P+H +L+ EK LLK+
Sbjct: 125 IMVTHVPLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSRDEKSALLKR 184
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
Y ++E QLPR+L+KD +A+Y GL+RGQVVK+ E + +YR CV
Sbjct: 185 YRLKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYASYRLCV 232
>gi|46136465|ref|XP_389924.1| hypothetical protein FG09748.1 [Gibberella zeae PH-1]
Length = 253
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 30/230 (13%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD----VDRLRI 87
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y +PD ++ R
Sbjct: 8 TDAKSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSININYSRN 66
Query: 88 SISHQSDPSKRILVVF--------------CGPGIVK--------VNVIRSIISQIVNRD 125
+S + PS ++ F CGP ++ V+ IR+ S +++ +
Sbjct: 67 KLSFSARPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNN 126
Query: 126 TLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKE 183
TG I+I ++ A +++ + K+E F DLLVNIT H L PKH +L+ +EK
Sbjct: 127 YKTG-IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKI 185
Query: 184 KLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
LLK+Y ++E QLPR+L+KD +A+Y GL+RG VVK+ + E + +YR
Sbjct: 186 ALLKRYRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235
>gi|126275976|ref|XP_001386931.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
gi|126212800|gb|EAZ62908.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
Length = 213
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + S +TV EM++DRGY + E+++S+ +FRA + ++ + Q++P+ L
Sbjct: 9 RLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKL-MCFQANPTAESL 67
Query: 101 ----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
V FC V + +R+ I ++ TG I I QN IT A K +
Sbjct: 68 DKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQNSITPSANKLIPTVS 126
Query: 151 -FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
+E FQ DL+VNIT H L PKH L+ EK++LL +Y ++E QLPR+ ++D +A+Y
Sbjct: 127 PASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQLPRVQREDPVARYL 186
Query: 210 GLERGQVVKVTYSGEITESHVTYR 233
GL+RG+VVK+ E + + +YR
Sbjct: 187 GLKRGEVVKIIRRSETSGRYASYR 210
>gi|346469147|gb|AEO34418.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ ++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARNDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + +T I+++Q +T A +A+G +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTY-CQRMQEENITRAIIVVQTGMTPSAKQALGDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT +EK +LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEHFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|385301817|gb|EIF45980.1| dna-directed rna polymerases ii 24 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 194
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 113/193 (58%), Gaps = 13/193 (6%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL----------V 101
M+KDRGY + EI+L + FR + V + ++ +S Q+ P++ L V
Sbjct: 1 MVKDRGYYIPQEEIDLPLDQFREKFCDSMGVPQRKL-MSFQATPTQDALEKYGDLGPLWV 59
Query: 102 VFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKVEMFQITD 160
FC V + +++ + I +++ TG I I Q +T ATKA+ + + +E+FQ ++
Sbjct: 60 EFCDEPSVGIQTMKNFCAHIADKNFSTG-IFIYQQNMTPSATKAIAVAEPATIEIFQESE 118
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
++VNIT H L PKH L+++EK LLK+Y ++E QLPR+ +D +A+Y GL+RGQVVK+
Sbjct: 119 IVVNITHHELVPKHIRLSNEEKIDLLKRYRLKESQLPRIQSQDPVARYLGLKRGQVVKII 178
Query: 221 YSGEITESHVTYR 233
E + +YR
Sbjct: 179 RRSETAGRYASYR 191
>gi|323449166|gb|EGB05056.1| hypothetical protein AURANDRAFT_31430 [Aureococcus anophagefferens]
Length = 204
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 114/193 (59%), Gaps = 4/193 (2%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
RRT+L+MLK R Y V ++++ +S + F+ +G+ P L I H++D ++ +
Sbjct: 13 RRTLLKMLKKRNYVVDVAQLEMSSEAFQEQFGEQPKRTDLTILAEHETDAEDQVFIFLPD 72
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V V I+ +++ +++ IL+++ IT A A+ + +E F+ +LLV
Sbjct: 73 EEKVGVKTIKQY-CEMMKEASVSHAILVVKAGITPFAKTALQEMASMYLIEHFRDNELLV 131
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+IT+H L P HQ L+ ++K LLK+Y ++E QLPR+ K D +A+YYGL+ G+V+K+
Sbjct: 132 DITEHKLVPAHQPLSPEDKAALLKRYKLKESQLPRIQKNDPVARYYGLKVGEVIKIVRPS 191
Query: 224 EITESHVTYR-CV 235
E +VTYR C+
Sbjct: 192 ETAGRYVTYRVCI 204
>gi|448525471|ref|XP_003869121.1| Rpb5 protein [Candida orthopsilosis Co 90-125]
gi|380353474|emb|CCG22984.1| Rpb5 protein [Candida orthopsilosis]
Length = 214
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+D+ R R + + +TV EM+KDRGY ++ E+ ++++ FR+ + ++ +
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELEMTLEQFRSKVCNSMGEPQRKL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q+ P+ L V FC V + +R+ I ++ G I I QN IT
Sbjct: 60 QATPNAEQLEKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVG-IFIYQNGITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + Q +E FQ DL+VNIT H L PKH L+ EK++LL++Y ++E QLPR+
Sbjct: 119 ANKLIPTVQPATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D +A+Y GL+RG+VVK+ E + + +YR
Sbjct: 179 REDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|209733016|gb|ACI67377.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|225715082|gb|ACO13387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDDEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T +++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ + D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQQGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|84000159|ref|NP_001033182.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
taurus]
gi|109893821|sp|Q2T9T3.1|RPAB1_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|83405854|gb|AAI11281.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Bos
taurus]
Length = 210
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V ++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>gi|229366774|gb|ACQ58367.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anoplopoma fimbria]
Length = 210
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V++ +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|321475403|gb|EFX86366.1| hypothetical protein DAPPUDRAFT_308488 [Daphnia pulex]
Length = 210
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+T++++ DRGY V E++ +++ F+ +G P + L + ++H
Sbjct: 6 ETYRMWRVRKTIMQLCHDRGYLVTQDELDQTLEQFKIQFGDKPSERKPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + +T I+++Q+ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTY-CQRMQEENITRAIIVVQSGMTPSAKQSLTDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT +EK++LL +Y ++E QL R+ D +A+Y+G
Sbjct: 125 YILEYFTESELLINITEHELVPEHVVLTPEEKQELLCRYKLKENQLMRIQMGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIVRPSETAGRYISYRLV 209
>gi|50426767|ref|XP_461981.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
gi|54036338|sp|Q6BIJ0.1|RPAB1_DEBHA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49657651|emb|CAG90451.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
Length = 214
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+++ R R + S +TV EM++DRGY + EI++S+ +FR+ +V + ++ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++P+ L V FC V + +R+ I ++ TG I I Q+ IT
Sbjct: 60 QANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + +E FQ DL+VNIT H L PKH L EK++LL++Y ++E QLPR+
Sbjct: 119 ANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D + +Y GL+RG+VVK+ E + + +YR
Sbjct: 179 REDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
>gi|307214976|gb|EFN89821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Harpegnathos saltator]
Length = 210
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ YG P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTIEQFKEHYGDKPSEKRPARSELIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTY-CQRMQEEKIHRAIIVVQQGMTPSAKQSLTDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|209732756|gb|ACI67247.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|303659190|gb|ADM15954.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 210
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T +++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|291240531|ref|XP_002740164.1| PREDICTED: DNA directed RNA polymerase II polypeptide E-like
[Saccoglossus kowalevskii]
Length = 210
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQ 92
++ + + R+T++++ DRGY V E++ ++ F++ +G P R R + ++H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQEELDQTLDQFKSQFGDKPSEGRPRRNDLTVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ + F + + I++ Q + + +T +++Q +T A +++ +
Sbjct: 66 DDPTDQMFIFFPEEPKIGIKTIKTY-CQKMQEENITRATIVVQAGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +LL+N+T+H L P+H V+T +EK +LL +Y ++E QLPR+ + D +A+Y+G
Sbjct: 125 YILEQFLEAELLINLTEHELVPEHVVMTPEEKAELLARYRLKEHQLPRIQQGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGKYISYRLV 209
>gi|292611220|ref|XP_002661023.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Danio rerio]
Length = 210
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+TV+++ DRGY V E++ ++ +F+ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEELKVGIKTIK-MYCQRMQEENITRAVIVVQTGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKETQLPRIQCSDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|298712690|emb|CBJ48715.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDP 95
S + + Y R+T ++ML+ RGY V ++++ + F YG +P+ L + + DP
Sbjct: 9 SDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDP 68
Query: 96 SKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF----QF 151
+I V F V V IRS +++ + +I+I + IT A A+ +
Sbjct: 69 MDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVI-KGGITPFARSAIQELCAQREV 127
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+VE F+ +L+++IT+H L P+HQVL+ ++K +LLK+Y +++ QLPR+ D +A+++G+
Sbjct: 128 QVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGM 187
Query: 212 ERGQVVKVTYSGEITESHVTYR-CV 235
++GQV K+T E +VTYR C+
Sbjct: 188 QKGQVCKITRPSETAGRYVTYRLCI 212
>gi|242247587|ref|NP_001156054.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
[Acyrthosiphon pisum]
gi|239793387|dbj|BAH72818.1| ACYPI000388 [Acyrthosiphon pisum]
Length = 210
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
+S + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ Q + +T+T I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTY-CQRMQEETITRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT EK++LL +Y ++E QL R+ D +++Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQLMRIQVGDPVSRYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ + E +++YR V
Sbjct: 185 LKRGQVVKIVRNSETAGRYISYRLV 209
>gi|119495104|ref|XP_001264345.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
gi|119412507|gb|EAW22448.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
Length = 234
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 24/224 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS--- 88
R+ R + + RTV EML DRGY V EI + + +FR Y PD +++IS
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70
Query: 89 ----------ISHQSDPSKR-----ILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLIL 132
+ ++P + I V FC V +R+ + V+ + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAF-NHFVDENNFHTGVF 129
Query: 133 ILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
I Q I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK+ LL++Y +
Sbjct: 130 ITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 190 KESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
>gi|358393858|gb|EHK43259.1| hypothetical protein TRIATDRAFT_301149 [Trichoderma atroviride IMI
206040]
Length = 233
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 27/228 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+++S++ FR Y PD R +
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVSISLERFRDEYCH-PDGSVNRAKLQFS 66
Query: 93 SDPSKRIL--------------VVFCGPGIVK--------VNVIRSIISQIVNRDTLTGL 130
+ PS +L V CGP V+ V+ IR+ + + TG
Sbjct: 67 ARPSDSMLRKNTPPATASNPDPVPDCGPIWVEFLTDKQFGVSQIRNFAKYTITNNYKTG- 125
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I++ ++ A K++ + K+E F DLLVNIT H L P+H +L+ +EK LLK+
Sbjct: 126 IMVTPVALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKR 185
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
Y ++E QLPR+L+KD +A+Y GL+RGQVVK+ E + +YR CV
Sbjct: 186 YRLKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYASYRLCV 233
>gi|407928431|gb|EKG21288.1| RNA polymerase subunit H/Rpb5 [Macrophomina phaseolina MS6]
Length = 227
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 19/219 (8%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-VDRLRISIS-HQ 92
R++ R + + RT EM+ DRGY ++ SE +++ +FRA +G VDR +++ S +
Sbjct: 9 AEREASRLWRAWRTAHEMIADRGYIMSESEYKITLDEFRAKFGDSSGYVDRKQLAFSANP 68
Query: 93 SDPSKR---------------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQ 137
SD K+ I V F G + V +R+ +N + I I
Sbjct: 69 SDEMKQKHFNPRKPKESEVGNIWVEFNGDQNIGVKQLRNF-GHTLNEHNFSSGIFITAVP 127
Query: 138 ITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+T A K + L +E+F DLLVNIT+H L PKH +L+ +EK LL +Y ++E QL
Sbjct: 128 VTGAAQKIIPSLHPLIMEIFMEQDLLVNITQHELVPKHVLLSAEEKAALLARYRLKESQL 187
Query: 197 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
PR+ + D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 188 PRIQQGDPVARYLGLKRGQVVKIIRKSETAGRYASYRWV 226
>gi|403332978|gb|EJY65550.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Oxytricha
trifallax]
Length = 215
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 124/209 (59%), Gaps = 18/209 (8%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS------ 96
Y R+TVL+MLKDRGY V+ ++ ++++F+A + D L ++ Q DP+
Sbjct: 10 YRVRKTVLQMLKDRGYIVSDKKLKQTIEEFKATFNNTRDSLNLIVTKRQQVDPNDPNSQV 69
Query: 97 ------KRILVVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILIL-QNQITSQATKAVG 147
++ L+VF P + K+N+ ++ I +++ + +++I QI+ +
Sbjct: 70 AQNSEEQQKLIVF-FPDVEKLNMAALKQIAIKMLEVNCFNAIVIIKGATQISRRELDE-- 126
Query: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
L ++E F +LLVNIT+H L P+H+VL+D+ K +LLKKY +++ QLP++ D IA+
Sbjct: 127 LKPCEIECFLQQELLVNITEHELVPRHEVLSDKAKHELLKKYRVKDSQLPKIQVDDPIAR 186
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCVW 236
YYG++RGQV+K+ + E +VTYR +
Sbjct: 187 YYGVKRGQVMKIVRASETAGRYVTYRLAY 215
>gi|196010385|ref|XP_002115057.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582440|gb|EDV22513.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 210
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRA-IYGQDPDVDRLR----ISISHQ 92
++ + + R+TV++M DRGY V+ E++ + F Y + + ++R + + H
Sbjct: 6 EAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVHHI 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP++++ V F V +N I+ Q + R+ + I+I+Q+ +T A +++ +
Sbjct: 66 DDPTEQLFVFFPDEPKVGINTIKKY-CQRMQRENINRAIIIIQSGMTPTAKQSLIDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++L++NIT+H L PKH V++ +EK +LL +Y ++E QLPR+ D +A+YYG
Sbjct: 125 YTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQLPRIQVGDPVARYYG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQ V++ E ++TYR V
Sbjct: 185 LKRGQFVRIIRPSETAGRYITYRLV 209
>gi|71029810|ref|XP_764548.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68351502|gb|EAN32265.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 205
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RRT EML+DRGY + + E + +F+A Y V + ++ Q S+ L
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTASENKL 66
Query: 101 VVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMF 156
+V+ K V IR + ++ + D + IL+ QN +T A A+ K +E F
Sbjct: 67 LVYFADEKKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTPFAKDAIMEAYPKNIIENF 125
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
T+LLVNITKH L PKH LT +EK+ LL+KY ++E Q+PR+ D +A+Y+GL +GQV
Sbjct: 126 METELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQSADPVARYFGLSKGQV 185
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VT+R V
Sbjct: 186 VKIIRPSETAGRYVTFRLV 204
>gi|326430122|gb|EGD75692.1| polymerase II polypeptide E [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 114/193 (59%), Gaps = 7/193 (3%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPG 107
T +++ DRGY+V +E+ S +F +G DP L +H+ D RI + +
Sbjct: 12 TTVQLCSDRGYSVPHTEV--SKTEFEQRFGSDPRPSELDSVFAHKKDEQNRIAIFWADDL 69
Query: 108 IVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV---GLFQFKVEMFQITDLLVN 164
+ ++ ++ + ++ + G+I + Q ++T A+KAV V++F IT+L+VN
Sbjct: 70 KIGISKVKEYLDKLTQQGINAGII-VAQAKLTPSASKAVRDAASAGITVQVFDITELIVN 128
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
IT+H L P+H VL+ +EK+ LL++Y ++E+QLPRM D +A+Y GL+RGQV KV +
Sbjct: 129 ITRHELVPQHVVLSKEEKQALLQRYKLQEQQLPRMKVSDPVARYLGLKRGQVCKVIRNNS 188
Query: 225 ITES-HVTYRCVW 236
T +V+YR V+
Sbjct: 189 PTAGRYVSYRIVF 201
>gi|342884561|gb|EGU84768.1| hypothetical protein FOXB_04663 [Fusarium oxysporum Fo5176]
Length = 236
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 29/230 (12%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RT+ EM+ DR Y +A E+ +S+ FR Y +PD R +
Sbjct: 9 DARSKEVVRLWRAWRTIHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRAKLQFS 67
Query: 93 SDPSKRILV----------------VFCGPGIVK--------VNVIRSIISQIVNRDTLT 128
+ PS+ ++ CGP V+ VN IR ++ + T
Sbjct: 68 ARPSENMIRKNTPPVTAANPNPNPGADCGPVWVEFLADKTFGVNQIRQFAKYVITNNYKT 127
Query: 129 GLILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
G I++ ++ A K + + K+E F DLLVNIT H L PKH +L+ +EK LL
Sbjct: 128 G-IMVTHVPLSPAARKTLQSVESVAKIECFLEDDLLVNITHHELVPKHVLLSREEKLALL 186
Query: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
K+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+ + E + +YR CV
Sbjct: 187 KRYRLKETQLPRILQKDPVARYLGLKRGQVVKIIRNSETAGRYASYRLCV 236
>gi|156548548|ref|XP_001604962.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Nasonia vitripennis]
Length = 210
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ Q + + + I+++Q+ +T A +++ +
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTY-CQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQANDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|121701167|ref|XP_001268848.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
gi|119396991|gb|EAW07422.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
Length = 234
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 24/224 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS--- 88
R+ R + + RTV EML DRGY V EI + +++FR Y PD +++IS
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70
Query: 89 ----------ISHQSDPSKR-----ILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLIL 132
+ ++P + I V FC V +R+ + V+ + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAF-NHFVDENNFHTGVF 129
Query: 133 ILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
I Q I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK+ LL++Y +
Sbjct: 130 ITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 190 KESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
>gi|443703356|gb|ELU00950.1| hypothetical protein CAPTEDRAFT_226435 [Capitella teleta]
Length = 210
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 115/197 (58%), Gaps = 8/197 (4%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRIL 100
R+TV+++ DRGY V E++ ++ F+ +G P R L + ++H DP ++
Sbjct: 14 RKTVMQLCHDRGYLVTQDELDQTIDQFKDQFGDKPSERRPARSDLIVLVAHNDDPIDQMF 73
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQI 158
V F V + I++ Q + + ++ I+++Q +T A +++ ++ +E F
Sbjct: 74 VFFPDEPKVGIKTIKTY-CQRMQEENISRAIIVVQAGMTPSAKQSLVDMAPKYILEQFLE 132
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LL+NIT+H L P+H +LT +EK +LL +Y ++E QLPR+ + D +A+Y+GL+RG VVK
Sbjct: 133 AELLINITEHTLVPEHVLLTPEEKAELLTRYKLKESQLPRIQQGDPVARYFGLKRGSVVK 192
Query: 219 VTYSGEITESHVTYRCV 235
+ E ++TYR V
Sbjct: 193 IVRPSETAGRYITYRLV 209
>gi|397485347|ref|XP_003813812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan paniscus]
Length = 256
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 113/193 (58%), Gaps = 8/193 (4%)
Query: 50 LEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRILVVFC 104
L++ DRGY V E++ ++++F+A +G P R R + ++H DP+ ++ V F
Sbjct: 64 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 123
Query: 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLL 162
V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +LL
Sbjct: 124 EEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELL 182
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 183 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 242
Query: 223 GEITESHVTYRCV 235
E ++TYR V
Sbjct: 243 SETAGRYITYRLV 255
>gi|399218319|emb|CCF75206.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 10/207 (4%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKR 98
+R + RRT EML+DRGY + + E + +F++ Y D ++ + S ++DP+ +
Sbjct: 6 VRLFRCRRTCCEMLEDRGYFIPIQEKLEILSEFKSRYEMYDKIRSKMLLVASMRNDPNDK 65
Query: 99 ILVVFCG----PGIVKVNVIRSIISQIVNRDTLTGL---ILILQNQITSQATKAVGLFQF 151
I+V F G+ + + + ++ R G+ IL+ QN +T A +A+
Sbjct: 66 IIVYFADETKKTGVKPIRELVPSLRRLTERMEDHGIHRAILVTQNVLTPFAKEAISEAAP 125
Query: 152 K--VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
+ +E F T+LLVNITKH L PKH LT +EK LL++Y ++E Q+PR+ D +A+Y+
Sbjct: 126 RNIIENFMETELLVNITKHELVPKHVPLTAEEKRNLLQRYKVKESQIPRIQSADPVARYF 185
Query: 210 GLERGQVVKVTYSGEITESHVTYRCVW 236
GL +GQVVK+ E +VTYR +
Sbjct: 186 GLAKGQVVKIIRPSETAGRYVTYRMCF 212
>gi|225717382|gb|ACO14537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 120/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
+H DP+ ++ V F V + I+ + Q + + +T +++Q +T A +++
Sbjct: 62 AAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYITYRLV 209
>gi|221057466|ref|XP_002261241.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|194247246|emb|CAQ40646.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 205
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ + ++ + R+ I SH++D S +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDESNKI 66
Query: 100 LVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMF 156
+V F V +R + ++ + ++ IL+ QN +T A A+ + +E F
Sbjct: 67 IVYFADETKKTGVKPLRELTEKM-DEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENF 125
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
T+LLVNITKH L P+H LT EK LL++Y I+E +LPR+ D + +Y+GL +GQV
Sbjct: 126 LDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQV 185
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VTYR V
Sbjct: 186 VKIIRPSETAGRYVTYRLV 204
>gi|332022832|gb|EGI63105.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Acromyrmex echinatior]
Length = 210
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 116/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLELFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ +I++ Q S V + ++
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL
Sbjct: 126 ILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ S E +++YR V
Sbjct: 186 KRGQVVKIIRSSETAGRYISYRLV 209
>gi|154276568|ref|XP_001539129.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414202|gb|EDN09567.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 236
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 116/225 (51%), Gaps = 24/225 (10%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS-- 88
+ R+ R + + RTV EML DRGY V EI +S+ +FR Y PD ++++IS
Sbjct: 12 DADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDRNKMKISAR 71
Query: 89 -----------ISHQSDPSK-----RILVVFCGP-GIVKVNVIRSIISQIVNRDTLTGLI 131
+ S P+ I V FC V IR+ I ++ TG I
Sbjct: 72 PSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTG-I 130
Query: 132 LILQNQITSQATKAVGLFQFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ Q I+ A + + + E FQ +LLVNIT H L PKH +L+ +EK++LL++Y
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYR 190
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 191 LKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235
>gi|302503318|ref|XP_003013619.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|302665750|ref|XP_003024482.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|327294261|ref|XP_003231826.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|291177184|gb|EFE32979.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|291188539|gb|EFE43871.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|326465771|gb|EGD91224.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 236
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 115/229 (50%), Gaps = 30/229 (13%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQ----------SDPSKRILVVFCGPGIVK---------VNVIRSIISQIVNRDTLTGL 130
PSK V CG V+ IR+ +Q +++
Sbjct: 71 RPSQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAF-NQFIDQQNYHAG 129
Query: 131 ILILQNQITSQA----TKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
I I Q+ I+ A T G F E F +LLVNIT H L PKH +L+ +EK+KLL
Sbjct: 130 IFITQSPISPSAIRLLTAIPGRF---CEHFLEQELLVNITHHELVPKHILLSAEEKKKLL 186
Query: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 187 QRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|391342990|ref|XP_003745798.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Metaseiulus occidentalis]
Length = 210
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 119/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ ++ F+ +G P L + +SH
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQEELDQDLEGFKEQFGDKPSDKHPARGDLVVLVSHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + ++ I+++Q +T A +A+G +
Sbjct: 66 DDPTDQMFVFFPDEAKIGIKTIKTY-CQRMQEENISRAIIVVQAGMTPSARQALGDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NI +H L P+H VLT +EK +LL +Y ++E L R+ D +A+YYG
Sbjct: 125 YILEHFLESELLINIIEHELVPEHVVLTPEEKTELLSRYKLKENHLMRIQAGDPVARYYG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ + E +++YR V
Sbjct: 185 LKRGQVVKIIRNSETAGRYISYRLV 209
>gi|167379694|ref|XP_001735242.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Entamoeba dispar SAW760]
gi|165902841|gb|EDR28561.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Entamoeba dispar SAW760]
Length = 204
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 118/198 (59%), Gaps = 5/198 (2%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRI 99
Y + +TVLEML+DRGY + + N +++ F+ + G+ D L I + ++D + I
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 100 LVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQI 158
+V F +K +V+ +++ V + + I++ + +++S + + + K E
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTE-VESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLE 126
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+L+VN+T HVL P+H +L+ +EK++LLKKY ++E QLPR+L D I++YYG +RG VVK
Sbjct: 127 DELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVK 186
Query: 219 VTYSGEITESHVTYRCVW 236
+ E +VTYR V+
Sbjct: 187 IIRKSETAGRYVTYRAVF 204
>gi|389584405|dbj|GAB67137.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 205
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 7/200 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ + ++ + R+ I SH++D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDANNKI 66
Query: 100 LVVFCGPGIVKVNVIRSI--ISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEM 155
+V F +K ++ + +++ ++ ++ IL+ QN +T A A+ + +E
Sbjct: 67 IVYFADE--IKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F T+LLVNITKH L PKH LT EK LL++Y I+E +LPR+ D + +Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPKHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+ E +VTYR V
Sbjct: 185 VVKIIRPSETAGRYVTYRLV 204
>gi|367022836|ref|XP_003660703.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
gi|347007970|gb|AEO55458.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
Length = 234
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 30/226 (13%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQSDP 95
++ R + + RTV EM++DRGY +A E+ +S+ FRA Y +D +R ++ S + P
Sbjct: 12 KEVTRLWRAWRTVHEMVQDRGYELAEDEVKISLDRFRAEYTNEDGSPNRAKMQFS--ARP 69
Query: 96 SKRILVVF--------------CGPGIVK---------VNVIRSIISQIVNRDTLTGLIL 132
S+ ++ F CG V+ ++V++ + + G IL
Sbjct: 70 SEAMIKKFTPPPTPSNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCSANNFKAG-IL 128
Query: 133 ILQNQITSQATKAVGLF-QFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ +++QA K + + QF +E F DLLVNIT H L PKH +L+ +EK LLK+Y
Sbjct: 129 VTAVALSAQARKVMTVTSQFTLIECFLEEDLLVNITHHELVPKHVLLSREEKAALLKRYR 188
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
++E QLPR+L KD IA+Y GL++GQVVK+ + E + +YR CV
Sbjct: 189 LKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 234
>gi|48124579|ref|XP_396561.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
gi|340724888|ref|XP_003400810.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus terrestris]
gi|380012055|ref|XP_003690105.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis florea]
Length = 210
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ +I++ Q S V + ++
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL
Sbjct: 126 ILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ E +++YR V
Sbjct: 186 KRGQVVKIIRPSETAGRYISYRLV 209
>gi|302423138|ref|XP_003009399.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261352545|gb|EEY14973.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346970556|gb|EGY14008.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 231
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 29/227 (12%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISH 91
D S++ +R + + RTV EM DRGY +A SEI +S+ FR Y D V+R +++ S
Sbjct: 5 DGQSKEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFS- 63
Query: 92 QSDPSKRILVVF--------------CGP---------GIVKVNVIRSIISQIVNRDTLT 128
+ PS +L CGP G + V +R + ++
Sbjct: 64 -ARPSSDMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKA 122
Query: 129 GLILILQNQITSQATKAV-GLFQF-KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
G I++ + +TS K + L F ++E F DLLVNIT H L PKH +L+ EK LL
Sbjct: 123 G-IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALL 181
Query: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
K+Y ++E QLPR+ ++D +A+Y GL+RG VVK+ + E + +YR
Sbjct: 182 KRYRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228
>gi|383865249|ref|XP_003708087.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Megachile rotundata]
Length = 210
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ +I++ Q S V + ++
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL
Sbjct: 126 ILEQFLESELLINITEHELVPEHIVLTPDEKEELLGRYKLKENQLMRIQAGDPVARYFGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ E +++YR V
Sbjct: 186 KRGQVVKIIRPSETAGRYISYRLV 209
>gi|260788314|ref|XP_002589195.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
gi|229274370|gb|EEN45206.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
Length = 210
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ +++ + + R+T++++ DRGY V E++ + F+ +G P + L +
Sbjct: 2 DDEQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F + + I+ + Q + + ++ I+++Q +T A +A+
Sbjct: 62 VAHNDDPTDQMFVFFADEPKIGIKTIK-MYCQRMQEENISRAIIVVQMGMTPSAKQALVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F ++LL+NIT+H L P+H V+T +EK +LL +Y ++E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYR 233
+Y+GL+RGQVVK+ E +++YR
Sbjct: 181 RYFGLKRGQVVKIIRPSETAGRYISYR 207
>gi|322797006|gb|EFZ19320.1| hypothetical protein SINV_02648 [Solenopsis invicta]
Length = 211
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ ++ F+ +G P + L + ++H
Sbjct: 7 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQDLEQFKEQFGDKPSEKKPARSDLIVLVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ +I++ Q S V + ++
Sbjct: 67 DDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKY 126
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL
Sbjct: 127 ILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPVARYFGL 186
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ S E +++YR V
Sbjct: 187 KRGQVVKIIRSSETAGRYISYRLV 210
>gi|124514006|ref|XP_001350359.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|23615776|emb|CAD52768.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 205
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 13/203 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR----ISISHQSDPS 96
R+Y R+T EML+DRGY + E + F+ ++ D DR R IS +H++D +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFE---DNDRQRSKMGISTTHKNDSN 63
Query: 97 KRILVVFCGPGIVKVNVIRSI--ISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFK 152
RI+V F VK ++ + +++ + ++ IL+ QN +T A A+ +
Sbjct: 64 NRIIVYFADE--VKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E F T+LLVNITKH L P+H LT EK+ LL++Y I E +LPR+ D + +Y+GL
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLS 181
Query: 213 RGQVVKVTYSGEITESHVTYRCV 235
+GQVVK+ E +VTYR V
Sbjct: 182 KGQVVKIIRPSETAGRYVTYRLV 204
>gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5 [Entamoeba histolytica HM-1:IMSS]
gi|56467420|gb|EAL45380.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044881|gb|EKE42883.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Entamoeba nuttalli P19]
gi|449705666|gb|EMD45670.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica KU27]
Length = 204
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 118/198 (59%), Gaps = 5/198 (2%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQSDPSKRI 99
Y + +TVLEML+DRGY + + N +++ F+ + G+ D L I + ++D + I
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 100 LVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQI 158
+V F +K +V+ +++ V + + I++ + +++S + + + K E
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTE-VESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLE 126
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+L+VN+T H+L P+H +L+ +EK++LLKKY ++E QLPR+L D I++YYG +RG VVK
Sbjct: 127 DELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVK 186
Query: 219 VTYSGEITESHVTYRCVW 236
+ E +VTYR V+
Sbjct: 187 IIRKSETAGRYVTYRAVF 204
>gi|402084014|gb|EJT79032.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 233
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 27/224 (12%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISI--- 89
+R++ R + + RT EML+DRGY ++ E+N+S+ F Y + D +L+ S
Sbjct: 8 TREARRLWRAWRTAHEMLQDRGYELSQEEVNISLDRFLQQYTDGAGNVDASKLKFSAHPS 67
Query: 90 -----SHQSDPSKR----------ILVVFCGPGIVK---VNVIRSIISQIVNRDTLTGLI 131
H P+++ + V F G K + IRS I V + TG I
Sbjct: 68 EAMIKKHTPPPTEQRPDPVPECGTVWVEFMGDASDKSLGIQAIRSFIQYTVEHNFHTG-I 126
Query: 132 LILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189
+I ++ I+S + K +G +E F + D+LVNIT H L PKH +L+ EK LL++Y
Sbjct: 127 MITKSPISSGSRKLIGASANYATIEAFMLDDMLVNITHHELVPKHVLLSKIEKAALLERY 186
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++E QLPR+ KD +A+Y GL+RG VVK+ S E + +YR
Sbjct: 187 RLKETQLPRIQVKDPVARYLGLKRGNVVKIIRSSETAGRYASYR 230
>gi|315056263|ref|XP_003177506.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311339352|gb|EFQ98554.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 236
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 114/229 (49%), Gaps = 30/229 (13%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLGDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQ----------SDPSKRILVVFCGP---------GIVKVNVIRSIISQIVNRDTLTGL 130
PSK V CG V IR+ +Q +++
Sbjct: 71 RPSQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAF-NQFIDQQNYHAG 129
Query: 131 ILILQNQITSQA----TKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
I I Q+ I+ A T G F E F +LLVNIT H L PKH +L+ +EK+KLL
Sbjct: 130 IFITQSPISPSAIRLLTAIPGRF---CEHFLEQELLVNITHHELVPKHILLSAEEKKKLL 186
Query: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 187 QRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|442755873|gb|JAA70096.1| Putative rna polymerase 25-kda subunit common to polymerases i ii
and iii [Ixodes ricinus]
Length = 210
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 119/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ + F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTQDQFKQQFGDKPSERRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + +T I+++Q +T A +A+G +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTY-CQRMQEENITRAIIVVQQGMTPSAKQALGDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT +EK +LL +Y ++E L ++ D +A+Y+G
Sbjct: 125 YILEHFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMKIQACDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|344243380|gb|EGV99483.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 218
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 122/217 (56%), Gaps = 16/217 (7%)
Query: 34 NGSRDSLRYYLSRRTV--------LEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRL 85
+ ++ R + R+T+ L++ DRGY V E++ ++++F+A +G P R
Sbjct: 2 DDEEETYRLWKIRKTIMQASDSLSLQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRP 61
Query: 86 R-----ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITS 140
R + ++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T
Sbjct: 62 RRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTP 120
Query: 141 QATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 198
A +++ ++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR
Sbjct: 121 SAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPR 180
Query: 199 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 IQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 217
>gi|149287100|gb|ABR23449.1| 25-kDa subunit RNA polymerase [Ornithodoros parkeri]
Length = 210
