Query 026620
Match_columns 236
No_of_seqs 139 out of 345
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 6.7E-77 2.3E-81 518.9 11.9 204 32-236 1-210 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 1.3E-75 4.5E-80 512.1 13.6 203 32-236 3-215 (215)
3 1eik_A RNA polymerase subunit 100.0 4.7E-40 1.6E-44 247.0 7.3 76 161-236 1-76 (77)
4 1hmj_A RPB5, protein (subunit 100.0 6.3E-39 2.2E-43 241.3 6.7 74 163-236 1-74 (78)
5 4ayb_H DNA-directed RNA polyme 100.0 1.6E-37 5.4E-42 236.8 6.9 79 158-236 4-82 (84)
6 1ug1_A KIAA1010 protein; struc 70.2 4.3 0.00015 31.0 3.8 49 178-228 3-53 (92)
7 2jmk_A Hypothetical protein TA 61.7 28 0.00097 26.9 6.9 57 69-128 46-106 (111)
8 2yxb_A Coenzyme B12-dependent 57.4 15 0.0005 29.4 5.0 84 49-150 38-121 (161)
9 3ezx_A MMCP 1, monomethylamine 55.3 37 0.0013 28.4 7.4 78 49-142 112-191 (215)
10 2p4v_A Transcription elongatio 52.3 17 0.00057 29.5 4.5 35 197-235 116-151 (158)
11 2pn0_A Prokaryotic transcripti 50.8 15 0.0005 29.2 3.9 36 197-235 89-125 (141)
12 3bmb_A Regulator of nucleoside 48.6 16 0.00056 28.6 3.8 35 198-235 87-122 (136)
13 2f23_A Anti-cleavage anti-GREA 47.2 18 0.00063 29.0 4.0 35 197-235 117-152 (156)
14 3e19_A FEOA; transcriptional r 47.0 20 0.00067 24.9 3.7 23 209-233 34-56 (77)
15 1y88_A Hypothetical protein AF 43.8 21 0.00071 30.3 4.0 66 123-190 90-161 (199)
16 2k4y_A FEOA-like protein; GFT 43.7 23 0.0008 25.3 3.7 35 198-233 20-57 (86)
17 3r8n_Q 30S ribosomal protein S 43.0 22 0.00074 26.1 3.4 35 195-235 37-73 (80)
18 3mhx_A Putative ferrous iron t 40.5 35 0.0012 24.2 4.2 25 209-233 34-58 (85)
19 4f0q_A Restriction endonucleas 40.5 16 0.00054 35.0 2.9 50 105-157 361-410 (456)
20 3o27_A Putative uncharacterize 36.6 22 0.00077 25.6 2.6 32 204-235 32-63 (68)
21 2h3j_A Hypothetical protein PA 34.8 35 0.0012 23.2 3.4 20 209-228 30-49 (75)
22 2gcx_A FEOA, ferrous iron tran 34.7 32 0.0011 23.6 3.2 24 209-233 29-52 (75)
23 2k5l_A FEOA; structure, NESG, 34.1 34 0.0011 24.1 3.2 35 198-233 17-54 (81)
24 1wd5_A Hypothetical protein TT 33.4 1.3E+02 0.0046 24.3 7.3 75 110-189 132-206 (208)
25 2vqe_Q 30S ribosomal protein S 31.3 31 0.001 26.7 2.7 33 197-235 40-74 (105)
26 3rnj_A Brain-specific angiogen 28.8 26 0.0009 23.3 1.8 16 208-223 24-39 (67)
27 1k1z_A VAV; SH3, proto-oncogen 28.3 39 0.0013 23.2 2.7 17 207-223 33-49 (78)
28 1grj_A GREA protein; transcrip 27.6 19 0.00065 29.0 1.0 27 198-224 119-146 (158)
29 1gcq_C VAV proto-oncogene; SH3 27.5 41 0.0014 22.4 2.6 16 208-223 26-41 (70)
30 2v1q_A SLA1, cytoskeleton asse 27.5 43 0.0015 21.5 2.6 16 208-223 18-33 (60)
31 1mfg_A ERB-B2 interacting prot 27.2 26 0.00089 24.6 1.6 19 199-219 42-60 (95)
32 3idw_A Actin cytoskeleton-regu 27.0 2.8 9.7E-05 30.7 -3.6 36 184-221 24-59 (72)
33 2a28_A BZZ1 protein; SH3 domai 26.7 47 0.0016 21.0 2.7 17 208-224 16-32 (54)
34 1wjn_A Tubulin-folding protein 26.0 48 0.0016 23.9 2.9 22 206-227 76-97 (97)
35 1vjf_A DNA-binding protein, pu 25.9 22 0.00075 28.9 1.1 47 173-219 10-58 (180)
36 2lx9_A Ferrous iron transport 25.7 56 0.0019 23.3 3.2 24 209-233 29-52 (83)
37 1zc1_A Ubiquitin fusion degrad 25.3 53 0.0018 28.2 3.4 30 204-233 99-128 (208)
38 1ri9_A FYN-binding protein; SH 25.2 1.1E+02 0.0037 23.5 4.9 51 175-225 16-74 (102)
39 2yuj_A Ubiquitin fusion degrad 24.9 62 0.0021 27.3 3.8 35 199-233 89-123 (190)
40 2kjp_A Uncharacterized protein 24.7 30 0.001 24.8 1.6 20 199-220 8-27 (91)
41 1g2b_A Spectrin alpha chain; c 24.7 47 0.0016 21.7 2.5 16 208-223 37-52 (62)
42 1y80_A Predicted cobalamin bin 24.5 2.1E+02 0.007 23.1 6.9 76 47-140 106-183 (210)
43 2j6f_A CD2-associated protein; 24.5 47 0.0016 21.7 2.4 16 208-223 17-32 (62)
44 1n7t_A 99-MER peptide of densi 24.3 34 0.0012 24.4 1.8 19 198-218 49-67 (103)
45 2bz8_A SH3-domain kinase bindi 24.1 46 0.0016 21.3 2.3 16 208-223 17-32 (58)
46 2l66_A SSO7C4, transcriptional 23.9 47 0.0016 21.8 2.3 20 204-223 19-38 (53)
47 4a8j_B Elongator complex prote 23.7 1.2E+02 0.0041 27.1 5.5 41 176-236 178-222 (270)
48 1cka_A C-CRK N-terminal SH3 do 23.6 47 0.0016 21.1 2.3 17 208-224 17-33 (57)
49 1zuu_A BZZ1 protein; SH3 domai 23.6 48 0.0016 21.1 2.3 17 208-224 17-33 (58)
50 1vki_A Hypothetical protein AT 23.4 44 0.0015 27.0 2.5 47 173-219 15-63 (181)
51 2jt4_A Cytoskeleton assembly c 23.3 55 0.0019 21.7 2.6 16 208-223 22-37 (71)
52 1yx5_B Ubiquitin; proteasome, 23.1 1.3E+02 0.0045 21.2 4.9 53 182-235 27-84 (98)
53 2kl1_A YLBL protein; structure 22.9 34 0.0012 24.4 1.6 20 199-220 12-31 (94)
54 1jo8_A ABP1P, actin binding pr 22.9 51 0.0018 21.1 2.3 16 208-223 16-31 (58)
55 1qd7_I S17 ribosomal protein; 22.6 80 0.0027 23.5 3.6 36 196-235 38-73 (89)
56 2eyx_A V-CRK sarcoma virus CT1 22.6 38 0.0013 22.7 1.7 16 208-223 24-39 (67)
57 1zuy_A Myosin-5 isoform; SH3 d 22.6 47 0.0016 21.1 2.1 17 208-224 17-33 (58)
58 3i18_A LMO2051 protein; alpha- 22.2 45 0.0015 23.9 2.1 20 199-220 14-33 (100)
59 3eg3_A Proto-oncogene tyrosine 22.1 57 0.0019 21.0 2.4 16 208-223 21-36 (63)
60 3j20_R 30S ribosomal protein S 21.9 58 0.002 25.4 2.8 36 197-235 68-103 (113)
61 2x3w_D Syndapin I, protein kin 21.6 48 0.0017 21.3 2.0 16 208-223 19-34 (60)
62 1sem_A SEM-5; SRC-homology 3 ( 21.3 56 0.0019 20.8 2.3 16 208-223 18-33 (58)
63 4e6r_A Cytoplasmic protein NCK 21.2 49 0.0017 20.9 2.0 16 208-223 17-32 (58)
64 2lx7_A GAS-7, growth arrest-sp 20.9 37 0.0013 23.0 1.3 17 208-224 20-36 (60)
65 1b07_A Protein (proto-oncogene 20.7 57 0.002 21.7 2.3 17 208-224 19-35 (65)
66 2ogg_A Trehalose operon transc 20.7 44 0.0015 25.0 1.8 24 199-222 19-43 (152)
67 2ebp_A SAM and SH3 domain-cont 20.6 56 0.0019 22.3 2.3 17 207-223 26-42 (73)
68 2g6f_X RHO guanine nucleotide 20.5 54 0.0019 21.1 2.1 18 207-224 19-36 (59)
69 1tuc_A Alpha-spectrin; capping 20.5 60 0.002 21.4 2.3 17 208-224 5-21 (63)
70 2fpe_A C-JUN-amino-terminal ki 20.5 54 0.0019 21.3 2.1 16 208-223 19-34 (62)
71 2vwf_A Growth factor receptor- 20.4 62 0.0021 20.6 2.3 16 208-223 18-33 (58)
72 2k5f_A Ferrous iron transport 20.3 79 0.0027 23.7 3.2 25 208-233 29-53 (105)
73 2enm_A Sorting nexin-9; SH3-li 20.0 79 0.0027 21.4 3.0 16 208-223 26-41 (77)
