BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026620
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1
Length = 211
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 125/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ YG P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDAKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 125/205 (60%), Gaps = 8/205 (3%)
Query: 38 DSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDR-----LRISISHQ 92
++ R + R+TVL+M+ DRGY VA E++ ++ F+ +G P + L I ++H
Sbjct: 7 ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHN 66
Query: 93 SDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
DP+ ++ V F + + I++I Q+ ++ ++ I+++Q +T A +++G +
Sbjct: 67 DDPADQMFVFFPEDTKIGIKTIKAICQQMQEQN-ISRAIIVVQTGMTPSAKQSIGDMAPK 125
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
+ +E F +L+VNIT+H L P+H V+T +EK +LL +Y +++ QLPR+ + D +A+Y+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185
Query: 211 LERGQVVKVTYSGEITESHVTYRCV 235
L RGQVVK+ E ++TYR V
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1
Length = 215
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 122/211 (57%), Gaps = 13/211 (6%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQS 93
+ R+ R + + RTV EM++DRGY + E++LS++DF+A Y D R +S QS
Sbjct: 4 DNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYC-DSMGRPQRKMMSFQS 62
Query: 94 DPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQAT 143
+P++ L V FC V + +++ + I ++ TG I I QN IT A
Sbjct: 63 NPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSAL 121
Query: 144 KAV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKK 202
K + + +E F T L+VNIT H L PKH L+D+EK++LLK+Y ++E QLPR+ +
Sbjct: 122 KLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRM 181
Query: 203 DAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 182 DPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo
abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++FRA +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 13/204 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR-- 98
R + + RTV EM++DRGY + EI+LS++DF+ Y D R +S QS+P++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYC-DSMGKPQRKMMSFQSNPTEESI 69
Query: 99 --------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ 150
+ V FC V V +++ + I ++ TG I I Q+ IT A K +
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 151 FKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
V E F L+VNIT H L PKH L+D EK++LLK+Y ++E QLPR+ + D +A Y
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYL 188
Query: 210 GLERGQVVKVTYSGEITESHVTYR 233
GL+RG+V+K+ E + + +YR
Sbjct: 189 GLKRGEVIKIIRKSETSGRYASYR 212
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB5 PE=1 SV=1
Length = 215
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
R+ R + + RTV EM+KDRGY + E+ L ++DF+A Y D R +S Q++
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYC-DSMGRPQRKMMSFQAN 63
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
P++ + V FC V V +++ + I ++ TG I + QN IT A K
Sbjct: 64 PTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMK 122
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
V + +E F L+VNIT H L PKH L+ EK +LLK+Y ++E QLPR+ + D
Sbjct: 123 LVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRAD 182
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A Y GL+RG+VVK+ E + + +YR
Sbjct: 183 PVALYLGLKRGEVVKIIRKSETSGRYASYR 212
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus
musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 122/209 (58%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3
SV=1
Length = 215
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 13/208 (6%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPS 96
R+ R + + +TV EM++DRGY + EI+LS++DF+A Y D R +S QS+P+
Sbjct: 7 RNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYC-DSMGKPQRKMMSFQSNPT 65
Query: 97 KR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV 146
+ + V FC V V +++ + I ++ TG I I Q+ IT A K +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKIL 124
Query: 147 GLFQFKV-EMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAI 205
V E F L+VNIT H L PKH L++ EK++LLK+Y ++E QLPR+ + D +
Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPV 184
Query: 206 AQYYGLERGQVVKVTYSGEITESHVTYR 233
A Y GL+RG+V+K+ E + + +YR
Sbjct: 185 ALYLGLKRGEVIKIIRKSETSGRYASYR 212
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1
Length = 215
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
Query: 41 RYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKR-- 98
R + + RTV EM++DRGY +A E++L+++DF+ Y D R +S Q++P++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYC-DSMGRAQRKMMSFQANPTEESM 69
Query: 99 --------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-GLF 149
+ V FC V V +++ + I + TG I I QN IT A K V +
Sbjct: 70 TKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIP 128
Query: 150 QFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYY 209
+E F L+VNIT H L PKH L ++EK +LLK+Y ++E QLPR+ + D +A Y
Sbjct: 129 PATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYL 188
Query: 210 GLERGQVVKVTYSGEITESHVTYR 233
GL+RG+VVK+ E + +YR
Sbjct: 189 GLKRGEVVKIIRKSETAGRYASYR 212
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5
PE=3 SV=1
Length = 212
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 112/210 (53%), Gaps = 13/210 (6%)
Query: 35 GSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSD 94
S D+ + + RT E++KDRGY + E+NLS F + DP ++ + +
Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMC-DPMGKPIKKKMCFMAS 60
Query: 95 PSKR----------ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATK 144
PS I V FC V V +R+ I TG IL+ +N +T A +
Sbjct: 61 PSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANR 119
Query: 145 AV-GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKD 203
+ + ++ FQ TDLLVNITKHVL P H L+ EK+ LL++Y ++E QLPR+ ++D
Sbjct: 120 LIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQRED 179
Query: 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233
+A+Y GL RGQ+VK+ E + + +YR
Sbjct: 180 PVARYLGLRRGQIVKIIRRSETSGRYASYR 209
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo
sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V E++ ++++F+A G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb5 PE=1 SV=1
Length = 210
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 37 RDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIY-GQDPDVDRLRISI-SHQSD 94
++ +R + + +T +++ DRGY V+ +E++L++ F+A++ G ++DR +S + S+
Sbjct: 6 KNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSN 65
Query: 95 PSKR--ILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF--Q 150
S + I + F V + +R+ + + + + TG ILI N +T A K + Q
Sbjct: 66 DSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQ 124
Query: 151 FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210
F +E FQ +DL+VNIT H L PKH +L+ EK++LL +Y + E QLPR+ D +A+Y G
Sbjct: 125 FTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLG 184
Query: 211 LERGQVVKVTYSGEITESHVTYR 233
L+RG+VVK+ E + + +YR
Sbjct: 185 LKRGEVVKIVRRSETSGRYNSYR 207
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos
taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 121/209 (57%), Gaps = 8/209 (3%)
Query: 34 NGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLR-----IS 88
+ ++ R + R+T++++ DRGY V ++ ++++F+A +G P R R +
Sbjct: 2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVL 61
Query: 89 ISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAV-- 146
++H DP+ ++ V F V + I+ + Q + + +T ++++Q +T A +++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVD 120
Query: 147 GLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIA 206
++ +E F +LL+NIT+H L P+H V+T +E +LL +Y + E QLPR+ D +A
Sbjct: 121 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVA 180
Query: 207 QYYGLERGQVVKVTYSGEITESHVTYRCV 235
+Y+G++RGQVVK+ E ++TYR V
Sbjct: 181 RYFGIKRGQVVKIIRPSETAGRYITYRLV 209
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1
Length = 214
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
Query: 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91
+++ R R + S +TV EM++DRGY + EI++S+ +FR+ +V + ++ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCF 59
Query: 92 QSDPSKRIL----------VVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQ 141
Q++P+ L V FC V + +R+ I ++ TG I I Q+ IT