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 119/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ ++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + +T I+++Q +T A +A+ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTY-CQRMQEENITRAIIVVQQGMTPSAKQALTDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT +EK +LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|40746238|gb|EAA65394.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|259488970|tpe|CBF88854.1| TPA: RNA polymerase subunit (AFU_orthologue; AFUA_1G14110)
[Aspergillus nidulans FGSC A4]
Length = 235
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 30/230 (13%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQD--PDVDRLRIS 88
D+ R+++R + + RTV EML+DRGY V E+ + + +F+ Y G+ P ++L+I
Sbjct: 9 ADDAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQ 68
Query: 89 I----------SHQSDPSKR--------ILVVFC----GPGIVKVNVIRSIISQIVNRDT 126
+ PS R I + FC G G +V + V+
Sbjct: 69 ARPTEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTF----NHTVDEGN 124
Query: 127 LTGLILILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
I I + I+ A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK KL
Sbjct: 125 FHTGIFITKTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKL 184
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
L++Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 185 LQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 234
>gi|350422012|ref|XP_003493028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus impatiens]
Length = 210
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ +I++ Q S V + ++
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +A+Y+GL
Sbjct: 126 ILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQVGDPVARYFGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ E +++YR V
Sbjct: 186 KRGQVVKIIRPSETAGRYISYRLV 209
>gi|400596436|gb|EJP64210.1| RNA polymerase Rpb5 domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 232
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 27/228 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + +TV EM+ DR Y +A EIN+S+ FR+ + +PD R +
Sbjct: 7 DARSKEVVRLWRAWKTVHEMVADRDYELAQDEINISLDRFRSEFC-NPDGTVNRAKLQFS 65
Query: 93 SDPSKRIL--------------VVFCGPGIVK--------VNVIRSIISQIVNRDTLTGL 130
+ PS +L V CGP V+ V IR + + TG
Sbjct: 66 ARPSDAMLRKHTPPATDANPDPVPDCGPIWVEFLADKQFGVAQIRQFAKYTITNNYKTG- 124
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I++ ++ A K++ + K+E F DLLVNIT H L P+H +L+ +EK LL++
Sbjct: 125 IMVTHVALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKVALLRR 184
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
Y ++E QLPR+L KD +A+Y GL RGQVVK+ E + +YR CV
Sbjct: 185 YRLKETQLPRILAKDPVARYLGLRRGQVVKIIRVSETAGRYASYRLCV 232
>gi|358384639|gb|EHK22236.1| hypothetical protein TRIVIDRAFT_84202 [Trichoderma virens Gv29-8]
Length = 233
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 27/228 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D S++ +R + + RTV EM+ DR Y +A E+ +S+ FR Y PD R +
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVTISLDRFRDEYCH-PDGTVNRAKLQFS 66
Query: 93 SDPSKRIL--------------VVFCGPGIVK--------VNVIRSIISQIVNRDTLTGL 130
+ PS +L V CGP V+ V IR ++ + TG
Sbjct: 67 ARPSDSMLRKNTPPATASNPDPVPDCGPIWVEFLTDKQFGVGQIRQFAKYTISNNYKTG- 125
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I++ ++ A K++ + K+E F DLLVNIT H L P+H +L+ +EK LLK+
Sbjct: 126 IMVTHVPLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKR 185
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
Y ++E QLPR+L+KD +A+Y GL+RGQVVK+ E + +YR CV
Sbjct: 186 YRLKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYASYRLCV 233
>gi|156101473|ref|XP_001616430.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148805304|gb|EDL46703.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Plasmodium vivax]
Length = 205
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 115/200 (57%), Gaps = 7/200 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ + ++ + R+ I SH++D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDANNKI 66
Query: 100 LVVFCGPGIVKVNVIRSI--ISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEM 155
+V F +K ++ + +++ ++ ++ IL+ QN +T A A+ + +E
Sbjct: 67 IVYFADE--IKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F T+LLVNITKH L P+H LT EK LL++Y I+E +LPR+ D + +Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184
Query: 216 VVKVTYSGEITESHVTYRCV 235
VVK+ E +VTYR V
Sbjct: 185 VVKIIRPSETAGRYVTYRLV 204
>gi|429329987|gb|AFZ81746.1| DNA-directed RNA polymerase, putative [Babesia equi]
Length = 205
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR---ISISHQSDPSK 97
R + RRT EML+DRGY + E + +F+A Y DR R + ++ Q S+
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYE---SYDRTRSKMLLVASQKTASE 63
Query: 98 RILVVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK--V 153
++VF K V IR + ++ + D + IL+ QN +TS A A+ + +
Sbjct: 64 NKVLVFFADETKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTSFAKDAIMEASPRNII 122
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F T+LLVNIT+H L PKH LT +EK+ LL++Y ++E Q+PR+ D +A+Y+GL +
Sbjct: 123 ENFMETELLVNITRHELVPKHVPLTMEEKQNLLQRYKVKENQIPRIQSADPVARYFGLSK 182
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
GQVVK+ E +VT+R V
Sbjct: 183 GQVVKIIRPSETAGRYVTFRLV 204
>gi|15242916|ref|NP_200606.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
gi|9758367|dbj|BAB08868.1| RNA polymerase I, II and III 24.3 kDa subunit-like protein
[Arabidopsis thaliana]
gi|332009598|gb|AED96981.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
Length = 210
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 5/198 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ---DPDVDRLRISISHQSDPSK 97
R + RRTVL+ML+DRGY + S++NL ++F + + + + L +S + +P+
Sbjct: 10 RIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPNPAD 69
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEM 155
+I V + V V VI+ ++ + D + I+++ IT+ A AV +E+
Sbjct: 70 KIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTIEV 129
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F+ +L+ NIT+H L K+ VL DQ K+KLL Y++++ QLPR+L D +A+YYGL+RGQ
Sbjct: 130 FEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQ 189
Query: 216 VVKVTYSGEITESHVTYR 233
VVK+ S + + TYR
Sbjct: 190 VVKIRRSDATSLDYYTYR 207
>gi|225560287|gb|EEH08569.1| RNA polymerase subunit [Ajellomyces capsulatus G186AR]
gi|240279038|gb|EER42544.1| RNA polymerase subunit [Ajellomyces capsulatus H143]
gi|325090297|gb|EGC43607.1| RNA polymerase subunit [Ajellomyces capsulatus H88]
Length = 236
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 24/225 (10%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS-- 88
+ R+ R + + RTV EML DRGY V EI + + +FR Y PD ++++IS
Sbjct: 12 DADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISAR 71
Query: 89 -----------ISHQSDPSK-----RILVVFCGP-GIVKVNVIRSIISQIVNRDTLTGLI 131
+ S P+ I V FC V IR+ I ++ TG I
Sbjct: 72 PSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTG-I 130
Query: 132 LILQNQITSQATKAVGLFQFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ Q I+ A + + + E FQ +LLVNIT H L PKH +L+ +EK++LL++Y
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYR 190
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 191 LKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235
>gi|261200923|ref|XP_002626862.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593934|gb|EEQ76515.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607191|gb|EEQ84178.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327351148|gb|EGE80005.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 236
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 26/226 (11%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS-- 88
+ R+ R + + RTV EML DRGY V EI + + +FR Y PD ++++IS
Sbjct: 12 DADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISAR 71
Query: 89 -------------ISHQSDPSKR---ILVVFCGPGIVKVNV--IRSIISQIVNRDTLTGL 130
+ + +P I V FC P I V +R+ I ++ TG
Sbjct: 72 PSQAMMDRYTPLPTTLKPNPVPECGTIYVEFC-PDIHSVGTKQVRAFNHFIDEQNYHTG- 129
Query: 131 ILILQNQITSQATKAVGLFQFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189
I I Q I+ A + + + E FQ +LLVNIT H L PKH +L+ +EK++LL++Y
Sbjct: 130 IFISQTPISPSAIRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|281341350|gb|EFB16934.1| hypothetical protein PANDA_012732 [Ailuropoda melanoleuca]
Length = 193
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 113/193 (58%), Gaps = 8/193 (4%)
Query: 50 LEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRILVVFC 104
L++ DRGY V E++ ++++F+A +G P R R + ++H DP+ ++ V F
Sbjct: 1 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 60
Query: 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLL 162
V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +LL
Sbjct: 61 EEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELL 119
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 120 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 179
Query: 223 GEITESHVTYRCV 235
E ++TYR V
Sbjct: 180 SETAGRYITYRLV 192
>gi|194752750|ref|XP_001958682.1| GF12445 [Drosophila ananassae]
gi|190619980|gb|EDV35504.1| GF12445 [Drosophila ananassae]
Length = 210
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ S E +++YR V
Sbjct: 185 LKRGQVVKIIRSSETAGRYISYRLV 209
>gi|242017042|ref|XP_002429002.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212513848|gb|EEB16264.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 210
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-----DRLRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ Q + + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDDPKIGIKTIKTY-CQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL++Y ++E QL R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIVRPSETAGRYISYRLV 209
>gi|340521475|gb|EGR51709.1| predicted protein [Trichoderma reesei QM6a]
Length = 237
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 31/232 (13%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD------VDRLR 86
D S++ +R + + RTV EM+ DR Y +A E+N+S+ FR Y PD R +
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVNISLDRFRDEYCH-PDGTLTQKNSRAK 66
Query: 87 ISISHQ------------SDPSKRILVVFCGPGIVK--------VNVIRSIISQIVNRDT 126
+ S + + PS V CGP V+ V IR ++ +
Sbjct: 67 LQFSARPSDSMLRKNTPPATPSNPDPVPDCGPIWVEFLTDKQFGVGQIRQFAKYTISNNY 126
Query: 127 LTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEK 184
TG I++ ++ A K++ + K+E F DLLVNIT H L P+H +L+ +EK
Sbjct: 127 KTG-IMVTHVPLSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIA 185
Query: 185 LLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+ E + +YR CV
Sbjct: 186 LLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYASYRLCV 237
>gi|91087261|ref|XP_975533.1| PREDICTED: similar to AGAP010064-PA [Tribolium castaneum]
gi|270010583|gb|EFA07031.1| hypothetical protein TcasGA2_TC010003 [Tribolium castaneum]
Length = 210
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 116/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ G P R L I ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ + + +I++ Q S V + ++
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+GL
Sbjct: 126 ILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKLKENMLMRIQAGDPVARYFGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ E +++YR V
Sbjct: 186 KRGQVVKIIRPSETAGRYISYRLV 209
>gi|119186603|ref|XP_001243908.1| hypothetical protein CIMG_03349 [Coccidioides immitis RS]
gi|303317654|ref|XP_003068829.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108510|gb|EER26684.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038831|gb|EFW20766.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
gi|392870629|gb|EAS32444.2| DNA-directed RNA polymerase II polypeptide [Coccidioides immitis
RS]
Length = 236
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 24/224 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI-- 89
R+ R + + RTV EML DRGY V E+N+ + +FR Y PD +++RIS
Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72
Query: 90 --------SHQSDPSK--------RILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLIL 132
+ + P+K I V FC V +R+ + ++ TG I
Sbjct: 73 SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG-IF 131
Query: 133 ILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
I Q+ I+ A + + G+ E F +LLVNIT H L PKH +L+ +EK++LL++Y +
Sbjct: 132 ITQSPISPSAIRLLTGIPGRFCEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 192 KESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|310792261|gb|EFQ27788.1| RNA polymerase Rpb5 domain-containing protein [Glomerella
graminicola M1.001]
Length = 230
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 29/226 (12%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQSD 94
+++ R + + RT EM DRGY +A E+ +S+ F+ Y D V+R ++ S ++
Sbjct: 8 NKEVTRLWRAWRTAHEMAADRGYELAEDELTISLDRFKMEYTSADGSVNRNKLQFS--AN 65
Query: 95 PSKRILVVFCGPGIVK----------------------VNVIRSIISQIVNRDTLTGLIL 132
PS ++ F P + + I+ I +++ +G I+
Sbjct: 66 PSAEMIRKFTPPATPQNPNPAPECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSG-IM 124
Query: 133 ILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
I ++ A K + + KVE F DLLVNITKH L PKH +L+ +EK LLK+Y
Sbjct: 125 ITHVALSPAARKMLITIESFAKVECFLEEDLLVNITKHELVPKHILLSREEKIALLKRYR 184
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
++E QLPR+L+KD +A+Y GL+RGQVVK+ + E + +YR CV
Sbjct: 185 LKETQLPRILQKDPVAKYLGLKRGQVVKIIRTSETAGRYASYRLCV 230
>gi|354480932|ref|XP_003502657.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cricetulus griseus]
Length = 235
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 113/195 (57%), Gaps = 8/195 (4%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRILVV 102
++ + DRGY V E++ ++++F+A +G P R R + ++H DP+ ++ V
Sbjct: 41 ALMGLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 100
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITD 160
F V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +
Sbjct: 101 FPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQE 159
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 160 LLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKII 219
Query: 221 YSGEITESHVTYRCV 235
E ++TYR V
Sbjct: 220 RPSETAGRYITYRLV 234
>gi|19922004|ref|NP_610630.1| Rpb5, isoform A [Drosophila melanogaster]
gi|442623281|ref|NP_001260878.1| Rpb5, isoform B [Drosophila melanogaster]
gi|194884129|ref|XP_001976148.1| GG22706 [Drosophila erecta]
gi|195333273|ref|XP_002033316.1| GM20482 [Drosophila sechellia]
gi|195483584|ref|XP_002090346.1| GE13062 [Drosophila yakuba]
gi|195551744|ref|XP_002076283.1| GD15257 [Drosophila simulans]
gi|7303678|gb|AAF58728.1| Rpb5, isoform A [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila melanogaster]
gi|190659335|gb|EDV56548.1| GG22706 [Drosophila erecta]
gi|194125286|gb|EDW47329.1| GM20482 [Drosophila sechellia]
gi|194176447|gb|EDW90058.1| GE13062 [Drosophila yakuba]
gi|194201932|gb|EDX15508.1| GD15257 [Drosophila simulans]
gi|220948406|gb|ACL86746.1| Rpb5-PA [synthetic construct]
gi|220957602|gb|ACL91344.1| Rpb5-PA [synthetic construct]
gi|440214282|gb|AGB93411.1| Rpb5, isoform B [Drosophila melanogaster]
Length = 210
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ S E +++YR V
Sbjct: 185 LKRGQVVKIIRSSETAGRYISYRLV 209
>gi|149034606|gb|EDL89343.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034607|gb|EDL89344.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034608|gb|EDL89345.1| rCG29511, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
Query: 51 EMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRILVVFCG 105
++ DRGY V E++ ++++F+A +G P R R + ++H DP+ ++ V F
Sbjct: 11 QLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPE 70
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLV 163
V + I+ + Q + + +T ++++Q +T A +++ ++ +E F +LL+
Sbjct: 71 EPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 129
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+
Sbjct: 130 NITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPS 189
Query: 224 EITESHVTYRCV 235
E ++TYR V
Sbjct: 190 ETAGRYITYRLV 201
>gi|345562747|gb|EGX45783.1| hypothetical protein AOL_s00140g99 [Arthrobotrys oligospora ATCC
24927]
Length = 225
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 23/225 (10%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D +R+ R Y + RT EM+ DRGY + E+N+S+ DF+ Y D D R ++
Sbjct: 3 DADAREVSRLYRAWRTAHEMIADRGYDLTEEELNISLDDFKVKYC-DSDGRPQRKKMTFS 61
Query: 93 SDPSKR--------------------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLIL 132
+ PS+ I + F + + +R IV + TG +
Sbjct: 62 AKPSQSMIDRNTDTQTGQLIPNSCGTIWIEFSPEPSIGIKQMRVFAHTIVEHNFHTG-VF 120
Query: 133 ILQNQITSQATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
I +TS A K + V E F DLLVNIT+H L P+H +++ ++K KLL++Y +
Sbjct: 121 ITMAPLTSSAAKIIPTVAPSVIECFLEQDLLVNITRHELVPQHVLMSREDKRKLLERYRL 180
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
+E QLPR+ + D +A+Y+GL+RG VVK+ E + +YR V+
Sbjct: 181 KETQLPRIQQADPVAKYFGLKRGMVVKIIRKSETAGRYASYRWVY 225
>gi|345786834|ref|XP_854641.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Canis lupus familiaris]
Length = 210
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 118/209 (56%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDQKA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G+ QVVK+ E ++TYR V
Sbjct: 181 RYFGIAHPQVVKIIRPSETAGRYITYRLV 209
>gi|378727418|gb|EHY53877.1| DNA-directed RNA polymerase II subunit E [Exophiala dermatitidis
NIH/UT8656]
Length = 238
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 28/227 (12%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD---VDRLRISI-- 89
G ++ R + + RTVLEML DRGYA+A E+ ++ DF+ +G DP V+R + +
Sbjct: 13 GEKELTRLWRTWRTVLEMLVDRGYAIAQDELAITRDDFQRKFG-DPSTGHVERRLMKLQA 71
Query: 90 -------------SHQSDPSKR-----ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLI 131
+S+P+ + I V F + + +R+ +Q ++ + T I
Sbjct: 72 VPTEEMIKRDTPRPTKSNPNPQTTAGTIWVEFSPETTIGIKHLRAF-AQHLDANKFTTGI 130
Query: 132 LILQNQITSQATKAVGLFQ---FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I + +T+ A +A E FQ +DLLVNIT+H L PKH +L+ +EK+ LL +
Sbjct: 131 FITISPVTAAALRAFEPLAERGITAEWFQESDLLVNITRHELVPKHVLLSAEEKKVLLDR 190
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y ++E QLPR+ D +A+Y GL+RG VVK+ E + +YR V
Sbjct: 191 YRLKETQLPRIQFNDPVAKYLGLKRGNVVKIIRKSETAGRYASYRWV 237
>gi|340959991|gb|EGS21172.1| RNA polymerases I, II, and III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 547
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 29/214 (13%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISHQSDP 95
++ R + + RTV EM++DRGY +A E+ +S++ F+A Y +D +R ++ S + P
Sbjct: 12 KEVTRLWRAWRTVHEMVQDRGYELADEEVKISLERFKAEYTNEDGSPNRAKMQFSAR--P 69
Query: 96 SKRILVVF--------------CGPGIVK---------VNVIRSIISQIVNRDTLTGLIL 132
S+ ++ F CG V+ ++V++ + + G IL
Sbjct: 70 SEAMIKKFTPPPTPQNPDPQPECGTIWVEFCPEKTSIGISVMKKFVEHCAQNNFKAG-IL 128
Query: 133 ILQNQITSQATKAVGLF-QFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ ++SQA K + + QF +E F DLLVNIT H L PKH +L+ +EK LLK+Y
Sbjct: 129 VTAVALSSQARKVMTVTSQFTLIECFLEEDLLVNITHHELVPKHILLSREEKAALLKRYR 188
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
++E QLPR+L KD IA+Y GL+RGQVVK+ + E
Sbjct: 189 LKETQLPRILSKDPIARYLGLKRGQVVKIIRTSE 222
>gi|195164101|ref|XP_002022887.1| GL16482 [Drosophila persimilis]
gi|198471627|ref|XP_002133786.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
gi|194104949|gb|EDW26992.1| GL16482 [Drosophila persimilis]
gi|198146002|gb|EDY72413.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ S E +++YR V
Sbjct: 185 LKRGQVVKIIRSSETAGRYISYRLV 209
>gi|195426896|ref|XP_002061524.1| GK20665 [Drosophila willistoni]
gi|194157609|gb|EDW72510.1| GK20665 [Drosophila willistoni]
Length = 210
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ + E +++YR V
Sbjct: 185 LKRGQVVKIIRASETAGRYISYRLV 209
>gi|289740815|gb|ADD19155.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 122/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|357609342|gb|EHJ66401.1| hypothetical protein KGM_04074 [Danaus plexippus]
Length = 210
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 120/205 (58%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ ++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDEAKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H VLT EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEHFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ S E +++YR V
Sbjct: 185 LKRGQVVKIIRSSETAGRYISYRLV 209
>gi|226289047|gb|EEH44559.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 236
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 24/224 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS--- 88
R+ + + + RTV EML DRGY V EI + +++FR Y PD ++++IS
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDRNKMKISARP 72
Query: 89 ----------ISHQSDPSK-----RILVVFCGP-GIVKVNVIRSIISQIVNRDTLTGLIL 132
+ S P+ I V FC V +R+ I ++ TG I
Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTG-IF 131
Query: 133 ILQNQITSQATKAVGLFQFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
I Q I+ A + + + E FQ +LLVNIT H L PKH +L+ +EK++LL++Y +
Sbjct: 132 ISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 191
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 192 KESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|406866728|gb|EKD19767.1| RNA polymerase subunit [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 231
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISH 91
+ G R++ R + + RTV EM+ DRGY ++ E+ +S DF++ Y D ++R + S
Sbjct: 12 EAGDREAARLWRAWRTVHEMVADRGYELSEEEVKISFADFKSTYTLADGSINRKGMQFSA 71
Query: 92 QSDPSKRILVVFCGP------GIVKVNVIRSI---------ISQIVNRDTLTGLILILQN 136
+ PS +++ + P G V V + +Q + ++ IL+
Sbjct: 72 R--PSDKMMKQYALPDGTSDIGTVWVEFLNETNVGIKQMRTFAQYCSANSFATGILVTAV 129
Query: 137 QITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 194
IT A K + + ++E F DLLVNIT H L PKH L+ EK+ LL++Y +++
Sbjct: 130 TITPAALKIIPAVASETRIECFMDADLLVNITHHELVPKHITLSRDEKKALLERYRLKDT 189
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
QLPR+ D +A+Y GL RGQVVK+ E + +YR CV
Sbjct: 190 QLPRIQLNDPVAKYLGLRRGQVVKIIRKSETAGRYASYRLCV 231
>gi|296424747|ref|XP_002841908.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638159|emb|CAZ86099.1| unnamed protein product [Tuber melanosporum]
Length = 220
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 122/215 (56%), Gaps = 20/215 (9%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+S R + + RTV EM KDRGY ++ EI +++++FR Y D + +R +++ +++PS
Sbjct: 5 RESSRLWRAWRTVHEMAKDRGYEISEEEITITLEEFRHQYC-DGEGRPIRKNLTFKANPS 63
Query: 97 KRIL-----------------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQIT 139
++ V F + + +R+ I + + TG I I + T
Sbjct: 64 PSMIKQHAPAPNQPATVGTLWVEFSAESNIGIKHMRAFAHTINSENFHTG-IFICSSHPT 122
Query: 140 SQATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 198
A K V + +E+F +DLLVNITKH L P+H +L+ +EK+KLL++Y ++E QLPR
Sbjct: 123 PAAMKIVPTVLPSVIEVFLESDLLVNITKHELVPRHILLSREEKKKLLERYRLKESQLPR 182
Query: 199 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+ D +A+YYGL+RG VVK+ E + + +YR
Sbjct: 183 IQGADPVARYYGLKRGHVVKIVRKSETSGRYASYR 217
>gi|195119282|ref|XP_002004160.1| GI19761 [Drosophila mojavensis]
gi|195401380|ref|XP_002059291.1| GJ18195 [Drosophila virilis]
gi|193909228|gb|EDW08095.1| GI19761 [Drosophila mojavensis]
gi|194142297|gb|EDW58703.1| GJ18195 [Drosophila virilis]
Length = 210
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T ++K++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ S E +++YR V
Sbjct: 185 LKRGQVVKIIRSSETAGRYISYRLV 209
>gi|195026900|ref|XP_001986362.1| GH20567 [Drosophila grimshawi]
gi|193902362|gb|EDW01229.1| GH20567 [Drosophila grimshawi]
Length = 210
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T ++K++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ S E +++YR V
Sbjct: 185 LKRGQVVKIIRSSETAGRYISYRLV 209
>gi|452004738|gb|EMD97194.1| hypothetical protein COCHEDRAFT_1163800 [Cochliobolus
heterostrophus C5]
Length = 234
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 27/223 (12%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQSD---- 94
+R + RT EM+ DRGY V ++ +S+++F Y +D + DR R++ S Q
Sbjct: 11 IRLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYAREDGEPDRSRLNFSCQPSEEMI 70
Query: 95 ------PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN-- 136
P+K+ I V F V + +R ++ +VN +G+++ ++
Sbjct: 71 AKYTDAPTKKNPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVKAMT 130
Query: 137 ----QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 192
++ AT + VE+F DLLVNITKH L PKH +L+DQEK++LL++Y ++
Sbjct: 131 GMAIRLLRGATSITDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSDQEKQQLLQRYRLK 190
Query: 193 EKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+ QLPR+ D +A+Y GL RG VVK+ E + +YR V
Sbjct: 191 QTQLPRIQSTDPVAKYLGLRRGAVVKIIRKSETAGRYASYRWV 233
>gi|296822412|ref|XP_002850281.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
gi|238837835|gb|EEQ27497.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
Length = 236
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 115/228 (50%), Gaps = 30/228 (13%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS-- 88
R+ R + + RTV E+L DRGY V E+ +S+ +FR Y PD +++RIS
Sbjct: 12 EADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISAR 71
Query: 89 -----------ISHQSDPSKR-----ILVVFCGPG-IVKVNVIRSIISQIVNRDTLTGLI 131
+ S P+ I V FC V IR+ +Q +++ I
Sbjct: 72 PSQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAF-NQFIDQQNYHAGI 130
Query: 132 LILQNQITSQA----TKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
I Q+ I+ A T G F E F +LLVNIT H L PKH +L+ +EK+KLL+
Sbjct: 131 FITQSPISPSAIRLLTAIPGRF---CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQ 187
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 188 RYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|451853318|gb|EMD66612.1| hypothetical protein COCSADRAFT_35119 [Cochliobolus sativus ND90Pr]
Length = 234
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 27/223 (12%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQSD---- 94
+R + RT EM+ DRGY V ++ +S+++F Y +D + DR R++ S Q
Sbjct: 11 IRLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYAREDGEPDRSRLNFSCQPSEEML 70
Query: 95 ------PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN-- 136
P+K+ I V F V + +R ++ +VN +G+++ ++
Sbjct: 71 AKYTDAPTKKNPNPTPSIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVKAMT 130
Query: 137 ----QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 192
++ AT + VE+F DLLVNITKH L PKH +L+DQEK++LL++Y ++
Sbjct: 131 GMAIRLLRGATSITDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSDQEKQQLLQRYRLK 190
Query: 193 EKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+ QLPR+ D +A+Y GL RG VVK+ E + +YR V
Sbjct: 191 QTQLPRIQSTDPVAKYLGLRRGAVVKIIRKSETAGRYASYRWV 233
>gi|156089419|ref|XP_001612116.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
gi|154799370|gb|EDO08548.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
Length = 205
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 113/203 (55%), Gaps = 11/203 (5%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR----ISISHQSDPS 96
R + RRT EML+DRGY + E + +F+A Y DR+R + S ++D
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYEL---YDRVRSKMLLVASLKTDKD 63
Query: 97 KRILVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKV 153
++LV F V IR + ++ + D + IL+ QN +T A A+ + +
Sbjct: 64 AKLLVYFADETKKTGVKPIRELTEKMEDHD-IHRAILVTQNVLTPFAKDAILEAAPRNII 122
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F T+LLVNITKH L PKH LT EK+ LL++Y ++E Q+PR+ D +A+Y+GL +
Sbjct: 123 ENFLETELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQIPRIQAADPVARYFGLTK 182
Query: 214 GQVVKVTYSGEITESHVTYRCVW 236
GQVVK+ E +VT+R V+
Sbjct: 183 GQVVKIIRPSETAGRYVTFRLVY 205
>gi|332373332|gb|AEE61807.1| unknown [Dendroctonus ponderosae]
Length = 210
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 116/204 (56%), Gaps = 6/204 (2%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEHFGDKPSEKRPSRSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QF 151
DP+ ++ V F + + I++ ++ + + +I++ S V + ++
Sbjct: 66 DDPTDQMFVFFPDEPKIGIRTIKTYCQRMQDENIHRAIIVVQAGMTPSAKQSLVDMAPKY 125
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F ++LL+NIT+H L P+H V+ +EK++LL +Y ++E L R+ D +A+Y+GL
Sbjct: 126 ILEQFLESELLINITEHELVPEHVVMNPEEKQELLARYKLKENMLMRIQAGDPVARYFGL 185
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ S E +++YR V
Sbjct: 186 KRGQVVKIIRSSETAGRYISYRLV 209
>gi|295671500|ref|XP_002796297.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284430|gb|EEH39996.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 236
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 24/224 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRIS--- 88
R+ + + + RTV EML DRGY V EI + + +FR Y PD ++++IS
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 89 ----------ISHQSDPSK-----RILVVFCGP-GIVKVNVIRSIISQIVNRDTLTGLIL 132
+ S P+ I V FC V +R+ I ++ TG I
Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTG-IF 131
Query: 133 ILQNQITSQATKAVGLFQFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
I Q I+ A + + + E FQ +LLVNIT H L PKH +L+ +EK++LL++Y +
Sbjct: 132 ISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 191
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 192 KESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|31235339|ref|XP_319221.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|157128329|ref|XP_001661404.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|170059825|ref|XP_001865530.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
gi|30174740|gb|EAA43596.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|108872649|gb|EAT36874.1| AAEL011087-PA [Aedes aegypti]
gi|167878475|gb|EDS41858.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
Length = 210
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|399949804|gb|AFP65461.1| RNA polymerase I, II and III 24.3 kDa subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 216
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 121/211 (57%), Gaps = 14/211 (6%)
Query: 36 SRDS--LRYYLSRRTVLEMLKDRGYAVALSEINLSVQD--FRAIYGQDPDVDR--LRISI 89
SRD + R+TV ++L+DRG+ V ++ +L + F + ++ + R L I
Sbjct: 3 SRDKEIFNVFRVRKTVFQILRDRGFIVLDNQEDLDMPRTVFERKFVKNYQIVREELEIIR 62
Query: 90 SHQSDPSKRILVVFC----GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
+ +ILV F G + V IR +I +D IL+L ++TS A +A
Sbjct: 63 PKWQMENHKILVAFVQGEKGKLTIGVKSIREYCERI-KQDNYESSILVLHGRLTSHAKQA 121
Query: 146 VGLFQF---KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKK 202
+ ++E F ++L++NIT+H L PKH++++ +EK+ LLK+YSI+E QLPR+ KK
Sbjct: 122 ISSINSVSDRIEYFSESELIINITEHCLVPKHEIISLEEKKSLLKRYSIKENQLPRINKK 181
Query: 203 DAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
D IA+YYGL + Q++K+T S E ++T+R
Sbjct: 182 DPIARYYGLHKNQIIKITRSSEPAGKYITFR 212
>gi|84997627|ref|XP_953535.1| DNA-directed RNA polymerase, subunit (RPB5 homologue) [Theileria
annulata strain Ankara]
gi|65304531|emb|CAI76910.1| DNA-directed RNA polymerase, subunit (RPB5 homologue), putative
[Theileria annulata]
Length = 205
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 5/199 (2%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQSDPSKRI 99
R + RRT EML+DRGY + E + +F+A Y D ++ + S ++ ++
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTAAENKL 66
Query: 100 LVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMF 156
LV F V IR + ++ + D + IL+ QN +T A A+ K +E F
Sbjct: 67 LVYFADEKKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTPFAKDAIMEAYPKNIIENF 125
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
T+LLVNITKH L PKH LT +EK+ LL+KY ++E Q+PR+ D +A+Y+GL +GQV
Sbjct: 126 METELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQSADPVARYFGLSKGQV 185
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E +VT+R V
Sbjct: 186 VKIIRPSETAGRYVTFRLV 204
>gi|312383157|gb|EFR28348.1| hypothetical protein AND_03878 [Anopheles darlingi]
Length = 210
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L + ++H
Sbjct: 6 ETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|297796715|ref|XP_002866242.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
gi|297312077|gb|EFH42501.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
Length = 213
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 117/201 (58%), Gaps = 8/201 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD------PDVDRLRISISHQSD 94
R + RRTVL+ML+DRGY + S++NL ++F + + + + L ++ + +
Sbjct: 10 RLFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKPMNNMNKVNKEALFVAANKGPN 69
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FK 152
P+ +I V + V V VI+ ++ + D + I+++ IT A A+
Sbjct: 70 PADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVPRGIVVVPMPITGPARMAISELNKILT 129
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E+F+ +L+ NIT+H L K+ VL DQ K++LLK Y++++ QLPR+L D +A+YYGL+
Sbjct: 130 IEVFEEAELVTNITEHKLINKYYVLDDQAKKELLKTYTVQDTQLPRILVSDPLARYYGLK 189
Query: 213 RGQVVKVTYSGEITESHVTYR 233
RGQ+VK+ S + + TYR
Sbjct: 190 RGQIVKIRRSDVTSLDYYTYR 210
>gi|300120101|emb|CBK19655.2| DNA-directed RNA polymerase II [Blastocystis hominis]
Length = 215
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 117/205 (57%), Gaps = 8/205 (3%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ---DPDVDRLRISISHQSDP 95
+ + + R+TV +ML RGYA++ + ++++ F Y +PD+ +L I D
Sbjct: 9 TTKLFRVRKTVFKMLSKRGYAISDKDQSMTLDTFVKDYCDAETNPDLLKLTIISRKTEDE 68
Query: 96 SKRILVVFCGPGIVKVN--VIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK- 152
R++V F K+N S I ++ + + + +IL+ ++TS+A K K
Sbjct: 69 DDRVVVFFIRSVDKKINGKDFESKIEKVSSEENVKRIILVFGGELTSEAKKKANSASKKN 128
Query: 153 --VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
VE FQ +L+V+IT+H L P+HQ+L QEK LLK+Y +EE+QLPR+ K D +A+Y+G
Sbjct: 129 LIVESFQEDELVVDITEHELVPEHQLLKPQEKADLLKQYGLEERQLPRIQKLDPVARYFG 188
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
++G+V ++ E +VTYR V
Sbjct: 189 AQKGEVFRIVRKSETAGKYVTYRIV 213
>gi|258563314|ref|XP_002582402.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907909|gb|EEP82310.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 239
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 27/227 (11%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD------PDVDRLRIS 88
+R+ R + + +TV EML DRGY V E+ +S+ DFR+ Y P +++RIS
Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72
Query: 89 I----------SHQSDPSKRILVVFCGPGIVKVNV---------IRSIISQIVNRDTLTG 129
+ P+K V CG V+ +R+ + ++ TG
Sbjct: 73 ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132
Query: 130 LILILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I I Q+ I+ A + + G+ E F +LLVNIT H L PKH +L+ +EK++LL +
Sbjct: 133 -IFITQSPISPSAVRLLTGIPGRFCEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y ++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 192 YRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 238
>gi|320590726|gb|EFX03169.1| RNA polymerase subunit [Grosmannia clavigera kw1407]
Length = 237
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 29/225 (12%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDF-RAIYGQDPDVDRLRISISHQSDP 95
R+ + + + RTV EM +DRGY +A E+ +S DF R D DR ++ S + P
Sbjct: 16 RELRKLWRAWRTVHEMCQDRGYELAEDEVKISFDDFVRQFSLPDGTADRGKMQFS--ARP 73
Query: 96 SKRILVVFCGPGI----------------------VKVNVIRSIISQIVNRDTLTGLILI 133
S+ ++ F P + V I+ + Q + ++ I++
Sbjct: 74 SESMIKKFTPPPTAARPDPPTECGTIWVEFMTEQQIGVKEIKRFL-QHCSENSFRAGIMV 132
Query: 134 LQNQITSQATKAVG--LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
Q +++QA K + + ++E F DLLVNIT H L P H +L+ +EK LL +Y +
Sbjct: 133 TQGALSAQARKVINATMMYTQIECFMQDDLLVNITHHELVPTHVLLSKEEKTALLSRYRL 192
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
+E QLPR+ +KD +A+Y GL+RGQVVK+ + E + +YR CV
Sbjct: 193 KETQLPRIQQKDPVARYLGLKRGQVVKIIRTSETAGRYASYRLCV 237
>gi|289740817|gb|ADD19156.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ + + R+T++++ DRGY V E++ +++ F+ ++G P R L + ++H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQ 150
DP+ ++ V F + + I++ +++ + + I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTYCTRM-QEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL NIT+H L P+H V+T +EK++LL +Y ++E L R+ D +A+Y+G
Sbjct: 125 YILEQFLESELLTNITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQAGDPVARYFG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRLSETAGRYISYRLV 209
>gi|297275632|ref|XP_001117242.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Macaca mulatta]
Length = 203
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 112/190 (58%), Gaps = 8/190 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ D+ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQV 216
+Y+G++RGQV
Sbjct: 181 RYFGIKRGQV 190
>gi|326480400|gb|EGE04410.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 276
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 108/213 (50%), Gaps = 30/213 (14%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQ----------SDPSKRILVVFCGP---------GIVKVNVIRSIISQIVNRDTLTGL 130
PSK V CG V IR+ +Q +++
Sbjct: 71 RPSQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAF-NQFIDQQNYHAG 129
Query: 131 ILILQNQITSQA----TKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
I I Q+ I+ A T G F E F +LLVNIT H L PKH +L+ +EK+KLL
Sbjct: 130 IFITQSPISPSAIRLLTAIPGRF---CEHFLEQELLVNITHHELVPKHILLSAEEKKKLL 186
Query: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
++Y ++E QLPR+ D +A+Y GL RGQVVK+
Sbjct: 187 QRYRLKESQLPRIQNGDPVAKYLGLRRGQVVKI 219
>gi|326475256|gb|EGD99265.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