74 1fx7_A Iron-dependent represso 20.0 63 0.0022 26.7 2.9 27 204-233 179-208 (230)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-77 Score=518.90 Aligned_cols=204 Identities=31% Similarity=0.531 Sum_probs=197.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCcccCccccccCHHHHHHHhCCC---CCCCceEEEeecCCCC-CCcEEEEecCCC
Q 026620 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQD---PDVDRLRISISHQSDP-SKRILVVFCGPG 107 (236)
Q Consensus 32 m~~~~~e~~rl~r~rrTv~eMl~DRGY~v~~~el~~sl~eF~~~y~~~---~~r~~L~~~~~~~~~p-~~~I~VfF~~~~ 107 (236)
|+.++.|++||||+|||++|||+||||.|+++|+++|+++|+++|++. |+|++|+|++.+.+|| +++|+|||++++
T Consensus 1 m~~~~~e~~rl~rirrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~ 80 (210)
T 3h0g_E 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP 80 (210)
T ss_dssp ---CTHHHHHHHGGGSSSSSTTTTTTEECCTTTTSCCHHHHHHHSCCSSSSCCCSSCCCEEEESSCSSCCCEEEECCCSS
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCccCHHHHhCCHHHHHHHhcccCCCCCchheEEEEEcCCCCccCeEEEEECCCC
Confidence 566788999999999999999999999999999999999999999875 8899999999999999 999999999999
Q ss_pred ccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHhhhcc--ceEeeeeeceeeeecccccccCceeecChHHHHHH
Q 026620 108 IVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ--FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKL 185 (236)
Q Consensus 108 ~vgvk~Ir~~~~~~~~~en~~~~IiV~q~~lt~~Ark~l~~~~--~~IEiF~e~eLl~nit~H~lVPkH~~Ls~eEk~~l 185 (236)
+||+|+||.|++++ .++|++++|||+|+++||+|++++.+++ ++||+|+++||+||||+|+|||+|++||+|||++|
T Consensus 81 ~vgvk~Ir~~~~~~-~~en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eE~~~l 159 (210)
T 3h0g_E 81 SVGIKEMRTFVHTL-GDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKEL 159 (210)
T ss_dssp SCCTTTTGGGTHHH-HHTTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBCCEECCCHHHHHHH
T ss_pred ccChHHHHHHHHHH-HHcCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccCcEEEcCHHHHHHH
Confidence 99999999999999 9999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred HhhhcCCcccCCccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEeC
Q 026620 186 LKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236 (236)
Q Consensus 186 l~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V~ 236 (236)
|++|+++++|||||+.+||+|+||||++||||||+|+|+|||+|++||+|+
T Consensus 160 L~~y~i~~~qLP~I~~~DPv~~~~g~k~GdVvkI~R~s~tag~~v~YR~V~ 210 (210)
T 3h0g_E 160 LDRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYRICA 210 (210)
T ss_dssp HHHTCCCTTTSCCCCTTCHHHHHHTCCTTCEEEEECCCCTTSCCEEEEECC
T ss_pred HHHcCCCHHHCCcccccCcchhhhCCCCCCEEEEEeCCCCCCCceEEEEeC
Confidence 999999999999999999999999999999999999999999999999996
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=1.3e-75 Score=512.13 Aligned_cols=203 Identities=34% Similarity=0.573 Sum_probs=196.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCcccCccccccCHHHHHHHhCC---CCCCCceEEEeecCCCCCCcE------EEE
Q 026620 32 VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQ---DPDVDRLRISISHQSDPSKRI------LVV 102 (236)
Q Consensus 32 m~~~~~e~~rl~r~rrTv~eMl~DRGY~v~~~el~~sl~eF~~~y~~---~~~r~~L~~~~~~~~~p~~~I------~Vf 102 (236)
|+ ++.++.||||+|||++|||+||||.|+++|+++|+++|+++||+ .|+|++|+|++++.+||++++ +||
T Consensus 3 m~-~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~g~p~r~~L~~~~~~~~d~~~k~~~~~~~~Vf 81 (215)
T 1dzf_A 3 QE-NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVE 81 (215)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEE
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhcCCCccCHhHhcCCHHHHHHHHccccCCCchhheEEEecCCCChhhhhccCCceEEE
Confidence 44 45889999999999999999999999999999999999999987 789999999999999999888 999
Q ss_pred ecCCCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHhhhcc-ceEeeeeeceeeeecccccccCceeecChHH
Q 026620 103 FCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQ-FKVEMFQITDLLVNITKHVLKPKHQVLTDQE 181 (236)
Q Consensus 103 F~~~~~vgvk~Ir~~~~~~~~~en~~~~IiV~q~~lt~~Ark~l~~~~-~~IEiF~e~eLl~nit~H~lVPkH~~Ls~eE 181 (236)
|+++++||+|+||+|+++| +++|++++|||+|+++||+|++++++++ ++||+|+|+||+||||+|+|||+|++||+||
T Consensus 82 F~~~~~vgvk~ir~~~~~~-~~e~~~~~IlV~q~~itp~Ak~~l~~~~~~~iE~F~e~eL~vni~~H~lVP~H~~l~~eE 160 (215)
T 1dzf_A 82 FCDEPSVGVKTMKTFVIHI-QEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDE 160 (215)
T ss_dssp ECSSSEECHHHHHHHHHHH-HHTTCSEEEEEESSEECHHHHTTTTSSTTCEEEEEEHHHHSSCGGGSTTSCEEEECCHHH
T ss_pred ecCCCccchHHHHHHHHHH-HhcCCceEEEEECCCCChHHHHHHHHhcCceEEEeehHHheeccccceeccceEEccHHH
Confidence 9999999999999999999 9999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcccCCccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEeC
Q 026620 182 KEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236 (236)
Q Consensus 182 k~~ll~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V~ 236 (236)
|++||++|+++++|||||+.+||+||||||++||||||+|+|+|||+|++||+|+
T Consensus 161 ~~~lL~~y~i~~~qLP~I~~~DPvar~~g~k~G~vvkI~R~s~tag~~v~YR~vv 215 (215)
T 1dzf_A 161 KRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM 215 (215)
T ss_dssp HHHHHHHTTCCGGGSCEECTTCHHHHHHTCCTTCEEEEECTTCSSSTTCEEEEEC
T ss_pred HHHHHHHcCCCHHHCCceeccChhhHHhCCcCCCEEEEEECCCCCCCceEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999996
No 3
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=100.00 E-value=4.7e-40 Score=247.01 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=75.0
Q ss_pred eeeecccccccCceeecChHHHHHHHhhhcCCcccCCccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEeC
Q 026620 161 LLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236 (236)
Q Consensus 161 Ll~nit~H~lVPkH~~Ls~eEk~~ll~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V~ 236 (236)
|+||||+|+|||+|++||+|||++||++|+++++|||||+.+||+|||||+++||||||+|+|+|||+|++||+|+
T Consensus 1 l~vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLP~I~~~DPvar~~G~k~GdVvkI~R~S~taG~~v~YR~Vv 76 (77)
T 1eik_A 1 MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQ 76 (77)
T ss_dssp CCCCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCBTTSHHHHGGGCCTTCEEEEEEEETTTEEEEEEEECB
T ss_pred CcccCccceecCCEEEcCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECCCCCCCcEEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=100.00 E-value=6.3e-39 Score=241.33 Aligned_cols=74 Identities=34% Similarity=0.653 Sum_probs=73.1
Q ss_pred eecccccccCceeecChHHHHHHHhhhcCCcccCCccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEeC
Q 026620 163 VNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236 (236)
Q Consensus 163 ~nit~H~lVPkH~~Ls~eEk~~ll~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V~ 236 (236)
||||+|+|||+|++||+|||++||++|+++++|||||+.+||+|||||+++||||||+|+|+|||+|++||+|+
T Consensus 1 vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPvar~~G~k~GdVvkI~R~S~taG~~v~YR~Vv 74 (78)
T 1hmj_A 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAGVSIAYRLVI 74 (78)
T ss_pred CCccceeeCCCeEECCHHHHHHHHHHcCCCHHHCCeeeCcCHhhHHhCCCCCCEEEEEECCCCCCCcEEEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999996
No 5
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=100.00 E-value=1.6e-37 Score=236.82 Aligned_cols=79 Identities=28% Similarity=0.456 Sum_probs=74.4
Q ss_pred eceeeeecccccccCceeecChHHHHHHHhhhcCCcccCCccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEeC
Q 026620 158 ITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236 (236)
Q Consensus 158 e~eLl~nit~H~lVPkH~~Ls~eEk~~ll~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V~ 236 (236)
.+.++||||+|+|||+|++||+||+++||++|+++++|||+|+.+||+|+|||++|||||||+|+|+|||++++||+|+
T Consensus 4 ~~~~~~Ni~~H~LVPkH~vLs~eE~~~ll~~y~i~~~qLP~I~~~DPva~~~g~k~GdVvkI~R~S~tag~~~~YR~vv 82 (84)
T 4ayb_H 4 SSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI 82 (84)
T ss_dssp ----CCCCSSSSSCCEEEECCHHHHHHHHHHHTCCGGGSCCEESSSHHHHHHTCCTTCEEEEEEEETTTEEEEEEEEEE
T ss_pred cccceecccccccCCCeEECCHHHHHHHHHHhcCCHhHCCeecccCHhHHhhCCCCCCEEEEEEcCCCCCccEEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=70.17 E-value=4.3 Score=30.98 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=37.9
Q ss_pred ChHHHHHHHhhhcCC-cccC-CccccCCchhhhcCCCCCCEEEEEecCCCCcc
Q 026620 178 TDQEKEKLLKKYSIE-EKQL-PRMLKKDAIAQYYGLERGQVVKVTYSGEITES 228 (236)
Q Consensus 178 s~eEk~~ll~~y~i~-~~qL-P~I~~~DPvary~g~~~GdVvkI~R~s~tag~ 228 (236)
++..+..||.+|..+ ..|. |.+..++++ -+.+++||+|-|+.+..+.|.
T Consensus 3 t~~qr~~L~~~y~~~~LY~~t~~~~~tq~~--dl~l~~GdlVAVl~k~Dp~Gn 53 (92)
T 1ug1_A 3 SGSSGASLLARYPPEKLFQAERNFNAAQDL--DVSLLEGDLVGVIKKKDPMGS 53 (92)
T ss_dssp HHHHHHHHHHHSCGGGEEEESSCCCCCSSS--CCCCCTTCEEEEEESCCTTSC
T ss_pred hHHHHHHHHhhCCchheEEeccCcCCCCce--eeeecCCCEEEEEecCCCCCC
Confidence 466789999999963 4444 677777654 478999999999999877765
No 7
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=61.74 E-value=28 Score=26.85 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=42.4
Q ss_pred HHHHHHHhCC--C--CCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCCCc
Q 026620 69 VQDFRAIYGQ--D--PDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLT 128 (236)
Q Consensus 69 l~eF~~~y~~--~--~~r~~L~~~~~~~~~p~~~I~VfF~~~~~vgvk~Ir~~~~~~~~~en~~ 128 (236)
+.+|.++|.- . |.-...-|++ -+...+-+-|-|.+......+.|+++++.. ...+++
T Consensus 46 l~dFIsryARTDEImPEDKTvGFvv--iN~dKK~mSvsFsd~~~~~K~~i~ei~kky-kd~Gyk 106 (111)
T 2jmk_A 46 MMDFISRFARTDEIMPEDKTVGFVV--VNADKKLMSVSFSDIDENMKKVIKATAEKF-KNKGFK 106 (111)
T ss_dssp HHHHHHHHCCCSCCCSSCEEEEEEE--EETTTTEEEEEECSCCTTHHHHHHHHHHHG-GGGCCE
T ss_pred HHHHHHHhhcccccCCCCceeEEEE--EecCCeEEEEEeehhhhhHHHHHHHHHHHh-hcCCce
Confidence 8999999953 2 4444455554 445556789999998888899999999998 666654
No 8
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=57.41 E-value=15 Score=29.45 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=51.6
Q ss_pred HHHHhcCCCcccCccccccCHHHHHHHhCCCCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCCCc
Q 026620 49 VLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLT 128 (236)
Q Consensus 49 v~eMl~DRGY~v~~~el~~sl~eF~~~y~~~~~r~~L~~~~~~~~~p~~~I~VfF~~~~~vgvk~Ir~~~~~~~~~en~~ 128 (236)
+.-||++.||.|..-....+.++|.+...+. +| +-|.+.+.. .-.+..++++++.+ .+.+..
T Consensus 38 va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~--------------~~-diV~lS~~~--~~~~~~~~~~i~~L-~~~g~~ 99 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLRQTPEQVAMAAVQE--------------DV-DVIGVSILN--GAHLHLMKRLMAKL-RELGAD 99 (161)
T ss_dssp HHHHHHHTTCEEECCCSBCCHHHHHHHHHHT--------------TC-SEEEEEESS--SCHHHHHHHHHHHH-HHTTCT
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--------------CC-CEEEEEeec--hhhHHHHHHHHHHH-HhcCCC
Confidence 4468899999999888889999998765211 11 112222222 24567888999888 666653
Q ss_pred EEEEEEcCCCCHHHHHHhhhcc
Q 026620 129 GLILILQNQITSQATKAVGLFQ 150 (236)
Q Consensus 129 ~~IiV~q~~lt~~Ark~l~~~~ 150 (236)
...|++.+.+.+..-..+..++
T Consensus 100 ~i~v~vGG~~~~~~~~~l~~~G 121 (161)
T 2yxb_A 100 DIPVVLGGTIPIPDLEPLRSLG 121 (161)
T ss_dssp TSCEEEEECCCHHHHHHHHHTT
T ss_pred CCEEEEeCCCchhcHHHHHHCC
Confidence 3445556666654333344444
No 9
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=55.30 E-value=37 Score=28.37 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=52.3
Q ss_pred HHHHhcCCCcccCccccccCHHHHHHHhCCCCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCCC-
Q 026620 49 VLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL- 127 (236)
Q Consensus 49 v~eMl~DRGY~v~~~el~~sl~eF~~~y~~~~~r~~L~~~~~~~~~p~~~I~VfF~~~~~vgvk~Ir~~~~~~~~~en~- 127 (236)
+.-||+++||.|..--.+.+.++|.+.-.. .+| +-|.+-|+.-..-.+..++++++.+ .+.+.
T Consensus 112 v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--------------~~~-d~v~l~~S~l~~~~~~~~~~~i~~l-~~~~~~ 175 (215)
T 3ezx_A 112 VTTMLGANGFQIVDLGVDVLNENVVEEAAK--------------HKG-EKVLLVGSALMTTSMLGQKDLMDRL-NEEKLR 175 (215)
T ss_dssp HHHHHHHTSCEEEECCSSCCHHHHHHHHHH--------------TTT-SCEEEEEECSSHHHHTHHHHHHHHH-HHTTCG
T ss_pred HHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--------------cCC-CEEEEEchhcccCcHHHHHHHHHHH-HHcCCC
Confidence 456999999999987788899999765411 122 2244433443344567799999999 77776
Q ss_pred -cEEEEEEcCCCCHHH
Q 026620 128 -TGLILILQNQITSQA 142 (236)
Q Consensus 128 -~~~IiV~q~~lt~~A 142 (236)
+--|+|-...+++..