Sbjct: 60 QANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPS 118
Query: 142 ATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRML 200
A K + +E FQ DL+VNIT H L PKH L EK++LL++Y ++E QLPR+
Sbjct: 119 ANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQ 178
Query: 201 KKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233
++D + +Y GL+RG+VVK+ E + + +YR
Sbjct: 179 REDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc1
OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 46 RRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCG 105
R+TVL+ML DR Y + E + F + + L + + DP+ I V F
Sbjct: 11 RKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPD 63
Query: 106 PGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLF----QFKVEMFQITDL 161
V V I+ + + +R +I++ QN IT A +A+ F + +E F +L
Sbjct: 64 TPKVGVTQIKKYVDIMKDRQANRAIIVVQQN-ITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
LVNIT H L PKH +LT +EK +LL +Y ++E QLPR+ D +A+YYGL RG VVK+
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVR 182
Query: 222 SGEITESHVTYR-CV 235
E ++TYR CV
Sbjct: 183 PSETAGRYITYRLCV 197
>sp|Q58443|RPOH_METJA DNA-directed RNA polymerase subunit H OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoH PE=1 SV=1
Length = 78
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ +T H+L PKH+++ +E E++LK+Y+I+ +QLP++ + D + Q G + G VV+V
Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 61 SPTAGVSIAYRLV 73
>sp|P11521|RPOH_SULAC DNA-directed RNA polymerase subunit H OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoH PE=1 SV=2
Length = 84
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++I+ H L PKH++L +E KL+K+ I+ +QLP + D +A+ G + G ++K+T
Sbjct: 9 IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68
Query: 223 GEITESHVTYRCV 235
T VTYR V
Sbjct: 69 SPFTGESVTYRYV 81
>sp|O27122|RPOH_METTH DNA-directed RNA polymerase subunit H OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoH PE=1 SV=1
Length = 77
Score = 54.7 bits (130), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
I KH L P+H +L + E +++LK+ +QLP++ D +A+ G +RG +VK+
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 225 ITESHVTYRCV 235
E VTYR V
Sbjct: 65 TAEEFVTYRLV 75
>sp|O28394|RPOH_ARCFU DNA-directed RNA polymerase subunit H OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoH PE=3 SV=1
Length = 76
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H+L PKH+VL+ +E E+LLK I ++QLP++ D IA+ G + G +VK+T
Sbjct: 5 LQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSL 64
Query: 225 ITESHVTYRCV 235
V YR V
Sbjct: 65 TAGESVFYRLV 75
>sp|Q976A3|RPOH_SULTO DNA-directed RNA polymerase subunit H OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoH
PE=3 SV=2
Length = 84
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 155 MFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERG 214
M + + ++ ++H L PKH+VL+ +E K+LK+ I+ +QLP + D IA+ G + G
Sbjct: 1 MRSSSKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPG 60
Query: 215 QVVKVTYSGEITESHVTYRCV 235
++K+T ++ V YR V
Sbjct: 61 DIIKITRKSSLSGEVVVYRYV 81
>sp|Q91F72|454R_IIV6 Putative DNA-directed RNA polymerase subunit 454R OS=Invertebrate
iridescent virus 6 GN=IIV6-454R PE=3 SV=1
Length = 184
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 118 ISQIVN--RDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQ 175
+SQI++ + + +I IT+ K + KVE+F DL +NITK+ L+P
Sbjct: 59 LSQIIDFSSNEYVCVTIICDGSITTNVKKIEQTTKGKVEIFHNKDLQMNITKYHLQPLFN 118
Query: 176 VLTDQEKEKLLKKY---SIEE------KQLPRMLKKDAIAQYYGLERGQVVKVTYSGEIT 226
L D+E + KKY IE + P M K D IA+++ + G V+K+T
Sbjct: 119 KLLDEEAKDFKKKYIKCKIENGKKIILQSFPSMSKSDPIARFFKYQSGDVIKITNK---- 174
Query: 227 ESHVTYRCV 235
+ V+YR V
Sbjct: 175 DGFVSYRIV 183
>sp|A4YCQ7|RPOH_METS5 DNA-directed RNA polymerase subunit H OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoH PE=3 SV=1
Length = 83
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
++ + HVL PKH+VL+ +E K+LK+ I +QLP M D +A+ + G +VK+T
Sbjct: 8 IDPSVHVLVPKHEVLSVEEAFKVLKELGIGPEQLPWMRASDPMARTINAKPGDIVKITRK 67
Query: 223 GEITESHVTYRCV 235
I V YR V
Sbjct: 68 SPIVGELVVYRYV 80
>sp|O74019|RPOH_PYRHO DNA-directed RNA polymerase subunit H OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoH PE=3 SV=1