Length = 228
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 30/218 (13%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D R+ R + + RTV E+L DRGY V E+ +S+ DF+ Y PD +++RIS
Sbjct: 11 DEADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISA 70
Query: 90 SHQ----------SDPSKRILVVFCGPGIVK---------VNVIRSIISQIVNRDTLTGL 130
PSK V CG V+ IR+ +Q +++
Sbjct: 71 RPSQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAF-NQFIDQQNYHAG 129
Query: 131 ILILQNQITSQA----TKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLL 186
I I Q+ I+ A T G F E F +LLVNIT H L PKH +L+ +EK+KLL
Sbjct: 130 IFITQSPISPSAIRLLTAIPGRF---CEHFLEQELLVNITHHELVPKHILLSAEEKKKLL 186
Query: 187 KKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
++Y ++E QLPR+ D +A+Y GL RGQVVK+ E
Sbjct: 187 QRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSE 224
>gi|171688464|ref|XP_001909172.1| hypothetical protein [Podospora anserina S mat+]
gi|170944194|emb|CAP70304.1| unnamed protein product [Podospora anserina S mat+]
Length = 235
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 26/220 (11%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDF-RAIYGQDPDVDRLRISISHQS------ 93
R + + RT+ EM+ DRGY +A EI + + +F R D +R +S S +
Sbjct: 17 RLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPSASMIK 76
Query: 94 -----------DPSKR---ILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQI 138
DP+ I V FC + ++V++ + N G IL+ +
Sbjct: 77 KFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAG-ILVTAVAL 135
Query: 139 TSQATKAVGLF-QFK-VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
++QA K + + Q+ +E F DLLVNIT H L P H +L+ +EK LLK+Y ++E QL
Sbjct: 136 SAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYRLKETQL 195
Query: 197 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
PR+L+KD IA+Y GL+RGQVVK+ E + +YR CV
Sbjct: 196 PRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235
>gi|149034611|gb|EDL89348.1| rCG29511, isoform CRA_d [Rattus norvegicus]
Length = 242
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 112/190 (58%), Gaps = 8/190 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQV 216
+Y+G++RGQV
Sbjct: 181 RYFGIKRGQV 190
>gi|330933135|ref|XP_003304060.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
gi|311319571|gb|EFQ87830.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
Length = 235
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 27/223 (12%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQSD---- 94
+R + +T EM+ DRGY V ++N+S+ F Y +D + DR R++ S Q
Sbjct: 12 MRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFSRKYAREDGEPDRSRLNFSCQPSEEML 71
Query: 95 ------PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN-- 136
P+K+ I V F V + +R ++ +VN +G+++ ++
Sbjct: 72 AKYTDAPTKKVPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPMT 131
Query: 137 ----QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 192
++ AT + VE+F DLLVNITKH L PKH +L+D+EK++LL++Y ++
Sbjct: 132 GMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLK 191
Query: 193 EKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+ QLPR+ D +A+Y GL RG VVK+ E + +YR V
Sbjct: 192 QTQLPRIQSTDPVAKYLGLRRGAVVKIIRKSETAGRYASYRWV 234
>gi|410949981|ref|XP_003981695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Felis catus]
Length = 212
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 112/190 (58%), Gaps = 8/190 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQV 216
+Y+G++RGQV
Sbjct: 181 RYFGIKRGQV 190
>gi|189192274|ref|XP_001932476.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974082|gb|EDU41581.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 235
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 27/223 (12%)
Query: 40 LRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDVDRLRISISHQSD---- 94
+R + +T EM+ DRGY V ++N+S+ F Y +D + DR R++ S Q
Sbjct: 12 MRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYAREDGEPDRSRLNFSCQPSEEML 71
Query: 95 ------PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN-- 136
P+K+ I V F V + +R ++ +VN +G+++ ++
Sbjct: 72 AKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPMT 131
Query: 137 ----QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 192
++ AT + VE+F DLLVNITKH L PKH +L+D+EK++LL++Y ++
Sbjct: 132 GMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLK 191
Query: 193 EKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+ QLPR+ D +A+Y GL RG VVK+ E + +YR V
Sbjct: 192 QTQLPRIQSTDPVAKYLGLRRGSVVKIIRKSETAGRYASYRWV 234
>gi|330803783|ref|XP_003289882.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325080041|gb|EGC33614.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 196
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 117/205 (57%), Gaps = 18/205 (8%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
D +R R+TV++ML DRGY S I+ V R I +D L+I + DP++
Sbjct: 3 DPVRLTQIRKTVIQMLSDRGYIT--SAIDAEVP--RDITNRD----ELKIYCVKKDDPTE 54
Query: 98 RILVVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLFQFK-- 152
+ V F P + KV V I+ + + +R T +I++ QN IT A +A V + Q K
Sbjct: 55 SVYVFF--PEVPKVGVTHIKKYVELMKSRQTNRAIIVVQQN-ITPFAKQALVEISQDKKI 111
Query: 153 -VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F +LLVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D IA+Y+GL
Sbjct: 112 VLEQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQLNDPIARYFGL 171
Query: 212 ERGQVVKVTYSGEITESHVTYR-CV 235
RG VVK+ E ++TYR CV
Sbjct: 172 ARGNVVKIVRPSETAGRYITYRLCV 196
>gi|339233930|ref|XP_003382082.1| retinol dehydrogenase 12 [Trichinella spiralis]
gi|316979012|gb|EFV61880.1| retinol dehydrogenase 12 [Trichinella spiralis]
Length = 508
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 110/192 (57%), Gaps = 8/192 (4%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISH 91
R+ R + R+ +M +DRG+ V E++ + +DF YG P + L +SH
Sbjct: 6 REIFRLWKIRQNAFQMCRDRGFLVTSYELDQNFEDFVRQYGDRPSEGKPARSDLSFLVSH 65
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-- 149
+ D ++ + V F V + I+++ ++ + ++ I+I+Q +T+ A +V
Sbjct: 66 EEDAAENLFVYFADERKVGIKTIKNVCLRL-QSENMSRAIMIVQEPMTAIARHSVADLSP 124
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
++K+E F +L+VNI +H L P+H +++ +EK++LL +Y I+E QLPR+ D +A+YY
Sbjct: 125 KYKLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQLPRIQSTDPVARYY 184
Query: 210 GLERGQVVKVTY 221
G+ RGQ+ ++
Sbjct: 185 GVVRGQLYLFSF 196
>gi|212533613|ref|XP_002146963.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072327|gb|EEA26416.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 236
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 37/225 (16%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI-------- 89
R + + RTV EML+DRGY ++ E+ + +QDF + P +R+ I+
Sbjct: 18 RLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIPSEAMKA 77
Query: 90 ------SHQSDPSK-----RILVVFC----GPGIVKVNVIRSIISQIVNRDTLTGLILIL 134
+DP +I V FC G G +V + +V+ I I
Sbjct: 78 KYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQF----NHLVDEGNYHSGIFIT 133
Query: 135 QNQITSQATK----AVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ I+ A + A+G E FQ +DLLVNIT H L PKH +L+ +EK +LL++Y
Sbjct: 134 RTAISPSAVRLLNSAIGHI---CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 191 LKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|403223518|dbj|BAM41648.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 205
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 11/202 (5%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR---ISISHQSDPSK 97
R + RRT EML+DRGY + E + +F+A Y D++R + ++ Q S
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPGKERLETFAEFKARYEL---YDKMRSKMLLVASQKTASD 63
Query: 98 RILVVFCGPGIVKVNV--IRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKV 153
L+V+ K V IR + ++ + D + IL+ +N +T A A+ + +
Sbjct: 64 NKLLVYFADETRKTGVKPIRELTERMEDHD-IHRAILVTRNVLTPFAKDAIMEAYPRNII 122
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F T+LLVNIT+H L PKH LT EK+ LL+KY ++E Q+PR+ D +A+Y+GL +
Sbjct: 123 ENFMETELLVNITRHELVPKHIPLTMDEKQNLLQKYKVKESQIPRIQSADPVARYFGLSK 182
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
GQVVK+ E +VT+R V
Sbjct: 183 GQVVKIIRPSETAGRYVTFRLV 204
>gi|182676597|sp|Q54EH2.2|RPAB1_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 197
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TVL+ML DR Y + E + F + + L + + DP+ I V F
Sbjct: 11 RKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPD 63
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF----QFKVEMFQITDL 161
V V I+ + + +R +I++ QN IT A +A+ F + +E F +L
Sbjct: 64 TPKVGVTQIKKYVDIMKDRQANRAIIVVQQN-ITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
LVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D +A+YYGL RG VVK+
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVR 182
Query: 222 SGEITESHVTYR-CV 235
E ++TYR CV
Sbjct: 183 PSETAGRYITYRLCV 197
>gi|242778512|ref|XP_002479254.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
gi|218722873|gb|EED22291.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
Length = 236
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 37/225 (16%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI-------- 89
R + + RTV EML+DRGY ++ E+ + QDF +G + P ++ I+
Sbjct: 18 RLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMPSEAMKA 77
Query: 90 ------SHQSDPSK-----RILVVFC----GPGIVKVNVIRSIISQIVNRDTLTGLILIL 134
SDP I V FC G G +V + +V+ I I
Sbjct: 78 KYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAF----NHLVDEGNYHSGIFIT 133
Query: 135 QNQITSQATK----AVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ I+ A + AVG E FQ +DLLVNIT H L PKH +L+ +EK +LL++Y
Sbjct: 134 RTAISPSAMRLLSSAVGHI---CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
++E QLPR+ D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 191 LKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235
>gi|440634485|gb|ELR04404.1| hypothetical protein GMDG_01480 [Geomyces destructans 20631-21]
Length = 236
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 25/227 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRI----- 87
D R+ R + + RTV +M+ DRGY + E+++S+ +F+ + D DR ++
Sbjct: 11 DIADREVARLWRAWRTVHQMVNDRGYELNEDELSISLAEFKHRFTNDGVPDRKKMIFTAR 70
Query: 88 ------------SISHQSDPSKR----ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLI 131
+ + +P K I + F V + +RS +Q++++ I
Sbjct: 71 PSVEMVARYSTPATAANPNPPKADVGTIYIEFLADTNVGIKQMRSF-AQVLSQGNFHTGI 129
Query: 132 LILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189
L+ IT A K V + ++E F DLLVNIT H L PKH +L+ +E+ KLL++Y
Sbjct: 130 LVTHVHITPAAMKIVPAVASETRIECFLEQDLLVNITHHELVPKHVLLSKEERSKLLQRY 189
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
+++ QLPR+ D +A+Y GL RGQVVK+ + E + +YR CV
Sbjct: 190 RLKDTQLPRIQVGDPVARYLGLRRGQVVKIIRTSETAGRYASYRLCV 236
>gi|300175741|emb|CBK21284.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 112/196 (57%), Gaps = 3/196 (1%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
+++R+ ++M+ RGY + +++ F + +G +PD + L + S+ + L++
Sbjct: 12 FIARKNAIKMMTKRGYVLRMTDDMTKYDAFLSRFGNEPDYESLSVIGKRLSNKNDGCLLI 71
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITD 160
F + IR II Q+ ++ ++ I++++N+I S A A F+ F +++F+ +
Sbjct: 72 FNDSPSLGAPAIREIIEQL-EKENISSAIIVVKNRIPSTAKHACKKFEPIFHLDLFKESS 130
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
LLV+IT+H L P H L++QE ++LL++ SI +LP++ D I YYG ++GQV+K+
Sbjct: 131 LLVDITEHFLVPPHIALSEQETKELLERLSIPADKLPKISVDDPICHYYGFKQGQVIKII 190
Query: 221 YSGEITESHVTYRCVW 236
+ + V +R V
Sbjct: 191 RNSLVGGRSVAFRVVM 206
>gi|397611881|gb|EJK61509.1| hypothetical protein THAOC_17988 [Thalassiosira oceanica]
Length = 581
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 8/165 (4%)
Query: 76 YGQDPD-----VDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGL 130
+G+ PD V L S D + ++ V F V V I+ I++ + + +T
Sbjct: 415 FGKRPDGQFITVQVLTYSQEKADDDTNQLFVFFPEDEKVGVKPIK-ILTDRMKDEQVTNA 473
Query: 131 ILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
IL+L+ IT A +AV F++E F+ +LLV+IT+H L P+HQVL+ EK++LL++
Sbjct: 474 ILVLRGNITPFAKQAVAEMSDTFRIEHFKEAELLVDITEHTLVPEHQVLSQNEKQELLRR 533
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
Y + E QLPR+ D +A+YYG++RGQVVK+ E +VTYR
Sbjct: 534 YRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 578
>gi|389628590|ref|XP_003711948.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351644280|gb|EHA52141.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
Length = 230
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 34/226 (15%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQS 93
G+R R + RT+ +ML DRGY ++ E N+S++ F A + + +VD+ +++ S +
Sbjct: 9 GARKLWRAW---RTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFS--A 63
Query: 94 DPSKRILVVF--------------CGPGIV------KVNVIRSIISQIVNRDTLTGL--- 130
PS +L + CG V K+ V R+ Q V +G
Sbjct: 64 RPSDAMLKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRT--KQFVEVLLQSGFRDG 121
Query: 131 ILILQNQITSQATKAV---GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
IL+ Q ++S A +A+ G KVE F + DLLVNIT H L PKH +L+ EK+ LL+
Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+Y ++E QLPR+ KD +A+Y GL+RG VVK+ E + +YR
Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227
>gi|322700991|gb|EFY92743.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 250
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 45/246 (18%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRG------------------YAVALSEINLSVQDFRA 74
D S++ +R + + RTV EM+ DR Y +A E+N+S+ FR
Sbjct: 7 DAKSKEVVRLWRAWRTVHEMVADRPCDHIRPTRPPQTDPFIQEYELAEEEVNISLDRFRD 66
Query: 75 IYGQDPDVDRLRISISHQSDPSKRIL--------------VVFCGPGIVK--------VN 112
Y +PD R + + PS +L + CGP V+ V
Sbjct: 67 EYC-NPDGSVNRSKLQFSARPSDAMLKKNTPPATESNPDPIPDCGPVWVEFLTDKQFGVG 125
Query: 113 VIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVL 170
IR ++ + TG I++ ++ A K++ + K+E F DLLVNIT H L
Sbjct: 126 QIRQFAKYTISNNYKTG-IMVTHVPLSPAARKSLASVENLAKIECFLEDDLLVNITHHEL 184
Query: 171 KPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHV 230
P+H +L+ EK LLK+Y ++E QLPR+L+KD +A+Y GL+RGQVVK+ E +
Sbjct: 185 VPRHVLLSRDEKSALLKRYRLKETQLPRILQKDPVARYLGLKRGQVVKIIRVSETAGRYA 244
Query: 231 TYR-CV 235
+YR CV
Sbjct: 245 SYRLCV 250
>gi|440470981|gb|ELQ40020.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440484880|gb|ELQ64891.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 259
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 34/226 (15%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-DPDVDRLRISISHQS 93
G+R R + RT+ +ML DRGY ++ E N+S++ F A + + +VD+ +++ S +
Sbjct: 9 GARKLWRAW---RTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFS--A 63
Query: 94 DPSKRILVVF--------------CGPGIV------KVNVIRSIISQIVNRDTLTGL--- 130
PS +L + CG V K+ V R+ Q V +G
Sbjct: 64 RPSDAMLKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRT--KQFVEVLLQSGFRDG 121
Query: 131 ILILQNQITSQATKAV---GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
IL+ Q ++S A +A+ G KVE F + DLLVNIT H L PKH +L+ EK+ LL+
Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181
Query: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+Y ++E QLPR+ KD +A+Y GL+RG VVK+ E + +YR
Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227
>gi|281202322|gb|EFA76527.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 288
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 32/222 (14%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y ++T+L+ML DRGY + +++ S +FR + D++ + + + D + +I
Sbjct: 6 RLYQIQKTILQMLHDRGYMITPVQLDQSKDEFRRNFKSREDMNSIH---TKREDAADKIF 62
Query: 101 VVFCGPGIVKVNVIRSIISQIV---NRDTL----------------------TGLILILQ 135
+ F V V I+ +IS ++ N ++ T I+++Q
Sbjct: 63 IFFPNDPKVGVKPIKEVISTLIKPTNHLSIYLSTHNQTNTYRYVKRMKEIGGTRAIIVVQ 122
Query: 136 NQITSQATKAVGLF----QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
+T A +A+ F + +E F +LLVNIT H L PKH +L+ +EK +LL KY +
Sbjct: 123 QVMTPFAKQALAEFSQNREIVLENFNEAELLVNITHHQLVPKHILLSKEEKSELLAKYKM 182
Query: 192 EEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+E QLPR+ D +A+Y+GL RG VVK+ E ++TYR
Sbjct: 183 KETQLPRIQINDPVARYFGLRRGHVVKIIRPSETAGRYITYR 224
>gi|452981679|gb|EME81439.1| hypothetical protein MYCFIDRAFT_70882 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 25/224 (11%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQ 92
D SR+ R + RT +M DRGY + E N+S+++FR Y + R+ ++
Sbjct: 3 DENSRELSRLWRVLRTTKQMCSDRGYELTDEECNISLEEFRQQYADESGAPS-RVKMAFT 61
Query: 93 SDPSKRIL----------------------VVFCGPGIVKVNVIRSIISQIVNRDTLTGL 130
+ PS ++ V F + + ++ S + +++ TG
Sbjct: 62 ARPSDAMIKKYTPIQRPGQDEKPPEIGTIHVEFSNDASIGIKQLKQFASNLADKNYYTG- 120
Query: 131 ILILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189
I + Q Q TS A K + + +E+F+ DLLVNI++H L PKH +L+ +EK LL++Y
Sbjct: 121 IYVSQVQPTSAALKIIPSVHPLIMEIFKEDDLLVNISRHELVPKHILLSQEEKRGLLERY 180
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++E QLPR+ D +A+Y GL R QVVK+ E + +YR
Sbjct: 181 RLKETQLPRIRIDDPMARYLGLRRAQVVKIIRKSETAGRYASYR 224
>gi|156061727|ref|XP_001596786.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980]
gi|154700410|gb|EDO00149.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 242
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 29/231 (12%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISH 91
D R++ + + RTV EM++DRGY +A E+N+S F+A + D VDR +++ S
Sbjct: 13 DGIDREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFS- 71
Query: 92 QSDPSKRILVVFC-GPGIVKVNVIRSII-----------------------SQIVNRDTL 127
+ PS+ ++ + P N S I +Q +++
Sbjct: 72 -ATPSEAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNF 130
Query: 128 TGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+ ILI + A K + ++E F DLLVNIT H L PKH +L+ +E+ KL
Sbjct: 131 SAGILIAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKL 190
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
L +Y +++ QLPR+ D +A+Y GL RGQVVK+ E + +YR +
Sbjct: 191 LSRYRLKDTQLPRIQAADPVAKYLGLRRGQVVKIIRKSETAGRYASYRLAF 241
>gi|396500613|ref|XP_003845762.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
gi|312222343|emb|CBY02283.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
Length = 412
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 27/214 (12%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D S +R + RT EM++DRGY V + +S+ +F + +G++ PD RL S
Sbjct: 4 DKASPSIIRLWRVWRTAKEMMRDRGYMVLEEDTTMSLAEFTSKFGREDGEPDRSRLNFSC 63
Query: 90 --------SHQSDPSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLI 131
+ P+K+ I V F V + +R + ++N + +G++
Sbjct: 64 LPSEEMLAKYTPAPTKKDPNPVPQIGSIWVEFNSDENVGLKQLRDYMGHLLNGNFYSGVM 123
Query: 132 LILQN------QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+ +Q ++ AT + VE+F DLLVNITKH L PKH +L+ +EK++L
Sbjct: 124 ITVQAMTGMAIRLLRGATSMSDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSAEEKQQL 183
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
LK+Y ++E QLPR+ D +A+Y GL RG VVK+
Sbjct: 184 LKRYRLKETQLPRIQSTDPVAKYLGLRRGSVVKI 217
>gi|154411936|ref|XP_001579002.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121913204|gb|EAY18016.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 202
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 113/204 (55%), Gaps = 19/204 (9%)
Query: 42 YYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILV 101
Y+ T+ +M++DRGY V S + +S F +Y +P ++ + + +RIL
Sbjct: 9 YFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPH----NLNECYSNMEGERILT 64
Query: 102 VFCGPGIVKVNVIRSIISQI----VNRDTLTGLILILQNQITSQATKAVGLFQFK----- 152
F + I++II + VNR + G IL T A L +
Sbjct: 65 FFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILT------PTAARNLDNVRSSGKT 118
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E F ++++NIT+H L PKH+VLT+ EK+++LK+Y++ E QLPR+L+ D +++Y G++
Sbjct: 119 IEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVK 178
Query: 213 RGQVVKVTYSGEITESHVTYRCVW 236
GQ++K+T + + +VTYR V+
Sbjct: 179 PGQLLKITRNSDTAGHYVTYRLVY 202
>gi|154292350|ref|XP_001546750.1| hypothetical protein BC1G_14664 [Botryotinia fuckeliana B05.10]
Length = 242
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 29/231 (12%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISISH 91
D R++ + + RTV EM++DRGY +A E+N+S F++ + D VDR +++ S
Sbjct: 13 DGIDREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFS- 71
Query: 92 QSDPSKRILVVFC-GPGIVKVNVIRSII-----------------------SQIVNRDTL 127
+ PS+ ++ + P N S I +Q +++
Sbjct: 72 -ATPSEAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNF 130
Query: 128 TGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185
+ ILI + A K + + ++E F DLLVNIT H L PKH +L+ +E+ KL
Sbjct: 131 SAGILIAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKL 190
Query: 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
L +Y +++ QLPR+ D +A+Y GL RGQVVK+ E + +YR +
Sbjct: 191 LSRYRLKDTQLPRIQAADPVAKYLGLRRGQVVKIIRKSETAGRYASYRLAF 241
>gi|260943051|ref|XP_002615824.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238851114|gb|EEQ40578.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 287
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 10/188 (5%)
Query: 55 DRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK--------RILVVFCGP 106
D GY + EIN+++ +F+A + R + Q P + V FC
Sbjct: 98 DIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKFPEMGSLWVEFCDE 157
Query: 107 GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG-LFQFKVEMFQITDLLVNI 165
V + +R+ I ++ TG I I Q IT A K + + +E+FQ +DL+VNI
Sbjct: 158 ASVGIKTMRNFCIHISEKNFSTG-IFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNI 216
Query: 166 TKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEI 225
T H L PKH L+ EK++LL +Y ++E QLPR+ ++D +A+Y GL+RG VVK+ E
Sbjct: 217 THHELVPKHIRLSKPEKKELLDRYRLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSET 276
Query: 226 TESHVTYR 233
+ + +YR
Sbjct: 277 SGRYASYR 284
>gi|195150967|ref|XP_002016421.1| GL10501 [Drosophila persimilis]
gi|194110268|gb|EDW32311.1| GL10501 [Drosophila persimilis]
Length = 210
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 117/209 (55%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVD-----RLRIS 88
N + + + R+TVL+M DRGY V E++ ++Q F+ I+G P + + +
Sbjct: 2 NDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ ++ +++ I+++QN IT A +A+
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKDIKRYCLRM-QEESIYRAIIVVQNSITPSARQALVE 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +L+ NIT++ P+H V+T EK++LL +Y + E L R+ D ++
Sbjct: 121 MAPKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLRESMLMRIQVNDPVS 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+ GQVVK+ S + +++YR V
Sbjct: 181 RYFGLKPGQVVKIIRSSKTAGRYISYRIV 209
>gi|198457753|ref|XP_002138441.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
gi|198136092|gb|EDY68999.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 119/209 (56%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVD---RLRIS-- 88
N + + + R+TVL+M DRGY V E++ ++Q F+ I+G P + R I+
Sbjct: 2 NDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F V + I+ ++ +++ I+++QN IT A +A+
Sbjct: 62 VAHNDDPTDQMFVFFPQEPKVGIKDIKRYCLRM-QEESIYRAIIVVQNSITPSARQALVE 120
Query: 149 F--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +L+ NIT++ P+H V+T EK++LL +Y ++E L R+ D ++
Sbjct: 121 MAPKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLKESMLMRIQVNDPVS 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+GL+ GQVVK+ S + +++YR V
Sbjct: 181 RYFGLKPGQVVKIIRSSKSAGRYISYRIV 209
>gi|402467370|gb|EJW02677.1| hypothetical protein EDEG_02909 [Edhazardia aedis USNM 41457]
Length = 200
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 113/194 (58%), Gaps = 4/194 (2%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD-PDVDRLRISISHQSDPSKRILV 101
+L R TV+EML+DRGY + +LS+Q+F Y D +++ + H S +++++
Sbjct: 9 HLCRETVIEMLQDRGYISNRTTKSLSLQEFMHEYSNALQDRSTIKMLVLH-SKTNEQLVC 67
Query: 102 VFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDL 161
F V + ++ I I+++ + ++L+ + ++ K V F+ VE+F+ +L
Sbjct: 68 HFFDEAKVGLKALKLTIEGILSQK-IENVVLVCKEGLSPAGAKFVAEFK-NVEVFKEKEL 125
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
L N+TKH+L PKH++L +EK KLL+ I+E QLPRML D IA+++G +RG V ++
Sbjct: 126 LFNVTKHMLVPKHRILEYEEKCKLLECRRIKESQLPRMLITDRIARHFGAKRGDVFEIVR 185
Query: 222 SGEITESHVTYRCV 235
S E + YR V
Sbjct: 186 SSETAGESLYYRIV 199
>gi|401882166|gb|EJT46437.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406701349|gb|EKD04497.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 195
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SH 91
+ R+ R + +TV EM++DRGY VA EIN+S DF+ YG VDR R++ +H
Sbjct: 4 DSDRELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANH 63
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ- 150
D RI V FC V +S ++ + GLI + ++TS A K Q
Sbjct: 64 SRDSRDRIYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLI-VHGGKLTSGAAKTQNEMQS 122
Query: 151 -FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI 191
+ +E F+ DLLVNIT+H L PKH ++ +EK L+K+Y++
Sbjct: 123 EYHLEDFKEADLLVNITRHFLVPKHTIMEPEEKSALIKRYAM 164
>gi|380800089|gb|AFE71920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Macaca mulatta]
Length = 181
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 105/179 (58%), Gaps = 8/179 (4%)
Query: 64 EINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRILVVFCGPGIVKVNVIRSII 118
E++ ++++F+A +G P R R + ++H DP+ ++ V F V + I+ +
Sbjct: 3 ELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VY 61
Query: 119 SQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQV 176
Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H V
Sbjct: 62 CQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVV 121
Query: 177 LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 122 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 180
>gi|452840713|gb|EME42651.1| hypothetical protein DOTSEDRAFT_73472 [Dothistroma septosporum
NZE10]
Length = 228
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISI 89
D SR+ R + RT +M DRGY + E N+S+ DFR Y + P R+ +
Sbjct: 4 DEVSRELSRLWRVLRTTKQMCADRGYELTEEECNISLDDFRQQYADETGAPQRTRMAFTA 63
Query: 90 SHQSDPSKR------------------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLI 131
+ K+ I V F + + I+ + ++ TG I
Sbjct: 64 RPSENMQKKYMPLQRPGQSEGEPAIGTIHVEFSNDANIGIKHIKQFAQVLSEKNYYTG-I 122
Query: 132 LILQNQITSQATKAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS 190
+ T A K + + +E+F+ DLLVNI+KH L PKH +L+ +EK+ LL++Y
Sbjct: 123 FVSAVAPTPAAMKIIPSILPTVMEIFREEDLLVNISKHELVPKHVLLSPEEKKGLLERYR 182
Query: 191 IEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
++E QLPR+ D +A+Y GL RGQVVK+ E + +YR C+
Sbjct: 183 LKETQLPRIRWDDPMAKYLGLRRGQVVKIIRKSETAGRYASYRWCI 228
>gi|398396120|ref|XP_003851518.1| hypothetical protein MYCGRDRAFT_43980, partial [Zymoseptoria
tritici IPO323]
gi|339471398|gb|EGP86494.1| hypothetical protein MYCGRDRAFT_43980 [Zymoseptoria tritici IPO323]
Length = 218
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 25/210 (11%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL------ 100
RT +M DRGY + +E N+S+++FR++Y + V + R ++ + PS ++
Sbjct: 8 RTTKQMCADRGYELTEAECNISLEEFRSLYADESGVPQ-RTKMAFTARPSAAMIKKYTPF 66
Query: 101 ----------------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
V F + + I++ + ++ TG I + Q TS A K
Sbjct: 67 TRPNQPEKEAEIGNIHVEFSNESNIGIKHIKNFAQLLSEKNYYTG-IFVTQVAPTSAALK 125
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
+ + +E+F+ DLLVNI+KH L PKH +L+ +EK LL++Y ++E QLPR+ D
Sbjct: 126 IIPSVLPTVMEIFREEDLLVNISKHDLVPKHILLSQEEKRGLLERYRLKETQLPRIRVDD 185
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A+Y GL R QVVK+ E + +YR
Sbjct: 186 PMARYLGLRRSQVVKIIRKSETAGRYASYR 215
>gi|389749829|gb|EIM91000.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 175
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 33/191 (17%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP-DVDRLRISISHQSDPSKRILVVFCG 105
RT+ E++KDRGY VA EI++ + F + Y VDR +++ +
Sbjct: 17 RTIQELVKDRGYQVADDEIHMDLSTFESHYANSAGSVDRNQLNF---------FTNLRVN 67
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNI 165
P I K D +G+I I +T A K VE F DLLV I
Sbjct: 68 PQIFK--------------DIRSGVI-IFPGIMTPSARK--------VEEFAEADLLVYI 104
Query: 166 TKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEI 225
T H L P+H VLT +EK+ +L++Y ++E QLPR+ D IA+YYGL RGQVVK+T E
Sbjct: 105 THHKLVPRHDVLTPEEKKMVLERYHLKETQLPRIQPADPIARYYGLRRGQVVKITRPSET 164
Query: 226 TESHVTYRCVW 236
+ + +YR +
Sbjct: 165 SGRYASYRICF 175
>gi|156396586|ref|XP_001637474.1| predicted protein [Nematostella vectensis]
gi|156224586|gb|EDO45411.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 116/204 (56%), Gaps = 11/204 (5%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQS 93
+ +++ R+TV+++ + E++ +++ F+ +G P R L I ++H
Sbjct: 7 TYKFWRIRKTVMQVCNG---LILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHND 63
Query: 94 DPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQF 151
DP+ ++ V F V + I+ Q + + ++ ++++Q +T A +A+ ++
Sbjct: 64 DPTDQMFVFFPEEPKVGIKTIKQY-CQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKY 122
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
+E F +L++NIT+H L P+H ++T EK++LL +Y ++E QLPR+ D +A+Y+GL
Sbjct: 123 ILEQFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGL 182
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
+RGQVVK+ E ++TYR V
Sbjct: 183 KRGQVVKIIRPSETAGRYITYRLV 206
>gi|242082576|ref|XP_002441713.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
gi|241942406|gb|EES15551.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
Length = 274
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 60/81 (74%)
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
+F + LVNITKHVLKPKH+VLT +EK KL K Y++ + LP ML+ DA+A Y G +G
Sbjct: 193 LFNVRSRLVNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQG 252
Query: 215 QVVKVTYSGEITESHVTYRCV 235
VVKVTY E+T +HVTYRC+
Sbjct: 253 TVVKVTYDNELTGNHVTYRCI 273
>gi|326430754|gb|EGD76324.1| hypothetical protein PTSG_01026 [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 15/206 (7%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH-----Q 92
D + Y + +M DRGY V + + + ++G D++R +S+
Sbjct: 5 DRFKVYKAWVVSKQMCHDRGYLVTQDMMEMPYDRWEEMHG-----DKIRRELSYYVRKDS 59
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-- 150
DP+ +LV F V +I+S+ +I ++ +I++ + ++ A KA+ + +
Sbjct: 60 GDPTG-LLVYFPVEPDVSTVLIKSLHERITKENS-KRVIIVYRGKLAGAARKAMEVLKDS 117
Query: 151 -FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
F E+F +L +N+T+H L PKH VLT+ EK++LL +YSI +LP M + D IA+Y+
Sbjct: 118 GFVFEVFTEAELAINVTRHRLVPKHDVLTEAEKQQLLDRYSITPDKLPIMQEVDPIARYF 177
Query: 210 GLERGQVVKVTYSGEITESHVTYRCV 235
GL GQVV++T + E +VTYR V
Sbjct: 178 GLSHGQVVRITRTSETAGRYVTYRIV 203
>gi|167516220|ref|XP_001742451.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779075|gb|EDQ92689.1| predicted protein [Monosiga brevicollis MX1]
Length = 210
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 104/193 (53%), Gaps = 7/193 (3%)
Query: 48 TVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPG 107
T+ +M DRG+ V +N++ + IYG+ P + L + D + + V F
Sbjct: 16 TLKQMCHDRGFRVTQEMMNMTFDTWNEIYGEYPRKE-LSFPVQKVDDDNDGLFVFFPESP 74
Query: 108 IVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-----QFKVEMFQITDLL 162
VKV I+S+ ++ D L I++ Q ++ A + + + VE F +L+
Sbjct: 75 DVKVAAIKSLYDRL-KSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVETFAEAELV 133
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
N+T+H L P H++L + EK++LL++Y + E +LP++ D + +Y+G ++GQV+++ S
Sbjct: 134 YNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQVLRIVRS 193
Query: 223 GEITESHVTYRCV 235
+ +VTYR V
Sbjct: 194 SQTAGRYVTYRIV 206
>gi|66802850|ref|XP_635268.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|60463617|gb|EAL61802.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 181
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 13/189 (6%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKV 111
ML DR Y + E + F + + L + + DP+ I V F V V
Sbjct: 1 MLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53
Query: 112 NVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF----QFKVEMFQITDLLVNITK 167
I+ + + +R +I++ QN IT A +A+ F + +E F +LLVNIT
Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQN-ITPFAKQALAEFSQEKKITLEQFNEAELLVNITH 112
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH +LT +EK +LL +Y ++E QLPR+ D +A+YYGL RG VVK+ E
Sbjct: 113 HQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAG 172
Query: 228 SHVTYR-CV 235
++TYR CV
Sbjct: 173 RYITYRLCV 181
>gi|116785870|gb|ABK23892.1| unknown [Picea sitchensis]
Length = 191
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 96/153 (62%), Gaps = 3/153 (1%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
RRTVL+ML DR Y V EIN + + F +G+DP + L I+ + ++ PS++I V F
Sbjct: 14 RRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSEQIFVFFPE 73
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLV 163
V V I++ + ++ + IL++Q +T A ++V F +F +E+FQ +LLV
Sbjct: 74 EAKVGVKSIKTYVERMKSEGVFRA-ILVVQQALTPFARQSVQEFSGKFHLEVFQEAELLV 132
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
NI +HVL P+ Q+LT +EK+ LL++Y+++E Q+
Sbjct: 133 NIKEHVLVPEQQILTPEEKKTLLERYTLKETQV 165
>gi|149239546|ref|XP_001525649.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451142|gb|EDK45398.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 179
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKVEMFQ 157
+ V FC V + +R+ I ++ G I I QN IT A K + Q +E FQ
Sbjct: 42 LWVEFCDEPSVGIKTMRNFCIHISEKNFQVG-IFIYQNSITPSANKLIPTVQPASIETFQ 100
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
TDL+VNIT H L PKH L +EK++LL++Y ++E QLPR+ ++D +A+Y GL+RG+VV
Sbjct: 101 ETDLIVNITHHELVPKHIKLNREEKKELLERYRLKESQLPRIQREDPVARYLGLKRGEVV 160
Query: 218 KVTYSGEITESHVTYR 233
K+ E + + +YR
Sbjct: 161 KIIRRSETSGRYASYR 176
>gi|169600143|ref|XP_001793494.1| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
gi|160705387|gb|EAT89631.2| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
Length = 277
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 32/243 (13%)
Query: 23 PTESCLSGFVDNGSRDSL-RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDP 80
P C + + + SL R + RT EM+ +RGY V E+ +S++ F Y +D
Sbjct: 36 PLAHCPTTMDEPRYQPSLIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYAREDG 95
Query: 81 DVDRLRISISHQSDPSKRILVVFCG-PGIVKVNVIRSI--ISQIVNRDTLTGL------- 130
+ DR R++ S S PS+ +L+ + P + N + +I I N D GL
Sbjct: 96 EPDRSRLNFS--STPSEEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFM 153
Query: 131 -----------ILILQNQITSQATKAV-GLFQFK------VEMFQITDLLVNITKHVLKP 172
I++ IT A + + G +E+F DLLVNITKH L P
Sbjct: 154 NHLGSGSFYSGIMVTVKPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVP 213
Query: 173 KHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTY 232
KH +L+ +EK +LL +Y ++E QLPR+ D +A++ GL RG VVK+ E + +Y
Sbjct: 214 KHVLLSAEEKAQLLTRYRLKETQLPRIQSTDPVAKFLGLRRGSVVKIIRKSETAGRYASY 273
Query: 233 RCV 235
R V
Sbjct: 274 RWV 276
>gi|146418140|ref|XP_001485036.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
gi|146390509|gb|EDK38667.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 179
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG-LFQFKVEMFQ 157
+ V FC V + +R+ I ++ TG I I QN IT A K V + +E FQ
Sbjct: 42 LWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQNSITPSANKLVPTVAPASIETFQ 100
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
+DL+VNIT H L PKH L+ EK++LL +Y ++E QLPR+ ++D +A+Y GL+RG+VV
Sbjct: 101 ESDLIVNITHHDLVPKHIKLSIGEKKELLARYRLKESQLPRIQREDPVARYLGLKRGEVV 160
Query: 218 KVTYSGEITESHVTYR 233
K+ E + + +YR
Sbjct: 161 KIIRRSETSGRYASYR 176
>gi|68489026|ref|XP_711626.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
gi|68489167|ref|XP_711558.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432871|gb|EAK92334.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432944|gb|EAK92404.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
Length = 179
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKVEMFQ 157
+ V FC V + +R+ I ++ TG I I QN +T A K + +E+FQ
Sbjct: 42 LWVEFCDEASVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQ 100
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
DL+VNIT H L PKH L +EK++LL +Y ++E QLPR+ ++D +A+Y GL+RG++V
Sbjct: 101 ENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIV 160
Query: 218 KVTYSGEITESHVTYR 233
K+ E + + +YR
Sbjct: 161 KIIRRSETSGRYASYR 176
>gi|413952168|gb|AFW84817.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 238
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R Y RRTV++ML+DRGY V E+ S +DF +G+ + L I+ ++DPS +I
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQI 158
V F V + I+ + +++ + ++ +L+LQ +T A + + K+ E+FQ
Sbjct: 74 VFFPNDDKVGMKHIKKYV-EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPR 198
++L+NI +HVL P+HQVLT++EK+ LL++Y+++E Q+ R
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQVLR 172
>gi|429861288|gb|ELA35981.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 204
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 25/204 (12%)
Query: 56 RGYAVALSEINLSVQDFRAIY--------------GQDPDVDRLR----ISISHQSDPSK 97
+GY +A E+ +S+ F+ Y +P D +R S +P+
Sbjct: 2 QGYELAEEELTISLDRFKMEYTSGDGSVNRGKLQFSANPSADMIRKFTPPPTSQNPNPTP 61
Query: 98 R---ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA-VGLFQF-K 152
+ V F + I+ I +++ +G I++ ++ A K V + F K
Sbjct: 62 ECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSG-IMVTHVPLSPAARKMLVTIESFAK 120
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
VE F DLLVNITKH L P+H +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL+
Sbjct: 121 VECFLEEDLLVNITKHELVPRHILLSREEKIALLKRYRLKETQLPRILQKDPVAKYLGLK 180