T Consensus 176 ~~v~v~vGG~~~~~~~ 191 (215)
T 3ezx_A 176 DSVKCMFGGAPVSDKW 191 (215)
T ss_dssp GGSEEEEESSSCCHHH
T ss_pred CCCEEEEECCCCCHHH
Confidence 445666655666543
No 10
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=52.28 E-value=17 Score=29.47 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=28.2
Q ss_pred CccccCCchhhhc-CCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 197 PRMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 197 P~I~~~DPvary~-g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
=+|+..-|+++.| |.+.||.|.+.-++. ...|+++
T Consensus 116 ~~IS~~SPlg~ALlGk~vGD~v~v~~P~G----~~~~~I~ 151 (158)
T 2p4v_A 116 DYISIDSPMARALLKKEVGDLAVVNTPAG----EASWYVN 151 (158)
T ss_dssp CCBCTTSHHHHHSTTCCTTCEEEEECSSC----EEEEEEE
T ss_pred CeecCCCHHHHHhcCCCCCCEEEEEcCCC----cEEEEEE
Confidence 3899999999875 999999999998763 2566654
No 11
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=50.77 E-value=15 Score=29.18 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=28.4
Q ss_pred CccccCCchhhhc-CCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 197 PRMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 197 P~I~~~DPvary~-g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
=+|+..-|+++.| |.+.||.|.+.-++ |....|+++
T Consensus 89 ~~IS~~SPlG~ALlGk~vGD~v~v~~P~---G~~~~~~I~ 125 (141)
T 2pn0_A 89 EKISILAPVGSALLGLAQGDEIEWPKPG---GGVLRVRIV 125 (141)
T ss_dssp CEEETTSTTHHHHTTCBTTCEEEEECTT---SSEEEEEEE
T ss_pred CEEcCCCHHHHHHcCCCCCCEEEEEcCC---CCEEEEEEE
Confidence 4799999999865 99999999998876 334566654
No 12
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=48.57 E-value=16 Score=28.60 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=27.9
Q ss_pred ccccCCchhhhc-CCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 198 RMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 198 ~I~~~DPvary~-g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
+|+..-|+++.| |.+.||.|.+.-++ |+...|+++
T Consensus 87 ~IS~~SPlG~ALlGk~~GD~v~v~~p~---G~~~~~~I~ 122 (136)
T 3bmb_A 87 QLSVMAPVGAALLGLRVGDSIHWELPG---GVATHLEVL 122 (136)
T ss_dssp EEETTSHHHHHHTTCBTTCEEEEEETT---TEEEEEEEE
T ss_pred EecCCCHHHHHHcCCCCCCEEEEEcCC---CCEEEEEEE
Confidence 899999999875 99999999998876 324566653
No 13
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=47.24 E-value=18 Score=28.96 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=28.4
Q ss_pred CccccCCchhhhc-CCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 197 PRMLKKDAIAQYY-GLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 197 P~I~~~DPvary~-g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
-+|+..-|+++.| |.+.||.|.+.-++. ...|+++
T Consensus 117 ~~IS~~SPlG~ALlGk~~GD~v~~~~p~G----~~~~~I~ 152 (156)
T 2f23_A 117 MKISDASPMGKALLGHRVGDVLSLDTPKG----KREFRVV 152 (156)
T ss_dssp EEEETTSHHHHHHTTCCTTCEEEEEETTE----EEEEEEE
T ss_pred EEECCCCHHHHHHcCCCCCCEEEEEcCCC----cEEEEEE
Confidence 4899999999865 999999999998863 2466654
No 14
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=47.00 E-value=20 Score=24.94 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.2
Q ss_pred cCCCCCCEEEEEecCCCCcceeEEE
Q 026620 209 YGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 209 ~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
+|+.||..|++.+.++- | .+.++
T Consensus 34 lGi~~G~~v~v~~~~p~-g-p~~v~ 56 (77)
T 3e19_A 34 MGLTPGATIQVLESHPM-G-PIIIS 56 (77)
T ss_dssp TTCSTTCEEEEEEC--C-C-CEEEE
T ss_pred CCCCCCCEEEEEEecCC-C-CEEEE
Confidence 59999999999999875 6 55554
No 15
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=43.84 E-value=21 Score=30.31 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=45.8
Q ss_pred hcCCCcEEEEEEcCCCCHHHHHHhhhccceEeeee-----eceeeeecccccccCc-eeecChHHHHHHHhhhc
Q 026620 123 NRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQ-----ITDLLVNITKHVLKPK-HQVLTDQEKEKLLKKYS 190 (236)
Q Consensus 123 ~~en~~~~IiV~q~~lt~~Ark~l~~~~~~IEiF~-----e~eLl~nit~H~lVPk-H~~Ls~eEk~~ll~~y~ 190 (236)
...+..++++|+-+..|+.|++.....+ +++.. ..+|.-=|.+..|-|- --.||++|+++||++=-
T Consensus 90 ~~~~a~~g~VVTn~~FT~~A~~~A~~~~--I~Li~wd~p~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~~~ 161 (199)
T 1y88_A 90 EKHGFTQPWIFTNTKFSEEAKKYAGCVG--IKLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRAGL 161 (199)
T ss_dssp GGGTCSEEEEECSSEECHHHHHHHHHHT--CEEECSSCSTTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHTTC
T ss_pred hccCCCEEEEEECCCCCHHHHHHHHHCC--cEEEECCCCchHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcCCc
Confidence 4457889999999999999998777655 44432 2444444555666662 12689999999987633
No 16
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=43.73 E-value=23 Score=25.34 Aligned_cols=35 Identities=11% Similarity=0.340 Sum_probs=23.5
Q ss_pred ccccCCchhhh---cCCCCCCEEEEEecCCCCcceeEEE
Q 026620 198 RMLKKDAIAQY---YGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 198 ~I~~~DPvary---~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
+|..++...++ +|+.||..|++++.++-.|. +.++
T Consensus 20 ~i~~~~~~~~rL~~mGl~pG~~V~V~~~~p~~gp-i~v~ 57 (86)
T 2k4y_A 20 GIVPESKVRRKIMDMGIVRGTEIYIEGKAPMGDP-IALR 57 (86)
T ss_dssp EECTTSSHHHHHHHHTCCTTCEEEEEEECTTSCS-EEEE
T ss_pred EEECCHHHHHHHHHCCCCCCCEEEEEEeCCCCCC-EEEE
Confidence 44443344444 49999999999999876654 4443
No 17
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=43.03 E-value=22 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=23.6
Q ss_pred cCCccccCCchhhhcCCCCCCEEEE--EecCCCCcceeEEEEe
Q 026620 195 QLPRMLKKDAIAQYYGLERGQVVKV--TYSGEITESHVTYRCV 235 (236)
Q Consensus 195 qLP~I~~~DPvary~g~~~GdVvkI--~R~s~tag~~v~YR~V 235 (236)
.--++.+-||- -.++.||+|.| .|| -.....+|++
T Consensus 37 r~kk~~aHDe~---n~~~~GD~V~I~e~RP---lSKtk~~~v~ 73 (80)
T 3r8n_Q 37 RTTKLHVHDEN---NECGIGDVVEIRECRP---LSKTKSWTLV 73 (80)
T ss_dssp ECCEEECBCGG---GCCCTTCEEEEEEEEE---EETTEEEEEE
T ss_pred ecceEEEECCC---CCCCCCCEEEEEEecc---CCCcEeEEEE
Confidence 34567889983 47999999999 444 1245556553
No 18
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=40.51 E-value=35 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=19.1
Q ss_pred cCCCCCCEEEEEecCCCCcceeEEE
Q 026620 209 YGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 209 ~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
+|+.||..|++.+.++-.+..+.++
T Consensus 34 lGl~pG~~v~V~~~~p~g~~pi~v~ 58 (85)
T 3mhx_A 34 LGFVKGEEVRMVAKGPVGGEPLLVQ 58 (85)
T ss_dssp TTCCTTCEEEEEESCSSSCSCEEEE
T ss_pred CCCCCCCEEEEEEeCCCCCCCEEEE
Confidence 4999999999999987652444444
No 19
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=40.50 E-value=16 Score=35.02 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=39.3
Q ss_pred CCCccchhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHhhhccceEeeee
Q 026620 105 GPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQ 157 (236)
Q Consensus 105 ~~~~vgvk~Ir~~~~~~~~~en~~~~IiV~q~~lt~~Ark~l~~~~~~IEiF~ 157 (236)
.+..||.+.|+.|+..| .+...||+|+-+..|..|.+.+..-+..|.++.