Length = 82
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEI 63
>sp|Q9V116|RPOH_PYRAB DNA-directed RNA polymerase subunit H OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoH PE=3 SV=1
Length = 82
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI KHVL P+H++L+++EK+ LL+KY I QLP++ D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEI 63
>sp|A6UV53|RPOH_META3 DNA-directed RNA polymerase subunit H OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rpoH PE=3 SV=1
Length = 78
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+V++ +E +KLL KY I+ +QLP++ D + + G + G VVK++ T H T
Sbjct: 10 PKHEVISKEEVQKLLAKYDIKIQQLPKIFDIDPVIEEIGAKPGDVVKISRDSP-TSGHAT 68
Query: 232 Y 232
Y
Sbjct: 69 Y 69
>sp|C6A1F8|RPOH_THESM DNA-directed RNA polymerase subunit H OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoH PE=3 SV=1
Length = 82
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ I HVL P+H+VL+ +E E+LLKKY+I+ QLP++ D Q + G ++++
Sbjct: 7 LTIFDHVLVPEHRVLSKEETEELLKKYNIKPSQLPQIKTSDPAVQALDAKPGDIIEIKRK 66
Query: 223 GEITESHVTYRCV 235
+ YR V
Sbjct: 67 SPTAGVYYYYRIV 79
>sp|P61519|RPOH_METMP DNA-directed RNA polymerase subunit H OS=Methanococcus maripaludis
(strain S2 / LL) GN=rpoH PE=3 SV=1
Length = 78
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ I+ H + P H+++ +E LL+KYSI+ +Q P++L D + G G VVK+T
Sbjct: 1 MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>sp|A0B555|RPOH_METTP DNA-directed RNA polymerase subunit H OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoH PE=3 SV=1
Length = 78
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H L P+H +LT +E +++L +Y +E + LP++ D +A+ G + G ++K+
Sbjct: 6 VQDHELVPEHILLTPEEAQQVLMQYGVEARHLPKIHVTDPVAKEIGAKVGDIIKIKRKSP 65
Query: 225 ITESHVTYRCV 235
+ + YR V
Sbjct: 66 TAKESIFYRLV 76
>sp|Q2NEK1|RPOH_METST DNA-directed RNA polymerase subunit H OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rpoH PE=3 SV=1
Length = 77
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
+I +H L P+H +L+++E +K+L ++ Q+P++L D + + + G ++K+T
Sbjct: 4 DILQHKLVPEHTILSEEEAQKVLDDLNVRLDQIPKILPTDPVVKAIDAKVGDILKITRKS 63
Query: 224 EITESHVTYRCV 235
E V YR V
Sbjct: 64 ETAGIFVAYRVV 75
>sp|Q8U0M2|RPOH_PYRFU DNA-directed RNA polymerase subunit H OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoH
PE=3 SV=1
Length = 82
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
+I HVL P+H+VL+++EK+ LL+KY I QLP++ D + G + G V+++
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEI 63
>sp|A2SSM7|RPOH_METLZ DNA-directed RNA polymerase subunit H OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoH
PE=3 SV=1
Length = 82
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+N+ H + P HQ++TD++ + LL + I E LP++ D + G + G V+ +
Sbjct: 4 LNVLLHEMVPDHQIMTDEDVKNLLTTFDITEDHLPKIYHDDPAVKACGAKPGNVIMIVRK 63
Query: 223 GEITESHVTYRCV 235
+ +YR V
Sbjct: 64 SQTAGEATSYRLV 76
>sp|C3N7P8|RPOH_SULIY DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3NFS5|RPOH_SULIN DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3MY97|RPOH_SULIM DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3MRK1|RPOH_SULIL DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C4KIV6|RPOH_SULIK DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|C3MZM6|RPOH_SULIA DNA-directed RNA polymerase subunit H OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoH PE=3 SV=1
Length = 84
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL+ E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|P41559|RPOH_METVS DNA-directed RNA polymerase subunit H OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoH PE=3 SV=1
Length = 78
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + P+H+++ E LL+KY I+ +Q P++L D + G + G +VK+T
Sbjct: 1 MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60
Query: 223 GEITESHVTYRCV 235
+ V +R V
Sbjct: 61 SQTAGETVYFRLV 73
>sp|Q12WS3|RPOH_METBU DNA-directed RNA polymerase subunit H OS=Methanococcoides burtonii
(strain DSM 6242) GN=rpoH PE=3 SV=1
Length = 78
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
++ H L P H+++ + + + +L Y++E +QLP++ D IA G E G VVKV
Sbjct: 5 SLLDHELIPHHEIMDEDDLKTVLTHYNVEREQLPKLKVTDPIALEIGAEPGDVVKVIRKS 64