Query: 213 RGQVVKVTYSGEITESHVTYR-CV 235
RGQVVK+ + E + +YR CV
Sbjct: 181 RGQVVKIIRNSETAGRYASYRLCV 204
>gi|44890007|emb|CAF32125.1| DNA-directed RNA polymerase, putative [Aspergillus fumigatus]
Length = 220
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 20/215 (9%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALS---------EINLSVQDFRAIYGQDPDVDRL 85
R+ R + + RTV EML DR + L+ ++ +S + A+ +
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPYSRTKMKISARPTAAMQAK-----YT 65
Query: 86 RISISHQSDPSK---RILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
+ DP I V FC V +R+ + V+ + + I Q I+
Sbjct: 66 PLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAF-NHFVDENNFHTGVFITQTPISPS 124
Query: 142 ATKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A + + ++ E FQ DLLVNIT+H L PKH +L+ +EK+ LL++Y ++E QLPR+
Sbjct: 125 AVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 184
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 185 VSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 219
>gi|194693176|gb|ACF80672.1| unknown [Zea mays]
Length = 127
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 120 QIVNRDTLTGLILILQNQITSQATKAVGLFQFKV--EMFQITDLLVNITKHVLKPKHQVL 177
+++ + ++ +L+LQ +T A + + K+ E+FQ ++L+NI +HVL P+HQVL
Sbjct: 9 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 68
Query: 178 TDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
T++EK+ LL++Y+++E QLPR+ D IA+YYGL RGQVVK+ E +VTYR V
Sbjct: 69 TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 126
>gi|225711614|gb|ACO11653.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
rogercresseyi]
Length = 210
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-----QDPDVDRLRISISHQSDPSKRIL 100
R+TV+ + DRGY V E++ ++ F+ +G + P + L I ++H DP+ ++
Sbjct: 14 RKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVAHNDDPTDQMF 73
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F + + IR+ ++ + +T I+++Q+ +T A +++ ++ +E F
Sbjct: 74 VFFPDDPKIGIKHIRTYCKRM-QEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLE 132
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++LL+N+T+H L P+H V+T +EK++LLKKY ++E QL R+ D +A+YYGL+RGQVVK
Sbjct: 133 SELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVK 192
Query: 219 VTYSGEITESHVTYRCV 235
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|116196520|ref|XP_001224072.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
gi|88180771|gb|EAQ88239.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
Length = 220
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 58 YAVALSEINLSVQDFRAIYGQD---PDVDRLRISISHQSDPSKR---------------- 98
Y +A E+ +S+ FR Y D P+ +++ S K+
Sbjct: 19 YELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSNPDPAPEC 78
Query: 99 --ILVVFCG-PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFK-V 153
I V FC + +NV++ + + G IL+ +++QA K + + Q+ +
Sbjct: 79 GTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAG-ILVTAVALSAQARKVMTVTSQYTLI 137
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E F DLLVNIT H L PKH +L+ +EK LLK+Y ++E QLPR+L KD IA+Y GL++
Sbjct: 138 ECFLEEDLLVNITHHELVPKHVLLSREEKTALLKRYRLKETQLPRILSKDPIARYLGLKK 197
Query: 214 GQVVKVTYSGEITESHVTYR-CV 235
GQVVK+ + E + +YR CV
Sbjct: 198 GQVVKIIRTSETAGRYASYRLCV 220
>gi|115492143|ref|XP_001210699.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114197559|gb|EAU39259.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 219
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 29 SGFVDNGSRDSLRYYLSRRTVLEMLKDRGYA--VALSEINLSVQDFRAIYGQDPDVDRLR 86
SG VD R+ R + + RTV EML+DR + L+ + + +A + V
Sbjct: 7 SGSVD-ADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTP 65
Query: 87 ISISHQSDPSK---RILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQA 142
++ QS I V FC V +R+ + + TG I I Q I+ A
Sbjct: 66 LTKQGQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTG-IFITQTPISPSA 124
Query: 143 TKAVGLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLK 201
+ + ++ E FQ DLLVNIT+H L PKH +L+ +EK++LL +Y ++E QLPR+
Sbjct: 125 VRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQV 184
Query: 202 KDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
D +A+Y GL RGQVVK+ E + +YR V
Sbjct: 185 SDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 218
>gi|432101146|gb|ELK29430.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Myotis
davidii]
Length = 203
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 113/209 (54%), Gaps = 15/209 (7%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H + LT+ + + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHESALRGFFLTELPSK-------LRENQLPRIQAGDPVA 173
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 174 RYFGIKRGQVVKIIRPSETAGRYITYRLV 202
>gi|290462657|gb|ADD24376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Lepeophtheirus salmonis]
Length = 210
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-----QDPDVDRLRISISHQSDPSKRIL 100
R+TV+ + DRGY V E++ +++ F+ +G + P + L I ++H DP+ ++
Sbjct: 14 RKTVMCLCHDRGYLVTQDELDQTIEQFKIQFGDKPSEKQPSRNDLTILVAHNDDPTDQMF 73
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQI 158
V F + + IR+ ++ + +T I+++Q +T A +++ ++ +E F
Sbjct: 74 VFFPEDPKIGIKHIRTYCKRM-QEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLE 132
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++LL+N+T+H L P+H V+T +EK++LLKKY ++E QL R+ D +A+YYGL+RGQVVK
Sbjct: 133 SELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVK 192
Query: 219 VTYSGEITESHVTYRCV 235
+ E +++YR V
Sbjct: 193 IIRPSETAGRYISYRLV 209
>gi|225718552|gb|ACO15122.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
clemensi]
Length = 210
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 121/205 (59%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-----QDPDVDRLRISISHQ 92
++ + + R+TV+ + DRGY V E++ + F+ +G + P + L I ++H
Sbjct: 6 ETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVAHN 65
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + V IR+ ++ + +T I+++Q +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEDPKIGVKHIRTYCKRM-QEENITRAIIVVQAGMTPSAKQSLMDMAPK 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F ++LL+N+T+H L P+H V+T +EK++LLKKY ++E QL R+ D +A+YYG
Sbjct: 125 YILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQAGDPVARYYG 184
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L+RGQVVK+ E +++YR V
Sbjct: 185 LKRGQVVKIIRPSETAGRYISYRLV 209
>gi|414586667|tpg|DAA37238.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 117
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 79/115 (68%), Gaps = 3/115 (2%)
Query: 123 NRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPKHQVLTDQ 180
N + G IL++Q +++ A AV ++ +E+FQ +LLVNI HVL P+H +LT +
Sbjct: 3 NENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVNIKDHVLVPEHVLLTPE 61
Query: 181 EKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+K+ LL++Y+++E QLPR+ D IA+YYG++RGQVVK+T + E ++TYR V
Sbjct: 62 DKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRASETAGRYITYRYV 116
>gi|440494631|gb|ELQ76996.1| RNA polymerase, 25-kDa subunit (common to polymerases I, II and
III) [Trachipleistophora hominis]
Length = 197
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 108/195 (55%), Gaps = 12/195 (6%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP----DVDRLRISISHQSDPSKR 98
YL R+TVLEML DRGY+V ++N D+ + P D LRI + Q D +
Sbjct: 8 YLVRKTVLEMLSDRGYSVKEYQVN----DYDDFVNKYPNCVKDTTNLRIIV--QKD-KEM 60
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQI 158
+ V F + + ++ I+ + + + + LIL+L+ I+ A K + +F+
Sbjct: 61 LFVFFSDEEKMSLKSVK-ILVENMEKQNIKNLILVLREGISPAANKFALECPMNITIFKE 119
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
+LL N+TKH L KH++++ +EKE+L+ + I+E+Q+PR+L D +A+Y G +G V++
Sbjct: 120 KELLFNVTKHSLVFKHRIISVEEKERLMDEKKIKEEQMPRILITDPVAKYLGARKGDVLE 179
Query: 219 VTYSGEITESHVTYR 233
+ E S + +R
Sbjct: 180 IERESETAGSALYWR 194
>gi|215713497|dbj|BAG94634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
++ R + RRTV++ML+DRGY V +I+L DF A +G D D L S + + +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEM 155
+I V F V IRS + ++ G IL++Q +++ A AV +F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRSYVERMKQESVFNG-ILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
FQ +LLVNI H L P+H++LT ++K+ LL++Y+++E Q+
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165
>gi|449273017|gb|EMC82646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Columba livia]
Length = 168
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Query: 76 YGQDPDVDRLR-----ISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGL 130
+G P R R + ++H DP+ ++ V F V + I+ + Q + + +T
Sbjct: 2 FGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRA 60
Query: 131 ILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
++++Q +T A +++ ++ +E F +LL+NIT+H L P+H V+T +E +LL +
Sbjct: 61 LIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 120
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 121 YKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 167
>gi|340057896|emb|CCC52248.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma vivax
Y486]
Length = 308
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 13/203 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG-QDPDV---DRLRISISHQSDPS 96
R + RTV EM++DR Y +A + I SV+ FR Y Q + +R+ + P
Sbjct: 106 RMFRVMRTVGEMMRDRKYNIACNVIPESVEQFREWYTDQHSNAILRERMTVPCERVCGPQ 165
Query: 97 KRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV------GLFQ 150
+ +VF G+ V + I++ N D LI++ ++ + + V G+
Sbjct: 166 RSRAMVFFSQGLGMEAVKQYIMT--ANSDNCDRLIIVTSGKVNATVKRHVDDVNRTGV-A 222
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
K+++F DL+VNIT H L PKH L ++E++++L+ +S+E+ LPR+L D +A Y G
Sbjct: 223 LKIQLFDEDDLVVNITHHELVPKHTQLEEEEEKEMLQSHSLEKSMLPRILSTDPVAAYLG 282
Query: 211 LERGQVVKVTYSGEITESHVTYR 233
LERG+VV++ +VTYR
Sbjct: 283 LERGRVVRIERKSMSAGFYVTYR 305
>gi|378756615|gb|EHY66639.1| hypothetical protein NERG_00279 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 107/200 (53%), Gaps = 6/200 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV---DRLRISISHQSDPSK 97
+ +L ++T+ +M+K RGY V+ ++ + + F+ Y + L + H S P K
Sbjct: 9 KLWLCQKTIFQMMKCRGYTVSEVDMEMDLNAFKTSYPALINTGSKHSLSMLFQHTSMPEK 68
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEM 155
++ V F K I+ S + ++ G+I + + + + + KA+ + + +E+
Sbjct: 69 QLFVFFPDNAYFKAKDIKLYTSTLGKQNIHNGII-VCKETLKAHSLKALDESRKDYDLEL 127
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F I +LL NITKH PKH +LTD+EK+ +LK+ + + QL ++L D + +YY +RGQ
Sbjct: 128 FYIKELLFNITKHKDVPKHVLLTDEEKKSVLKERKVGDAQLKKILVDDPVNRYYAGKRGQ 187
Query: 216 VVKVTYSGEITESHVTYRCV 235
V ++ + E + YR V
Sbjct: 188 VYRIIRNSETAGISIEYRIV 207
>gi|168036467|ref|XP_001770728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677946|gb|EDQ64410.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 18/208 (8%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R S Y R+ VLEM++D Y VA +E+ L+ + F Y +DP + L I S+ +
Sbjct: 8 RQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNNA 67
Query: 97 KRILVVFCGP-----GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG--LF 149
+ GP G V + I++ ++ R+ + + ++Q IT + + +
Sbjct: 68 EH------GPKTGGKGRVGLKTIKTCKKRM-KRENVPRAVFVVQQHITPLSKQYISRKAQ 120
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYS----IEEKQLPRMLKKDAI 205
++ +E+F + LVNIT+ L P H++LT +EK LL++Y+ + LP M D +
Sbjct: 121 KYHLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYTEGNPVMLVLLPWMQHNDPV 180
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYR 233
A+YYG+ GQVVK+ S E +VTYR
Sbjct: 181 ARYYGINPGQVVKIIQSSETAGRYVTYR 208
>gi|428177456|gb|EKX46336.1| hypothetical protein GUITHDRAFT_163048 [Guillardia theta CCMP2712]
Length = 231
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 31/220 (14%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ-----DPDVDRLRISISHQSDP 95
R + R+T ML+DRG+ V + ++ F+ DP + +R SH+ +
Sbjct: 13 RIFQIRKTCWSMLEDRGFKVTNENKSETIVQFKETCTDRGHILDPGLLTMR---SHRVEN 69
Query: 96 SK-RILVVFCGPGIVKVN-----VIRSIISQIVNR--DTLTGLILILQNQITSQATKAV- 146
K RI+V+FCG V V I + N ++LT +++I +N +TS A + +
Sbjct: 70 EKQRIMVLFCGRKDKFVTDDAKYVFSCIDDEWKNTQAESLTAVVIIHKN-LTSYAKRFLV 128
Query: 147 -------------GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEE 193
+ ++ +F +L+VNIT+H + PKH++++ EK+KLL++Y + +
Sbjct: 129 TEHQKRYHGGGEGPRMKIELNIFFEVELVVNITEHEMVPKHRIMSGVEKKKLLQRYKVND 188
Query: 194 KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
QLPR+L D +A+Y GL RG VV++T + +VTYR
Sbjct: 189 DQLPRILISDPVAKYLGLRRGNVVEITRDSDTAGRYVTYR 228
>gi|387594524|gb|EIJ89548.1| hypothetical protein NEQG_00318 [Nematocida parisii ERTm3]
gi|387596634|gb|EIJ94255.1| hypothetical protein NEPG_00922 [Nematocida parisii ERTm1]
Length = 208
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 108/200 (54%), Gaps = 6/200 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV---DRLRISISHQSDPSK 97
+ +L ++T+ +M+K RGY V+ +++ + + F+ Y + L + H + P K
Sbjct: 9 KLWLCQKTIFQMMKCRGYTVSEADLEMDLDLFKTSYPALINTGSKHSLSMLFQHTTMPEK 68
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEM 155
++ V F K I+ S + ++ G+I + + + + + KA+ ++ +E+
Sbjct: 69 QLFVFFPDNAYFKAKDIKLYTSTLGKQNIHNGII-VCKETLKAHSLKALDESRKEYDLEL 127
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F I +LL NITKH PKH +LT++EK+ +LK+ + E QL ++L D + +YY +RGQ
Sbjct: 128 FYIRELLFNITKHKDVPKHILLTEEEKKNVLKERKVGEAQLKKILVDDPVNRYYAGKRGQ 187
Query: 216 VVKVTYSGEITESHVTYRCV 235
V ++ + E + YR V
Sbjct: 188 VYRIIRNSETAGISIEYRIV 207
>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
Length = 1617
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKV 111
M KDRGY VA +E+ S+ +FR+I+G PD+D LR SIS +S+P + LV+F G ++
Sbjct: 1 MHKDRGYDVADTELTRSLMEFRSIFGNCPDLDSLRFSISLRSNPYNKNLVIFMGTDEIRT 60
Query: 112 NVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQ 157
IR++ QI+++++ GLILILQ+++ A K F FKV++FQ
Sbjct: 61 ANIRAVYGQILSKESRQGLILILQSKMNHFAKKEPEKFPFKVKVFQ 106
>gi|161899423|ref|XP_001712938.1| RNA polymerase I, II and III [Bigelowiella natans]
gi|75756432|gb|ABA27326.1| RNA polymerase I, II and III [Bigelowiella natans]
Length = 204
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
+YYL + EML RGY V +NL+ F+ + + I+H +D + +I+
Sbjct: 8 KYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHLNDTNNKII 67
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQI 158
+ G++ VN + I + ++ +I I + ++ Q A+ F+ F +E+F
Sbjct: 68 GFYNNKGLIDVNYLGLKIEKAKTNNS-NSIIFITKRYLSKQTNIALSHFRRNFNIEIFFE 126
Query: 159 TDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
++L+N KH L PKH +L K K+LK Y++++ QLP++ D I++YYG ++G + K
Sbjct: 127 YEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIKLSDPISKYYGAKKGNMFK 186
Query: 219 VTYSGEITESHVTYRCV 235
+ E +++YR +
Sbjct: 187 IIRFSENIGVYLSYRII 203
>gi|406699193|gb|EKD02404.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 211
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 5/145 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SHQSD 94
R+ R + +TV EM++DRGY VA EIN+S DF+ YG VDR R++ +H D
Sbjct: 7 RELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHSRD 66
Query: 95 PSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FK 152
RI V FC V +S ++ + GLI + ++TS A K Q +
Sbjct: 67 SRDRIYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLI-VHGGKLTSGAAKTQNEMQSEYH 125
Query: 153 VEMFQITDLLVNITKHVLKPKHQVL 177
+E F+ DLLVNIT+H L PKH ++
Sbjct: 126 LEDFKEADLLVNITRHFLVPKHTIM 150
>gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 106/199 (53%), Gaps = 35/199 (17%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R +L +RT+++MLKDRGY + SEI +++++F YG +
Sbjct: 10 RLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDN--------------------- 48
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQN--QITSQATKAVGLFQ--FKVEMF 156
+ ++S++ T+ IL++Q+ + QA +G F +E+F
Sbjct: 49 ----------MKRSLLLLSKLRKMMTMIRAILVVQDIKAFSRQALVFLGAVYPIFHIEVF 98
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
Q +L+VN+ +HV P+HQ LT +EK+K L++ LPR+ D IA+Y+GL+RG+V
Sbjct: 99 QEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRIHVTDPIARYFGLKRGEV 158
Query: 217 VKVTYSGEITESHVTYRCV 235
VK++ E + ++TYR V
Sbjct: 159 VKISRLSETSGRYITYRYV 177
>gi|169806439|ref|XP_001827964.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
gi|161779104|gb|EDQ31129.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 2/193 (1%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
+L+R T++EML DRGY S I ++DF+ + + +I + +D +
Sbjct: 10 WLARNTIIEMLTDRGYIFEQS-IFSQLEDFKNTFNLEDSTSCNFTAIRNVNDKVILCAIH 68
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLL 162
F + I +II+ N+ +++ LILI N++ A + F +E+F D+L
Sbjct: 69 FTSNDKLSKKQIETIITDYSNQ-SISKLILISCNKLNHAALAYLDKSNFSIELFLYKDIL 127
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
N TKH+L P H++++ +EK LL LP +LKKD IA+Y G E V+++T
Sbjct: 128 FNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRK 187
Query: 223 GEITESHVTYRCV 235
+ T YR V
Sbjct: 188 SKTTGESKYYRVV 200
>gi|300701817|ref|XP_002995033.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
gi|239603668|gb|EEQ81362.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
Length = 204
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
+++L R T++EM +RGY + LS +F A Q P D+ SI+ + ++
Sbjct: 7 KFFLCRNTLVEMCTERGYTT--DQKVLSYDNFIA---QFPSCDKDVNSINFVCKNADNLV 61
Query: 101 -VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQIT 159
+ F + + I +I + + LIL++ +++S + V + K+E+F+
Sbjct: 62 GIHFIDDEKIGKSSIEKVI-ETYKSINIYHLILVINQKMSSASQNIVNVSDLKIEIFKDE 120
Query: 160 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
+L+ NITKHV P+H++L D EK +L+K I Q+P++LK+D + ++ G E GQVV++
Sbjct: 121 ELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKILKRDPVCRFLGAESGQVVEI 180
Query: 220 TYSGEITESHVTYRCV 235
T + Y+ V
Sbjct: 181 TRKSRTAGESIFYKVV 196
>gi|407846764|gb|EKG02755.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 108/204 (52%), Gaps = 23/204 (11%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD---VDRLRISISHQSDPSKRILV-- 101
RTV EM+ DR Y VA I SV++F+ Y DP + R R+++ P +RI V
Sbjct: 23 RTVGEMMCDRKYQVADKIIPSSVEEFKDWY-TDPREGVIHRDRMTV-----PCERIGVSQ 76
Query: 102 -----VFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-----GLFQF 151
VF G+ + ++ +Q + +I+++Q +I + + V
Sbjct: 77 RSRAMVFFSEGL-SMETMKRYHTQ-ASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGL 134
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
K+++F DL+VNIT H L PKH L D+E +++L+ +S+E LPR+L D +A Y GL
Sbjct: 135 KIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHSLELSALPRILSTDPVAAYLGL 194
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
ERG+VV++ +VTYR V
Sbjct: 195 ERGRVVRIERKSMSAGFYVTYRQV 218
>gi|380495005|emb|CCF32725.1| DNA-directed RNA polymerase II polypeptide [Colletotrichum
higginsianum]
Length = 107
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
KVE F DLLVNIT+H L PKH +L+ +EK LLK+Y ++E QLPR+L+KD +A+Y GL
Sbjct: 23 KVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRYRLKETQLPRILQKDPVAKYLGL 82
Query: 212 ERGQVVKVTYSGEITESHVTYR-CV 235
+RGQVVK+ + E + +YR CV
Sbjct: 83 KRGQVVKIIRTSETAGRYASYRLCV 107
>gi|164656180|ref|XP_001729218.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
gi|159103108|gb|EDP42004.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISI--SH 91
N R++ R + RT+ E++ DRGY V+ E+N+ + F+A + VDR R++ H
Sbjct: 2 NDDRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQH 61
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL--F 149
+ P +R+ V + V V +R I+ I+ +T I+I +++TS A K +
Sbjct: 62 KDKPEERLFVFYSTERNVGVKTMRQFIN-ILEEKNITRGIIIWSDKMTSAAKKVIEAMRL 120
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
Q +E F+ LLVNIT H L PKH+VLT EK++LL +
Sbjct: 121 QLVLEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159
>gi|238488995|ref|XP_002375735.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
gi|220698123|gb|EED54463.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
Length = 171
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 99 ILVVFC----GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV- 153
I V FC G G +V + +V+ + + I Q I+ A + + ++
Sbjct: 33 IYVEFCPDSTGVGTKQVRAF----NHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRIC 88
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E FQ DLLVNIT+H L PKH +L+ +EK KLL +Y ++E QLPR+ D +A+Y GL R
Sbjct: 89 EHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLPRIQVSDPVARYLGLRR 148
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
GQVVK+ E + +YR V
Sbjct: 149 GQVVKIIRRSETAGRYASYRWV 170
>gi|449681257|ref|XP_002162780.2| PREDICTED: uncharacterized protein LOC100208454, partial [Hydra
magnipapillata]
Length = 383
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRILVVFCGP 106
M DR Y V E++ +++ F +G P + + ++H DP+ ++ V F
Sbjct: 1 MCHDRRYLVTQDELDQTLEQFIEQFGDRPSEGHPSRGDISVLVAHNDDPTDQMFVFFPEE 60
Query: 107 GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVN 164
V + I+ +++ + + I+++Q +T A +A+ ++ +E F +LL+N
Sbjct: 61 EKVGIKTIKQYCTRM-QEEGINRAIIVVQTGMTPSAKQALVDMAPKYILEQFLEAELLIN 119
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
+T+H L P+H VL+ +EK +LL +Y +++ QLPR+ + D IA+Y+GL+RGQ
Sbjct: 120 VTEHNLVPEHVVLSPEEKAELLTRYKLKDHQLPRIQQGDTIARYFGLKRGQ 170
>gi|70996052|ref|XP_752781.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|66850416|gb|EAL90743.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|159131535|gb|EDP56648.1| RNA polymerase subunit [Aspergillus fumigatus A1163]
Length = 171
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 99 ILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKV-EMF 156
I V FC V +R+ + V+ + + I Q I+ A + + ++ E F
Sbjct: 33 IYVEFCADSTGVGTKQVRAF-NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHF 91
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
Q DLLVNIT+H L PKH +L+ +EK+ LL++Y ++E QLPR+ D +A+Y GL RGQV
Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQV 151
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E + +YR V
Sbjct: 152 VKIIRKSETAGRYASYRWV 170
>gi|70938710|ref|XP_739995.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|56517394|emb|CAH79759.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 118 ISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQ 175
+++ ++ ++ IL+ QN +T A A+ + +E F T+LLVNITKH L PKH
Sbjct: 6 LTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHI 65
Query: 176 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK+ E +VTYR V
Sbjct: 66 PLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 125
>gi|71660313|ref|XP_821874.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|71664576|ref|XP_819267.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|19718719|gb|AAL96367.1|AC116314_4 Tcc44h21-2.4 [Trypanosoma cruzi]
gi|70884561|gb|EAN97416.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
gi|70887263|gb|EAO00023.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 23/204 (11%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-----DRL-----RISISHQSDPS 96
RTV EM+ DR Y VA I SV++F+ Y DP DR+ RI +S +S
Sbjct: 23 RTVGEMMCDRKYQVADKIIPSSVEEFKDWY-TDPREGVIYRDRMTVPCERIGVSQRSRA- 80
Query: 97 KRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-----GLFQF 151
+VF G+ + ++ +Q + +I+++Q +I + + V
Sbjct: 81 ----MVFFSEGL-SMETMKRYHTQ-ASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGL 134
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
K+++F DL+VNIT H L PKH L D+E +++L+ +++E LPR+L D +A Y GL
Sbjct: 135 KIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRILSTDPVAAYLGL 194
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
ERG+VV++ +VTYR V
Sbjct: 195 ERGRVVRIERKSMSAGFYVTYRQV 218
>gi|407407449|gb|EKF31248.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi
marinkellei]
Length = 219
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 23/204 (11%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-----DRL-----RISISHQSDPS 96
RTV EM+ DR Y VA I SV++F+ Y DP DR+ RI +S +S
Sbjct: 23 RTVGEMMCDRKYQVADKIIPSSVEEFKDWY-TDPREGVIYRDRMTVPCERIGVSQRSRA- 80
Query: 97 KRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-----GLFQF 151
+VF G+ + ++ +Q + +I++ Q +I + + V
Sbjct: 81 ----MVFFSEGL-SMETMKRYHTQ-ASEANCDRVIIVAQGKINAIVKRHVEDINRSSLGL 134
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
K+++F DL+VNIT H L PKH L D+E +++L+ +++E LPR+L D +A Y GL
Sbjct: 135 KIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSTLPRILSTDPVAAYLGL 194
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
ERG+VV++ +VTYR V
Sbjct: 195 ERGRVVRIERKSMSAGFYVTYRQV 218
>gi|167517495|ref|XP_001743088.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778187|gb|EDQ91802.1| predicted protein [Monosiga brevicollis MX1]
Length = 176
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 44/202 (21%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRIS-----ISHQSDP 95
R + R T+ ++ +DRGY V ++ L+ + F +G P ++ R S + SDP
Sbjct: 13 RLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRASDP 72
Query: 96 SKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEM 155
+ ++ V F V + V+R +
Sbjct: 73 TDQLGVYFANDPKVGIAVVR--------------------------------------DF 94
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F+ +L+VN+TKH L PKH + T +EK LL++Y ++E+QLPR+ D IA+Y GL+RGQ
Sbjct: 95 FEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKRGQ 154
Query: 216 VVKVTYSGEITES-HVTYRCVW 236
VVK+ T +V+YR V+
Sbjct: 155 VVKIIRENSPTAGRYVSYRLVF 176
>gi|71019505|ref|XP_759983.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
gi|46099489|gb|EAK84722.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
Length = 554
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY---GQDPDVDRLRISISHQS 93
R+++R + RT+ E+++DRGY VA EI++ ++ F+A Y G D ++L H
Sbjct: 5 RETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHGE 64
Query: 94 DPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--F 151
++R+ V + V V +R IS + RD G+I I ++TS A K + + F
Sbjct: 65 HENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGII-IWPEKMTSAARKVIDAMRGTF 123
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
+E F+ LLVNIT H L PKH+ L +EK++LL++
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
>gi|346325153|gb|EGX94750.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Cordyceps
militaris CM01]
Length = 334
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 61 ALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL--------------VVFCGP 106
A S LS Q F P R ++ S + PS +L V CGP
Sbjct: 80 ATSYPALSSQVFCLTLSSPPSPSRAKLQFSAR--PSDAMLRKHTPPATDANPDPVADCGP 137
Query: 107 GIVK--------VNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMF 156
V+ V IR + TG I++ ++ A K++ + K+E F
Sbjct: 138 IWVEFLADKQFGVAQIRQFAKYTITNHYKTG-IMVTHVALSPAARKSLASVENLAKIECF 196
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
DLLVNIT H L P+H +L+ +EK LLK+Y ++E QLPR+L KD +A+Y GL+RGQV
Sbjct: 197 LEDDLLVNITHHELVPRHVLLSREEKIALLKRYRLKETQLPRILAKDPVARYLGLKRGQV 256
Query: 217 VKV 219
VK+
Sbjct: 257 VKI 259
>gi|384497180|gb|EIE87671.1| hypothetical protein RO3G_12382 [Rhizopus delemar RA 99-880]
Length = 140
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 5/141 (3%)
Query: 52 MLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR--LRISISHQSDPSKRILVVFCGPGIV 109
M+ DRGY V+ SE+++ ++ F+ + DVDR L + + DP+ ++LV F V
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 110 KVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMFQITDLLVNITK 167
V +R + ++ + G I I Q +TS A K + K +E FQ +LLVNIT
Sbjct: 61 GVKPLRVYVERMAQQQIPKG-ICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNITH 119
Query: 168 HVLKPKHQVLTDQEKEKLLKK 188
HVL PKH+VLT +EK LL++
Sbjct: 120 HVLVPKHEVLTAEEKSTLLQR 140
>gi|66543279|ref|XP_623541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
Length = 179
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRIS 88
+ ++ + + R+TV+++ DRGY V E++ +++ F+ +G P R L +
Sbjct: 2 DDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL 148
++H DP+ ++ V F + + I++ ++ +I++ Q S V +
Sbjct: 62 VAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDM 121
Query: 149 F-QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
++ +E F ++LL+NIT+H L P+H VLT EKE+LL +Y ++E QL R+ D +
Sbjct: 122 APKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQAGDPV 179
>gi|340377817|ref|XP_003387425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 143
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 122 VNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTD 179
+ + ++ I+++Q +T A +A+ ++ +E F +L++NIT+H L P+H V+T
Sbjct: 27 MQEENISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPEHIVMTT 86
Query: 180 QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+EK +LL +Y ++E QLP++ D +A+YYGL+RGQVVK+ E + TYR V
Sbjct: 87 EEKRELLARYKLKEHQLPKIQSGDPVARYYGLKRGQVVKIIRPSETAGRYATYRLV 142
>gi|296232401|ref|XP_002761575.1| PREDICTED: uncharacterized protein LOC100393628 [Callithrix
jacchus]
Length = 323
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 117 IISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKH 174
+ Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H
Sbjct: 202 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 261
Query: 175 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRC 234
V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR
Sbjct: 262 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 321
Query: 235 V 235
V
Sbjct: 322 V 322
>gi|212533615|ref|XP_002146964.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072328|gb|EEA26417.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 172
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 98 RILVVFC----GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK----AVGLF 149
+I V FC G G +V + +V+ I I + I+ A + A+G
Sbjct: 33 QIFVQFCEDTTGVGAKQVRQF----NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHI 88
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
E FQ +DLLVNIT H L PKH +L+ +EK +LL++Y ++E QLPR+ D +A+Y
Sbjct: 89 ---CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQVSDPVARYL 145
Query: 210 GLERGQVVKVTYSGEITESHVTYRCV 235
GL RGQVVK+ E + +YR V
Sbjct: 146 GLRRGQVVKIIRKSETAGRYASYRWV 171
>gi|340386554|ref|XP_003391773.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 124
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 131 ILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
I+++Q +T A +A+ ++ +E F +L++NIT+H L P+H V+T +EK +LL +
Sbjct: 19 IIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPEHIVMTTEEKRELLAR 78
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
Y ++E QLP++ D +A+YYGL+RGQVVK+ E +VTYR
Sbjct: 79 YKLKEHQLPKIQSGDPVARYYGLKRGQVVKIIRPSETAGRYVTYR 123
>gi|225681878|gb|EEH20162.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 171
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Query: 99 ILVVFCGP-GIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFK-VEMF 156
I V FC V +R+ I ++ TG I I Q I+ A + + + E F
Sbjct: 33 IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTG-IFISQTPISPSAMRVLNSIPGRFCEHF 91
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
Q +LLVNIT H L PKH +L+ +EK++LL++Y ++E QLPR+ D +A+Y GL RGQV
Sbjct: 92 QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQV 151
Query: 217 VKVTYSGEITESHVTYRCV 235
VK+ E + +YR V
Sbjct: 152 VKIIRKSETAGRYASYRWV 170
>gi|303389965|ref|XP_003073214.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
gi|303302359|gb|ADM11854.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
Length = 214
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS-DPSKRILVV 102
LSR T +EM+KDRGY VQ + + P R +++ D ++ + +
Sbjct: 24 LSRNTTIEMIKDRGYTTTQE-----VQTLDEFHEKYPFALTKRSTLNFVCVDTNRPVAIH 78
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL-FQFKVEMFQITDL 161
F + V +++Q +D + LILIL + + L +F +E+F + ++
Sbjct: 79 FGEDEKMGKKVFEGLLTQ-YEKDNIFHLILILPLAPSPTVMSMISLNPKFCIEIFLVEEM 137
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+ N TKH P H++L+ +EKEK+ + LPR+LK DAIA+YYG +G VV++
Sbjct: 138 IFNKTKHSWVPPHRILSREEKEKVFNTLKLGPGDLPRILKSDAIARYYGARQGDVVEIVR 197
Query: 222 SGEITESHVTYRCV 235
+ + YR V
Sbjct: 198 KSKTAGESIYYRIV 211
>gi|396081727|gb|AFN83342.1| DNA-directed RNA polymerase I [Encephalitozoon romaleae SJ-2008]
Length = 210
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS-DPSKRILVV 102
LSR T +EM+KDRGY VQ + + + P R +++ D + + +
Sbjct: 20 LSRNTTIEMIKDRGYTTTQE-----VQSLESFHERYPFALTKRSTLNFVCVDVDRPVGIH 74
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL-FQFKVEMFQITDL 161
F + ++SQ +D + LILIL + + L +F VE+F + ++
Sbjct: 75 FGDDEKMGKKGFEGLLSQ-YEKDNIFHLILILPQFPSPTVMSMISLNPKFNVEIFLVEEM 133
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+ N TKH P H++L+ +EKE +LK + LPR+LK D IA+YYG +RG V+++
Sbjct: 134 VFNKTKHSWVPPHRILSREEKENVLKALKLGPGDLPRILKSDVIARYYGAKRGDVMEIVR 193
Query: 222 SGEITESHVTYRCV 235
+ YR V
Sbjct: 194 RSRTAGESIYYRIV 207
>gi|344307865|ref|XP_003422599.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Loxodonta africana]
Length = 224
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 117 IISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKH 174
+ Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H
Sbjct: 103 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 162
Query: 175 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRC 234
V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR
Sbjct: 163 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 222
Query: 235 V 235
V
Sbjct: 223 V 223
>gi|401827017|ref|XP_003887601.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
gi|392998607|gb|AFM98620.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
Length = 200
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS-DPSKRILVV 102
LSR T +EM+KDRGY E+ ++ FR Y P R S++ D + + +
Sbjct: 10 LSRNTTIEMVKDRGYTTT-QEVQ-PLESFREKY---PFALTKRSSLNFVCVDVDRPVAIH 64
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGL-FQFKVEMFQITDL 161
F + ++SQ +D + LILIL + + L +F VE+F + ++
Sbjct: 65 FGDDEKMGKKSFEGLLSQ-YEKDNIFHLILILPQMPSPAVMSMIALNAKFNVEIFLVEEM 123
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+ N TKH P H++L+ +E+E + K + LPR+L+ D IA+YYG +G VV++
Sbjct: 124 MFNKTKHSWVPPHRILSREERENVFKSLKLGPGDLPRILRSDVIARYYGARQGDVVEIVR 183
Query: 222 SGEITESHVTYRCV 235
+ YR V
Sbjct: 184 RSRTAGESIYYRIV 197
>gi|326499964|dbj|BAJ90817.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 69/97 (71%), Gaps = 2/97 (2%)
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG-LFQFKVEMFQIT 159
++FC P V++ I+ I QI + L+ LILIL +I +A ++V F FKV++FQ+
Sbjct: 30 ILFCPPEPVRIANIQEIHDQI-EGENLSRLILILLGKIMPRAKESVKEKFTFKVDIFQVN 88
Query: 160 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+LLVNI+KH LKPKH+VLT +EK KLLK Y++E+ Q+
Sbjct: 89 ELLVNISKHDLKPKHEVLTAEEKAKLLKLYNVEDSQV 125
>gi|428163062|gb|EKX32155.1| hypothetical protein GUITHDRAFT_82572, partial [Guillardia theta
CCMP2712]
Length = 81
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F ++L VNIT+H L P+H VLT+++K+ LLK+Y ++EK LPR+ K D IA+YYGLER
Sbjct: 1 FLASELKVNITRHELVPQHYVLTEEDKKTLLKRYHLQEKHLPRIQKSDPIARYYGLERQH 60
Query: 216 VVKVTYSGEITESHVTYRCV 235
V+K+ E +VTYR V
Sbjct: 61 VLKIIRYSETAGKYVTYRLV 80
>gi|71748956|ref|XP_827817.1| DNA-directed RNA polymerases II subunit [Trypanosoma brucei
TREU927]
gi|70833201|gb|EAN78705.1| DNA-directed RNA polymerases II subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 219
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDF---------RAIYGQDPDVDRLRISISH 91
R + RTV EM++DR Y V S I +V F R IY + V R+ +H
Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQYVDREGRRIYRERMTVPCERVGGTH 76
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQF 151
+S R +V F + + ++ ++ + +I++ ++ + + V
Sbjct: 77 RS----RAMVFFASE--LGMEGMKGYCQTAMDANC-ERVIIVTHGKVNATVKRYVDCINR 129
Query: 152 -----KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
KV++F DL+VNIT H L PKH L D+E +++L+ +S+E LPR+L D +A
Sbjct: 130 SGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRILSTDPVA 189
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y GLERG+VV++ +VTYR V
Sbjct: 190 AYLGLERGRVVRIERKSVSAGFYVTYRQV 218
>gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329590|gb|AGE95861.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 212
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS-------DPS 96
LSR T +EM++DRGY + Q+ A+ G +R ++++ +S +
Sbjct: 20 LSRNTAIEMVRDRGYT--------TTQEVLALDGFH---ERYPLALTKRSTLNFVCVNVD 68
Query: 97 KRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFKVEM 155
+ + V F + ++SQ +D + LILIL + + L +F +E+
Sbjct: 69 RPVAVHFGDDEKMGKKAFEGLLSQ-YEKDNMFHLILILPQLPSPTVMSMIPLTPRFSIEI 127
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F + +L+ N TKH P H+VL+ +E+E + + + LPR+LK D IA+YYG ++G
Sbjct: 128 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRILKSDVIARYYGAKQGD 187
Query: 216 VVKVTYSGEITESHVTYRCV 235
VV++T + + YR V
Sbjct: 188 VVEITRRSKTAGESIYYRVV 207
>gi|392512756|emb|CAD25628.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 202
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS-------DPS 96
LSR T +EM++DRGY + Q+ A+ G +R ++++ +S +
Sbjct: 10 LSRNTAIEMVRDRGYT--------TTQEVLALDGFH---ERYPLALTKRSTLNFVCVNVD 58
Query: 97 KRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF-QFKVEM 155
+ + V F + ++SQ +D + LILIL + + L +F +E+
Sbjct: 59 RPVAVHFGDDEKMGKKAFEGLLSQ-YEKDNMFHLILILPQLPSPTVMSMIPLTPRFSIEI 117
Query: 156 FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQ 215
F + +L+ N TKH P H+VL+ +E+E + + + LPR+LK D IA+YYG ++G
Sbjct: 118 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRILKSDVIARYYGAKQGD 177
Query: 216 VVKVTYSGEITESHVTYRCV 235
VV++T + + YR V