T Consensus 361 ~~~~Vg~~~I~~f~g~l---~~~~~GifITTS~Ft~~A~~ea~~d~~pI~LId 410 (456)
T 4f0q_A 361 PTSSVSPEQVARVVARL---RRGWIGVYVTTGSFSRQAQVEIIDDQYPVVLIA 410 (456)
T ss_dssp TTSEECHHHHHHHHTTC---CTTEEEEEEESSEECHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCCHHHHHHHHHhh---cCCCeEEEEECCcCCHHHHHHHHcCCCcEEEEc
Confidence 35679999999999887 456899999999999999887765444555543
No 20
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.62 E-value=22 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=21.6
Q ss_pred chhhhcCCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 204 AIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 204 Pvary~g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
.+++.+|+++||++...=.....---+.|+-|
T Consensus 32 eI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 32 DIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp HHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred HHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 68999999999999886552111123466544
No 21
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=34.80 E-value=35 Score=23.22 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.2
Q ss_pred cCCCCCCEEEEEecCCCCcc
Q 026620 209 YGLERGQVVKVTYSGEITES 228 (236)
Q Consensus 209 ~g~~~GdVvkI~R~s~tag~ 228 (236)
+|+.||..|++.+.++-.|.
T Consensus 30 lGl~~G~~v~v~~~~p~~~p 49 (75)
T 2h3j_A 30 MGLLPGAALRVVRIAPLGDP 49 (75)
T ss_dssp HTCCTTCEEEEEECCTTSCC
T ss_pred cCCCCCCEEEEEEECCCCCC
Confidence 59999999999999876654
No 22
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=34.66 E-value=32 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.6
Q ss_pred cCCCCCCEEEEEecCCCCcceeEEE
Q 026620 209 YGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 209 ~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
+|+.||..|++.+.++-.| .+.++
T Consensus 29 lGl~pG~~v~v~~~~p~~g-pi~v~ 52 (75)
T 2gcx_A 29 LGMLPGSSFHVVRVAPLGD-PVHIE 52 (75)
T ss_dssp TTCCSSEEEEECCCCSSCC-EEEEE
T ss_pred CCCCCCCEEEEEEeCCCCC-CEEEE
Confidence 5999999999999987654 34444
No 23
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=34.08 E-value=34 Score=24.15 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=23.1
Q ss_pred ccccCCchhhh---cCCCCCCEEEEEecCCCCcceeEEE
Q 026620 198 RMLKKDAIAQY---YGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 198 ~I~~~DPvary---~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
+|..++...++ +|+.||..|++++.++..|. +.++
T Consensus 17 ~i~~~~~~~~rL~~lGl~pG~~v~V~~~~p~~gp-i~v~ 54 (81)
T 2k5l_A 17 KLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDP-IQIN 54 (81)
T ss_dssp EECSSSHHHHHHHHHTCCTTCEEEEEEECTTSCC-EEEE
T ss_pred EEECCHHHHHHHHHCCCCCCCEEEEEEeCCCCCC-EEEE
Confidence 34443334444 49999999999999876554 4443
No 24
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=33.40 E-value=1.3e+02 Score=24.26 Aligned_cols=75 Identities=9% Similarity=0.156 Sum_probs=46.8
Q ss_pred chhhHHHHHHHHhhcCCCcEEEEEEcCCCCHHHHHHhhhccceEeeeeeceeeeecccccccCceeecChHHHHHHHhhh
Q 026620 110 KVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKY 189 (236)
Q Consensus 110 gvk~Ir~~~~~~~~~en~~~~IiV~q~~lt~~Ark~l~~~~~~IEiF~e~eLl~nit~H~lVPkH~~Ls~eEk~~ll~~y 189 (236)
+=.++...++.+ .+.+..+..+.+ .-..+.+.+.+.... .+-.|...+-.+.+-. .--..+.+|++|..++|++|
T Consensus 132 TG~Tl~~a~~~L-~~~ga~~V~v~~-~v~~~~~~~~l~~~~-~~v~~~~~~~f~~v~~--~y~~~~~~~~~ev~~~l~~~ 206 (208)
T 1wd5_A 132 TGASMEAALSVV-FQEGPRRVVVAV-PVASPEAVERLKARA-EVVALSVPQDFAAVGA--YYLDFGEVTDEDVEAILLEW 206 (208)
T ss_dssp SCHHHHHHHHHH-HTTCCSEEEEEE-EEBCHHHHHHHHTTS-EEEEEECCTTCCCGGG--GBSCCCCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEEE-EEcCHHHHHHhcccC-cEEEEecCcchhhHHH--HhcCCCCCCHHHHHHHHHHh
Confidence 337888888888 778877666555 223455666665444 4444443332233332 34567899999999999844
No 25
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=31.29 E-value=31 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=22.4
Q ss_pred CccccCCchhhhcCCCCCCEEEE--EecCCCCcceeEEEEe
Q 026620 197 PRMLKKDAIAQYYGLERGQVVKV--TYSGEITESHVTYRCV 235 (236)
Q Consensus 197 P~I~~~DPvary~g~~~GdVvkI--~R~s~tag~~v~YR~V 235 (236)
-++.+-||- .-++.||+|.| .|| -.....|+++
T Consensus 40 kk~~aHDe~---n~~k~GD~V~I~E~RP---lSKtKr~~vv 74 (105)
T 2vqe_Q 40 KKYLAHDPE---EKYKLGDVVEIIESRP---ISKRKRFRVL 74 (105)
T ss_dssp EEEEEECTT---CCCCTTCEEEEEEEEE---EETTEEEEEE
T ss_pred eEEEEECCC---CCCCCCCEEEEEEccc---CCCCEEEEEE
Confidence 356788887 36999999999 444 1245566554
No 26
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=28.83 E-value=26 Score=23.29 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=13.4
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
.|.+++||+|.|++..
T Consensus 24 ~Lsf~~Gd~i~v~~~~ 39 (67)
T 3rnj_A 24 LLSFKEGDLITLLVPE 39 (67)
T ss_dssp BCCBCTTCEEEECSSS
T ss_pred CccCCCCCEEEEeecc
Confidence 3889999999998653
No 27
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=28.32 E-value=39 Score=23.16 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.9
Q ss_pred hhcCCCCCCEEEEEecC
Q 026620 207 QYYGLERGQVVKVTYSG 223 (236)
Q Consensus 207 ry~g~~~GdVvkI~R~s 223 (236)
-.|.+++||+|.|+..+
T Consensus 33 ~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCBCTTCEEEEEECC
T ss_pred CccCCCCCCEEEEEEcC
Confidence 56889999999999884
No 28
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=27.63 E-value=19 Score=29.04 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=20.3
Q ss_pred ccccCCchhhhc-CCCCCCEEEEEecCC
Q 026620 198 RMLKKDAIAQYY-GLERGQVVKVTYSGE 224 (236)
Q Consensus 198 ~I~~~DPvary~-g~~~GdVvkI~R~s~ 224 (236)
+|+..-|+++.| |.+.||.|.+.-++.
T Consensus 119 ~IS~~SPlG~ALlGk~~GD~v~v~~p~G 146 (158)
T 1grj_A 119 LISVNSPIARGLIGKEEDDVVVIKTPGG 146 (158)
T ss_dssp EEESSSHHHHHHTTCBTTCEECC-----
T ss_pred EEcCCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 799999999865 999999999988764
No 29
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=27.54 E-value=41 Score=22.40 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.1
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
.|.+++||+|.|+...