Query: 224 EITESHVTYRCV 235
+ + YR V
Sbjct: 65 QTAGEALYYRYV 76
>sp|Q980Q9|RPOH_SULSO DNA-directed RNA polymerase subunit H OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoH
PE=1 SV=1
Length = 84
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H L PKH+VL E K+LK+ I +QLP + D +A+ + G ++++ ++
Sbjct: 14 HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73
Query: 228 SHVTYRCV 235
V+YR V
Sbjct: 74 EVVSYRYV 81
>sp|P0CX06|RPOH_HALSA DNA-directed RNA polymerase subunit H OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoH PE=3
SV=1
Length = 75
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL ++ + +L Y I+ +LP++ KD A E G VV++
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>sp|B0R8D7|RPOH_HALS3 DNA-directed RNA polymerase subunit H OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoH PE=3 SV=1
Length = 75
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 162 LVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221
+V++++H L P+H VL ++ + +L Y I+ +LP++ KD A E G VV++
Sbjct: 1 MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59
Query: 222 SGEITESHVTYRCV 235
T+ V YR V
Sbjct: 60 DSRTTDEAVVYRLV 73
>sp|Q464Y4|RPOH_METBF DNA-directed RNA polymerase subunit H OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+++ + E + +L KYSIE++QLP++ D + + G G VVK+T +
Sbjct: 13 PKHEIMPEGELKSVLSKYSIEKEQLPKIKVHDPVCKEIGAVVGDVVKITRISQTAGEAEY 72
Query: 232 YRCV 235
YR V
Sbjct: 73 YRLV 76
>sp|Q8PUQ8|RPOH_METMA DNA-directed RNA polymerase subunit H OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 168 HVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITE 227
H PKH+++++ E + +L KY IE++QLP++ +D + + G G VVK+T +
Sbjct: 9 HEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKSQTAG 68
Query: 228 SHVTYRCV 235
YR V
Sbjct: 69 EADYYRLV 76
>sp|A6VGU6|RPOH_METM7 DNA-directed RNA polymerase subunit H OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rpoH PE=3 SV=1
Length = 78
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYS 222
+ ++ H + P H+++ +E LL+KY+I+ +QLP++L D + G V+K+T
Sbjct: 1 MKVSSHAMVPTHEIIPREEIPLLLEKYNIKLQQLPKLLDTDPLVLEVEAAPGDVLKITRM 60
Query: 223 GEITESHVTYRCV 235
YR V
Sbjct: 61 SPTAGESTYYRLV 73
>sp|A2BN32|RPOH_HYPBU DNA-directed RNA polymerase subunit H OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=rpoH PE=3 SV=1
Length = 83
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKV 219
NI +H L PKH+V+ +E +++++ + +QLP + D +A+ G + G +V++
Sbjct: 9 NILEHELVPKHEVVPPEEAARIIRELGVRPEQLPWLRATDPVARAIGAKPGDIVRI 64
>sp|A9A458|RPOH_NITMS DNA-directed RNA polymerase subunit H OS=Nitrosopumilus maritimus
(strain SCM1) GN=rpoH PE=3 SV=1
Length = 83
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 165 ITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGE 224
+ H+ PKH++++ E E++LKKY+ + +LP + D G++ G ++K+T
Sbjct: 10 VPDHIYVPKHEIISKTEAEEVLKKYNCKPTELPLIFVNDPAILGLGVKPGDMIKITRKSP 69
Query: 225 ITESHVTYRCV 235
+ YR V
Sbjct: 70 TAGEGLYYRYV 80
>sp|A3DMP2|RPOH_STAMF DNA-directed RNA polymerase subunit H OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rpoH PE=3 SV=1
Length = 91
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 164 NITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSG 223
NI +H L PKH+VL+ +E +LL+K I+ QLP + D + + + G ++++
Sbjct: 7 NILEHELVPKHEVLSVREAAELLRKLKIKPAQLPWISIDDPVVKAIKAKPGDIIRIIRKS 66
Query: 224 EITESHVTYRCV 235
+ YR V
Sbjct: 67 PTAGEAIAYRYV 78
>sp|Q8TRB4|RPOH_METAC DNA-directed RNA polymerase subunit H OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoH
PE=3 SV=1
Length = 78
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 172 PKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVT 231
PKH+++++ E + +L KY IE++QLP++ +D +++ G G VV++T +
Sbjct: 13 PKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKSQTAGEADY 72
Query: 232 YRCV 235
YR V
Sbjct: 73 YRLV 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,294,570
Number of Sequences: 539616
Number of extensions: 3270521
Number of successful extensions: 11666
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 11569
Number of HSP's gapped (non-prelim): 143
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)