Sbjct: 178 VVEITRRSKTAGESIYYRVV 197
>gi|432855570|ref|XP_004068252.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Oryzias latipes]
Length = 159
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 120 QIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVL 177
Q + + +T I+++Q +T A +++ ++ +E F +LL+NIT+H L P+H V+
Sbjct: 41 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 100
Query: 178 TDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
T +E +LL +Y ++E QLPR+ D +A+Y+GL+RGQVVK+ E ++TYR V
Sbjct: 101 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 158
>gi|90954539|emb|CAJ44464.1| RNA polymerase subunit 2RPB5 [Trypanosoma brucei brucei]
gi|261333514|emb|CBH16509.1| DNA-directed RNA polymerases II subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 219
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDF---------RAIYGQDPDVDRLRISISH 91
R + RTV EM++DR Y V S I +V F + IY + V R+ +H
Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQYVDREGKRIYRERMTVPCERVGGTH 76
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQF 151
+S R +V F + + ++ ++ + +I++ ++ + + V
Sbjct: 77 RS----RAMVFFASE--LGMEGMKGYCQTAMDANC-ERVIIVTHGKVNATVKRYVDCINR 129
Query: 152 -----KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
KV++F DL+VNIT H L PKH L D+E +++L+ +S+E LPR+L D +A
Sbjct: 130 SGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRILSTDPVA 189
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y GLERG+VV++ +VTYR V
Sbjct: 190 AYLGLERGRVVRIERKSVSAGFYVTYRQV 218
>gi|351714028|gb|EHB16947.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Heterocephalus glaber]
Length = 292
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 117 IISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKH 174
+ Q + + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H
Sbjct: 171 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 230
Query: 175 QVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRC 234
V+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR
Sbjct: 231 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 290
Query: 235 V 235
V
Sbjct: 291 V 291
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 77/142 (54%), Gaps = 8/142 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F++ +G P R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGHPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKH 168
++ +E F +LL+NIT+H
Sbjct: 121 MAPKYILEQFLQQELLINITEH 142
>gi|146083991|ref|XP_001464893.1| putative DNA-directed RNA polymerases II [Leishmania infantum
JPCM5]
gi|398013799|ref|XP_003860091.1| DNA-directed RNA polymerases II, putative [Leishmania donovani]
gi|134068988|emb|CAM67131.1| putative DNA-directed RNA polymerases II [Leishmania infantum
JPCM5]
gi|322498310|emb|CBZ33384.1| DNA-directed RNA polymerases II, putative [Leishmania donovani]
Length = 239
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 33/221 (14%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV------------------------ 82
+T EM+ DR Y VA + S+ +F Y ++ +V
Sbjct: 19 QTSAEMMSDRKYKVAQHVVPSSLGEFIERYVEEVEVTEDGGAAVGGGPNDAPPRRKQVIR 78
Query: 83 -DRLRISISHQ--SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQIT 139
D++ ++ + + + +V FC P + V++ I +N + ++ + ++
Sbjct: 79 RDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALN-EGYQRVVFVTPSKPN 137
Query: 140 SQATKAVGLFQ-----FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 194
K + + + E+F+ +L VNIT H L PKH L+++E +L+ +++E
Sbjct: 138 PIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVLQAHALELN 197
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
QLPR+L D +A+YYGL+RGQVV++ +VTYR V
Sbjct: 198 QLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQV 238
>gi|145481253|ref|XP_001426649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393725|emb|CAK59251.1| unnamed protein product [Paramecium tetraurelia]
Length = 224
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 47 RTVLEMLKDRGYAVALSEI---NLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVF 103
+T+ M++ RGY A I + + F A Y D R+ + + + K ++ +
Sbjct: 22 QTLASMIRQRGYFEANPPILIEDEPFELFEAKYRTDVLPQRV-VCFKKEDETDKMVIQFY 80
Query: 104 CGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV------------GLFQF 151
+ + + IS++ NR + LI++ + + V + +
Sbjct: 81 TKQTALNYDDAKKYISELSNR-QVKRLIMVFPTDPFATKPQVVEKKARFFIDQVNSIQTY 139
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
E+F DL+ ++TKH L P+H +L D+EKE LLKKY + + QLPR+L+ D IA++ GL
Sbjct: 140 SFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIARFLGL 199
Query: 212 ERGQVVKVTYSGEITESHVTYR 233
G VVK+ E +VTYR
Sbjct: 200 HHGDVVKIIRKSETAGLYVTYR 221
>gi|119589956|gb|EAW69550.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_c [Homo sapiens]
gi|194381594|dbj|BAG58751.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 122 VNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTD 179
+ + +T ++++Q +T A +++ ++ +E F +LL+NIT+H L P+H V+T
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 180 QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 61 EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116
>gi|453084450|gb|EMF12494.1| RNA polymerase subunit [Mycosphaerella populorum SO2202]
Length = 170
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 2/138 (1%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLFQFKVEMFQ 157
I V F V + ++ ++ ++ TG I + Q TS A K + + +E+F+
Sbjct: 33 IHVEFANETSVGIKHLKQFAQELSEKNYYTG-IYVSQVAPTSAALKIIPSVLPTVMEIFR 91
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVV 217
DLLVNI+KH L PKH L+ +EK LL++Y ++E QLPR+ D +A+Y GL R QVV
Sbjct: 92 EEDLLVNISKHELVPKHIPLSQEEKRGLLERYRLKETQLPRIRVDDPMARYLGLRRSQVV 151
Query: 218 KVTYSGEITESHVTYRCV 235
K+ E + +YR
Sbjct: 152 KIIRKSETAGRYASYRWA 169
>gi|401419204|ref|XP_003874092.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490326|emb|CBZ25586.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 239
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 33/221 (14%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV------------------------ 82
+T EM+ DR Y VA + S+ +F Y ++ +V
Sbjct: 19 QTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDAPPRRKQVIR 78
Query: 83 -DRLRISISHQ--SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQIT 139
D++ ++ + + + +V FC P + V++ I +N + ++ + ++
Sbjct: 79 RDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALN-EGYQRVVFVTPSKPN 137
Query: 140 SQATKAVGLFQ-----FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 194
K + + + E+F+ +L VNIT H L PKH L+++E + +L +++E
Sbjct: 138 PIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVLHAHALELH 197
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
QLPR+L D +A+YYGL+RGQVV++ +VTYR V
Sbjct: 198 QLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQV 238
>gi|157867861|ref|XP_001682484.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
gi|68125938|emb|CAJ03739.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
Length = 239
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV------------------------ 82
+T EM+ DR Y VA + S+ +F Y ++ +V
Sbjct: 19 QTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDALPRRKQVIR 78
Query: 83 -DRLRISISHQ--SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQIT 139
D++ ++ + + + +V FC P + V++ I +N + ++ + ++
Sbjct: 79 RDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALN-EGYQRIVFVTPSKPN 137
Query: 140 SQATKAVGLFQ-----FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEK 194
K + + + E+F+ +L VNIT H L PKH L+++E +L +++E
Sbjct: 138 PIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVLHAHALELN 197
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
QLPR+L D +A+YYGL RGQVV++ +VTYR V
Sbjct: 198 QLPRILSTDPVARYYGLRRGQVVRIERKSMSAGLYVTYRQV 238
>gi|342184881|emb|CCC94363.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma
congolense IL3000]
Length = 219
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 23/210 (10%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRIL 100
R + RTV EM++DR Y S I +V+ F Y D D I S + P +R+
Sbjct: 17 RMFRVLRTVGEMMRDRKYHFPTSLIPETVEQFCEQY---VDRDTREIFRSRMTLPCERVG 73
Query: 101 VVFCGPGIVKVNV----------IRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
G +V +V +S + +R +I+++ +++ + + V
Sbjct: 74 GSQRGRAMVFFSVELGMEAMKTYYQSAMDAGCDR-----VIIVVHSKVNATVKRYVDYIN 128
Query: 151 -----FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
KV++F L+VNIT H L PKH L D+E ++L+ +S+E LPR+L D +
Sbjct: 129 RSNTGAKVQLFDEDSLVVNITHHELVPKHTPLEDEEVREMLRAHSLEVNMLPRILSTDPV 188
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYRCV 235
A Y GLERG VV++ +VTYR V
Sbjct: 189 AAYLGLERGGVVRIERKSMSAGFYVTYRQV 218
>gi|118387602|ref|XP_001026905.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308672|gb|EAS06660.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 275
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 53/85 (62%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+K E+F DL++NITKH L PKH L EK+KL+ KY I + QLP++L D I +Y+G
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFG 249
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L QV K+ E ++TYR V
Sbjct: 250 LRTKQVFKIERDSETAGKYITYRIV 274
>gi|145481865|ref|XP_001426955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394033|emb|CAK59557.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 14/202 (6%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVF-CG 105
+T+ M++ RGY + + + F + D +I + D S ++L++F
Sbjct: 22 QTLASMIRQRGYFESTPAKLVEDETFEIFESKYRDNLPEKIVCFKRDDESDKLLIIFYTK 81
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG----LF--------QFKV 153
+ + I NR + LI+I + + V LF +
Sbjct: 82 QAPLTHEEAKKTIQDFSNR-QVKRLIMIFPTDPFATKPQVVDKKARLFIDQVNSIQTYSF 140
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
E+F DL+ ++TKH L P+H +L D+EKE LLKKY + + QLPR+L+ D IA++ GL
Sbjct: 141 ELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIARFLGLHH 200
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
G VVK+ E +VTYR
Sbjct: 201 GDVVKIIRKSETAGLYVTYRIA 222
>gi|154335545|ref|XP_001564011.1| putative DNA-directed RNA polymerases II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061042|emb|CAM38061.1| putative DNA-directed RNA polymerases II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 239
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Query: 98 RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-----FK 152
+ +V FC P + V++ I ++ + ++ + ++ K + + +
Sbjct: 97 KAVVYFCPPNHLSSEVVKKIAEDALH-EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLR 155
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
E+F+ +L VNIT H L PKH L+++E + +L +++E QLPR+L D +A+YYGL+
Sbjct: 156 FELFEEDELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLPRILSTDPVARYYGLK 215
Query: 213 RGQVVKVTYSGEITESHVTYRCV 235
RGQVV++ +VTYR V
Sbjct: 216 RGQVVRIERKSMSAGLYVTYRQV 238
>gi|429961418|gb|ELA40963.1| hypothetical protein VICG_01993 [Vittaforma corneae ATCC 50505]
Length = 206
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
+L+R T++EML +RGY S N+ + D+ + Q P+ + +++ + V
Sbjct: 14 WLARNTIIEMLNERGY----SSSNMPL-DYASFVSQFPNAENNPSTLNFVCSKDQPFAVH 68
Query: 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLL 162
F + + ++ ++ + + +ILI ++ + + +E F + +L
Sbjct: 69 FTSEDKLSKKSLETLTNEYAAQG-IANVILITSAKLNPACKVLMKSIKLNLEHFLVEELQ 127
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
NITKH L PKH+++++ E+++LL K E LP +L D + +++G + G + ++T +
Sbjct: 128 FNITKHHLVPKHRIMSESEQKELLNKLKCEMSNLPTILTTDPVCRFFGAKAGVIFEITRN 187
Query: 223 GEITESHVTYRCV 235
+ + + YR V
Sbjct: 188 SQTAGTALYYRVV 200
>gi|154417816|ref|XP_001581927.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121916159|gb|EAY20941.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 217
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 127 LTGLILILQN----QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEK 182
+T LIL+ Q I + K + L K+E F + +L NIT H PKH+VL+++EK
Sbjct: 104 ITHLILVHQEGSLAHIFDRIKKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEK 163
Query: 183 EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+L +Y I+E +LP++L D + +YYG + G ++++T E VTYR V
Sbjct: 164 NELFNRYKIDETKLPQILSTDPVVRYYGADPGAIIEITRRSETCGRVVTYRLV 216
>gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus]
Length = 162
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
++ +E F +LL+NIT+H L P+H V+T +E +LL +
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>gi|148699662|gb|EDL31609.1| mCG13422, isoform CRA_b [Mus musculus]
Length = 165
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 5 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 64
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 65 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 123
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
++ +E F +LL+NIT+H L P+H V+T +E +LL +
Sbjct: 124 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 165
>gi|159108363|ref|XP_001704453.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
gi|21842211|gb|AAM77735.1|AF510643_1 RNA polymerase II subunit Rpb5a [Giardia intestinalis]
gi|157432516|gb|EDO76779.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
Length = 229
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 35/218 (16%)
Query: 46 RRTVLEMLKDRGYAVALSE---------INLSVQDFRAIYGQDPDVDRL----RISISHQ 92
RRTV+EML DRGY V + +N + QDF + P ++ ++ S
Sbjct: 14 RRTVIEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTHKLRKSSA 73
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT--LTGLILIL---------------Q 135
+ ++ + V P I K ++I + + NR+T L +I ++ Q
Sbjct: 74 NSLNQETIKVRPVPVIDK-DLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDSPNKTIQ 132
Query: 136 NQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+I +A +A G+ +E F +T LL+NITKHVL PKH +L++ EK +LK+Y E Q
Sbjct: 133 ARI-DEAQRANGIV---IEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQ 188
Query: 196 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+P + D +A+Y GL VV+++ E + T+R
Sbjct: 189 IPIIESSDPMARYLGLLPNDVVRISRPSETVGIYTTFR 226
>gi|308160666|gb|EFO63141.1| RNA polymerase II subunit Rpb5a [Giardia lamblia P15]
Length = 229
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 35/218 (16%)
Query: 46 RRTVLEMLKDRGYAVALSE---------INLSVQDFRAIYGQDPDVDRL----RISISHQ 92
RRTV+EML DRGY V + +N + QDF + P ++ ++ S
Sbjct: 14 RRTVVEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTHKLRKSSA 73
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT--LTGLILIL---------------Q 135
+ ++ + V P I K ++I + + NR+T L +I ++ Q
Sbjct: 74 NSLNQETIKVRPVPVIDK-DLIDKLKVETQNRETRPLDRIIYVIYGREGKKLDPPNKTIQ 132
Query: 136 NQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQ 195
+I +A +A G+ +E F +T LL+NITKHVL PKH +L++ EK +LK+Y E Q
Sbjct: 133 ARI-DEAQRANGIV---IEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQ 188
Query: 196 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+P + D +A+Y GL VV+++ E + T+R
Sbjct: 189 IPIIESSDPMARYLGLLPNDVVRISRPSETVGIYTTFR 226
>gi|294880824|ref|XP_002769160.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239872330|gb|EER01878.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 168
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 16/155 (10%)
Query: 85 LRISISHQSDPSKRILVVFCGPGI-VKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
L I +S Q DPS +++V F V V IR++ ++ L+ IL++Q +T+ A
Sbjct: 26 LIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLALKM-EEQRLSRAILVVQQPLTAFAK 84
Query: 144 KAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLK 201
A+ Q ++E+F ++L+VNIT H L P+H+ LT +EK LL++Y ++E QLPR+
Sbjct: 85 TAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRIQS 144
Query: 202 KDAIAQYYGLERGQVVKVTYSGEITESHVTYR-CV 235
D V+K+ E +VTYR CV
Sbjct: 145 SDP-----------VMKIIRPSETAGRYVTYRLCV 168
>gi|83315225|ref|XP_730701.1| RNA polymerase Rpb5 [Plasmodium yoelii yoelii 17XNL]
gi|23490506|gb|EAA22266.1| RNA polymerase Rpb5, C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 112
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 118 ISQIVNRDTLTGLILILQNQITSQATKAV--GLFQFKVEMFQITDLLVNITKHVLKPKHQ 175
+++ ++ ++ IL+ QN +T A A+ + +E F T+LLVNITKH L PKH
Sbjct: 6 LTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHI 65
Query: 176 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVK 218
LT EK LL++Y I+E +LPR+ D + +Y+GL +GQV K
Sbjct: 66 PLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108
>gi|253741620|gb|EES98486.1| RNA polymerase II subunit Rpb5a [Giardia intestinalis ATCC 50581]
Length = 229
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 27/214 (12%)
Query: 46 RRTVLEMLKDRGYAVALSEINL---------SVQDFRAIYGQDPDVDRL----RISISHQ 92
RRTV+EML DRGY V +I+ + QDF A + P ++ ++ S+
Sbjct: 14 RRTVVEMLIDRGYMVQSDDISPWSAEMLLGQTFQDFEAEFHTAPFSWKILGTHKLRKSNA 73
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT--LTGLILIL-----------QNQIT 139
+ ++ + V P I K +I + + N++T L +I ++ I
Sbjct: 74 NSLNQETIKVRPVPVIDK-ELIDKLRVETQNKETRPLDRIIYVIYGREGKKLDSPNKTIQ 132
Query: 140 SQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRM 199
++ +A + +E F +T LL+NIT+HVL PKH +L++ EK +LK+Y E Q+P +
Sbjct: 133 ARIDEAQRVNGIIIEHFLVTRLLINITRHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPII 192
Query: 200 LKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
D +A+Y GL VV+++ E + T+R
Sbjct: 193 ESSDPMARYLGLLPNDVVRISRPSETVGIYTTFR 226
>gi|68074991|ref|XP_679412.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500156|emb|CAI00596.1| hypothetical protein PB108754.00.0 [Plasmodium berghei]
Length = 117
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+VNITKH L P+H LT EK LL++Y I+E +LPR+ D + +Y+GL +GQVVK+
Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75
Query: 222 SGEITESHVTYRCV 235
E +VTYR V
Sbjct: 76 PSETAGRYVTYRLV 89
>gi|429965029|gb|ELA47026.1| hypothetical protein VCUG_01471 [Vavraia culicis 'floridensis']
Length = 223
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 116/220 (52%), Gaps = 21/220 (9%)
Query: 27 CLSGFVDNGSRD--------SLR-YYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
CLS + G + SLR YL R+T+LEML DRGY + ++D+
Sbjct: 9 CLSCAITMGVKPLKFLTPMTSLRNQYLVRKTMLEMLSDRGYPIK----EYQMKDYDEFVN 64
Query: 78 QDP----DVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILI 133
+ P D LRI + Q D + + V F + + ++ ++ I + + LI++
Sbjct: 65 KYPSCVKDTSNLRIIV--QKD-KEMLFVFFSDEEKMSLKNVKILVENI-EKQNIKNLIVV 120
Query: 134 LQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEE 193
L+ I+ A+K + +F+ +LL N+TKH L KH+++T +EKEKLL++ I+E
Sbjct: 121 LREGISPAASKFALECPVNITIFKEKELLFNVTKHSLVFKHRIITLEEKEKLLEEKKIKE 180
Query: 194 KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+Q+P++L D +A+Y G ++G V+++ E + +R
Sbjct: 181 EQMPKILVTDPVAKYLGAKKGDVLEIERESETAGFALYWR 220
>gi|380474201|emb|CCF45905.1| RNA polymerase Rpb5, partial [Colletotrichum higginsianum]
Length = 219
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 24/208 (11%)
Query: 36 SRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY--------------GQDPD 81
+++ R + + RT EM DRGY +A E+ +S+ F+ Y +P
Sbjct: 8 NKEVTRLWRAWRTAHEMAADRGYELAEDELKISLDRFKMEYTAADGSVNRGKLQFSANPS 67
Query: 82 VDRLR----ISISHQSDPSK---RILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILIL 134
D +R S +P+ + V F + I+ I +++ +G I++
Sbjct: 68 ADMIRKYTPPPTSQNPNPTPDCGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSG-IMVT 126
Query: 135 QNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE 192
++ A K + + KVE F DLLVNIT+H L PKH +L+ +EK LLK+Y ++
Sbjct: 127 HVPLSPAARKMLITXESFXKVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRYRLK 186
Query: 193 EKQLPRMLKKDAIAQYYGLERGQVVKVT 220
E QL +L+ L G+ +++
Sbjct: 187 ETQLXXILQXAPSXSTSVLSAGRXSRIS 214
>gi|327409963|ref|YP_004347383.1| DNA-directed RNA polymerase subunit RPB5 [Lausannevirus]
gi|326785137|gb|AEA07271.1| DNA-directed RNA polymerase subunit RPB5 [Lausannevirus]
Length = 198
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 91 HQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
H+ DP K V + K++ ++ + S+ + L +++I+++ + S+A V
Sbjct: 45 HEKDPEKFARVFWSLGSESKMSFVQQVFSEAAT-EKLNQIVIIVEHPLVSKAKTTVNSIT 103
Query: 151 FKVE--MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQY 208
V +F+I+D+ H L P H+ L+++EK+K+L+ Y +++++ PR+ D I Q+
Sbjct: 104 KIVNTCVFEISDVQFRKPSHKLVPPHRRLSEEEKQKVLEDYQVKKEKCPRISDLDPIVQW 163
Query: 209 YGLERGQVVKVTYSGEITESHVTYRCVW 236
YG G ++++ + + ++ TYR VW
Sbjct: 164 YGWSLGDLIEIQRAEGVFKNTKTYRIVW 191
>gi|326488034|dbj|BAJ89856.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 108
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 28 LSGFVDNGSR---DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR 84
+S VD G R +S R +L+RRT LEML+DRGY+V SE+ ++ +FRA + Q+P+++R
Sbjct: 15 MSSMVDRGGRASQESHRLFLARRTALEMLRDRGYSVPESELARTLPEFRAWWAQEPEIER 74
Query: 85 LRISISHQSDPSKRI 99
L S SD S ++
Sbjct: 75 LSFSTFLASDHSDKV 89
>gi|443920437|gb|ELU40353.1| hypothetical protein AG1IA_05623 [Rhizoctonia solani AG-1 IA]
Length = 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 21/135 (15%)
Query: 56 RGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIR 115
+GY VA E+N+ +Q F++ + DP+ +I + F V I+
Sbjct: 18 QGYLVAEDEMNMDIQTFKSTF----------------DDPTNQIFIFFADEKNV---TIK 58
Query: 116 SIISQIVNRDTLTGLILILQNQITSQATKAVGLF--QFKVEMFQITDLLVNITKHVLKPK 173
+I I++ +T I++ ++T A K + Q+ +E F DLLVNIT H L P+
Sbjct: 59 TIFLGILDEKGITHGIIVFMEKMTPSARKVISAMSSQYSLEEFAEADLLVNITHHKLVPQ 118
Query: 174 HQVLTDQEKEKLLKK 188
HQVLT EK+ LL++
Sbjct: 119 HQVLTQVEKKALLER 133
>gi|146083994|ref|XP_001464894.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
gi|134068989|emb|CAM67132.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
Length = 342
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI-----------TSQATKAVG 147
++V F G + + + S + + + + ++I+ N+I + + +A G
Sbjct: 196 LMVFFSGSPKLSIKEVHSFREKALKK--MASSMIIVTNKIDPGVRMDVQELSGRMDEATG 253
Query: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
+++F+ L N+ +H P+H LT E E L + + QLPRM + D + Q
Sbjct: 254 AELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQ 313
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235
Y GL+RG +V +T G+ + + YR V
Sbjct: 314 YLGLQRGSIVHITREGKQSGPYSMYRHV 341
>gi|398013801|ref|XP_003860092.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
gi|322498311|emb|CBZ33385.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
Length = 342
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI-----------TSQATKAVG 147
++V F G + + + S + + + + ++I+ N+I + + +A G
Sbjct: 196 LMVFFSGSPKLSIKEVHSFREKALKK--MASSMIIVTNKIDPGVRMDVQELSGRMDEATG 253
Query: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
+++F+ L N+ +H P+H LT E E L + + QLPRM + D + Q
Sbjct: 254 AELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQ 313
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235
Y GL+RG +V +T G+ + + YR V
Sbjct: 314 YLGLQRGSIVHITREGKQSGPYSMYRHV 341
>gi|119587531|gb|EAW67127.1| hCG1640002 [Homo sapiens]
Length = 90
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 56/86 (65%)
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
++ +E F LL++IT++ L P++ V+T +E LL Y + E QLPR+ DA+A+Y+
Sbjct: 4 KYILEQFLQQKLLIDITEYELVPEYVVMTKEEVTVLLALYKLRENQLPRIQAGDAVARYF 63
Query: 210 GLERGQVVKVTYSGEITESHVTYRCV 235
G++ GQVVK+ E+ ++TYR +
Sbjct: 64 GIKHGQVVKIIRPSEMAGRYLTYRLM 89
>gi|308158149|gb|EFO60958.1| RNA polymerase II subunit Rpb5b [Giardia lamblia P15]
Length = 201
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 8/188 (4%)
Query: 49 VLEMLKDRGYAVALSE--INLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGP 106
VLEM +DRGY + E I LS ++ + D +V+ LR S VV+
Sbjct: 16 VLEMYRDRGYELGPLEKQIGLSAEEIGRLI--DDNVNNLRPLWFVTIKGSVAAAVVY--- 70
Query: 107 GIVKVNVIRSIISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVEMFQITDLLVNI 165
I+ + I Q V+++ + + + TS + + +++++ + LL+N
Sbjct: 71 SILPWVDASAAIGQYVDQEAVQKCLFVYFGGPATSCRLEHRVINDVEIDIYDFSQLLINP 130
Query: 166 TKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEI 225
TKH L PKH +L++ EK K+L + + E Q+P + D I ++Y + G ++++T +
Sbjct: 131 TKHRLVPKHTILSNTEKAKVLAELRVTEAQIPLIQASDPIMRWYDAKPGDLIRITRTSGS 190
Query: 226 TESHVTYR 233
H+ YR
Sbjct: 191 AGKHLYYR 198
>gi|149034610|gb|EDL89347.1| rCG29511, isoform CRA_c [Rattus norvegicus]
Length = 146
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 79/146 (54%), Gaps = 8/146 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKP 172
++ +E F +LL+NIT+H P
Sbjct: 121 MAPKYVLEQFLQQELLINITEHEQAP 146
>gi|157867863|ref|XP_001682485.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
gi|68125939|emb|CAJ03745.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
Length = 342
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 137 QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+++ + +A G +++F+ L N+ +H P+H LT E E L + + QL
Sbjct: 243 ELSGRMDEATGAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQL 302
Query: 197 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
PRM + D + QY GL+RG +V +T G+ + + YR V
Sbjct: 303 PRMQESDPLVQYLGLQRGSIVHITREGKQSGPYSMYRHV 341
>gi|401419206|ref|XP_003874093.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490327|emb|CBZ25587.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 342
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 99 ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQI-----------TSQATKAVG 147
+++ F G + V + S + + + + ++I+ N+I + + +A G
Sbjct: 196 LMIFFSGSPKLSVKEVHSFREKALKKKASS--MIIVANKIDPGVRMDVQELSGRMDEATG 253
Query: 148 LFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
+++F+ L N+ +H P H LT E E L + + QLPRM + D + Q
Sbjct: 254 AELLSIQVFEEEALAFNVVRHETVPGHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQ 313
Query: 208 YYGLERGQVVKVTYSGEITESHVTYRCV 235
Y GL+RG +V +T G+ + + YR V
Sbjct: 314 YLGLQRGSIVHITREGKQSGPYSMYRHV 341
>gi|328853206|gb|EGG02346.1| hypothetical protein MELLADRAFT_91445 [Melampsora larici-populina
98AG31]
Length = 67
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+V+ EK LL +Y + + QLPR+ D IA+YYGL+RGQVV++ E +V+
Sbjct: 3 PKHEVMKPAEKAALLARYRLHDTQLPRIQLNDPIARYYGLKRGQVVRIIRPSETAGRYVS 62
Query: 232 YR 233
YR
Sbjct: 63 YR 64
>gi|284504393|ref|YP_003407108.1| RNAP subunit Rpb5 [Marseillevirus]
gi|282935831|gb|ADB04146.1| RNAP subunit Rpb5 [Marseillevirus]
Length = 193
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 32/209 (15%)
Query: 40 LRYYLSR--RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSK 97
+ + LSR +TV+ M+ DRGY + L + D + ++P I +++ K
Sbjct: 1 MDFQLSRAKKTVVRMMSDRGY-LPLKRL----PDPKGSSSREP------ICWEFENEQQK 49
Query: 98 RILVVFCGPGIVKVNVIRS--------IISQIVNRDTLTGLILILQNQITSQATKAVGLF 149
+ V + N+ RS + ++ D L +++++ + S+ V
Sbjct: 50 KANVFW--------NLDRSESKMPFIQYVFEVAVMDKLEQVVIVVDKGLVSKGKNTVSSM 101
Query: 150 QFKVEM--FQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ 207
V+M F+++DL V HV P H+ L++++K + L+KY +E + P++LK D + +
Sbjct: 102 SENVDMTVFEVSDLQVITPDHVDVPPHKKLSEKKKRETLEKYGVELDKCPKILKDDPVVK 161
Query: 208 YYGLERGQVVKVTYSGEIT-ESHVTYRCV 235
+YG G ++K+ GE V YR V
Sbjct: 162 WYGWSCGDLIKILQPGEGNFGPSVNYRVV 190
>gi|356927751|gb|AET42541.1| hypothetical protein EXVG_00192 [Emiliania huxleyi virus 202]
Length = 213
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
Query: 51 EMLKDRGYAVALSEINLSVQDFRAI-YGQDPDVDRLRISISHQSDPSKRILVVFCGPGIV 109
EML RGY I V + AI Y + L S S++ P +V F V
Sbjct: 31 EMLTARGYEC----IKGDVTSYGAIEYSMENTTPLLTGSFSNRCRPDS--VVYFFNELKV 84
Query: 110 KVNVIRSIISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVEMFQITDLLVNITKH 168
V ++R ++ ++ LIL+ +Q +S+ + VE + NITKH
Sbjct: 85 GVKIVRDLLEKLDATPESVHLILVSVQGSTSSRPAHKMD----HVEFLTYKQMSFNITKH 140
Query: 169 VLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS--GEIT 226
VL PKH + ++ + ++ ++ + + P ML DA+A + + G ++++ S G +T
Sbjct: 141 VLVPKHTYIDKEQADVIINSFTAKPENFPMMLSTDAMAVFCHFKIGDLIRIDRSSMGGVT 200
Query: 227 ESHVTYRCV 235
E VTYR V
Sbjct: 201 EGGVTYRLV 209
>gi|253741540|gb|EES98408.1| RNA polymerase II subunit Rpb5b [Giardia intestinalis ATCC 50581]
Length = 201
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 30/199 (15%)
Query: 49 VLEMLKDRGYAVA--LSEINLSVQDFRAIYGQ--DPDVDRLRISISHQSDPSKRILVVFC 104
VLEM +DRGY + ++ L+ ++ GQ D +V LR +V
Sbjct: 16 VLEMCRDRGYDIESLRKQMGLTAEEM----GQLIDNNVSNLR----------PLWFIVTK 61
Query: 105 GPGIVKVNVIRSI---------ISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVE 154
GP V V+ S+ I Q ++++ + + I TS ++ + +++
Sbjct: 62 GP--VATAVVYSVLPWADASAAIGQYLDQEAVQKCLFIYFGGPTTSCRSEHRVINDVEID 119
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
++ + L+N TKH L PKH +L+ EK ++L + + E Q+P + D I ++Y + G
Sbjct: 120 IYDFSQFLINPTKHSLVPKHTILSSTEKARVLAELRVTEAQIPLIQASDPIMRWYDAKPG 179
Query: 215 QVVKVTYSGEITESHVTYR 233
+++V + T H+ YR
Sbjct: 180 DLIRVMRTSSSTGKHLYYR 198
>gi|357456709|ref|XP_003598635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355487683|gb|AES68886.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 124
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 20 NGEPTES-CLSGFVDNGSR-DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
NG T S CL + S +++RY+ R+T+++ML DRGY V+ S++ LS+ +FR+ +G
Sbjct: 6 NGNETRSECLVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFG 65
Query: 78 QDPDVDRLRISISHQSDPSKRIL 100
+ P L +S+S +S+PS ++L
Sbjct: 66 EFPKPHTLGVSVSLRSNPSIKVL 88
>gi|154335547|ref|XP_001564012.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061043|emb|CAM38062.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 137 QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+++ + +A G +++F+ L N+ +H P H L+ E L + + QL
Sbjct: 223 ELSGRMDEATGAELLSIQVFEEEALAFNVVRHETVPHHVALSPTEAAMFLAERKLNVSQL 282
Query: 197 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
PRML+ D + QY GL RG +V +T G+ + + YR V
Sbjct: 283 PRMLESDPLVQYLGLHRGSIVHITREGKQSGPYSMYRHV 321
>gi|159118208|ref|XP_001709323.1| RNA polymerase II subunit Rpb5b [Giardia lamblia ATCC 50803]
gi|21842214|gb|AAM77736.1|AF510644_1 RNA polymerase II subunit Rpb5b [Giardia intestinalis]
gi|157437439|gb|EDO81649.1| RNA polymerase II subunit Rpb5b [Giardia lamblia ATCC 50803]
Length = 201
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 49 VLEMLKDRGYAVALSE--INLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGP 106
VLEM +DRGY + E + LS ++ + D +V LR ++ GP
Sbjct: 16 VLEMYRDRGYEMGPLEKQMGLSAEEVGRLI--DDNVTNLR----------PLWFIITKGP 63
Query: 107 GIVKVNVIRSI---------ISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVEMF 156
V V+ SI I Q V+++ + + + S ++ + +V++
Sbjct: 64 --VATAVVYSILPWVDASAAIGQYVDQEAVQKCLFVYFGGPAISCRSEHRVINDVEVDIH 121
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
+ L+N TKH L PKH +L++ EK ++L + + E Q+P + D I ++Y + G +
Sbjct: 122 DFSQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIPLIQTSDPIMRWYDAKPGDL 181
Query: 217 VKVTYSGEITESHVTYR 233
+++T + H+ YR
Sbjct: 182 IRITRTSGSAGKHLYYR 198
>gi|209738396|gb|ACI70067.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 159
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +F++ +G P R R +
Sbjct: 2 DDDEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T +++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKH 168
++ +E F +LL+NIT+H
Sbjct: 121 MAPKYILEQFLQQELLINITEH 142
>gi|261403648|ref|YP_003247872.1| DNA-directed RNA polymerase subunit H [Methanocaldococcus vulcanius
M7]
gi|261370641|gb|ACX73390.1| RNA polymerase Rpb5 [Methanocaldococcus vulcanius M7]
Length = 84
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 49/75 (65%)
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+++ +T H+L PKH+++ +E +++LKKY+I+ +QLP++ + D + Q G + G V+K+T
Sbjct: 5 IILKVTNHILVPKHEIVPKEEVDEILKKYNIKIQQLPKIYEDDPVIQEIGAKEGDVIKIT 64
Query: 221 YSGEITESHVTYRCV 235
+ + YR V
Sbjct: 65 RNSPTAGLSIAYRLV 79
>gi|342184880|emb|CCC94362.1| putative DNA-directed RNA polymerase II [Trypanosoma congolense
IL3000]
Length = 292
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+++F+ +L NIT+H PKH VLT E ++ L+ + + QLPR+L D I Y LE
Sbjct: 209 IQIFEEEELSYNITRHSSVPKHVVLTPCEAKEFLQNWKLTPTQLPRILDSDPIVGYLNLE 268
Query: 213 RGQVVKV 219
RG ++++
Sbjct: 269 RGSIIRI 275
>gi|315426561|dbj|BAJ48191.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
gi|343485293|dbj|BAJ50947.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
Length = 76
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++IT+HVL PKH+VL+ +E E+LL++Y + +LP + D + + + G ++K+
Sbjct: 1 MDITEHVLVPKHEVLSPEEAEELLRRYGVSRDKLPYIHPSDPMVKRLKAKSGDIIKIIRR 60
Query: 223 GEITESHVTYRCVW 236
E V YR VW
Sbjct: 61 SETAGEAVYYRVVW 74
>gi|71664578|ref|XP_819268.1| DNA-directed RNA polymerase II [Trypanosoma cruzi strain CL Brener]
gi|70884562|gb|EAN97417.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+++ + +L NI +H P+H+VL+ +E + L++ I QLPR+LK+D + Y G
Sbjct: 197 MSIQLLEEDELAYNIARHETVPQHEVLSPEEAQLFLQQRQISLSQLPRILKEDPMVAYLG 256
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RG +VK+ + + + YR V
Sbjct: 257 LARGSIVKIHRDTKESGPYEMYRQV 281
>gi|407846765|gb|EKG02756.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+++ + +L NI +H P+H+VL+ +E + L++ I QLPR+LK+D + Y G
Sbjct: 197 MSIQLLEEDELAYNIARHDTVPQHEVLSPEEAQLFLQQRQISLSQLPRILKEDPMVAYLG 256
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RG +VK+ + + + YR V
Sbjct: 257 LARGSIVKIHRDTKESGPYEMYRQV 281
>gi|296109334|ref|YP_003616283.1| RNA polymerase Rpb5 [methanocaldococcus infernus ME]
gi|295434148|gb|ADG13319.1| RNA polymerase Rpb5 [Methanocaldococcus infernus ME]
Length = 78
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ +T H+L PKH++L+ +E E+LLKK I+ +QLP++ + D + Q G + G VVK+
Sbjct: 1 MKVTDHILVPKHEILSKEEVEELLKKLRIKIQQLPKIYEDDPVIQEIGAKEGDVVKIIRE 60
Query: 223 GEITESHVTYRCV 235
+ V YR V
Sbjct: 61 SPTAGTFVAYRLV 73
>gi|449299839|gb|EMC95852.1| hypothetical protein BAUCODRAFT_34618, partial [Baudoinia
compniacensis UAMH 10762]
Length = 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 33 DNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD------------- 79
D SR+ R + RT +M DRGY + E N+S DF+ Y +
Sbjct: 4 DAASREQSRLWRILRTAKQMCYDRGYELTEDECNISFDDFKTQYCDESGAPQRTRMNFTA 63
Query: 80 ---PDVDRLRISISHQSDPSKR-----ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLI 131
P++++ + S+P I V F + + +++ + ++ TG I
Sbjct: 64 RPTPEMNKKYSPLPKPSNPDPAPDIGTIFVQFNSDPNIGIKHLKTFAQLLSEKNLHTG-I 122
Query: 132 LILQNQITSQATKAVG-LFQFKVEMFQITDLLVNITKHVLKPKHQVLT 178
+ Q T+ A K + + +E+F+ DLLVNI++H L PKH +L+
Sbjct: 123 YVSQAAPTASALKIIPTIAPLVMEIFREEDLLVNISRHELVPKHTLLS 170
>gi|71660311|ref|XP_821873.1| DNA-directed RNA polymerase II [Trypanosoma cruzi strain CL Brener]
gi|19718718|gb|AAL96366.1|AC116314_3 Tcc44h21-2.3 [Trypanosoma cruzi]
gi|70887262|gb|EAO00022.1| DNA-directed RNA polymerase II, putative [Trypanosoma cruzi]
Length = 282
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+++ + +L NI +H P+H+VL+ +E L++ I QLPR+LK+D + Y G
Sbjct: 197 MSIQLLEEDELAYNIARHDTVPQHEVLSPEEARLFLQQRQISLSQLPRILKEDPMVAYLG 256
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RG +VK+ + + + YR V
Sbjct: 257 LARGSIVKIHRDTKESGPYEMYRQV 281
>gi|149627161|ref|XP_001508228.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Ornithorhynchus anatinus]
Length = 60
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 177 LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+T +E +LL +Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 1 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59
>gi|224087898|ref|XP_002198655.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Taeniopygia guttata]
Length = 119
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKA 145
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A ++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRALIVVQQGMTPSAKQS 117
>gi|333911405|ref|YP_004485138.1| DNA-directed RNA polymerase subunit H [Methanotorris igneus Kol 5]
gi|333751994|gb|AEF97073.1| DNA-directed RNA polymerase subunit H [Methanotorris igneus Kol 5]
Length = 77
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H+L PKH+++ +E KLL+KY I+ +QLP++ D + + G + G V+K+T
Sbjct: 1 MKVSSHILVPKHEIVPKEEVPKLLQKYGIKIQQLPKIFDTDPVVKEIGAKEGDVIKITRK 60
Query: 223 GEITESHVTYRCV 235
V YR V
Sbjct: 61 SPTAGETVAYRLV 73
>gi|289193122|ref|YP_003459063.1| RNA polymerase Rpb5 [Methanocaldococcus sp. FS406-22]
gi|288939572|gb|ADC70327.1| RNA polymerase Rpb5 [Methanocaldococcus sp. FS406-22]
Length = 78
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ +T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G V+++ +
Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVIRIIRN 60
Query: 223 GEITESHVTYRCV 235
V YR V
Sbjct: 61 SPTAGVSVAYRLV 73
>gi|15669228|ref|NP_248033.1| DNA-directed RNA polymerase subunit H [Methanocaldococcus
jannaschii DSM 2661]
gi|2500629|sp|Q58443.1|RPOH_METJA RecName: Full=DNA-directed RNA polymerase subunit H
gi|4930045|pdb|1HMJ|A Chain A, Solution Structure Of Rna Polymerase Subunit H
gi|1591692|gb|AAB99042.1| DNA-directed RNA polymerase, subunit H (rpoH) [Methanocaldococcus
jannaschii DSM 2661]
Length = 78
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ +T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G VV+V
Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 61 SPTAGVSIAYRLV 73
>gi|256811201|ref|YP_003128570.1| DNA-directed RNA polymerase subunit H [Methanocaldococcus fervens
AG86]
gi|256794401|gb|ACV25070.1| RNA polymerase Rpb5 [Methanocaldococcus fervens AG86]
Length = 78
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G VV++
Sbjct: 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRIIRKS 61
Query: 224 EITESHVTYRCV 235
V YR V
Sbjct: 62 PTAGVSVAYRLV 73
>gi|46668|emb|CAA32923.1| unnamed protein product [Sulfolobus acidocaldarius]