T Consensus 26 eLsf~~Gd~i~v~~~~ 41 (70)
T 1gcq_C 26 FLRLNPGDIVELTKAE 41 (70)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred cCCcCCCCEEEEEeCC
Confidence 6789999999999883
No 30
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=27.47 E-value=43 Score=21.47 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.9
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|...+
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (60)
T 2v1q_A 18 ELTIKSGDKVYILDDK 33 (60)
T ss_dssp BCCBCTTCEEEEEESS
T ss_pred CccCCCCCEEEEEeCC
Confidence 4779999999999875
No 31
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=27.24 E-value=26 Score=24.59 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=14.4
Q ss_pred cccCCchhhhcCCCCCCEEEE
Q 026620 199 MLKKDAIAQYYGLERGQVVKV 219 (236)
Q Consensus 199 I~~~DPvary~g~~~GdVvkI 219 (236)
+...-|.++ |+++||+|-=
T Consensus 42 V~~~spA~~--gL~~GD~I~~ 60 (95)
T 1mfg_A 42 VQPEGPASK--LLQPGDKIIQ 60 (95)
T ss_dssp ECTTSTTTT--TCCTTCEEEE
T ss_pred ECCCCchhh--CCCCCCEEEE
Confidence 445667788 9999998743
No 32
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=26.95 E-value=2.8 Score=30.68 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHhhhcCCcccCCccccCCchhhhcCCCCCCEEEEEe
Q 026620 184 KLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTY 221 (236)
Q Consensus 184 ~ll~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~R 221 (236)
..+.+-+++++-||-|.. .+-|-+|++.||+|+|.|
T Consensus 24 ~~F~~~ri~e~mL~Dl~~--~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 24 INFDREQLTEDMMPDINN--SMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp HHHHHTTCCGGGGGGCCH--HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHccCCHHHHhhCCH--HHHHHcCCchhhHHHHHH
Confidence 445666788999998854 589999999999999865
No 33
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=26.71 E-value=47 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=14.5
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
.|.+++||+|.|+.+..
T Consensus 16 eLs~~~Gd~i~v~~~~~ 32 (54)
T 2a28_A 16 EISIDPGDIITVIRGDD 32 (54)
T ss_dssp BCCBCTTCEEEEEECCC
T ss_pred CccCCCCCEEEEEEecC
Confidence 47799999999998873
No 34
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.96 E-value=48 Score=23.87 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.7
Q ss_pred hhhcCCCCCCEEEEEecCCCCc
Q 026620 206 AQYYGLERGQVVKVTYSGEITE 227 (236)
Q Consensus 206 ary~g~~~GdVvkI~R~s~tag 227 (236)
..+||+..|+.|.|+-..+.+|
T Consensus 76 L~~y~i~~G~~I~V~d~~p~s~ 97 (97)
T 1wjn_A 76 LQFYSVENGDCLLVRWSGPSSG 97 (97)
T ss_dssp SGGGTCCTTCEEEEECCSSCCC
T ss_pred HhhcCCCCCCEEEEEecCCCCC
Confidence 4688999999999988777765
No 35
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=25.91 E-value=22 Score=28.87 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=36.5
Q ss_pred ceeecChHHHHHHHhhhcCCcc--cCCccccCCchhhhcCCCCCCEEEE
Q 026620 173 KHQVLTDQEKEKLLKKYSIEEK--QLPRMLKKDAIAQYYGLERGQVVKV 219 (236)
Q Consensus 173 kH~~Ls~eEk~~ll~~y~i~~~--qLP~I~~~DPvary~g~~~GdVvkI 219 (236)
.|...+.+...++|++.++.-+ ..|-....+-+|.++|..+++++|-
T Consensus 10 ~~~~~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~Kt 58 (180)
T 1vjf_A 10 HHHMKTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKN 58 (180)
T ss_dssp ---CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEE
T ss_pred hcccchHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeE
Confidence 5778899999999999998643 4566666677889999999999984
No 36
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=25.73 E-value=56 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=18.8
Q ss_pred cCCCCCCEEEEEecCCCCcceeEEE
Q 026620 209 YGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 209 ~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
+|+-||..|++++.++-.|. +.+|
T Consensus 29 mGl~pG~~V~Vi~~ap~ggP-i~v~ 52 (83)
T 2lx9_A 29 LGMLPGSSFNVVRVAPLGDP-IHIE 52 (83)
T ss_dssp SSCCSSSEEEEEEECTTTCC-EEEE
T ss_pred CCCCCCCEEEEEEeCCCCCc-EEEE
Confidence 59999999999999976553 4443
No 37
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=25.25 E-value=53 Score=28.19 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=25.5
Q ss_pred chhhhcCCCCCCEEEEEecCCCCcceeEEE
Q 026620 204 AIAQYYGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 204 Pvary~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
-+.+.||+++||+|+|.-.+-..|.++..+
T Consensus 99 wmm~~L~l~~gd~V~i~~~~LPkgt~vklq 128 (208)
T 1zc1_A 99 WMMETLGIQPGSLLQISSTDVPLGQFVKLE 128 (208)
T ss_dssp HHHHHHTCCTTCEEEEEEEECCCCSEEEEE
T ss_pred HHHHhcCCCCCCEEEEEEeEcCCCCEEEEe
Confidence 478889999999999998888888888654
No 38
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.17 E-value=1.1e+02 Score=23.54 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=31.2
Q ss_pred eecChHHHHHHHhhhcCCccc--CCccccCCch------hhhcCCCCCCEEEEEecCCC
Q 026620 175 QVLTDQEKEKLLKKYSIEEKQ--LPRMLKKDAI------AQYYGLERGQVVKVTYSGEI 225 (236)
Q Consensus 175 ~~Ls~eEk~~ll~~y~i~~~q--LP~I~~~DPv------ary~g~~~GdVvkI~R~s~t 225 (236)
...-+.|-+++-++|+++-.. |=...+.=+. ..-|.+++|+++.|++..+.
T Consensus 16 ~~~~ek~eke~rkKFk~~G~~~vl~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~ 74 (102)
T 1ri9_A 16 LKKQEKEEKDFRKKFKYDGEIRVLYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDD 74 (102)
T ss_dssp ----CHHHHHHHHHTCCCSCCCCSSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSS
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCC
Confidence 344455667799999986441 1111111122 46789999999999998874
No 39
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.94 E-value=62 Score=27.35 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=29.1
Q ss_pred cccCCchhhhcCCCCCCEEEEEecCCCCcceeEEE
Q 026620 199 MLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 199 I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
|.-...+.+.||+++||.|+|.-.+-..|.++..+
T Consensus 89 i~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklq 123 (190)
T 2yuj_A 89 CYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQ 123 (190)
T ss_dssp EECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEE
T ss_pred EEeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEE
Confidence 45555689999999999999998888888888754
No 40
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=24.74 E-value=30 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=14.1
Q ss_pred cccCCchhhhcCCCCCCEEEEE
Q 026620 199 MLKKDAIAQYYGLERGQVVKVT 220 (236)
Q Consensus 199 I~~~DPvary~g~~~GdVvkI~ 220 (236)
+...-|.++ |+++||+|-=+
T Consensus 8 V~~~spA~~--GL~~GD~I~~I 27 (91)
T 2kjp_A 8 VVENMPAKG--KIEVGDKIISA 27 (91)
T ss_dssp CCCSSCCSS--CCCSSCEEEEE
T ss_pred ECCCChHHH--cCCCCCEEEEE
Confidence 344557776 99999987644
No 41
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=24.68 E-value=47 Score=21.72 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=14.1
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|.+++
T Consensus 37 eLsf~~Gd~i~v~~~~ 52 (62)
T 1g2b_A 37 EVTMKKGDILTLLNST 52 (62)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEec
Confidence 4789999999999985
No 42
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.52 E-value=2.1e+02 Score=23.05 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCcccCccccccCHHHHHHHhCCCCCCCceEEEeecCCCCCCcEEEEecCCCccchhhHHHHHHHHhhcCC
Q 026620 47 RTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDT 126 (236)
Q Consensus 47 rTv~eMl~DRGY~v~~~el~~sl~eF~~~y~~~~~r~~L~~~~~~~~~p~~~I~VfF~~~~~vgvk~Ir~~~~~~~~~en 126 (236)
+-+..||+.+||.|..-....+.++|.+.-... +| +-|.+.+.. .-....++.+++.+ .+.+
T Consensus 106 ~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~--------------~~-d~v~lS~~~--~~~~~~~~~~i~~l-~~~~ 167 (210)
T 1y80_A 106 NLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY--------------QP-DIVGMSALL--TTTMMNMKSTIDAL-IAAG 167 (210)