Length = 88
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++I+ H L PKH++L +E KL+K+ I+ +QLP + D +A+ G + G ++K+T
Sbjct: 13 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 72
Query: 223 GEITESHVTYRCV 235
T VTYR V
Sbjct: 73 SPFTGESVTYRYV 85
>gi|70606497|ref|YP_255367.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
DSM 639]
gi|449066709|ref|YP_007433791.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
N8]
gi|449068983|ref|YP_007436064.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
Ron12/I]
gi|1173165|sp|P11521.2|RPOH_SULAC RecName: Full=DNA-directed RNA polymerase subunit H
gi|68567145|gb|AAY80074.1| DNA-directed RNA polymerase, subunit H [Sulfolobus acidocaldarius
DSM 639]
gi|449035217|gb|AGE70643.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
N8]
gi|449037491|gb|AGE72916.1| DNA-directed RNA polymerase subunit H [Sulfolobus acidocaldarius
Ron12/I]
Length = 84
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++I+ H L PKH++L +E KL+K+ I+ +QLP + D +A+ G + G ++K+T
Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68
Query: 223 GEITESHVTYRCV 235
T VTYR V
Sbjct: 69 SPFTGESVTYRYV 81
>gi|340057895|emb|CCC52247.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 282
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+V++F+ +L NI++H P+H L+ +E + L+K ++ QLPR+L D + Y
Sbjct: 197 LRVQLFEEDELSYNISRHQTVPRHVPLSSEEAQVFLQKRHLKISQLPRILDSDPMVAYLD 256
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RG +V++ E + YR V
Sbjct: 257 LSRGSIVRIVRHTPDGEPYEMYRQV 281
>gi|313765818|gb|ADR80315.1| RNA polymerase B5-subunit [Rutilus rutilus]
Length = 129
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++ +FR+ +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
++H DP+ ++ V F V + I+ + Q + + +T I+++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSL 118
>gi|448579176|ref|ZP_21644453.1| DNA-directed RNA polymerase subunit H [Haloferax larsenii JCM
13917]
gi|448589491|ref|ZP_21649650.1| DNA-directed RNA polymerase subunit H [Haloferax elongans ATCC
BAA-1513]
gi|445723855|gb|ELZ75491.1| DNA-directed RNA polymerase subunit H [Haloferax larsenii JCM
13917]
gi|445735919|gb|ELZ87467.1| DNA-directed RNA polymerase subunit H [Haloferax elongans ATCC
BAA-1513]
Length = 75
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D+E E +L++Y++E+ LP++ +KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTVLDDEEVESVLQEYNVEKTNLPKIKRKDP-ALPDDAEPGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|304315183|ref|YP_003850330.1| DNA-directed RNA polymerase, subunit H [Methanothermobacter
marburgensis str. Marburg]
gi|302588642|gb|ADL59017.1| DNA-directed RNA polymerase, subunit H [Methanothermobacter
marburgensis str. Marburg]
Length = 77
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
I KH L P+H VL D E +++LK+ +QLP++ D + + G +RG +VK+
Sbjct: 5 ILKHHLVPEHVVLNDSEAKRVLKELDAHPEQLPKIKTTDPVVKAIGAKRGDIVKIIRKSP 64
Query: 225 ITESHVTYRCV 235
E +TYR V
Sbjct: 65 TAEEFITYRLV 75
>gi|15679061|ref|NP_276178.1| DNA-directed RNA polymerase subunit H [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685896|sp|O27122.1|RPOH_METTH RecName: Full=DNA-directed RNA polymerase subunit H; AltName:
Full=RPB5
gi|9257044|pdb|1EIK|A Chain A, Solution Structure Of Rna Polymerase Subunit Rpb5 From
Methanobacterium Thermoautotrophicum
gi|2622147|gb|AAB85539.1| DNA-dependent RNA polymerase, subunit H [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 77
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
I KH L P+H +L + E +++LK+ +QLP++ D +A+ G +RG +VK+
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 225 ITESHVTYRCV 235
E VTYR V
Sbjct: 65 TAEEFVTYRLV 75
>gi|195164197|ref|XP_002022935.1| GL16452 [Drosophila persimilis]
gi|194104997|gb|EDW27040.1| GL16452 [Drosophila persimilis]
Length = 126
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQSDPSKRIL 100
R+TV EM DRGY V E++ +V+ F ++G P R L + ++H DP R+L
Sbjct: 18 RKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLTHADDPKNRML 77
Query: 101 VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
V F V V I++ +++ R T G + L ++S+ K
Sbjct: 78 VFFPEEPKVAVRTIKAFANRMRPR-TFIGPSVCLGVVVSSKELK 120
>gi|347482170|gb|AEO98111.1| hypothetical protein ELVG_00363 [Emiliania huxleyi virus 203]
gi|347601164|gb|AEP15650.1| hypothetical protein EQVG_00241 [Emiliania huxleyi virus 207]
gi|347601632|gb|AEP16117.1| hypothetical protein ERVG_00241 [Emiliania huxleyi virus 208]
gi|357972721|gb|AET97994.1| hypothetical protein EPVG_00106 [Emiliania huxleyi virus 201]
Length = 214
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 14/193 (7%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAI-YGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R EML RGY I V + I Y + L S S++ P ++ F
Sbjct: 27 RVAREMLSARGYGC----IEGDVTSYSTIEYAMENTTPLLTGSFSNRCRPDS--VIYFFN 80
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVEMFQITDLLVN 164
V V ++R ++ ++ LIL+ +Q +S+ + VE + N
Sbjct: 81 ELKVGVKIVRDLLEKLGATPESVHLILVSVQGGTSSRPAHKME----NVEFITYKQISYN 136
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS-- 222
ITKHVL H + ++ + ++ ++ + + P ML D +A + + G ++++ S
Sbjct: 137 ITKHVLVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSSL 196
Query: 223 GEITESHVTYRCV 235
G +TE +TYR V
Sbjct: 197 GGVTEGGITYRLV 209
>gi|320101551|ref|YP_004177143.1| DNA-directed RNA polymerase subunit H [Desulfurococcus mucosus DSM
2162]
gi|319753903|gb|ADV65661.1| DNA-directed RNA polymerase, subunit H [Desulfurococcus mucosus DSM
2162]
Length = 83
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ +H L PKH++L +E ++LKK +E QLP + D +A+ G + G +VKV
Sbjct: 5 INVLEHELVPKHEILPPEEAYQVLKKLGVEPWQLPWISINDPVAKAIGAKPGDIVKVIRK 64
Query: 223 GEITESHVTYRCV 235
+TYR V
Sbjct: 65 SPTAGEFITYRYV 77
>gi|11499469|ref|NP_070710.1| DNA-directed RNA polymerase subunit H [Archaeoglobus fulgidus DSM
4304]
gi|6685900|sp|O28394.1|RPOH_ARCFU RecName: Full=DNA-directed RNA polymerase subunit H
gi|2648663|gb|AAB89370.1| DNA-directed RNA polymerase, subunit H (rpoH) [Archaeoglobus
fulgidus DSM 4304]
Length = 76
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H+L PKH+VL+ +E E+LLK I ++QLP++ D IA+ G + G +VK+T
Sbjct: 5 LQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSL 64
Query: 225 ITESHVTYRCV 235
V YR V
Sbjct: 65 TAGESVFYRLV 75
>gi|332157776|ref|YP_004423055.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
gi|331033239|gb|AEC51051.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
Length = 82
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI HVL P+H+VL+++EKE LLKKY I QLP++ D + + G + G ++++
Sbjct: 8 NIFDHVLVPEHRVLSEEEKEALLKKYRITPAQLPQIKASDPVVKALGAKPGDIIEI 63
>gi|73852578|ref|YP_293862.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
gi|72415294|emb|CAI65531.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
gi|347481669|gb|AEO97655.1| hypothetical protein ENVG_00375 [Emiliania huxleyi virus 84]
gi|347600560|gb|AEP15047.1| hypothetical protein EOVG_00110 [Emiliania huxleyi virus 88]
Length = 214
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 14/193 (7%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAI-YGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R EML RGY I V + I Y + L S S++ P ++ F
Sbjct: 27 RVAREMLSARGYGC----IEGDVTSYSTIEYAMENTTPLLTGSFSNRCRPDS--VIYFFN 80
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVEMFQITDLLVN 164
V V ++R ++ ++ LIL+ + +S+ T + VE + N
Sbjct: 81 ELKVGVKIVRDLLEKLGATPESVHLILVSVHGGTSSRPTHKME----NVEFITYKQISYN 136
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS-- 222
ITKH+L H + ++ + ++ ++ + + P ML D +A + + G ++++ S
Sbjct: 137 ITKHILVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSSL 196
Query: 223 GEITESHVTYRCV 235
G +TE +TYR V
Sbjct: 197 GGVTEGGITYRLV 209
>gi|283481324|emb|CAZ69440.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 99B1]
Length = 214
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 14/193 (7%)
Query: 47 RTVLEMLKDRGYAVALSEINLSVQDFRAI-YGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R EML RGY I V + I Y + L S S++ P ++ F
Sbjct: 27 RVAREMLSARGYGC----IEGDVTSYSTIEYAMENTTPLLTGSFSNRCRPDS--VIYFFN 80
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILI-LQNQITSQATKAVGLFQFKVEMFQITDLLVN 164
V V ++R ++ ++ LIL+ +Q +S+ + VE + N
Sbjct: 81 ELKVGVKIVRDLLEKLGATPESVHLILVSVQGGTSSRPAHKME----NVEFITYKQISYN 136
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS-- 222
ITKH+L H + ++ + ++ ++ + + P ML D +A + + G ++++ S
Sbjct: 137 ITKHILVKPHTYIDKEQADVIINSFAAKPEHFPMMLSTDPMAVFCHYKIGDLIEIDRSSL 196
Query: 223 GEITESHVTYRCV 235
G +TE +TYR V
Sbjct: 197 GGVTEGGITYRLV 209
>gi|71748954|ref|XP_827816.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833200|gb|EAN78704.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|84619250|emb|CAJ43705.1| RNA polymerase I subunit 1RPB5 [Trypanosoma brucei brucei]
gi|261333513|emb|CBH16508.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 299
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 152 KVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGL 211
++++F+ +L NI++H PKH +TD E L++ + QLPR+L D + +Y L
Sbjct: 215 RIQVFEEDELAYNISRHQSVPKHVPMTDVEVRAFLEQRKLMITQLPRILNDDPMVEYLDL 274
Query: 212 ERGQVVKVTYSGEITESHVTYRCV 235
RG ++++ + ++ YR V
Sbjct: 275 PRGSIIRIERRTDEGSTYEMYRHV 298
>gi|374635615|ref|ZP_09707210.1| RNA polymerase Rpb5 [Methanotorris formicicus Mc-S-70]
gi|373561681|gb|EHP87910.1| RNA polymerase Rpb5 [Methanotorris formicicus Mc-S-70]
Length = 77
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H+L PKH+++ +E +LL++Y I+ +QLP++L D + + G + G V+K+T
Sbjct: 1 MKVSSHILVPKHEIVPKEEVPELLRRYGIKIQQLPKILDIDPVVKEIGAKEGDVIKITRK 60
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 61 SSTAGEVIVYRLV 73
>gi|20140154|sp|Q976A3.2|RPOH_SULTO RecName: Full=DNA-directed RNA polymerase subunit H
gi|342306130|dbj|BAK54219.1| DNA-directed RNA polymerase subunit H [Sulfolobus tokodaii str. 7]
Length = 84
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
M + + ++ ++H L PKH+VL+ +E K+LK+ I+ +QLP + D IA+ G + G
Sbjct: 1 MRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPG 60
Query: 215 QVVKVTYSGEITESHVTYRCV 235
++K+T ++ V YR V
Sbjct: 61 DIIKITRKSSLSGEVVVYRYV 81
>gi|15920467|ref|NP_376136.1| DNA-directed RNA polymerase subunit H [Sulfolobus tokodaii str. 7]
Length = 99
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++ ++H L PKH+VL+ +E K+LK+ I+ +QLP + D IA+ G + G ++K+T
Sbjct: 24 IDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIKITRK 83
Query: 223 GEITESHVTYRCV 235
++ V YR V
Sbjct: 84 SSLSGEVVVYRYV 96
>gi|333986469|ref|YP_004519076.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. SWAN-1]
gi|333824613|gb|AEG17275.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. SWAN-1]
Length = 77
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I KH L P H +L+ E +K+LK+ I ++QLP++ D +A+ G + G ++++T
Sbjct: 4 DILKHKLVPDHTILSKTEAKKILKELDIHQEQLPKIKVDDPVAKAIGAKPGDILEITRKS 63
Query: 224 EITESHVTYRCV 235
+ VTYR V
Sbjct: 64 QTAGKFVTYRLV 75
>gi|15079165|ref|NP_149917.1| 454R [Invertebrate iridescent virus 6]
gi|82011977|sp|Q91F72.1|454R_IIV6 RecName: Full=Putative DNA-directed RNA polymerase subunit 454R
gi|15042534|gb|AAK82314.1|AF303741_455 454R [Invertebrate iridescent virus 6]
Length = 184
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 118 ISQIVN--RDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQ 175
+SQI++ + + +I IT+ K + KVE+F DL +NITK+ L+P
Sbjct: 59 LSQIIDFSSNEYVCVTIICDGSITTNVKKIEQTTKGKVEIFHNKDLQMNITKYHLQPLFN 118
Query: 176 VLTDQEKEKLLKKY---SIEE------KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEIT 226
L D+E + KKY IE + P M K D IA+++ + G V+K+T
Sbjct: 119 KLLDEEAKDFKKKYIKCKIENGKKIILQSFPSMSKSDPIARFFKYQSGDVIKITNK---- 174
Query: 227 ESHVTYRCV 235
+ V+YR V
Sbjct: 175 DGFVSYRIV 183
>gi|215399667|gb|ACJ65826.1| RNA polymerase II [Oreochromis niloticus]
Length = 108
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDP 95
R + R+T++++ DRGY V E++ ++++F++ +G P R R + ++H DP
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 96 SKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQA 142
+ ++ V F V + I+ + Q + + +T I+++Q +T A
Sbjct: 61 TDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSA 106
>gi|385805647|ref|YP_005842045.1| DNA-directed RNA polymerase subunit H [Fervidicoccus fontis Kam940]
gi|383795510|gb|AFH42593.1| DNA-directed RNA polymerase subunit H [Fervidicoccus fontis Kam940]
Length = 81
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
++ HVL PKH+ + E K+LK+ ++ QLP + D +A+ G + G++VK+T
Sbjct: 7 SVQDHVLVPKHERIPITEVPKVLKELNVSINQLPLIRSSDPVAREIGAKPGELVKITRRD 66
Query: 224 EITESHVTYRCV 235
EIT V YR V
Sbjct: 67 EITGESVVYRLV 78
>gi|22902245|gb|AAH37681.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|148699663|gb|EDL31610.1| mCG13422, isoform CRA_c [Mus musculus]
Length = 96
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRS 116
++H DP+ ++ V F G + V+ S
Sbjct: 62 VAHNDDPTDQMFVFFPGEALGLAGVVSS 89
>gi|433592805|ref|YP_007282301.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natrinema
pellirubrum DSM 15624]
gi|433307585|gb|AGB33397.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natrinema
pellirubrum DSM 15624]
Length = 75
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D E E++L +Y+I+ LP++ + DA A E G V+++
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEVLTEYNIDRTDLPKIKRNDA-ALPDDAEVGDVIRIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRLV 73
>gi|146302817|ref|YP_001190133.1| DNA-directed RNA polymerase subunit H [Metallosphaera sedula DSM
5348]
gi|172046880|sp|A4YCQ7.1|RPOH_METS5 RecName: Full=DNA-directed RNA polymerase subunit H
gi|145701067|gb|ABP94209.1| DNA-directed RNA polymerase, subunit H [Metallosphaera sedula DSM
5348]
Length = 83
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++ + HVL PKH+VL+ +E K+LK+ I +QLP M D +A+ + G +VK+T
Sbjct: 8 IDPSVHVLVPKHEVLSVEEAFKVLKELGIGPEQLPWMRASDPMARTINAKPGDIVKITRK 67
Query: 223 GEITESHVTYRCV 235
I V YR V
Sbjct: 68 SPIVGELVVYRYV 80
>gi|327401235|ref|YP_004342074.1| DNA-directed RNA polymerase subunit H [Archaeoglobus veneficus
SNP6]
gi|327316743|gb|AEA47359.1| DNA-directed RNA polymerase subunit H [Archaeoglobus veneficus
SNP6]
Length = 77
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ HVL PKH+VL+ +E E+LLK ++ +QLP++ D +A+ G + G +V++
Sbjct: 6 LQDHVLVPKHEVLSKEEAEELLKTLGVKPEQLPKIRVDDPVAKEIGAKVGDIVRIIRESP 65
Query: 225 ITESHVTYRCV 235
V YR V
Sbjct: 66 TAGKTVAYRLV 76
>gi|312136878|ref|YP_004004215.1| DNA-directed RNA polymerase, subunit h [Methanothermus fervidus DSM
2088]
gi|311224597|gb|ADP77453.1| DNA-directed RNA polymerase, subunit H [Methanothermus fervidus DSM
2088]
Length = 79
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I KH L PKH VL+ E +K+LK +I+ ++LP++ D + + G + G ++K+
Sbjct: 5 DILKHELVPKHVVLSKSEAKKVLKDLNIDAEKLPKIRTSDPVVKVIGAKAGDIIKIIRKS 64
Query: 224 EITESHVTYRCV 235
VTYR V
Sbjct: 65 PTAGKFVTYRLV 76
>gi|374633175|ref|ZP_09705542.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Metallosphaera
yellowstonensis MK1]
gi|373524659|gb|EHP69536.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Metallosphaera
yellowstonensis MK1]
Length = 83
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
V+ HVL PKH+VL +E K+LK+ + +QLP + D +A+ G + G +VK+T
Sbjct: 8 VDPRDHVLVPKHEVLPVEEAYKILKELGVGPEQLPWLKASDPVAKVIGAKPGDIVKITRH 67
Query: 223 GEITESHVTYRCV 235
+ V YR V
Sbjct: 68 SPVVGELVVYRYV 80
>gi|390939173|ref|YP_006402911.1| RNA polymerase Rpb5 [Desulfurococcus fermentans DSM 16532]
gi|390192280|gb|AFL67336.1| RNA polymerase Rpb5 [Desulfurococcus fermentans DSM 16532]
Length = 83
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 160 DLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
D +NI +H L PKH+ LT +E ++LKK +E QLP + D + + G + G +V++
Sbjct: 2 DKKINILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGAKPGDIVRI 61
Query: 220 TYSGEITESHVTYRCV 235
VTYR V
Sbjct: 62 IRKSPTAGEFVTYRYV 77
>gi|218884687|ref|YP_002429069.1| DNA-directed RNA polymerase subunit H [Desulfurococcus
kamchatkensis 1221n]
gi|218766303|gb|ACL11702.1| DNA-directed RNA polymerase subunit H [Desulfurococcus
kamchatkensis 1221n]
Length = 83
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+NI +H L PKH+ LT +E ++LKK +E QLP + D + + G G +V++
Sbjct: 5 INILEHELVPKHETLTPEEAYEVLKKLGVEPWQLPWISINDPVIKAIGARPGDIVRIIRK 64
Query: 223 GEITESHVTYRCV 235
VTYR V
Sbjct: 65 SPTAGEFVTYRYV 77
>gi|389845817|ref|YP_006348056.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
gi|448616563|ref|ZP_21665273.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
gi|388243123|gb|AFK18069.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
gi|445751218|gb|EMA02655.1| DNA-directed RNA polymerase subunit H [Haloferax mediterranei ATCC
33500]
Length = 75
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H +L D+ E +L++Y++E+ LP++ +KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTLLDDEAVEDVLQEYNVEKTNLPKIKRKDP-ALPEDAEPGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|389860839|ref|YP_006363079.1| DNA-directed RNA polymerase subunit H [Thermogladius cellulolyticus
1633]
gi|388525743|gb|AFK50941.1| DNA-directed RNA polymerase subunit H [Thermogladius cellulolyticus
1633]
Length = 91
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+NI +HVL PKH+VL+ +E ++LKK + K LP + D A+ G G +++V
Sbjct: 7 INILEHVLVPKHEVLSPEEALEVLKKLGVSPKNLPWISVDDPAAKAVGARPGDIIRVVRK 66
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 67 SPTAGVAIAYRYV 79
>gi|336121475|ref|YP_004576250.1| DNA-directed RNA polymerase subunit H [Methanothermococcus
okinawensis IH1]
gi|334855996|gb|AEH06472.1| DNA-directed RNA polymerase subunit H [Methanothermococcus
okinawensis IH1]
Length = 78
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + PKH+V+ ++ KLL+KY I+ +QLP++ D + + G + G VVK+
Sbjct: 1 MKVSSHQMVPKHEVVPKEDIPKLLEKYGIKLQQLPKIFDTDPVIEEIGAKAGDVVKIIRK 60
Query: 223 GEITESHVTYRCV 235
E + YR V
Sbjct: 61 SPTAEESIYYRLV 73
>gi|14591330|ref|NP_143408.1| DNA-directed RNA polymerase subunit H [Pyrococcus horikoshii OT3]
gi|6685902|sp|O74019.1|RPOH_PYRHO RecName: Full=DNA-directed RNA polymerase subunit H
gi|3257975|dbj|BAA30658.1| 82aa long hypothetical DNA-directed RNA polymerase subunit Hprotein
[Pyrococcus horikoshii OT3]
Length = 82
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEI 63
>gi|389852854|ref|YP_006355088.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. ST04]
gi|388250160|gb|AFK23013.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. ST04]
Length = 82
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI HVL P+H+VL+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFDHVLVPEHRVLSEEEKKALLEKYKITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 68 PTAGVYYYYRIV 79
>gi|408402777|ref|YP_006860760.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363373|gb|AFU57103.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 82
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V IT H +PKH++L +E E++LKKY+ + QLP ++ D + + G ++K+T
Sbjct: 6 VVKITNHAYQPKHEILPKKEAEEILKKYNAKPSQLPYIMISDKALEDLDVRPGDIIKITR 65
Query: 222 SGEITESHVTYRCV 235
V YR V
Sbjct: 66 KSPTAGESVYYRYV 79
>gi|14520829|ref|NP_126304.1| DNA-directed RNA polymerase subunit H [Pyrococcus abyssi GE5]
gi|13124530|sp|Q9V116.1|RPOH_PYRAB RecName: Full=DNA-directed RNA polymerase subunit H
gi|5458045|emb|CAB49535.1| rpoH DNA-directed RNA polymerase, subunit H [Pyrococcus abyssi GE5]
gi|380741371|tpe|CCE70005.1| TPA: DNA-directed RNA polymerase subunit H [Pyrococcus abyssi GE5]
Length = 82
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEI 63
>gi|435852037|ref|YP_007313623.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5
[Methanomethylovorans hollandica DSM 15978]
gi|433662667|gb|AGB50093.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5
[Methanomethylovorans hollandica DSM 15978]
Length = 78
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
N+ + L PKH++L + E + +LK+Y IE +Q P++ D + Q G G VVK+T +
Sbjct: 5 NLLDNELIPKHEILGEDELKSVLKRYKIEREQFPKIKINDPVVQEIGASVGDVVKITRNS 64
Query: 224 EITESHVTYRCV 235
+ + YR V
Sbjct: 65 QTAGQALYYRLV 76
>gi|298674730|ref|YP_003726480.1| RNA polymerase Rpb5 [Methanohalobium evestigatum Z-7303]
gi|298287718|gb|ADI73684.1| RNA polymerase Rpb5 [Methanohalobium evestigatum Z-7303]
Length = 78
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+++ H L PKH++L E + +L Y I+++QLP++ D I Q G G VVK++
Sbjct: 4 ISLLDHELIPKHEILATDELQTVLNHYQIDKEQLPKIKSTDPIIQEIGALEGDVVKISRK 63
Query: 223 GEITESHVTYRCV 235
+ E + YR V
Sbjct: 64 SQTAEEGLYYRLV 76
>gi|149034615|gb|EDL89352.1| rCG29511, isoform CRA_f [Rattus norvegicus]
Length = 175
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISH 91
++ R + R+T++++ DRGY V E++ ++++F+A +G P R R + ++H
Sbjct: 5 EETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAH 64
Query: 92 QSDPSKRILVVFCGPG 107
DP+ ++ V F G G
Sbjct: 65 NDDPTDQMFVFFPGEG 80
>gi|399575809|ref|ZP_10769566.1| DNA-directed RNA polymerase subunit H [Halogranum salarium B-1]
gi|399238520|gb|EJN59447.1| DNA-directed RNA polymerase subunit H [Halogranum salarium B-1]
Length = 77
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++++H L P+H VL + E+ E++L++Y++E+ LP++ +KD + E G V+++
Sbjct: 1 MVDVSQHNLVPEHTVLDEPERVEEVLEEYNVEKTNLPKIKRKDPALRDTDAEVGDVIEIV 60
Query: 221 YSGEITESHVTYRCV 235
T+ V YR V
Sbjct: 61 RDSRTTDQAVVYRLV 75
>gi|448335250|ref|ZP_21524400.1| DNA-directed RNA polymerase subunit H [Natrinema pellirubrum DSM
15624]
gi|445617631|gb|ELY71225.1| DNA-directed RNA polymerase subunit H [Natrinema pellirubrum DSM
15624]
Length = 75
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D E E+ L +Y+I+ LP++ + DA A E G V+++
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEGLTEYNIDRTDLPKIKRNDA-ALPDDAEVGDVIRIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRLV 73
>gi|232954|gb|AAB19339.1| RNA polymerase II, partial [Homo sapiens]
Length = 48
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 189 YSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
Y + E QLPR+ D +A+Y+G++RGQVVK+ E ++TYR V
Sbjct: 1 YKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 47
>gi|383320558|ref|YP_005381399.1| DNA-directed RNA polymerase subunit H [Methanocella conradii HZ254]
gi|379321928|gb|AFD00881.1| DNA-directed RNA polymerase, subunit H [Methanocella conradii
HZ254]
Length = 79
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
N+ +H L P H +LT++E +++LKKY I QLP++ D + + G + G V+K+
Sbjct: 6 NVLEHELVPDHILLTEEETQEVLKKYGITRGQLPKIKASDVVVKQIGAKPGDVIKIIRKS 65
Query: 224 EITESHVTYRCV 235
V YR V
Sbjct: 66 LTAGRAVAYRLV 77
>gi|105923251|gb|ABF81466.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
Length = 1432
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 34/40 (85%)
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
QITDLLV+ITKHVL+PK + L ++K++L+ KY +E+KQ+
Sbjct: 13 QITDLLVSITKHVLQPKLERLPAEQKQQLVDKYKMEDKQM 52
>gi|297616212|ref|YP_003710351.1| DNA-directed RNA polymerase subunit H [Methanocella arvoryzae
MRE50]
Length = 79
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
N+ +H L P+H +L+++E ++LKKY+I + QLP++ D + + G + G V+K+
Sbjct: 6 NVLEHELVPEHILLSEEEAAEVLKKYNISKGQLPKIKTSDVVVKQIGAQPGDVIKIIRKS 65
Query: 224 EITESHVTYRCV 235
V YR V
Sbjct: 66 LTAGKAVAYRLV 77
>gi|448383938|ref|ZP_21562936.1| DNA-directed RNA polymerase subunit H [Haloterrigena thermotolerans
DSM 11522]
gi|445658927|gb|ELZ11739.1| DNA-directed RNA polymerase subunit H [Haloterrigena thermotolerans
DSM 11522]
Length = 75
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D E E++L +Y+I+ LP++ + DA A G V+++
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEVLTEYNIDRTDLPKIKRNDA-ALPDDAAVGDVIRIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRLV 73
>gi|383620456|ref|ZP_09946862.1| DNA-directed RNA polymerase subunit H [Halobiforma lacisalsi AJ5]
gi|448697817|ref|ZP_21698695.1| DNA-directed RNA polymerase subunit H [Halobiforma lacisalsi AJ5]
gi|445781183|gb|EMA32044.1| DNA-directed RNA polymerase subunit H [Halobiforma lacisalsi AJ5]
Length = 75
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D E E++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEDDELEEVLAEYDIDRTDLPKIKRNDP-ALPDEAEVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|282163885|ref|YP_003356270.1| DNA-directed RNA polymerase subunit H [Methanocella paludicola
SANAE]
gi|282156199|dbj|BAI61287.1| DNA-directed RNA polymerase subunit H [Methanocella paludicola
SANAE]
Length = 79
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
++ H L P H +LT++E ++LLK+YSI QLP++ D + + G + G V+K+
Sbjct: 6 DVLTHDLVPNHILLTEEETQELLKRYSITRGQLPKIKSSDVVVKQIGAKPGDVLKIIRRS 65
Query: 224 EITESHVTYRCV 235
V YR V
Sbjct: 66 LTAGKAVAYRLV 77
>gi|288931149|ref|YP_003435209.1| RNA polymerase Rpb5 [Ferroglobus placidus DSM 10642]
gi|288893397|gb|ADC64934.1| RNA polymerase Rpb5 [Ferroglobus placidus DSM 10642]
Length = 76
Score = 50.1 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H+L PKH++L+ +E E+LLK + ++ LP++ D IA+ G + G +V++ +
Sbjct: 5 LQDHILVPKHELLSKEEAEELLKILGVRKEDLPKIRADDPIAKEIGAKPGDIVRIIRESK 64
Query: 225 ITESHVTYRCV 235
+ YR V
Sbjct: 65 TAGKSIAYRLV 75
>gi|305663644|ref|YP_003859932.1| DNA-directed RNA polymerase subunit H [Ignisphaera aggregans DSM
17230]
gi|304378213|gb|ADM28052.1| DNA-directed RNA polymerase, subunit H [Ignisphaera aggregans DSM
17230]
Length = 86
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
I +H L PKH+VL+ +E K+LK Y I+ +QLP + D +A+ G G +VK+
Sbjct: 12 KILEHELVPKHEVLSLEEGLKVLKTYGIKPEQLPWLRASDPVARSIGARPGDIVKIVRKS 71
Query: 224 EITESHVTYRCV 235
V YR V
Sbjct: 72 PTGGEIVVYRYV 83
>gi|325960118|ref|YP_004291584.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. AL-21]
gi|325331550|gb|ADZ10612.1| DNA-directed RNA polymerase subunit H [Methanobacterium sp. AL-21]
Length = 77
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I KH L P H +L+D E +K++K + +QLP++ D +A+ + G ++++T
Sbjct: 4 DILKHKLVPDHTILSDTEAKKVVKNLKVHPEQLPKIKADDPVAKAIEAKPGDILQITRKS 63
Query: 224 EITESHVTYRCV 235
VTYR V
Sbjct: 64 HTAGKFVTYRLV 75
>gi|448611017|ref|ZP_21661651.1| DNA-directed RNA polymerase subunit H [Haloferax mucosum ATCC
BAA-1512]
gi|445743449|gb|ELZ94930.1| DNA-directed RNA polymerase subunit H [Haloferax mucosum ATCC
BAA-1512]
Length = 75
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H +L D+ E +L++Y++++ LP++ +KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTLLDDEAVEDVLQEYNVKKTNLPKIKRKDP-ALPEDAEPGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|288561074|ref|YP_003424560.1| DNA-directed RNA polymerase subunit H RpoH [Methanobrevibacter
ruminantium M1]
gi|288543784|gb|ADC47668.1| DNA-directed RNA polymerase subunit H RpoH [Methanobrevibacter
ruminantium M1]
Length = 82
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I +H PKH++LT E +K+ K + QLP++ D +++ G + G V+K+T
Sbjct: 4 DILEHNAVPKHEILTKSEIKKIFSKLDYDVSQLPKIKIDDPVSKAIGAKEGDVLKITRES 63
Query: 224 EITESHVTYRCV 235
+ + +TYR V
Sbjct: 64 QTAGTFITYRLV 75
>gi|448303814|ref|ZP_21493760.1| DNA-directed RNA polymerase subunit H [Natronorubrum sulfidifaciens
JCM 14089]
gi|445592441|gb|ELY46628.1| DNA-directed RNA polymerase subunit H [Natronorubrum sulfidifaciens
JCM 14089]
Length = 75
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D E +L +Y I+ LP++ + DA A E G VVK+
Sbjct: 1 MVDVSQHELVPEHTVLEDDVLEGVLSEYDIDRTDLPKIKRTDA-ALPDDAEAGDVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ + YR V
Sbjct: 60 NSRTTDQAIIYRLV 73
>gi|148642972|ref|YP_001273485.1| DNA-directed RNA polymerase subunit H [Methanobrevibacter smithii
ATCC 35061]
gi|261350229|ref|ZP_05975646.1| RNA polymerase Rpb5 protein [Methanobrevibacter smithii DSM 2374]
gi|148551989|gb|ABQ87117.1| DNA-dependent RNA polymerase, subunit H, RpoH [Methanobrevibacter
smithii ATCC 35061]
gi|288861015|gb|EFC93313.1| RNA polymerase Rpb5 protein [Methanobrevibacter smithii DSM 2374]
Length = 77
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+ +NI +H+L PKH+++TD E E L + + LPR+ D + + + ++++T
Sbjct: 1 MTINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRIT 60
Query: 221 YSGEITESHVTYRCV 235
+ + VTYR V
Sbjct: 61 RESDTAGTFVTYRIV 75
>gi|354609470|ref|ZP_09027426.1| RNA polymerase Rpb5 [Halobacterium sp. DL1]
gi|353194290|gb|EHB59792.1| RNA polymerase Rpb5 [Halobacterium sp. DL1]
Length = 75
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL + E E++L+ Y IE +LP++ +KD A E G V+++
Sbjct: 1 MVDVSQHELVPEHAVLDEAEVEEVLEDYEIERTELPKIRRKDP-ALPDDAEVGDVIQIVR 59
Query: 222 SGEITESHVTYRCV 235
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|322511117|gb|ADX06430.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
2]
Length = 198
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIE-EKQLPRMLKKDAIAQYYGL 211
+ +F+I +L N+ +H PKH L+ EK++L KY+IE +KQLP++ + D +A+ L
Sbjct: 113 INVFKINELQYNLLEHSFVPKHVKLSFLEKKELYLKYNIENDKQLPQISRFDPVAKAILL 172
Query: 212 ERGQVVKVTYSGEITESHVTYR-CV 235
G+V K+ +I+ + YR CV
Sbjct: 173 RPGEVCKIIRYDKISLQNDYYRICV 197
>gi|403257973|ref|XP_003921562.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Saimiri boliviensis boliviensis]
Length = 87
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 122 VNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMFQITDLLVNITKHVLKPKHQVLTD 179
+ + +T + ++Q +T A +++ K +E F +LL+NIT+H L P+H V+T
Sbjct: 1 MQEENITRALFVVQQGMTPSAKQSLVDMAPKCILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 180 QEKEKLLKKYSIEEKQLPRMLKKDAIA 206
+E +LL +Y + E QLP + D +A
Sbjct: 61 EEVTELLARYKLRENQLPGIQAGDPVA 87
>gi|150401221|ref|YP_001324987.1| DNA-directed RNA polymerase subunit H [Methanococcus aeolicus
Nankai-3]
gi|166229324|sp|A6UV53.1|RPOH_META3 RecName: Full=DNA-directed RNA polymerase subunit H
gi|150013924|gb|ABR56375.1| RNA polymerase Rpb5 [Methanococcus aeolicus Nankai-3]
Length = 78
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+V++ +E +KLL KY I+ +QLP++ D + + G + G VVK++ T H T
Sbjct: 10 PKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSP-TSGHAT 68
Query: 232 Y 232
Y
Sbjct: 69 Y 69
>gi|242398378|ref|YP_002993802.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
gi|259494220|sp|C6A1F8.1|RPOH_THESM RecName: Full=DNA-directed RNA polymerase subunit H
gi|242264771|gb|ACS89453.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
Length = 82
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ I HVL P+H+VL+ +E E+LLKKY+I+ QLP++ D Q + G ++++
Sbjct: 7 LTIFDHVLVPEHRVLSKEETEELLKKYNIKPSQLPQIKTSDPAVQALDAKPGDIIEIKRK 66
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 67 SPTAGVYYYYRIV 79
>gi|297619555|ref|YP_003707660.1| RNA polymerase Rpb5 [Methanococcus voltae A3]
gi|297378532|gb|ADI36687.1| RNA polymerase Rpb5 [Methanococcus voltae A3]
Length = 78
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H + P H+++ +E LLK+Y+I+ +QLP++L D + G + G VVK+T E
Sbjct: 6 HNMVPMHEIIDKEEIPLLLKQYNIKIQQLPKLLDIDPVVIEIGAKEGDVVKITRPSETAG 65
Query: 228 SHVTYRCV 235
+ YR V
Sbjct: 66 ETIYYRLV 73
>gi|219852747|ref|YP_002467179.1| DNA-directed RNA polymerase subunit H [Methanosphaerula palustris
E1-9c]
gi|219547006|gb|ACL17456.1| RNA polymerase Rpb5 [Methanosphaerula palustris E1-9c]
Length = 83
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ H++ P HQ+++++E + LL +Y I QLPR+ D + G + G+VVK+
Sbjct: 5 INVLDHLMVPDHQIMSEEEVKALLSRYKITYDQLPRVYHDDPAVKQIGGKVGEVVKIVRI 64
Query: 223 GEITESHVTYRCV 235
+ + +YR +
Sbjct: 65 SQTAGTAESYRLI 77
>gi|448411896|ref|ZP_21576252.1| DNA-directed RNA polymerase subunit H [Halosimplex carlsbadense
2-9-1]
gi|445669830|gb|ELZ22438.1| DNA-directed RNA polymerase subunit H [Halosimplex carlsbadense
2-9-1]
Length = 78
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQ--YYGLERGQVVKV 219
+V++++H L P H VL E E +L++Y+I++ LP++ + D + +E G VV+V
Sbjct: 1 MVDVSQHELVPDHTVLDSDEIEGVLEEYNIKKTDLPKIKRTDPAMRDLEADVETGDVVQV 60
Query: 220 TYSGEITESHVTYRCV 235
T T+ V YR V
Sbjct: 61 TRDSRTTDRAVVYRLV 76
>gi|68074989|ref|XP_679411.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|56500155|emb|CAI00595.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 107
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ ++ ++ + R+ I SH++D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDANNKI 66
Query: 100 LVVFCGPGIVKVNVIRSI--ISQIVNRDTLTGLILILQNQIT 139
+V F VK ++ + +++ ++ ++ IL+ QN +T
Sbjct: 67 IVYFVDE--VKKTGVKPLRELTEKMDEKSIQRAILVTQNTLT 106
>gi|45358923|ref|NP_988480.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
S2]
gi|340624670|ref|YP_004743123.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
X1]
gi|47605973|sp|P61519.1|RPOH_METMP RecName: Full=DNA-directed RNA polymerase subunit H
gi|45047789|emb|CAF30916.1| RNA polymerase H/23 kD subunit [Methanococcus maripaludis S2]
gi|339904938|gb|AEK20380.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
X1]
Length = 78
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ I+ H + P H+++ +E LL+KYSI+ +Q P++L D + G G VVK+T
Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>gi|292654524|ref|YP_003534421.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|433436035|ref|ZP_20408169.1| DNA-directed RNA polymerase subunit H [Haloferax sp. BAB2207]
gi|448293473|ref|ZP_21483579.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|448543662|ref|ZP_21625216.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-646]
gi|448550754|ref|ZP_21629057.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-645]
gi|448558945|ref|ZP_21633266.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-644]
gi|448560709|ref|ZP_21634157.1| DNA-directed RNA polymerase subunit H [Haloferax prahovense DSM
18310]
gi|448573319|ref|ZP_21640903.1| DNA-directed RNA polymerase subunit H [Haloferax lucentense DSM
14919]
gi|448582590|ref|ZP_21646094.1| DNA-directed RNA polymerase subunit H [Haloferax gibbonsii ATCC
33959]
gi|448597573|ref|ZP_21654498.1| DNA-directed RNA polymerase subunit H [Haloferax alexandrinus JCM
10717]
gi|448605733|ref|ZP_21658359.1| DNA-directed RNA polymerase subunit H [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622532|ref|ZP_21669226.1| DNA-directed RNA polymerase subunit H [Haloferax denitrificans ATCC
35960]
gi|291372257|gb|ADE04484.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|432191860|gb|ELK48782.1| DNA-directed RNA polymerase subunit H [Haloferax sp. BAB2207]
gi|445570527|gb|ELY25087.1| DNA-directed RNA polymerase subunit H [Haloferax volcanii DS2]
gi|445706385|gb|ELZ58268.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-646]
gi|445711259|gb|ELZ63053.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-645]
gi|445711786|gb|ELZ63574.1| DNA-directed RNA polymerase subunit H [Haloferax sp. ATCC BAA-644]
gi|445719084|gb|ELZ70767.1| DNA-directed RNA polymerase subunit H [Haloferax lucentense DSM
14919]
gi|445722359|gb|ELZ74022.1| DNA-directed RNA polymerase subunit H [Haloferax prahovense DSM
18310]
gi|445732238|gb|ELZ83821.1| DNA-directed RNA polymerase subunit H [Haloferax gibbonsii ATCC
33959]
gi|445739034|gb|ELZ90543.1| DNA-directed RNA polymerase subunit H [Haloferax alexandrinus JCM
10717]
gi|445741759|gb|ELZ93258.1| DNA-directed RNA polymerase subunit H [Haloferax sulfurifontis ATCC
BAA-897]
gi|445754614|gb|EMA06019.1| DNA-directed RNA polymerase subunit H [Haloferax denitrificans ATCC
35960]
Length = 75
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H L D+ E +L++Y++E+ LP++ KD A E G V+K+
Sbjct: 1 MVDVSQHKLVPEHTKLDDEAVEDVLQEYNVEKTNLPKIKLKDP-ALPEDAEPGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDKAVVYRLV 73
>gi|395646421|ref|ZP_10434281.1| RNA polymerase Rpb5 [Methanofollis liminatans DSM 4140]
gi|395443161|gb|EJG07918.1| RNA polymerase Rpb5 [Methanofollis liminatans DSM 4140]
Length = 83
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
N+ HV+ P HQ ++++E LL +Y I QLPR+ D + G + G V+K+T +
Sbjct: 6 NVLDHVMVPDHQKMSEEEVGDLLSRYQITLDQLPRIYSDDPAVKSIGAKIGDVIKITRNS 65
Query: 224 EITESHVTYRCV 235
+ +YR V
Sbjct: 66 QTAGIAESYRHV 77
>gi|441432195|ref|YP_007354237.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga moumouvirus]
gi|371945189|gb|AEX63009.1| DNA-directed RNA polymerase subunit 5 [Moumouvirus Monve]
gi|440383275|gb|AGC01801.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga moumouvirus]
Length = 208
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 115 RSIISQIVNRDTLTGLILILQN---QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLK 171
+S IS+ +N I++ Q +I SQ +K + ++F + LL +I + +
Sbjct: 90 QSPISEFINEYNNHRKIIVAQEYNAKIESQVSK------YGAQIFLESRLLSDIISNKFQ 143
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
P+ ++L+ E ++ +Y++ E + + K D + QY+GL++G ++++ ++ +
Sbjct: 144 PEFELLSPTEMKQFKTEYNVNEYTIKKYNKSDPVVQYFGLKKGDIIRIIRPSIVSGESID 203
Query: 232 YRCV 235
YR V
Sbjct: 204 YRIV 207
>gi|76800709|ref|YP_325717.1| DNA-directed RNA polymerase subunit H [Natronomonas pharaonis DSM
2160]
gi|76556574|emb|CAI48145.1| DNA-directed RNA polymerase subunit H [Natronomonas pharaonis DSM
2160]
Length = 75
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H + P+H VL +E E +L +Y I+ LP++ ++DA A E G VVK+
Sbjct: 1 MVDVSQHNMVPEHTVLDREEVEDVLAEYDIKRTDLPKIQRRDA-ALPDDAEPGNVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|432330440|ref|YP_007248583.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanoregula
formicicum SMSP]
gi|432137149|gb|AGB02076.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanoregula
formicicum SMSP]
Length = 83
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ +HV+ P HQ++++ E +LL +Y+I +QLP++ D + G E V+++ +
Sbjct: 5 LNVLEHVMVPDHQIMSEDEVSELLTRYNITTEQLPKIYHDDPAVKTIGAEADDVIRIIRT 64
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 65 SHTAGRAEAYRLV 77
>gi|410670211|ref|YP_006922582.1| DNA-directed RNA polymerase, subunit H [Methanolobus psychrophilus
R15]
gi|409169339|gb|AFV23214.1| DNA-directed RNA polymerase, subunit H [Methanolobus psychrophilus
R15]
Length = 80
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH++++++E + +LK Y+I ++QLP++ +D + + G + G+VVK+T +
Sbjct: 11 HELIPKHEIMSEEELKLVLKHYNIGKEQLPKIKVEDPVIKEIGAQAGEVVKITRKSQTAG 70
Query: 228 SHVTYRCV 235
YR V
Sbjct: 71 EAFYYRLV 78
>gi|297723261|ref|NP_001173994.1| Os04g0487300 [Oryza sativa Japonica Group]
gi|255675576|dbj|BAH92722.1| Os04g0487300 [Oryza sativa Japonica Group]
Length = 43
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
QLPR+ D IA+YYG++RGQVVK+ + E +VTYR V
Sbjct: 2 QLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 42
>gi|332796433|ref|YP_004457933.1| RNA polymerase subunit H [Acidianus hospitalis W1]
gi|332694168|gb|AEE93635.1| archaeal RNA polymerase subunit H [Acidianus hospitalis W1]
Length = 84
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ +E K+LK + +QLP + D + + G + G ++K+T +
Sbjct: 14 HSLVPKHEVLSIEEAYKVLKALGVSPEQLPWIKASDPVVKAIGAKPGDIIKITRKSQTVG 73
Query: 228 SHVTYRCV 235
V YR V
Sbjct: 74 ETVIYRYV 81
>gi|448482814|ref|ZP_21605585.1| DNA-directed RNA polymerase subunit H [Halorubrum arcis JCM 13916]
gi|445821100|gb|EMA70896.1| DNA-directed RNA polymerase subunit H [Halorubrum arcis JCM 13916]
Length = 75
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H +L D E E++L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDDEIEEVLAEYDVKKTNLPKIKRTDP-ALPDEAEVGDVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|241696177|ref|XP_002411834.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
gi|215504757|gb|EEC14251.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
Length = 91
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 120 QIVNRDTLTGLILILQNQITSQATKAVGLFQFK--VEMFQITDLLVNITKHVLKPKHQVL 177
Q + + +T I+++Q +T A +A+G K +E F ++LL+NIT+H L P+H VL
Sbjct: 21 QRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFLESELLINITEHELVPEHVVL 80
Query: 178 TDQEKEKLLKK 188
T +EK +LL +
Sbjct: 81 TPEEKAELLAR 91
>gi|116753351|ref|YP_842469.1| DNA-directed RNA polymerase subunit H [Methanosaeta thermophila PT]
gi|121694300|sp|A0B555.1|RPOH_METTP RecName: Full=DNA-directed RNA polymerase subunit H
gi|116664802|gb|ABK13829.1| DNA-directed RNA polymerase, subunit H [Methanosaeta thermophila
PT]
Length = 78
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H L P+H +LT +E +++L +Y +E + LP++ D +A+ G + G ++K+
Sbjct: 6 VQDHELVPEHILLTPEEAQQVLMQYGVEARHLPKIHVTDPVAKEIGAKVGDIIKIKRKSP 65
Query: 225 ITESHVTYRCV 235
+ + YR V
Sbjct: 66 TAKESIFYRLV 76
>gi|84490163|ref|YP_448395.1| DNA-directed RNA polymerase subunit H [Methanosphaera stadtmanae
DSM 3091]
gi|121729277|sp|Q2NEK1.1|RPOH_METST RecName: Full=DNA-directed RNA polymerase subunit H
gi|84373482|gb|ABC57752.1| RpoH [Methanosphaera stadtmanae DSM 3091]
Length = 77
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I +H L P+H +L+++E +K+L ++ Q+P++L D + + + G ++K+T
Sbjct: 4 DILQHKLVPEHTILSEEEAQKVLDDLNVRLDQIPKILPTDPVVKAIDAKVGDILKITRKS 63
Query: 224 EITESHVTYRCV 235
E V YR V
Sbjct: 64 ETAGIFVAYRVV 75
>gi|448312203|ref|ZP_21501953.1| DNA-directed RNA polymerase subunit H [Natronolimnobius
innermongolicus JCM 12255]
gi|445602710|gb|ELY56682.1| DNA-directed RNA polymerase subunit H [Natronolimnobius
innermongolicus JCM 12255]
Length = 75
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H VL + E++L++Y I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPDHSVLDEDTLEEVLEEYDIDRTDLPKIKRNDS-ALPDEAEIGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|257051870|ref|YP_003129703.1| DNA-directed RNA polymerase subunit H [Halorhabdus utahensis DSM
12940]
gi|256690633|gb|ACV10970.1| RNA polymerase Rpb5 [Halorhabdus utahensis DSM 12940]
Length = 75
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H +L D E E++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTILDDGELEEVLGEYDIKRTDLPKIKRADP-ALPDEAEVGDVIKIAR 59
Query: 222 SGEITESHVTYRCV 235
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|330833899|ref|YP_004408627.1| DNA-directed RNA polymerase subunit H [Metallosphaera cuprina Ar-4]
gi|329566038|gb|AEB94143.1| DNA-directed RNA polymerase subunit H [Metallosphaera cuprina Ar-4]
Length = 83
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++ +H L PKH+VL +E +LK+ + +QLP M D +A+ + G +VK+T
Sbjct: 8 IDPREHTLVPKHEVLPIEEAYNVLKELGVGPEQLPWMKASDPMAKAINAKPGDIVKITRK 67
Query: 223 GEITESHVTYRCV 235
+ V YR V
Sbjct: 68 SPVVGELVIYRYV 80
>gi|312183597|gb|ADQ42368.1| DNA-directed RNA polymerase subunit H [Methanosaeta harundinacea
6Ac]
Length = 98
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L P+H +LT +E E++ + Y ++ QLP++ D + + G + G VVK+ + +
Sbjct: 29 HDLVPEHILLTPEEAEEVFRAYGVDSAQLPKIHATDPVVKEIGGKVGDVVKIKRNSPTSG 88
Query: 228 SHVTYRCV 235
V YR V
Sbjct: 89 ESVFYRLV 96
>gi|322370002|ref|ZP_08044564.1| DNA-directed RNA polymerase subunit H [Haladaptatus paucihalophilus
DX253]
gi|320550338|gb|EFW91990.1| DNA-directed RNA polymerase subunit H [Haladaptatus paucihalophilus
DX253]
Length = 75
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H + P+H ++ E +++L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHKMVPEHSIVDSDEIDEVLAEYDIKSTDLPKIKRTDP-ALPDDAEPGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ TE+ V YR V
Sbjct: 60 NSRTTENAVVYRLV 73
>gi|310831429|ref|YP_003970072.1| putative DNA-directed RNA polymerase subunit Rpb5 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386613|gb|ADO67473.1| putative DNA-directed RNA polymerase subunit Rpb5 [Cafeteria
roenbergensis virus BV-PW1]
Length = 190
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
FK E+F + L +I P+H +L+++EKE++L Y +EK + ++ D +A+Y G
Sbjct: 107 FKGELFLTLEFLSDIPSLPFVPEHILLSEKEKEEILSVY--KEKNIAKIFVTDMMARYLG 164
Query: 211 LERGQVVKVTYSGEITESHVTYRCVW 236
++G ++K+ T + YR V+
Sbjct: 165 AKKGDLIKIIRKTLNTGESIYYRRVF 190
>gi|413949944|gb|AFW82593.1| hypothetical protein ZEAMMB73_065125 [Zea mays]
Length = 142
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 35/47 (74%), Gaps = 6/47 (12%)
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+ +VEMF +NI +HVL P+H VLT++EK+ LL++Y+++E Q+
Sbjct: 34 EMEVEMF------INIKEHVLVPEHHVLTNEEKKTLLEQYTLKETQV 74
>gi|408381649|ref|ZP_11179197.1| DNA-directed RNA polymerase subunit H [Methanobacterium formicicum
DSM 3637]
gi|407815580|gb|EKF86150.1| DNA-directed RNA polymerase subunit H [Methanobacterium formicicum
DSM 3637]
Length = 78
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I KH L P H VL+ + +K+LKK I +QLP++ D + + + G ++K+T
Sbjct: 5 DILKHELVPDHVVLSKSDVKKVLKKLDIHPEQLPKIKADDPVVKAIEAKPGDILKITRKS 64
Query: 224 EITESHVTYRCV 235
+ TYR V
Sbjct: 65 QTAGKFETYRLV 76
>gi|386001090|ref|YP_005919389.1| DNA-directed RNA polymerase subunit H [Methanosaeta harundinacea
6Ac]
gi|357209146|gb|AET63766.1| DNA-directed RNA polymerase subunit H [Methanosaeta harundinacea
6Ac]
Length = 78
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H L P+H +LT +E E++ + Y ++ QLP++ D + + G + G VVK+ +
Sbjct: 6 LQDHDLVPEHILLTPEEAEEVFRAYGVDSAQLPKIHATDPVVKEIGGKVGDVVKIKRNSP 65
Query: 225 ITESHVTYRCV 235
+ V YR V
Sbjct: 66 TSGESVFYRLV 76
>gi|297527626|ref|YP_003669650.1| RNA polymerase Rpb5 [Staphylothermus hellenicus DSM 12710]
gi|297256542|gb|ADI32751.1| RNA polymerase Rpb5 [Staphylothermus hellenicus DSM 12710]
Length = 90
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +H L PKH+VL+ +E +LL+K I+ QLP + D + + G + G ++++
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWISIDDPVVKAIGAKPGDIIRIIRKS 66
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 67 STAGETIAYRYV 78
>gi|294495207|ref|YP_003541700.1| DNA-directed RNA polymerase, subunit H [Methanohalophilus mahii DSM
5219]
gi|292666206|gb|ADE36055.1| DNA-directed RNA polymerase, subunit H [Methanohalophilus mahii DSM
5219]
Length = 78
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H P+H+++ + E + +LKKY+I +QLP++ +D + + G E G +VK+T +
Sbjct: 9 HEFIPRHEIIDEDEIKSVLKKYNIGREQLPKIKIEDPVIKEIGAEVGDIVKITRKSQTAG 68
Query: 228 SHVTYRCV 235
+ YR V
Sbjct: 69 EALYYRYV 76
>gi|451927615|gb|AGF85493.1| polymerase subunit 5 [Moumouvirus goulette]
Length = 208
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 115 RSIISQIVNRDTLTGLILILQN---QITSQATKAVGLFQFKVEMFQITDLLVNITKHVLK 171
+S IS+ +N I+I Q +I SQ +K + ++F + LL ++ + +
Sbjct: 90 QSPISEFLNEYNNHKKIIIAQEYNAKIESQVSK------YGAQIFLESRLLSDLISNKFQ 143
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
P+ ++L+ E +++ +Y++ E + + + D + QY+GL++G +V++ ++ ++
Sbjct: 144 PEFELLSPTEMKQVKIEYNVNEYTIKKYNRSDPVVQYFGLKKGDIVRIIRPSIVSGENID 203
Query: 232 YRCV 235
YR V
Sbjct: 204 YRIV 207
>gi|424812802|ref|ZP_18238042.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757024|gb|EGQ40607.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalinarum
sp. J07AB56]
Length = 75
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 167 KHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEIT 226
+H P+H+V+TD+E E+LL+K+ I++ QLP + DA + G V+++T
Sbjct: 5 EHEAVPQHEVMTDEETEELLQKFGIDKSQLPNIKDNDAALKSLEAVPGDVIEITRDSPTA 64
Query: 227 ESHVTYRCV 235
YR V
Sbjct: 65 GEAKYYRVV 73
>gi|407464205|ref|YP_006775087.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus sp. AR2]
gi|407047393|gb|AFS82145.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus sp. AR2]
Length = 83
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
V + HV PKH++++ QE E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHVYVPKHEIISKQEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|397771996|ref|YP_006539542.1| RNA polymerase Rpb5 [Natrinema sp. J7-2]
gi|448336442|ref|ZP_21525541.1| DNA-directed RNA polymerase subunit H [Natrinema pallidum DSM 3751]
gi|448342571|ref|ZP_21531519.1| DNA-directed RNA polymerase subunit H [Natrinema gari JCM 14663]
gi|448347125|ref|ZP_21536004.1| DNA-directed RNA polymerase subunit H [Natrinema altunense JCM
12890]
gi|397681089|gb|AFO55466.1| RNA polymerase Rpb5 [Natrinema sp. J7-2]
gi|445625326|gb|ELY78688.1| DNA-directed RNA polymerase subunit H [Natrinema gari JCM 14663]
gi|445629182|gb|ELY82476.1| DNA-directed RNA polymerase subunit H [Natrinema pallidum DSM 3751]
gi|445631462|gb|ELY84694.1| DNA-directed RNA polymerase subunit H [Natrinema altunense JCM
12890]
Length = 75
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL ++ E +L++Y+I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEEALEDVLEEYNIDRTDLPKIKRNDP-ALPDEAEIGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ + YR V
Sbjct: 60 DSRTTDQSIVYRLV 73
>gi|323305973|gb|EGA59708.1| Rpb5p [Saccharomyces cerevisiae FostersB]
Length = 114
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRD 125
P++ + V FC V V +++ + I ++
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKN 104
>gi|18977937|ref|NP_579294.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus DSM
3638]
gi|397652058|ref|YP_006492639.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus COM1]
gi|22096124|sp|Q8U0M2.1|RPOH_PYRFU RecName: Full=DNA-directed RNA polymerase subunit H
gi|18893707|gb|AAL81689.1| DNA-directed RNA polymerase subunit h [Pyrococcus furiosus DSM
3638]
gi|393189649|gb|AFN04347.1| DNA-directed RNA polymerase subunit H [Pyrococcus furiosus COM1]
Length = 82
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
+I HVL P+H+VL+++EK+ LL+KY I QLP++ D + G + G V+++
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEI 63
>gi|323310097|gb|EGA63291.1| Rpb5p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQI 121
P++ + V FC V V +++ + I
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHI 100
>gi|21228376|ref|NP_634298.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Go1]
gi|452210799|ref|YP_007490913.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Tuc01]
gi|20906846|gb|AAM31970.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Go1]
gi|452100701|gb|AGF97641.1| DNA-directed RNA polymerase subunit H [Methanosarcina mazei Tuc01]
Length = 107
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 151 FKVEMFQITDLL-VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
F+ +F DL ++ H PKH+++++ E + +L KY IE++QLP++ +D + +
Sbjct: 20 FECFIFGGKDLTKFSLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEI 79
Query: 210 GLERGQVVKVTYSGEITESHVTYRCV 235
G G VVK+T + YR V
Sbjct: 80 GAVVGDVVKITRKSQTAGEADYYRLV 105
>gi|410722156|ref|ZP_11361468.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanobacterium
sp. Maddingley MBC34]
gi|410597475|gb|EKQ52088.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Methanobacterium
sp. Maddingley MBC34]
Length = 78
Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I KH L P H VL+ + +K+LKK I +QLP++ D + + + G ++K+T
Sbjct: 5 DILKHELVPDHVVLSKSDVKKVLKKLDIHPEQLPKIKADDPVVKAIEAKPGDILKITRKS 64
Query: 224 EITESHVTYRCV 235
TYR V
Sbjct: 65 HTAGKFETYRLV 76
>gi|124485984|ref|YP_001030600.1| DNA-directed RNA polymerase subunit H [Methanocorpusculum labreanum
Z]
gi|166229325|sp|A2SSM7.1|RPOH_METLZ RecName: Full=DNA-directed RNA polymerase subunit H
gi|124363525|gb|ABN07333.1| DNA-directed RNA polymerase, subunit H [Methanocorpusculum
labreanum Z]
Length = 82
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ H + P HQ++TD++ + LL + I E LP++ D + G + G V+ +
Sbjct: 4 LNVLLHEMVPDHQIMTDEDVKNLLTTFDITEDHLPKIYHDDPAVKACGAKPGNVIMIVRK 63
Query: 223 GEITESHVTYRCV 235
+ +YR V
Sbjct: 64 SQTAGEATSYRLV 76
>gi|452208511|ref|YP_007488633.1| DNA-directed RNA polymerase subunit H [Natronomonas moolapensis
8.8.11]
gi|452084611|emb|CCQ37958.1| DNA-directed RNA polymerase subunit H [Natronomonas moolapensis
8.8.11]
Length = 75
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H P+H VL E+LL +Y I LP++ ++DA A E G V+K+
Sbjct: 1 MVDVSQHNQVPEHTVLDRDSVEELLAEYDIRRTDLPKIQRRDA-ALPEDAEVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ + YR V
Sbjct: 60 DSRTTDEAIVYRLV 73
>gi|448396744|ref|ZP_21569192.1| DNA-directed RNA polymerase subunit H [Haloterrigena limicola JCM
13563]
gi|445673273|gb|ELZ25834.1| DNA-directed RNA polymerase subunit H [Haloterrigena limicola JCM
13563]
Length = 75
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL + E++L +Y+I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDTLEEVLSEYNIDRTDLPKIKRNDP-ALPDEAEVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|83315223|ref|XP_730700.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 91
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ ++ ++ + R+ I SH++D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDANNKI 66
Query: 100 LVVF 103
+V F
Sbjct: 67 IVYF 70
>gi|435845616|ref|YP_007307866.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronococcus
occultus SP4]
gi|433671884|gb|AGB36076.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronococcus
occultus SP4]
Length = 75
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL + E++L +Y I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLSEYDIDRTDLPKIKRNDS-ALPDEAEVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|329765756|ref|ZP_08257325.1| RNA polymerase Rpb5 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|393794930|ref|ZP_10378294.1| RNA polymerase Rpb5 [Candidatus Nitrosoarchaeum limnia BG20]
gi|329137822|gb|EGG42089.1| RNA polymerase Rpb5 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 83
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
V + H+ PKH++++ QE E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHIYVPKHEIISKQEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|407461848|ref|YP_006773165.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045470|gb|AFS80223.1| RNA polymerase Rpb5 [Candidatus Nitrosopumilus koreensis AR1]
Length = 83
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H+ PKH++++ QE E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 10 VPDHIYVPKHEIISKQEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRKSP 69
Query: 225 ITESHVTYRCV 235
+ YR V
Sbjct: 70 TAGESLYYRYV 80
>gi|313211717|emb|CBY40659.1| unnamed protein product [Oikopleura dioica]
Length = 42
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 195 QLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
QLPR+ K D +A+Y+G++RGQV K+ E +VTYR
Sbjct: 1 QLPRIQKSDPVARYFGVQRGQVFKIIRRSETAGRYVTYR 39
>gi|149595717|ref|XP_001520959.1| PREDICTED: hypothetical protein LOC100092316, partial
[Ornithorhynchus anatinus]
Length = 157
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 44 LSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKR 98
LSR ++ DRGY V E++ ++++F+ +G P R R + ++H DP+ +
Sbjct: 44 LSRNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQ 103
Query: 99 ILVVFCG 105
+ V F G
Sbjct: 104 MFVFFPG 110
>gi|448297906|ref|ZP_21487940.1| DNA-directed RNA polymerase subunit H [Natronorubrum tibetense
GA33]
gi|445592632|gb|ELY46818.1| DNA-directed RNA polymerase subunit H [Natronorubrum tibetense
GA33]
Length = 75
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL + E++L +Y+I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLTEYNIDRTDLPKIKRNDS-ALPDEAEIGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|340344215|ref|ZP_08667347.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519356|gb|EGP93079.1| DNA-directed RNA polymerase subunit H [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 83
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
V + H+ PKH++++ QE E +LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHIYVPKHEIISKQEAEDVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|15228284|ref|NP_188290.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332642330|gb|AEE75851.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 87
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKK 188
F +E+FQ +L+VN+ +HV P+HQ LT +EK+K L++
Sbjct: 41 FHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLER 78
>gi|238488993|ref|XP_002375734.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
gi|220698122|gb|EED54462.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
Length = 79
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 25 ESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDP 80
E SG VD R+ R + + RTV EML+DRGY V E+ +S+++F+ Y DP
Sbjct: 3 EDYSSGSVD-ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYS-DP 56
>gi|433637471|ref|YP_007283231.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Halovivax ruber
XH-70]
gi|448375018|ref|ZP_21558735.1| DNA-directed RNA polymerase subunit H [Halovivax asiaticus JCM
14624]
gi|433289275|gb|AGB15098.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Halovivax ruber
XH-70]
gi|445659479|gb|ELZ12285.1| DNA-directed RNA polymerase subunit H [Halovivax asiaticus JCM
14624]
Length = 75
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL E +L +Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHSVLDKAAIEDVLDEYDIDRTDLPKIKRTDP-ALPDDAEVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ + YR V
Sbjct: 60 DSRTTDQAIVYRMV 73
>gi|227828172|ref|YP_002829952.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
M.14.25]
gi|227830879|ref|YP_002832659.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
L.S.2.15]
gi|229579765|ref|YP_002838164.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
Y.G.57.14]
gi|229581566|ref|YP_002839965.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
Y.N.15.51]
gi|229585401|ref|YP_002843903.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
M.16.27]
gi|238620362|ref|YP_002915188.1| DNA-directed RNA polymerase subunit H [Sulfolobus islandicus
M.16.4]
gi|284998386|ref|YP_003420154.1| RNA polymerase subunit, RPB5 [Sulfolobus islandicus L.D.8.5]
gi|385773842|ref|YP_005646409.1| RNA polymerase Rpb5 [Sulfolobus islandicus HVE10/4]
gi|385776477|ref|YP_005649045.1| RNA polymerase Rpb5 [Sulfolobus islandicus REY15A]
gi|259494213|sp|C3MZM6.1|RPOH_SULIA RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494214|sp|C4KIV6.1|RPOH_SULIK RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494215|sp|C3MRK1.1|RPOH_SULIL RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494216|sp|C3MY97.1|RPOH_SULIM RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494217|sp|C3NFS5.1|RPOH_SULIN RecName: Full=DNA-directed RNA polymerase subunit H
gi|259494218|sp|C3N7P8.1|RPOH_SULIY RecName: Full=DNA-directed RNA polymerase subunit H
gi|237823482|pdb|2WAQ|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823497|pdb|2WB1|H Chain H, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823515|pdb|2WB1|Z Chain Z, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462795|pdb|2Y0S|H Chain H, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462813|pdb|2Y0S|Z Chain Z, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260749|pdb|4AYB|H Chain H, Rnap At 3.2ang
gi|400260766|pdb|4B1O|H Chain H, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260788|pdb|4B1P|Z Chain Z, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814443|gb|ACL36495.1| RNA polymerase subunit 5 [Sulfolobus shibatae B12]
gi|227457327|gb|ACP36014.1| RNA polymerase Rpb5 [Sulfolobus islandicus L.S.2.15]
gi|227459968|gb|ACP38654.1| RNA polymerase Rpb5 [Sulfolobus islandicus M.14.25]
gi|228010480|gb|ACP46242.1| RNA polymerase Rpb5 [Sulfolobus islandicus Y.G.57.14]
gi|228012282|gb|ACP48043.1| RNA polymerase Rpb5 [Sulfolobus islandicus Y.N.15.51]
gi|228020451|gb|ACP55858.1| RNA polymerase Rpb5 [Sulfolobus islandicus M.16.27]
gi|238381432|gb|ACR42520.1| RNA polymerase Rpb5 [Sulfolobus islandicus M.16.4]
gi|284446282|gb|ADB87784.1| RNA polymerase subunit, RPB5 [Sulfolobus islandicus L.D.8.5]
gi|323475225|gb|ADX85831.1| RNA polymerase Rpb5 [Sulfolobus islandicus REY15A]
gi|323477957|gb|ADX83195.1| RNA polymerase Rpb5 [Sulfolobus islandicus HVE10/4]
Length = 84
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>gi|302348972|ref|YP_003816610.1| DNA-directed RNA polymerase subunit H [Acidilobus saccharovorans
345-15]
gi|302329384|gb|ADL19579.1| DNA-directed RNA polymerase subunit H [Acidilobus saccharovorans
345-15]
Length = 68
Score = 44.7 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH++L+ +E ++L K ++ QLPR+ D I + G + G +V++ + HV
Sbjct: 2 PKHRILSIEEAVEVLNKLGVKPWQLPRISANDPIIKLLGGKPGDIVEIERNSPTAGKHVV 61
Query: 232 YRCV 235
YR V
Sbjct: 62 YRVV 65
>gi|289581814|ref|YP_003480280.1| RNA polymerase Rpb5 [Natrialba magadii ATCC 43099]
gi|448282781|ref|ZP_21474063.1| DNA-directed RNA polymerase subunit H [Natrialba magadii ATCC
43099]
gi|448354754|ref|ZP_21543509.1| DNA-directed RNA polymerase subunit H [Natrialba hulunbeirensis JCM
10989]
gi|448356453|ref|ZP_21545186.1| DNA-directed RNA polymerase subunit H [Natrialba chahannaoensis JCM
10990]
gi|289531367|gb|ADD05718.1| RNA polymerase Rpb5 [Natrialba magadii ATCC 43099]
gi|445575396|gb|ELY29871.1| DNA-directed RNA polymerase subunit H [Natrialba magadii ATCC
43099]
gi|445637085|gb|ELY90241.1| DNA-directed RNA polymerase subunit H [Natrialba hulunbeirensis JCM
10989]
gi|445653486|gb|ELZ06357.1| DNA-directed RNA polymerase subunit H [Natrialba chahannaoensis JCM
10990]
Length = 75
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD-AIAQYYGLERGQVVKVT 220
+V++++H L P H VL + E++L +Y I+ LP++ + D A+ + G V+K+
Sbjct: 1 MVDVSQHELVPDHSVLEEDALEEVLDEYDIDRTDLPKIKRNDPALPDDAAV--GDVIKIV 58
Query: 221 YSGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 59 RNSRTTDQAVVYRLV 73
>gi|150399421|ref|YP_001323188.1| DNA-directed RNA polymerase subunit H [Methanococcus vannielii SB]
gi|1173164|sp|P41559.1|RPOH_METVS RecName: Full=DNA-directed RNA polymerase subunit H
gi|581387|emb|CAA51725.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|809732|emb|CAA41862.1| subunit H of DNA-dependent RNA polymerase [Methanococcus vannielii]
gi|150012124|gb|ABR54576.1| RNA polymerase Rpb5 [Methanococcus vannielii SB]
Length = 78
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + P+H+++ E LL+KY I+ +Q P++L D + G + G +VK+T
Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60
Query: 223 GEITESHVTYRCV 235
+ V +R V
Sbjct: 61 SQTAGETVYFRLV 73
>gi|448627106|ref|ZP_21671781.1| DNA-directed RNA polymerase subunit H [Haloarcula vallismortis ATCC
29715]
gi|445759734|gb|EMA11010.1| DNA-directed RNA polymerase subunit H [Haloarcula vallismortis ATCC
29715]
Length = 75
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H V+ + + E +L +Y I++ LP++ + D A E G VV++
Sbjct: 1 MVDVSQHDLVPDHSVVDEDDLEAVLTEYDIKKTDLPKIKRTDK-ALPDDAEVGDVVRIER 59
Query: 222 SGEITESHVTYRCV 235
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|335438705|ref|ZP_08561441.1| DNA-directed RNA polymerase subunit H [Halorhabdus tiamatea SARL4B]
gi|334890827|gb|EGM29087.1| DNA-directed RNA polymerase subunit H [Halorhabdus tiamatea SARL4B]
Length = 75
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL D++ E +L +Y I+ LP++ + D A E G V+++
Sbjct: 1 MVDVSQHELVPEHTVLDDEKLEDVLGEYDIKRTDLPKIKRADP-ALPDEAEVGDVIEIAR 59
Query: 222 SGEITESHVTYRCV 235
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|110669271|ref|YP_659082.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi DSM
16790]
gi|385804835|ref|YP_005841235.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi C23]
gi|109627018|emb|CAJ53494.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi DSM
16790]
gi|339730327|emb|CCC41656.1| DNA-directed RNA polymerase subunit H [Haloquadratum walsbyi C23]
Length = 75
Score = 44.7 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++ +H L P+H ++ + + E +L +Y I LP++ ++D A E G VVK+
Sbjct: 1 MVDVNQHTLVPEHTLVDEDDIEAILTEYDIRRADLPKIQRRDP-ALPDNAEPGDVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V+YR V
Sbjct: 60 DSRTTDRAVSYRLV 73
>gi|357289742|gb|AET73055.1| hypothetical protein PGAG_00166 [Phaeocystis globosa virus 12T]
gi|357292542|gb|AET73878.1| hypothetical protein PGBG_00170 [Phaeocystis globosa virus 14T]
Length = 211
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 15/184 (8%)
Query: 43 YLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVV 102
Y SR+ +LE+L +RGY ++ + N ++ + G + D+L + I S K+I V
Sbjct: 14 YNSRKHLLEILGERGYDISTYD-NFTINEV----GLMLEYDQLDMLIKKTS-TQKKIYVK 67
Query: 103 FCGPGIVKVNVIRSIISQIVN-RDTLT---GLILILQ---NQITSQATKAVGLFQFK-VE 154
+ ++K I +I + + + LT LI+I + N Q K + + +
Sbjct: 68 YYVGKVLKTQNIYDMIQDLFHLENVLTKKDDLIIITKDEPNDTLRQNVKDIWNDEGNYIS 127
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI-EEKQLPRMLKKDAIAQYYGLER 213
+ I L N+ KH L+PK L D EK + KY+I ++KQ+P + ++ G
Sbjct: 128 LINIKRLQYNVLKHELQPKFTKLNDTEKAEFKVKYNILDDKQIPDISYFSPVSLVLGFRP 187
Query: 214 GQVV 217
G V+
Sbjct: 188 GDVI 191
>gi|448320531|ref|ZP_21510017.1| DNA-directed RNA polymerase subunit H [Natronococcus amylolyticus
DSM 10524]
gi|445605433|gb|ELY59355.1| DNA-directed RNA polymerase subunit H [Natronococcus amylolyticus
DSM 10524]
Length = 75
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL + E++L +Y I+ LP++ + D+ A + G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLTEYDIDRTDLPKIKRNDS-ALPDEADVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|91773161|ref|YP_565853.1| DNA-directed RNA polymerase subunit H [Methanococcoides burtonii
DSM 6242]
gi|121689251|sp|Q12WS3.1|RPOH_METBU RecName: Full=DNA-directed RNA polymerase subunit H
gi|91712176|gb|ABE52103.1| DNA-directed RNA polymerase subunit H [Methanococcoides burtonii
DSM 6242]
Length = 78
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
++ H L P H+++ + + + +L Y++E +QLP++ D IA G E G VVKV
Sbjct: 5 SLLDHELIPHHEIMDEDDLKTVLTHYNVEREQLPKLKVTDPIALEIGAEPGDVVKVIRKS 64
Query: 224 EITESHVTYRCV 235
+ + YR V
Sbjct: 65 QTAGEALYYRYV 76
>gi|448316020|ref|ZP_21505658.1| DNA-directed RNA polymerase subunit H [Natronococcus jeotgali DSM
18795]
gi|445610366|gb|ELY64140.1| DNA-directed RNA polymerase subunit H [Natronococcus jeotgali DSM
18795]
Length = 75
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD-AIAQYYGLERGQVVKVT 220
+V++++H L P+H VL + E++L +Y I+ LP++ + D A+ + G VVK+
Sbjct: 1 MVDVSQHELVPEHTVLEEDVLEEVLSEYDIDRTDLPKIKRNDSALPDEAAV--GDVVKIV 58
Query: 221 YSGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 59 RNSRTTDQAVVYRLV 73
>gi|156937445|ref|YP_001435241.1| DNA-directed RNA polymerase subunit H [Ignicoccus hospitalis
KIN4/I]
gi|156566429|gb|ABU81834.1| DNA-directed RNA polymerase, subunit H [Ignicoccus hospitalis
KIN4/I]
Length = 73
Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
HVL P+H L+ +E + L+K+ + +QLP + D +A+ L+ G +VK+ E E
Sbjct: 3 HVLVPQHVKLSPEEAVEELRKWGLRVEQLPLLKASDPVARELDLKPGDIVKIIRKSENAE 62
Query: 228 SHVTYRCV 235
V +R V
Sbjct: 63 EVVVFRYV 70
>gi|15791391|ref|NP_281215.1| DNA-directed RNA polymerase subunit H [Halobacterium sp. NRC-1]
gi|169237152|ref|YP_001690352.1| DNA-directed RNA polymerase subunit H [Halobacterium salinarum R1]
gi|229564214|sp|B0R8D7.1|RPOH_HALS3 RecName: Full=DNA-directed RNA polymerase subunit H
gi|338819309|sp|P0CX06.1|RPOH_HALSA RecName: Full=DNA-directed RNA polymerase subunit H
gi|43539|emb|CAA40423.1| ORF 75 [Halobacterium salinarum]
gi|10582046|gb|AAG20695.1| DNA-directed RNA polymerase subunit H [Halobacterium sp. NRC-1]
gi|167728218|emb|CAP15006.1| DNA-directed RNA polymerase subunit H [Halobacterium salinarum R1]
Length = 75
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL ++ + +L Y I+ +LP++ KD A E G VV++
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|15897174|ref|NP_341779.1| DNA-directed RNA polymerase subunit H [Sulfolobus solfataricus P2]
gi|284174419|ref|ZP_06388388.1| DNA-directed RNA polymerase subunit H [Sulfolobus solfataricus
98/2]
gi|384433686|ref|YP_005643044.1| RNA polymerase Rpb5 [Sulfolobus solfataricus 98/2]
gi|20140181|sp|Q980Q9.1|RPOH_SULSO RecName: Full=DNA-directed RNA polymerase subunit H
gi|167744887|pdb|2PMZ|H Chain H, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744898|pdb|2PMZ|V Chain V, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782150|pdb|3HKZ|H Chain H, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782163|pdb|3HKZ|T Chain T, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813363|gb|AAK40569.1| DNA-directed RNA polymerase, subunit H (rpoH) [Sulfolobus
solfataricus P2]
gi|261601840|gb|ACX91443.1| RNA polymerase Rpb5 [Sulfolobus solfataricus 98/2]
Length = 84
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>gi|448683944|ref|ZP_21692564.1| DNA-directed RNA polymerase subunit H [Haloarcula japonica DSM
6131]
gi|189332908|dbj|BAG41980.1| RNA polymerase subunit H [Haloarcula japonica]
gi|445783517|gb|EMA34346.1| DNA-directed RNA polymerase subunit H [Haloarcula japonica DSM
6131]
Length = 75
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H V+ + + E +L +Y I++ LP++ + D A E G VV++
Sbjct: 1 MVDVSQHDLVPDHSVVDEDDLEAVLTEYEIKKTDLPKIKRTDK-ALPDDAEVGDVVRIER 59
Query: 222 SGEITESHVTYRCV 235
T++ V YR V
Sbjct: 60 DSRTTDTAVVYRLV 73
>gi|322510703|gb|ADX06017.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
1]
Length = 199
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 92 QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV--GLF 149
+ +P+ ++ + K N+ + I S + N L+++ ++ TS + +
Sbjct: 52 KDEPTVYLIYCYSSSNFNKTNLEKEI-SSVKNLRKQDTLLILTKDYSTSTIHDLLRSKYY 110
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSI-EEKQLPRMLKKDAIAQY 208
+ V +++I L NI +H PKH L EK +L K+++I ++ Q+P++ + D +A
Sbjct: 111 DYYVNIYKIQQLQYNILEHSYVPKHIKLNPTEKIELYKRFNIKDDSQMPQISRFDPVACA 170
Query: 209 YGLERGQVVKVTYSGEITESHVTYR-CV 235
L G V K+ +I+ + YR C+
Sbjct: 171 IFLRPGDVCKIIRYDKISFENEFYRVCI 198
>gi|73671123|ref|YP_307138.1| DNA-directed RNA polymerase subunit H [Methanosarcina barkeri str.
Fusaro]
gi|121731929|sp|Q464Y4.1|RPOH_METBF RecName: Full=DNA-directed RNA polymerase subunit H
gi|72398285|gb|AAZ72558.1| DNA-directed RNA polymerase, subunit H [Methanosarcina barkeri str.
Fusaro]
Length = 78
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+++ + E + +L KYSIE++QLP++ D + + G G VVK+T +
Sbjct: 13 PKHEIMPEGELKSVLSKYSIEKEQLPKIKVHDPVCKEIGAVVGDVVKITRISQTAGEAEY 72
Query: 232 YRCV 235
YR V
Sbjct: 73 YRLV 76
>gi|23822082|sp|Q8PUQ8.1|RPOH_METMA RecName: Full=DNA-directed RNA polymerase subunit H
Length = 78
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H PKH+++++ E + +L KY IE++QLP++ +D + + G G VVK+T +
Sbjct: 9 HEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKSQTAG 68
Query: 228 SHVTYRCV 235
YR V
Sbjct: 69 EADYYRLV 76
>gi|55379098|ref|YP_136948.1| DNA-directed RNA polymerase subunit H [Haloarcula marismortui ATCC
43049]
gi|344213110|ref|YP_004797430.1| DNA-directed RNA polymerase subunit H [Haloarcula hispanica ATCC
33960]
gi|448638076|ref|ZP_21676127.1| DNA-directed RNA polymerase subunit H [Haloarcula sinaiiensis ATCC
33800]
gi|448655086|ref|ZP_21681938.1| DNA-directed RNA polymerase subunit H [Haloarcula californiae ATCC
33799]
gi|448664664|ref|ZP_21684302.1| DNA-directed RNA polymerase subunit H [Haloarcula amylolytica JCM
13557]
gi|448680457|ref|ZP_21690774.1| DNA-directed RNA polymerase subunit H [Haloarcula argentinensis DSM
12282]
gi|55231823|gb|AAV47242.1| DNA-directed RNA polymerase subunit H [Haloarcula marismortui ATCC
43049]
gi|343784465|gb|AEM58442.1| DNA-directed RNA polymerase subunit H [Haloarcula hispanica ATCC
33960]
gi|445763962|gb|EMA15136.1| DNA-directed RNA polymerase subunit H [Haloarcula sinaiiensis ATCC
33800]
gi|445765535|gb|EMA16673.1| DNA-directed RNA polymerase subunit H [Haloarcula californiae ATCC
33799]
gi|445768901|gb|EMA19978.1| DNA-directed RNA polymerase subunit H [Haloarcula argentinensis DSM
12282]
gi|445774251|gb|EMA25272.1| DNA-directed RNA polymerase subunit H [Haloarcula amylolytica JCM
13557]
Length = 75
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H V+ + + E +L +Y I++ LP++ + D A E G VV++
Sbjct: 1 MVDVSQHDLVPDHSVVDEDDLEAVLTEYEIKKTDLPKIKRTDK-ALPDDAEVGDVVRIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>gi|340386044|ref|XP_003391518.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 88
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 39 SLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPD-----VDRLRISISHQS 93
+ R + R+TV++M DR Y V E++ ++ F+ +G+ P+ + L I ++H
Sbjct: 7 TYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHND 66
Query: 94 DPSKRILVVFCGPGIVKVNVIR 115
DP+ ++ V F V + I+
Sbjct: 67 DPTDQMFVFFPEDPKVGIKTIK 88
>gi|310752281|gb|ADP09443.1| DNA-directed RNA polymerase subunit H [uncultured marine
crenarchaeote E6-3G]
Length = 179
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+E+ T +I KH L ++L+++E+E++++ Y E Q P + D ++ G
Sbjct: 96 IELIPRTLPTFDIFKHKLVSPAEILSEEERERVIEFYHAEPHQFPWIKASDPVSIILGAR 155
Query: 213 RGQVVKVTYSGEITESHVTYRCV 235
G ++K + E + V+YR V
Sbjct: 156 PGDILKTSGHSETAGTSVSYRYV 178
>gi|150402529|ref|YP_001329823.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
C7]
gi|166229327|sp|A6VGU6.1|RPOH_METM7 RecName: Full=DNA-directed RNA polymerase subunit H
gi|150033559|gb|ABR65672.1| RNA polymerase Rpb5 [Methanococcus maripaludis C7]
Length = 78
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + P H+++ +E LL+KY+I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHAMVPTHEIIPREEIPLLLEKYNIKLQQLPKLLDTDPLVLEVEAAPGDVLKITRM 60
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>gi|448444632|ref|ZP_21589922.1| DNA-directed RNA polymerase subunit H [Halorubrum saccharovorum DSM
1137]
gi|448457210|ref|ZP_21595705.1| DNA-directed RNA polymerase subunit H [Halorubrum lipolyticum DSM
21995]
gi|448466837|ref|ZP_21599259.1| DNA-directed RNA polymerase subunit H [Halorubrum kocurii JCM
14978]
gi|445686045|gb|ELZ38386.1| DNA-directed RNA polymerase subunit H [Halorubrum saccharovorum DSM
1137]
gi|445810791|gb|EMA60806.1| DNA-directed RNA polymerase subunit H [Halorubrum lipolyticum DSM
21995]
gi|445813263|gb|EMA63243.1| DNA-directed RNA polymerase subunit H [Halorubrum kocurii JCM
14978]
Length = 75
Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H +L +E +++L +Y ++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLEPEEVDEVLAEYDVKRTNLPKIKRTDP-ALPDEAEVGDVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ TE V YR V
Sbjct: 60 NSRTTEEAVVYRLV 73
>gi|386874557|ref|ZP_10116798.1| RNA polymerase Rpb5, C-terminal domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386807632|gb|EIJ67010.1| RNA polymerase Rpb5, C-terminal domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 83
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
V + H+ P H++++ QE E +LKKY+ + +LP + D G++ G ++K+T
Sbjct: 8 VLVPDHIYVPTHEIISKQEAEDVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRK 67
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 68 SPTAGESLYYRYV 80
>gi|351737382|gb|AEQ60417.1| RNA polymerase subunit 5 [Acanthamoeba castellanii mamavirus]
gi|398257084|gb|EJN40692.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga lentillevirus]
Length = 205
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 44/82 (53%)
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
++F+ + L ++ + +P+ Q+L+ E E + +Y+ L +M++ D I +Y+ L++
Sbjct: 123 QIFKEHEFLADLLSNEFQPRFQLLSPTEMESVKTEYNANPYTLKKMVRSDPIVRYFALKK 182
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
++++ + + YR V
Sbjct: 183 NDIIRIIRPSATSGQGIDYRVV 204
>gi|424814013|ref|ZP_18239191.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalina sp.