T ss_dssp HHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH--------------CC-SEEEEECCS--GGGTHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--------------CC-CEEEEeccc--cccHHHHHHHHHHH-HhcC
Confidence 345678999999999877788899997654111 11 112222221 23567899999998 6666
Q ss_pred Cc--EEEEEEcCCCCH
Q 026620 127 LT--GLILILQNQITS 140 (236)
Q Consensus 127 ~~--~~IiV~q~~lt~ 140 (236)
.. --|+|-....++
T Consensus 168 ~~~~~~v~vGG~~~~~ 183 (210)
T 1y80_A 168 LRDRVKVIVGGAPLSQ 183 (210)
T ss_dssp CGGGCEEEEESTTCCH
T ss_pred CCCCCeEEEECCCCCH
Confidence 53 345554444554
No 43
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=24.51 E-value=47 Score=21.67 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=13.8
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|+.++
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKKL 32 (62)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CcCCcCCCEEEEEEec
Confidence 4789999999999873
No 44
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=24.35 E-value=34 Score=24.42 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=14.4
Q ss_pred ccccCCchhhhcCCCCCCEEE
Q 026620 198 RMLKKDAIAQYYGLERGQVVK 218 (236)
Q Consensus 198 ~I~~~DPvary~g~~~GdVvk 218 (236)
.+...-|.++ |+++||+|-
T Consensus 49 ~V~~~spA~~--gL~~GD~I~ 67 (103)
T 1n7t_A 49 RVQPEGPASK--LLQPGDKII 67 (103)
T ss_dssp CBSSSSTTSS--SCCTTCEEE
T ss_pred EECCCCchHH--CCCCCCEEE
Confidence 3455567888 999999874
No 45
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=24.09 E-value=46 Score=21.33 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=14.1
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|+..+
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (58)
T 2bz8_A 17 ELTISVGEIITNIRKE 32 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred EeeECCCCEEEEEEeC
Confidence 5789999999999875
No 46
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.91 E-value=47 Score=21.78 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=16.5
Q ss_pred chhhhcCCCCCCEEEEEecC
Q 026620 204 AIAQYYGLERGQVVKVTYSG 223 (236)
Q Consensus 204 Pvary~g~~~GdVvkI~R~s 223 (236)
.+.+.+|+++||.+.+.-..
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHcCcCCCCEEEEEEEC
Confidence 46788999999999997543
No 47
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=23.69 E-value=1.2e+02 Score=27.07 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=31.1
Q ss_pred ecChHHHHHHHhhhcCCcccCCccccCCchhhhcCCCCCCEEEEE----ecCCCCcceeEEEEeC
Q 026620 176 VLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVT----YSGEITESHVTYRCVW 236 (236)
Q Consensus 176 ~Ls~eEk~~ll~~y~i~~~qLP~I~~~DPvary~g~~~GdVvkI~----R~s~tag~~v~YR~V~ 236 (236)
-+.+||-+.-|.|+. +|+ |+ -+++.+++ |+| ||+++|++.|
T Consensus 178 ~~deE~l~~~l~k~~-----~P~-----------gl-N~~~f~l~ltnrRKS---GRsl~y~f~i 222 (270)
T 4a8j_B 178 TLDTEEVSELLNEFR-----IPR-----------GL-NNDIFQLRLVNKRKS---GRSLEYDFIV 222 (270)
T ss_dssp SCCHHHHHHHHHTTC-----CCS-----------SC-SCSEEEEEEEEECTT---SCEEEEEEEE
T ss_pred CccHHHHHHHhhhee-----ccc-----------cc-CCCeEEEEEEecccc---CcceEEEEEE
Confidence 567888898888877 566 66 67777774 555 9999999864
No 48
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=23.63 E-value=47 Score=21.13 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=14.2
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
-+.+++||+|.|...+.
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (57)
T 1cka_A 17 DLPFKKGDILRIRDKPE 33 (57)
T ss_dssp BCCBCTTCEEEEEECSS
T ss_pred CCCCCCCCEEEEEEecC
Confidence 47799999999998753
No 49
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=23.58 E-value=48 Score=21.14 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=14.7
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
-+.+++||+|.|.....
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 17 EITITPGDKISLVARDT 33 (58)
T ss_dssp BCCBCTTCCEEEEECCS
T ss_pred cccCCCCCEEEEeEcCC
Confidence 57899999999998775
No 50
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=23.38 E-value=44 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=35.3
Q ss_pred ceeecChHHHHHHHhhhcCCcc--cCCccccCCchhhhcCCCCCCEEEE
Q 026620 173 KHQVLTDQEKEKLLKKYSIEEK--QLPRMLKKDAIAQYYGLERGQVVKV 219 (236)
Q Consensus 173 kH~~Ls~eEk~~ll~~y~i~~~--qLP~I~~~DPvary~g~~~GdVvkI 219 (236)
+-.-.+.+...++|++.++.-+ ..|-....+-+|.++|..+++++|-
T Consensus 15 ~~~~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~Kt 63 (181)
T 1vki_A 15 ENSRKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKN 63 (181)
T ss_dssp --CCCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEE
T ss_pred cccchHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEE
Confidence 3344567788999999998643 4566666677889999999999985
No 51
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=23.31 E-value=55 Score=21.75 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=13.9
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|...+
T Consensus 22 eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 22 ELTIKSGDKVYILDDK 37 (71)
T ss_dssp BCCBCTTCEEEEEESS
T ss_pred cccCCCCCEEEEEECC
Confidence 4789999999999875
No 52
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=23.10 E-value=1.3e+02 Score=21.22 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHhhhcCCcccC-----CccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 182 KEKLLKKYSIEEKQL-----PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 182 k~~ll~~y~i~~~qL-----P~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
|+++-++.++.+.+. .+++.+|--...||++.|+.|.+.-+. ..|.-+.+|.|
T Consensus 27 K~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~-~gG~~i~~~~v 84 (98)
T 1yx5_B 27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL-RGGRDPNSSSV 84 (98)
T ss_dssp HHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC-CCC--------
T ss_pred HHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC-CCCCcCccccC
Confidence 444445555544332 445555656677899999999987654 34556666544
No 53
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=22.87 E-value=34 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=14.0
Q ss_pred cccCCchhhhcCCCCCCEEEEE
Q 026620 199 MLKKDAIAQYYGLERGQVVKVT 220 (236)
Q Consensus 199 I~~~DPvary~g~~~GdVvkI~ 220 (236)
+...-|.++ |+++||+|-=+
T Consensus 12 V~~~spA~~--GL~~GD~Il~I 31 (94)
T 2kl1_A 12 VLPNMPAAG--RLEAGDRIAAI 31 (94)
T ss_dssp CCTTSTTBT--TBCTTCEEEEE
T ss_pred ECCCChHHh--CCCCCCEEEEE
Confidence 344557766 99999987644
No 54
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=22.85 E-value=51 Score=21.11 Aligned_cols=16 Identities=0% Similarity=-0.294 Sum_probs=13.9
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
.|.+++||+|.|+...
T Consensus 16 eLs~~~Gd~i~v~~~~ 31 (58)
T 1jo8_A 16 ELTFVENDKIINIEFV 31 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcccCCCCEEEEEEec
Confidence 5789999999999874
No 55
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=22.63 E-value=80 Score=23.55 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 196 LPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 196 LP~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
--++.+-||-. -++.||+|.|.-- ..-.....+|++
T Consensus 38 ~kk~~aHDe~n---~~k~GD~V~I~E~-RPlSKtK~~~vv 73 (89)
T 1qd7_I 38 SKKYKAHDEHN---EAKVGDIVKIMET-RPLSATKRFRLV 73 (89)
T ss_pred cEEEEEeCCcc---CCCCCCEEEEEEc-ccCCCCEEEEEE
Confidence 34677888877 5899999999533 222355666654
No 56
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=22.59 E-value=38 Score=22.65 Aligned_cols=16 Identities=44% Similarity=0.480 Sum_probs=14.3
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
.|.+++||+|.|+..+
T Consensus 24 eLs~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 24 ALALEVGELVKVTKIN 39 (67)
T ss_dssp BCCBCSSEEEEEEEEC
T ss_pred ccccCCCCEEEEEEec
Confidence 6889999999999875
No 57
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=22.58 E-value=47 Score=21.12 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
.|.+++||+|.|...+.