J07AB43]
gi|339757629|gb|EGQ42886.1| DNA-directed RNA polymerase, subunit H [Candidatus Nanosalina sp.
J07AB43]
Length = 77
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+ +++ H L P+H+ ++++E E+LL ++ IE + LP++ D+ + E G V ++T
Sbjct: 1 MAMDVRDHRLVPEHRKMSEEEVEELLDRHGIERENLPKIKSNDSALKQKDFEPGDVFEIT 60
Query: 221 YSGEITESHVTYRCV 235
S YR V
Sbjct: 61 RSSPTAGKTKYYRMV 75
>gi|448494506|ref|ZP_21609493.1| DNA-directed RNA polymerase subunit H [Halorubrum californiensis
DSM 19288]
gi|445689341|gb|ELZ41581.1| DNA-directed RNA polymerase subunit H [Halorubrum californiensis
DSM 19288]
Length = 76
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++++H L P H +L D E+ E +L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVEDVLAEYDVKKTNLPKIKRTDP-AIPDEAEVGDVVKIV 59
Query: 221 YSGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 RDSRTTDEAVVYRLV 74
>gi|222478547|ref|YP_002564784.1| DNA-directed RNA polymerase subunit H [Halorubrum lacusprofundi
ATCC 49239]
gi|222451449|gb|ACM55714.1| RNA polymerase Rpb5 [Halorubrum lacusprofundi ATCC 49239]
Length = 75
Score = 43.1 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H +L +E +++L +Y ++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLEAEEVDEVLAEYDVKRTNLPKIKRTDP-ALPDEAEVGDVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ TE V YR V
Sbjct: 60 NSRTTEEAVVYRLV 73
>gi|124028418|ref|YP_001013738.1| DNA-directed RNA polymerase subunit H [Hyperthermus butylicus DSM
5456]
gi|189043962|sp|A2BN32.1|RPOH_HYPBU RecName: Full=DNA-directed RNA polymerase subunit H
gi|123979112|gb|ABM81393.1| DNA-directed RNA polymerase subunit H [Hyperthermus butylicus DSM
5456]
Length = 83
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI +H L PKH+V+ +E +++++ + +QLP + D +A+ G + G +V++
Sbjct: 9 NILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRI 64
>gi|284163645|ref|YP_003401924.1| RNA polymerase Rpb5 [Haloterrigena turkmenica DSM 5511]
gi|284013300|gb|ADB59251.1| RNA polymerase Rpb5 [Haloterrigena turkmenica DSM 5511]
Length = 75
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL + E++L +Y+I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLDEDALEEVLDEYAIDRTDLPKIKRSDP-ALPDDAEIGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ + V YR V
Sbjct: 60 NSRTADQAVVYRLV 73
>gi|7208597|gb|AAF40216.1|AF236666_1 RNA polymerase subunit [Emericella nidulans]
Length = 117
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYG 77
D+ R+++R + + RTV EML+DRGY V E+ + + +F+ Y
Sbjct: 19 ADDAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYA 64
>gi|161527854|ref|YP_001581680.1| RNA polymerase Rpb5 [Nitrosopumilus maritimus SCM1]
gi|238686927|sp|A9A458.1|RPOH_NITMS RecName: Full=DNA-directed RNA polymerase subunit H
gi|160339155|gb|ABX12242.1| RNA polymerase Rpb5 [Nitrosopumilus maritimus SCM1]
Length = 83
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H+ PKH++++ E E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 10 VPDHIYVPKHEIISKTEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRKSP 69
Query: 225 ITESHVTYRCV 235
+ YR V
Sbjct: 70 TAGEGLYYRYV 80
>gi|448388150|ref|ZP_21565090.1| DNA-directed RNA polymerase subunit H [Haloterrigena salina JCM
13891]
gi|445670801|gb|ELZ23398.1| DNA-directed RNA polymerase subunit H [Haloterrigena salina JCM
13891]
Length = 75
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H +L + +++L++Y I+ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTILDEDALDEVLEEYDIDRTDLPKIKRSDP-ALPDEAEIGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ + V YR V
Sbjct: 60 NSRTADQAVVYRLV 73
>gi|126465701|ref|YP_001040810.1| DNA-directed RNA polymerase subunit H [Staphylothermus marinus F1]
gi|189043963|sp|A3DMP2.1|RPOH_STAMF RecName: Full=DNA-directed RNA polymerase subunit H
gi|126014524|gb|ABN69902.1| DNA-directed RNA polymerase, subunit H [Staphylothermus marinus F1]
Length = 91
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +H L PKH+VL+ +E +LL+K I+ QLP + D + + + G ++++
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWISIDDPVVKAIKAKPGDIIRIIRKS 66
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 67 PTAGEAIAYRYV 78
>gi|20090130|ref|NP_616205.1| DNA-directed RNA polymerase subunit H [Methanosarcina acetivorans
C2A]
gi|22096112|sp|Q8TRB4.1|RPOH_METAC RecName: Full=DNA-directed RNA polymerase subunit H
gi|19915110|gb|AAM04685.1| DNA-directed RNA polymerase, subunit H [Methanosarcina acetivorans
C2A]
Length = 78
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+++++ E + +L KY IE++QLP++ +D +++ G G VV++T +
Sbjct: 13 PKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKSQTAGEADY 72
Query: 232 YRCV 235
YR V
Sbjct: 73 YRLV 76
>gi|257386584|ref|YP_003176357.1| RNA polymerase Rpb5 [Halomicrobium mukohataei DSM 12286]
gi|257168891|gb|ACV46650.1| RNA polymerase Rpb5 [Halomicrobium mukohataei DSM 12286]
Length = 75
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P H ++ + + +L++Y+I++ LP++ + D A E G V+K+
Sbjct: 1 MVDVSQHELVPDHSIVDEDVLDDVLEEYNIKKTDLPKIKRTDP-ATPDEAEVGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 NSRTTDQAVVYRLV 73
>gi|296243133|ref|YP_003650620.1| DNA-directed RNA polymerase subunit H [Thermosphaera aggregans DSM
11486]
gi|296095717|gb|ADG91668.1| DNA-directed RNA polymerase, subunit H [Thermosphaera aggregans DSM
11486]
Length = 87
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++I +H L PKH+VL +E ++LK + QLP + D + + G + G +V++
Sbjct: 5 IDILEHELVPKHEVLDPKEAAEVLKNLGLHPWQLPWISIDDPVVKAIGAKPGDIVRIYRK 64
Query: 223 GEITESHVTYRCV 235
+ + YR V
Sbjct: 65 SPTAGTSIAYRYV 77
>gi|336476450|ref|YP_004615591.1| RNA polymerase Rpb5 [Methanosalsum zhilinae DSM 4017]
gi|335929831|gb|AEH60372.1| RNA polymerase Rpb5 [Methanosalsum zhilinae DSM 4017]
Length = 78
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+++ + E + +LK+Y IE++QLP++ D + + G VVK+T
Sbjct: 13 PKHEIMAEDEIKSVLKEYDIEKEQLPKIKANDPVVKEIDASVGDVVKITRISPTAGKAYY 72
Query: 232 YRCV 235
YR V
Sbjct: 73 YRLV 76
>gi|413923120|gb|AFW63052.1| hypothetical protein ZEAMMB73_163602 [Zea mays]
Length = 222
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 6/50 (12%)
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+ +VEMF +NI +HVL +H VLT++EK+ LL++Y+++E Q+
Sbjct: 107 AILASEVEMF------INIKEHVLVSEHHVLTNEEKKTLLERYTLKETQV 150
>gi|70936236|ref|XP_739092.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515823|emb|CAH87208.1| hypothetical protein PC302370.00.0 [Plasmodium chabaudi chabaudi]
Length = 69
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDV-DRLRISISHQSDPSKRI 99
R+Y R+T EML+DRGY + E + F+ ++ ++ + R+ I SH++D S +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDASNKI 66
Query: 100 LV 101
+V
Sbjct: 67 IV 68
>gi|357290920|gb|AET73520.1| hypothetical protein EMVG_00234 [Emiliania huxleyi virus PS401]
Length = 191
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 153 VEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
V++F+++ L ++T H L P+H V+T E + + K LP + DAI+++ L
Sbjct: 107 VQVFELSSLTHDVTTHSLVPRHTVMTQTE----IAMLTTSPKALPLLPTTDAISRFLDLR 162
Query: 213 RGQVVKV 219
+VVK+
Sbjct: 163 VDEVVKI 169
>gi|413952169|gb|AFW84818.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 134
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRI 99
R Y RRTV++ML+DRGY V E+ S +DF +G+ + L I+ ++DPS ++
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQV 72
>gi|401022|sp|P31815.1|RPOH_THECE RecName: Full=DNA-directed RNA polymerase subunit H
gi|809777|emb|CAA41801.1| DNA-dependent RNA polymerase (subunit H) [Thermococcus celer]
gi|809778|emb|CAA47721.1| Subunit H of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 82
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I H L P+H++L+++E ++LL++Y I+ QLP++ D G + G V+++
Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 68 RTAGYYYYYRLV 79
>gi|311977611|ref|YP_003986731.1| DNA-directed RNA polymerase subunit 5 [Acanthamoeba polyphaga
mimivirus]
gi|82000012|sp|Q5UPX7.1|RPO5_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 5
gi|55416858|gb|AAV50508.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga mimivirus]
gi|308204273|gb|ADO18074.1| DNA-directed RNA polymerase subunit 5 [Acanthamoeba polyphaga
mimivirus]
gi|339061167|gb|AEJ34471.1| RNA polymerase subunit 5 [Acanthamoeba polyphaga mimivirus]
Length = 205
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 44/82 (53%)
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
++F+ + L ++ + +P+ Q+L+ E E + +Y+ L ++++ D I +Y+ L++
Sbjct: 123 QIFKEHEFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKK 182
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
++++ + + YR V
Sbjct: 183 NDIIRIIRPSATSGQGIDYRVV 204
>gi|159905696|ref|YP_001549358.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
C6]
gi|238686972|sp|A9A9V3.1|RPOH_METM6 RecName: Full=DNA-directed RNA polymerase subunit H
gi|159887189|gb|ABX02126.1| RNA polymerase Rpb5 [Methanococcus maripaludis C6]
Length = 78
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + P H+++ +E LL+KY+I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHEMVPTHEIIPREEIPLLLEKYNIKLQQLPKLLDTDPLVLETEATPGDVLKITRM 60
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>gi|448427500|ref|ZP_21583815.1| DNA-directed RNA polymerase subunit H [Halorubrum terrestre JCM
10247]
gi|448451262|ref|ZP_21592745.1| DNA-directed RNA polymerase subunit H [Halorubrum litoreum JCM
13561]
gi|448513828|ref|ZP_21616759.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
9100]
gi|448526662|ref|ZP_21619931.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
10118]
gi|445678187|gb|ELZ30681.1| DNA-directed RNA polymerase subunit H [Halorubrum terrestre JCM
10247]
gi|445692981|gb|ELZ45144.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
9100]
gi|445698889|gb|ELZ50927.1| DNA-directed RNA polymerase subunit H [Halorubrum distributum JCM
10118]
gi|445810696|gb|EMA60712.1| DNA-directed RNA polymerase subunit H [Halorubrum litoreum JCM
13561]
Length = 76
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTD-QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++++H L P H +L D +E E++L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVEEVLAEYDVKKTNLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 221 YSGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 RDSRTTDEAVVYRLV 74
>gi|355570726|ref|ZP_09041996.1| RNA polymerase Rpb5 [Methanolinea tarda NOBI-1]
gi|354826008|gb|EHF10224.1| RNA polymerase Rpb5 [Methanolinea tarda NOBI-1]
Length = 83
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 40/73 (54%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ +H++ P H++++++E + L Y I +QLP++ D + G + G V+++ +
Sbjct: 5 LNVLEHIMVPDHKIMSEEEIQHLYSLYHITSEQLPKIYHDDPAVKAIGAKVGDVIRIIRT 64
Query: 223 GEITESHVTYRCV 235
++R V
Sbjct: 65 SHTAGRAESFRLV 77
>gi|347522773|ref|YP_004780343.1| RNA polymerase Rpb5 [Pyrolobus fumarii 1A]
gi|343459655|gb|AEM38091.1| RNA polymerase Rpb5 [Pyrolobus fumarii 1A]
Length = 105
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
N+ +H P H+VL+ +E ++L++ +E QLP + D + + G + G ++++
Sbjct: 28 NVLEHEYVPPHRVLSPEEAARVLRELGVEPWQLPWISYNDPVVKAIGAKPGDIIEIRRKS 87
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 88 PTAGEIIVYRLV 99
>gi|448497565|ref|ZP_21610518.1| DNA-directed RNA polymerase subunit H [Halorubrum coriense DSM
10284]
gi|445699796|gb|ELZ51816.1| DNA-directed RNA polymerase subunit H [Halorubrum coriense DSM
10284]
Length = 76
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTD-QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++++H L P H +L D +E E +L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVEAVLAEYDVKKTNLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 221 YSGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 RDSRTTDEAVVYRLV 74
>gi|448734903|ref|ZP_21717123.1| DNA-directed RNA polymerase subunit H [Halococcus salifodinae DSM
8989]
gi|445799533|gb|EMA49912.1| DNA-directed RNA polymerase subunit H [Halococcus salifodinae DSM
8989]
Length = 75
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++ +H L P+H ++ D E +++L +Y I LP++ + D A G V+++
Sbjct: 1 MVDVGQHTLVPEHTIVEDDEIDEVLDEYDIRRTDLPKIKRTDP-ALPDDAAAGDVIRIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|448434389|ref|ZP_21586199.1| DNA-directed RNA polymerase subunit H [Halorubrum tebenquichense
DSM 14210]
gi|448532893|ref|ZP_21621313.1| DNA-directed RNA polymerase subunit H [Halorubrum hochstenium ATCC
700873]
gi|445685305|gb|ELZ37660.1| DNA-directed RNA polymerase subunit H [Halorubrum tebenquichense
DSM 14210]
gi|445706127|gb|ELZ58012.1| DNA-directed RNA polymerase subunit H [Halorubrum hochstenium ATCC
700873]
Length = 76
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTDQEK-EKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++++H L P H +L D E E++L +Y +++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEDVEEVLAEYDVKKTDLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 221 YSGEITESHVTYRCV 235
+ T+ V YR V
Sbjct: 60 RNSRTTDEAVVYRLV 74
>gi|126178248|ref|YP_001046213.1| DNA-directed RNA polymerase subunit H [Methanoculleus marisnigri
JR1]
gi|126178261|ref|YP_001046226.1| DNA-directed RNA polymerase subunit H [Methanoculleus marisnigri
JR1]
gi|125861042|gb|ABN56231.1| DNA-directed RNA polymerase, subunit H [Methanoculleus marisnigri
JR1]
gi|125861055|gb|ABN56244.1| DNA-directed RNA polymerase, subunit H [Methanoculleus marisnigri
JR1]
Length = 83
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+++ H + P HQ++ ++E LL Y I +QLP++ D + G E G V+++
Sbjct: 5 LDVLNHEMVPDHQIMGEEEVADLLATYHITLEQLPKIYHDDPAVKAIGGEVGNVIRIVRD 64
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 65 SRTAGRAEAYRLV 77
>gi|149034609|gb|EDL89346.1| rCG29511, isoform CRA_b [Rattus norvegicus]
Length = 167
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 51 EMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----ISISHQSDPSKRILVVFCG 105
++ DRGY V E++ ++++F+A +G P R R + ++H DP+ ++ V F G
Sbjct: 11 QLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPG 70
Query: 106 PG 107
G
Sbjct: 71 EG 72
>gi|134045263|ref|YP_001096749.1| DNA-directed RNA polymerase subunit H [Methanococcus maripaludis
C5]
gi|166229326|sp|A4FWF9.1|RPOH_METM5 RecName: Full=DNA-directed RNA polymerase subunit H
gi|132662888|gb|ABO34534.1| DNA-directed RNA polymerase, subunit H [Methanococcus maripaludis
C5]
Length = 78
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + P H+++ +E LL+KY I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHEMVPTHEIIPREEIPLLLEKYDIKLQQLPKLLDTDPLVLEVEATPGDVLKITRM 60
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 61 SPTAGETTYYRLV 73
>gi|222445209|ref|ZP_03607724.1| hypothetical protein METSMIALI_00832 [Methanobrevibacter smithii
DSM 2375]
gi|222434774|gb|EEE41939.1| RNA polymerase Rpb5 domain protein [Methanobrevibacter smithii DSM
2375]
Length = 69
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 169 VLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITES 228
+L PKH+++TD E E L + + LPR+ D + + + ++++T + +
Sbjct: 1 MLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRITRESDTAGT 60
Query: 229 HVTYRCV 235
VTYR V
Sbjct: 61 FVTYRIV 67
>gi|119719205|ref|YP_919700.1| DNA-directed RNA polymerase subunit H [Thermofilum pendens Hrk 5]
gi|189043964|sp|A1RWW7.1|RPOH_THEPD RecName: Full=DNA-directed RNA polymerase subunit H
gi|119524325|gb|ABL77697.1| DNA-directed RNA polymerase, subunit H [Thermofilum pendens Hrk 5]
Length = 80
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
++ +H L PKH +L+ +E +LLK +++ +LP + D +A+ + G V+ +
Sbjct: 6 DVLEHELVPKHVLLSKEEANRLLKAMGLKKSELPWIYSTDPVARALKAKPGDVIMIIRQS 65
Query: 224 EITESHVTYRCV 235
V +R V
Sbjct: 66 PTAGESVAFRLV 77
>gi|118576749|ref|YP_876492.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Cenarchaeum
symbiosum A]
gi|118195270|gb|ABK78188.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Cenarchaeum
symbiosum A]
Length = 83
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ HV P H+++T E E++L+K++ + +LP +L +D G++ G ++++T
Sbjct: 10 VPDHVYVPLHEIITKAEAEEVLEKFNCKPTELPLILVEDPAIIGLGVKPGDMIRITRKSS 69
Query: 225 ITESHVTYRCV 235
+ YR V
Sbjct: 70 TAGESIYYRYV 80
>gi|429217658|ref|YP_007175648.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Caldisphaera
lagunensis DSM 15908]
gi|429134187|gb|AFZ71199.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Caldisphaera
lagunensis DSM 15908]
Length = 84
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
I H L PKH++L +E ++LK I+ QLPR+ D + + G + G ++++
Sbjct: 10 KILGHYLVPKHRILPLEESVEVLKSLGIKPWQLPRISINDPVVKILGGKPGDIIEIERDS 69
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 70 PTAGKYKAYRVV 81
>gi|14325447|dbj|BAB60351.1| DNA-directed RNA polymerase H [Thermoplasma volcanium GSS1]
Length = 104
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI-----AQYYGLERGQVVK 218
N+ H L P+H +++++E++ +LK+ IE++ LPR+ D + A + ++ G V+K
Sbjct: 22 NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 81
Query: 219 VTYSGEITESHVTYRCV 235
+ + V YR V
Sbjct: 82 IIRNSPTMGHSVYYRVV 98
>gi|448725407|ref|ZP_21707865.1| DNA-directed RNA polymerase subunit H [Halococcus morrhuae DSM
1307]
gi|445798524|gb|EMA48927.1| DNA-directed RNA polymerase subunit H [Halococcus morrhuae DSM
1307]
Length = 75
Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V +++H L P+H+++ D E + LL +Y I LP++ + D A G VV++
Sbjct: 1 MVEVSQHTLVPEHRLIDDDEIDALLAEYDISRTDLPKIKRTDP-ALPDEAATGDVVRIER 59
Query: 222 SGEITESHVTYRCV 235
T+ V +R V
Sbjct: 60 DSRTTDRAVVHRLV 73
>gi|330507362|ref|YP_004383790.1| DNA-directed RNA polymerase subunit H [Methanosaeta concilii GP6]
gi|328928170|gb|AEB67972.1| DNA-directed RNA polymerase subunit H [Methanosaeta concilii GP6]
Length = 78
Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H + P+H +LT +E +LK++ I QLP++ D A+ G + G ++K+
Sbjct: 6 VKDHEMVPEHILLTPEEGLDVLKEFGIGAPQLPKIHISDPAAKEIGAKVGDIIKIIRKST 65
Query: 225 ITESHVTYRCV 235
+ YR V
Sbjct: 66 TAKHSTFYRLV 76
>gi|307353878|ref|YP_003894929.1| RNA polymerase Rpb5 [Methanoplanus petrolearius DSM 11571]
gi|307157111|gb|ADN36491.1| RNA polymerase Rpb5 [Methanoplanus petrolearius DSM 11571]
Length = 83
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H++ P HQ+++ +E E+LL Y I QLP++ D + G + V+++ + +
Sbjct: 10 HMMVPDHQIMSVEEVEELLNSYKITRDQLPKIYHDDPAVKEIGAKINDVIRIVRNSQTAG 69
Query: 228 SHVTYRCV 235
YR V
Sbjct: 70 RAEAYRQV 77
>gi|13542014|ref|NP_111702.1| DNA-directed RNA polymerase subunit H [Thermoplasma volcanium GSS1]
gi|20140160|sp|Q979F2.2|RPOH_THEVO RecName: Full=DNA-directed RNA polymerase subunit H
Length = 87
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI-----AQYYGLERGQVVK 218
N+ H L P+H +++++E++ +LK+ IE++ LPR+ D + A + ++ G V+K
Sbjct: 5 NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 64
Query: 219 VTYSGEITESHVTYRCV 235
+ + V YR V
Sbjct: 65 IIRNSPTMGHSVYYRVV 81
>gi|340500684|gb|EGR27545.1| DNA-directed polymerase II polypeptide E, putative
[Ichthyophthirius multifiliis]
Length = 188
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 190 SIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235
+I + QLP++L D I +Y+GL QV K+ E ++TYR V
Sbjct: 142 NITDSQLPKILPTDPINKYFGLRIKQVFKIERDSETAGKYITYRIV 187
>gi|403166115|ref|XP_003326024.2| hypothetical protein PGTG_07854 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166076|gb|EFP81605.2| hypothetical protein PGTG_07854 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1190
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 21 GEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRG------YAVALSEINLS-VQDFR 73
+P E + GF+D G RD+LRYYL R LE LK + A L+EI L+ + +
Sbjct: 526 SKPFEEVVLGFIDRGERDALRYYLISR--LERLKRQDLTQRMMLATWLTEIYLAKINELE 583
Query: 74 AIYGQDP 80
+ G DP
Sbjct: 584 DLVGADP 590
>gi|352682854|ref|YP_004893378.1| DNA-directed RNA polymerase subunit H [Thermoproteus tenax Kra 1]
gi|350275653|emb|CCC82300.1| DNA-directed RNA polymerase, subunit H [Thermoproteus tenax Kra 1]
Length = 99
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 154 EMFQITDLLVNITKHVLKPKHQV-LTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLE 212
+ F T + + +H L P+ V LT +E LL+K + Q+P + D + + G +
Sbjct: 14 KWFLHTPVSKRVLEHSLGPQEVVVLTKEEARALLRKLRVRPWQIPWIRSSDPLVKAVGAK 73
Query: 213 RGQVVKVTYSGEITESHVTYRCV 235
G V+K+ E V YR V
Sbjct: 74 PGDVIKIVRRSETAGESVIYRLV 96
>gi|448737569|ref|ZP_21719609.1| DNA-directed RNA polymerase subunit H [Halococcus thailandensis JCM
13552]
gi|445803713|gb|EMA53996.1| DNA-directed RNA polymerase subunit H [Halococcus thailandensis JCM
13552]
Length = 75
Score = 40.4 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V +++H L P+H+++ D E + LL +Y I LP++ + D A G VV++
Sbjct: 1 MVEVSQHTLVPEHRLVDDDEIDALLAEYDISRTDLPKIKRTDP-ALPDEAATGDVVRIER 59
Query: 222 SGEITESHVTYRCV 235
T+ V +R V
Sbjct: 60 DSRTTDRAVVHRLV 73
>gi|154151475|ref|YP_001405093.1| DNA-directed RNA polymerase subunit H [Methanoregula boonei 6A8]
gi|154000027|gb|ABS56450.1| RNA polymerase subunit, RPB5 [Methanoregula boonei 6A8]
Length = 83
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ HV+ P HQ+++++E LL +Y I +QLP++ D + + V+++
Sbjct: 5 LNVLSHVMVPDHQLMSEEEVSALLSRYHITTEQLPKIYHDDPAVKAIDAKVDDVIRIIRK 64
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 65 SHTAGRAEAYRLV 77
>gi|448417593|ref|ZP_21579449.1| DNA-directed RNA polymerase subunit H [Halosarcina pallida JCM
14848]
gi|445677547|gb|ELZ30047.1| DNA-directed RNA polymerase subunit H [Halosarcina pallida JCM
14848]
Length = 75
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL ++E E++L++Y ++ LP++ + D A G+E G VVK+
Sbjct: 1 MVDVSQHKLVPEHTVLEEEEVEEVLEEYDVKRTSLPKIKRTDPAAP-DGVEVGDVVKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ +TYR V
Sbjct: 60 DSRTTDKAITYRLV 73
>gi|167042211|gb|ABZ06943.1| putative RNA polymerase Rpb5, C-terminal domain protein [uncultured
marine crenarchaeote HF4000_ANIW93I24]
Length = 83
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H+ PKH+++T +E E +L+KY + LP + D G++ G ++KVT
Sbjct: 13 HIDVPKHEIMTRKEAEGVLEKYHCKATDLPLIFVTDPAIVGIGVKPGDMIKVTRKSATAG 72
Query: 228 SHVTYRCV 235
YR V
Sbjct: 73 ESFYYRYV 80
>gi|268323370|emb|CBH36958.1| DNA-directed RNA polymerase subunit H [uncultured archaeon]
Length = 80
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
I H L P+H V+ + E ++LL KY I+ QLP++ D G + G VV++T
Sbjct: 8 IHGHELVPEHVVMDESEVKELLDKYKIKRVQLPKIKVTDPAINGLGAKVGDVVEITRQSR 67
Query: 225 ITESHVTYRCV 235
+++R V
Sbjct: 68 TAGKALSFRLV 78
>gi|448476276|ref|ZP_21603440.1| DNA-directed RNA polymerase subunit H [Halorubrum aidingense JCM
13560]
gi|445815825|gb|EMA65744.1| DNA-directed RNA polymerase subunit H [Halorubrum aidingense JCM
13560]
Length = 76
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTD-QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++++H L P H +L D +E + +L +Y ++ LP++ + D A E G VVK+
Sbjct: 1 MVDVSQHELVPDHVLLDDPEEVDAVLAEYDVKRTNLPKIKRTDP-ALPDEAEVGDVVKIV 59
Query: 221 YSGEITESHVTYRCV 235
+ T+ + YR V
Sbjct: 60 RNSRTTDEAIVYRLV 74
>gi|327311707|ref|YP_004338604.1| DNA-directed RNA polymerase subunit H [Thermoproteus uzoniensis
768-20]
gi|326948186|gb|AEA13292.1| DNA-directed RNA polymerase subunit H [Thermoproteus uzoniensis
768-20]
Length = 79
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 164 NITKHVLKP-KHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
I +HVL P + +LT +E LL++ + Q+P + D + + G + G V+++
Sbjct: 4 KILEHVLGPVEVSILTKEEARALLRRLHVRPWQIPWIRSSDPLVKAVGAKPGDVLRIVRR 63
Query: 223 GEITESHVTYRCV 235
E V YR V
Sbjct: 64 SETAGESVIYRLV 76
>gi|168058522|ref|XP_001781257.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667322|gb|EDQ53955.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 822
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
MF +L+ N T +VL PKH + + E +++ K+ I LP++ +D I ++YG +R
Sbjct: 475 MFIEEELMFNPTSNVLVPKHCIASSSELQEM-KEKEISHDSLPKIYAEDRIYKWYGFKR 532
>gi|167043845|gb|ABZ08534.1| putative RNA polymerase Rpb5, C-terminal domain protein [uncultured
marine crenarchaeote HF4000_APKG3E18]
Length = 83
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 157 QITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQV 216
++T L N H+ PKH+++T +E E++L+KY + LP + D G++ G +
Sbjct: 5 KLTTLAPN---HIDVPKHEIMTVKEAEEVLEKYHCKATDLPLIFVTDPAIIGIGVKPGDM 61
Query: 217 VKVTYSGEITESHVTYRCV 235
+K+T YR V
Sbjct: 62 IKITRKSATAGESFYYRYV 80
>gi|325969564|ref|YP_004245756.1| RNA polymerase Rpb5 [Vulcanisaeta moutnovskia 768-28]
gi|323708767|gb|ADY02254.1| RNA polymerase Rpb5 [Vulcanisaeta moutnovskia 768-28]
Length = 90
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
I +H PK +++ +E +++LK+ + + QLP + D +A+ G + G V+++
Sbjct: 16 RILEHEYMPKAEIVPKEEVKEILKQLNAKVFQLPWIRASDPLARAIGAKPGNVIRIIRKS 75
Query: 224 EITESHVTYRCV 235
+ VTYR V
Sbjct: 76 DTAGEFVTYRFV 87
>gi|307595329|ref|YP_003901646.1| RNA polymerase Rpb5 [Vulcanisaeta distributa DSM 14429]
gi|307550530|gb|ADN50595.1| RNA polymerase Rpb5 [Vulcanisaeta distributa DSM 14429]
Length = 90
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
I +H PK +++ +E +++L++ + + QLP + D +A+ G + G V+++
Sbjct: 16 RILEHEYMPKAEIVPKEEVKEILRQLNAKVFQLPWIRASDPLARAIGAKPGNVIRIIRKS 75
Query: 224 EITESHVTYRCV 235
+ VTYR V
Sbjct: 76 DTAGEFVTYRFV 87
>gi|167044135|gb|ABZ08818.1| putative RNA polymerase Rpb5, C-terminal domain protein [uncultured
marine crenarchaeote HF4000_APKG5C13]
Length = 91
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H+ PKH+++T +E + +L+KY + LP + D G++ G ++K+T
Sbjct: 21 HIDVPKHEIMTRKEADGVLEKYHCKATDLPLIFVSDPAIIAIGVKPGDMIKITRKSATAG 80
Query: 228 SHVTYRCV 235
YR V
Sbjct: 81 ESFYYRYV 88
>gi|221064717|ref|ZP_03540822.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
gi|220709740|gb|EED65108.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
Length = 646
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 57 GYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
GY V L+ N + Q R++ G++ +DR + + DP++RI+V+ G
Sbjct: 322 GYGVWLARANFNRQSLRSLLGREGGIDRPHVYLMQPYDPNRRIIVMLHG 370
>gi|319764696|ref|YP_004128633.1| hypothetical protein Alide_4042 [Alicycliphilus denitrificans BC]
gi|317119257|gb|ADV01746.1| hypothetical protein Alide_4042 [Alicycliphilus denitrificans BC]
Length = 646
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 57 GYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
GY V L+ N + Q R++ G++ +DR + + DP++RI+V+ G
Sbjct: 322 GYGVWLARANFNRQSLRSLLGREGGIDRPHVYLMQPYDPNRRIIVMLHG 370
>gi|548828|sp|Q03588.1|RPOH_THEAC RecName: Full=DNA-directed RNA polymerase subunit H
gi|48090|emb|CAA48279.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
Length = 87
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD----AIAQYYG-LERGQVVK 218
N+ H L P+H ++ ++E++ +LK+ +IE++ LP++ D A+ +G ++ G ++K
Sbjct: 5 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 64
Query: 219 VTYSGEITESHVTYRCV 235
+ V YR V
Sbjct: 65 IVRKSPTMGHSVYYRVV 81
>gi|16081518|ref|NP_393869.1| DNA-directed RNA polymerase subunit H [Thermoplasma acidophilum DSM
1728]
gi|10639561|emb|CAC11533.1| DNA-DIRECTED RNA POLYMERASE CHAIN H related protein [Thermoplasma
acidophilum]
Length = 91
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD----AIAQYYG-LERGQVVK 218
N+ H L P+H ++ ++E++ +LK+ +IE++ LP++ D A+ +G ++ G ++K
Sbjct: 9 NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 68
Query: 219 VTYSGEITESHVTYRCV 235
+ V YR V
Sbjct: 69 IVRKSPTMGHSVYYRVV 85
>gi|429191193|ref|YP_007176871.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronobacterium
gregoryi SP2]
gi|448326616|ref|ZP_21515965.1| DNA-directed RNA polymerase subunit H [Natronobacterium gregoryi
SP2]
gi|429135411|gb|AFZ72422.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Natronobacterium
gregoryi SP2]
gi|445610908|gb|ELY64673.1| DNA-directed RNA polymerase subunit H [Natronobacterium gregoryi
SP2]
Length = 75
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H +L ++ E++L +Y I+ LP++ + D+ A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTILEEETLEEVLAEYDIDRTDLPKIKRNDS-ALPDEAEAGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQAVVYRLV 73
>gi|363540324|ref|YP_004894383.1| mg332 gene product [Megavirus chiliensis]
gi|448825283|ref|YP_007418214.1| DNA-directed RNA polymerase subunit 5 [Megavirus lba]
gi|350611489|gb|AEQ32933.1| DNA-directed RNA polymerase subunit 5 [Megavirus chiliensis]
gi|371943610|gb|AEX61438.1| DNA-directed RNA polymerase subunit 5 [Megavirus courdo7]
gi|425701206|gb|AFX92368.1| DNA-directed RNA polymerase subunit 5 [Megavirus courdo11]
gi|444236468|gb|AGD92238.1| DNA-directed RNA polymerase subunit 5 [Megavirus lba]
Length = 206
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/82 (18%), Positives = 41/82 (50%)
Query: 154 EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLER 213
++F+ + L ++ H +PK ++L+ +E E +Y+ ++ + D + +Y+ L+
Sbjct: 123 QIFRESAFLSDLISHSFQPKFELLSPKEMELFKNEYNATTYTTKKITRSDPVTKYFALKV 182
Query: 214 GQVVKVTYSGEITESHVTYRCV 235
++++ + + YR V
Sbjct: 183 NDIIRIVRPSITSGESIDYRIV 204
>gi|88601368|ref|YP_501546.1| DNA-directed RNA polymerase subunit H [Methanospirillum hungatei
JF-1]
gi|88186830|gb|ABD39827.1| DNA-directed RNA polymerase, subunit H [Methanospirillum hungatei
JF-1]
Length = 83
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ KH + P+H ++++++ + L +Y I +QLP++ D G V+K+
Sbjct: 5 LNVLKHEMVPEHSIMSEEDVKNLYARYQIGPEQLPKIYHDDPAVLSIGARISDVIKIVRK 64
Query: 223 GEITESHVTYRCV 235
+YR V
Sbjct: 65 SMTAGRAESYRLV 77
>gi|356506930|ref|XP_003522226.1| PREDICTED: uncharacterized protein LOC100806474 [Glycine max]
Length = 330
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQL 196
+ +LL N+TKH + K++VLTD EK LL + EEKQ+
Sbjct: 259 VDELLFNVTKHGKQQKYEVLTDDEKRALLTELKREEKQI 297
>gi|409722463|ref|ZP_11269913.1| DNA-directed RNA polymerase subunit H [Halococcus hamelinensis
100A6]
gi|448722473|ref|ZP_21705008.1| DNA-directed RNA polymerase subunit H [Halococcus hamelinensis
100A6]
gi|445789473|gb|EMA40158.1| DNA-directed RNA polymerase subunit H [Halococcus hamelinensis
100A6]
Length = 76
Score = 37.0 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTD-QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++ +H L P+H V+ D E +++L +Y I+ LP++ + D A G V+++
Sbjct: 1 MVDVGQHTLVPEHTVVEDDSEIDEVLAEYDIKRTDLPKIKRTDP-ALPDEAATGDVIRIV 59
Query: 221 YSGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 RDSRTTDQAVVYRLV 74
>gi|448330658|ref|ZP_21519937.1| DNA-directed RNA polymerase subunit H [Natrinema versiforme JCM
10478]
gi|445611162|gb|ELY64922.1| DNA-directed RNA polymerase subunit H [Natrinema versiforme JCM
10478]
Length = 75
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL ++ E++L++Y I+ LP++ + DA A E G V+K+
Sbjct: 1 MVDVSQHELVPEHTVLEEEALEEVLEEYDIDRTDLPKIKRTDA-ALPDDAELGDVIKIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDQSVVYRYV 73
>gi|448731187|ref|ZP_21713490.1| DNA-directed RNA polymerase subunit H [Halococcus saccharolyticus
DSM 5350]
gi|445792781|gb|EMA43382.1| DNA-directed RNA polymerase subunit H [Halococcus saccharolyticus
DSM 5350]
Length = 76
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 162 LVNITKHVLKPKHQVLTD-QEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT 220
+V++ +H L P+H ++ D E +++L +Y I LP++ + D A G V+++
Sbjct: 1 MVDVGQHTLVPEHTIVEDDSEIDEVLDEYDIRRTDLPKIKRTDP-ALPDDAAAGDVIRIV 59
Query: 221 YSGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 RDSRTTDQAVVYRLV 74
>gi|240103984|ref|YP_002960293.1| DNA-directed RNA polymerase subunit H [Thermococcus gammatolerans
EJ3]
gi|259494219|sp|C5A210.1|RPOH_THEGJ RecName: Full=DNA-directed RNA polymerase subunit H
gi|239911538|gb|ACS34429.1| DNA-directed RNA polymerase subunit H (rpoH) [Thermococcus
gammatolerans EJ3]
Length = 82
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
++ H L P+H+V++++EKE+LL++Y I QLP++ D G + G V+++
Sbjct: 8 SVFMHELVPEHRVISEEEKEELLRRYRIRLSQLPQIKASDPAVVELGAKPGDVIEIKRKS 67
Query: 224 EITESHVTYRCV 235
++ YR V
Sbjct: 68 PTAGVYLYYRLV 79
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,500,114,525
Number of Sequences: 23463169
Number of extensions: 134099343
Number of successful extensions: 410300
Number of sequences better than 100.0: 724
Number of HSP's better than 100.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 409020
Number of HSP's gapped (non-prelim): 746
length of query: 236
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 98
effective length of database: 9,121,278,045
effective search space: 893885248410
effective search space used: 893885248410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)