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuy_A 17 ELPLKKGDVIYITREEP 33 (58)
T ss_dssp BCCBCTTCEEEEEEECT
T ss_pred cCCCCCCCEEEEEEecC
Confidence 47899999999998763
No 58
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=22.24 E-value=45 Score=23.89 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=13.5
Q ss_pred cccCCchhhhcCCCCCCEEEEE
Q 026620 199 MLKKDAIAQYYGLERGQVVKVT 220 (236)
Q Consensus 199 I~~~DPvary~g~~~GdVvkI~ 220 (236)
+...-|.+ . |+++||+|-=+
T Consensus 14 V~~~spA~-~-GL~~GD~I~~I 33 (100)
T 3i18_A 14 VKDDVPAA-D-VLHAGDLITEI 33 (100)
T ss_dssp ECTTSGGG-G-TCCTTCEEEEE
T ss_pred eCCCCchH-H-CCCCCCEEEEE
Confidence 33455776 4 99999987533
No 59
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=22.07 E-value=57 Score=21.01 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=13.7
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|+.+.
T Consensus 21 eLs~~~Gd~i~v~~~~ 36 (63)
T 3eg3_A 21 TLSITKGEKLRVLGYN 36 (63)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC
Confidence 4789999999999854
No 60
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.86 E-value=58 Score=25.44 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=23.2
Q ss_pred CccccCCchhhhcCCCCCCEEEEEecCCCCcceeEEEEe
Q 026620 197 PRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCV 235 (236)
Q Consensus 197 P~I~~~DPvary~g~~~GdVvkI~R~s~tag~~v~YR~V 235 (236)
-++.+-||-.- .++.||+|.|.-- .---....+|++
T Consensus 68 kk~~aHDe~~n--~~~vGD~V~I~E~-RPlSKtKr~~vv 103 (113)
T 3j20_R 68 SKIHAHNPPCI--NAKVGDKVLIAET-RPLSKTKHFVVV 103 (113)
T ss_dssp EEEEEECCTTS--CCCTTSEEEEEEC-SCSSSSEEEEEE
T ss_pred eEEEEECCCCC--CCCCCCEEEEEec-ccCCCcEeEEEE
Confidence 35677888433 5899999999532 222256666664
No 61
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=21.57 E-value=48 Score=21.27 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=13.7
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|...+
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (60)
T 2x3w_D 19 ELSFKAGDELTKLGEE 34 (60)
T ss_dssp BCCBCTTCEEEECSCC
T ss_pred cccCCCCCEEEEEEcc
Confidence 5789999999998764
No 62
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=21.33 E-value=56 Score=20.78 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.0
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|...+
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 18 ELAFKRGDVITLINKD 33 (58)
T ss_dssp BCCBCTTCEEEEEECS
T ss_pred CcCCCCCCEEEEEEec
Confidence 5789999999999875
No 63
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=21.22 E-value=49 Score=20.95 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=14.1
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|+.++
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (58)
T 4e6r_A 17 ELSLVXGSRVTVMEXC 32 (58)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred EeeEeCCCEEEEeEcC
Confidence 3789999999999876
No 64
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=20.89 E-value=37 Score=22.97 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=14.3
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
.|.+++||+|.|+.++.
T Consensus 20 ~Ls~~~Gd~i~v~~~~~ 36 (60)
T 2lx7_A 20 GLRFAAGELITLLQVPD 36 (60)
T ss_dssp CCCCCTTCEEEBSCCCT
T ss_pred CccCCCCCEEEEeEecC
Confidence 38999999999987653
No 65
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=20.70 E-value=57 Score=21.73 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=14.2
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
.|.+++||+|.|+..+.
T Consensus 19 eLsf~~Gd~i~v~~~~~ 35 (65)
T 1b07_A 19 DLPFKKGDILRIRDKPE 35 (65)
T ss_dssp BCCBCTTCEEEEEECSS
T ss_pred ccCCcCCCEEEEEEecC
Confidence 46789999999998753
No 66
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=20.67 E-value=44 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=18.9
Q ss_pred cccCCchhhhcCCCCCC-EEEEEec
Q 026620 199 MLKKDAIAQYYGLERGQ-VVKVTYS 222 (236)
Q Consensus 199 I~~~DPvary~g~~~Gd-VvkI~R~ 222 (236)
+..++-+|+.||+.+|+ |++|.|-
T Consensus 19 ~~a~~~ia~~L~l~~~~~v~~i~Rl 43 (152)
T 2ogg_A 19 EPPSELIQKQLRANLDDDIWEVIRS 43 (152)
T ss_dssp ECCCHHHHHHHTCCTTCCEEEEEEE
T ss_pred EcCCHHHHHhcCCCCCCeEEEEEEE
Confidence 44566789999999996 8888774
No 67
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=20.58 E-value=56 Score=22.29 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=14.6
Q ss_pred hhcCCCCCCEEEEEecC
Q 026620 207 QYYGLERGQVVKVTYSG 223 (236)
Q Consensus 207 ry~g~~~GdVvkI~R~s 223 (236)
..|.+++||+|.|+...
T Consensus 26 ~eLs~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 26 DSLKLKKGDIIDIISKP 42 (73)
T ss_dssp SBCCBCSSCEEEEEECC
T ss_pred CccCCCCCCEEEEEEeC
Confidence 36789999999999875
No 68
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=20.53 E-value=54 Score=21.06 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=14.6
Q ss_pred hhcCCCCCCEEEEEecCC
Q 026620 207 QYYGLERGQVVKVTYSGE 224 (236)
Q Consensus 207 ry~g~~~GdVvkI~R~s~ 224 (236)
.-|.+++||+|.|+..+.
T Consensus 19 ~eLs~~~Gd~i~v~~~~~ 36 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRVEE 36 (59)
T ss_dssp TBCCBCTTCEEEEEEECT
T ss_pred CCcCCCCCCEEEEEEecC
Confidence 357899999999998653
No 69
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=20.50 E-value=60 Score=21.37 Aligned_cols=17 Identities=12% Similarity=0.304 Sum_probs=14.0
Q ss_pred hcCCCCCCEEEEEecCC
Q 026620 208 YYGLERGQVVKVTYSGE 224 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~ 224 (236)
-|.+++||+|.|...+.
T Consensus 5 eLs~~~Gd~i~v~~~~~ 21 (63)
T 1tuc_A 5 EVTMKKGDILTLLNSTN 21 (63)
T ss_dssp CCCBCTTCEEEEEECCS
T ss_pred ccCCCCCCEEEEEEecC
Confidence 36789999999998763
No 70
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=20.46 E-value=54 Score=21.29 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=13.5
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|....
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 19 ELELEVDDPLLVELQA 34 (62)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cCcCCCCCEEEEEEec
Confidence 4789999999998765
No 71
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=20.37 E-value=62 Score=20.57 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.9
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|....
T Consensus 18 eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 18 ELGFRRGDFIHVMDNS 33 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred CcCCCCCCEEEEEEcC
Confidence 5789999999999875
No 72
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.26 E-value=79 Score=23.67 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=19.2
Q ss_pred hcCCCCCCEEEEEecCCCCcceeEEE
Q 026620 208 YYGLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
-+|+.||..|+|++.++..|. +.++
T Consensus 29 ~lGl~pG~~V~Vv~~~P~ggp-i~V~ 53 (105)
T 2k5f_A 29 DLGLVRGAKLKVLRFAPLGDP-IEVN 53 (105)
T ss_dssp HHTCSTTCEEEEEEECSSSCS-EEEE
T ss_pred HcCCCCCCEEEEEEECCCCCC-EEEE
Confidence 359999999999999876654 4443
No 73
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.04 E-value=79 Score=21.40 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=14.2
Q ss_pred hcCCCCCCEEEEEecC
Q 026620 208 YYGLERGQVVKVTYSG 223 (236)
Q Consensus 208 y~g~~~GdVvkI~R~s 223 (236)
-|.+++||+|.|...+
T Consensus 26 eLs~~~Gd~i~v~~~~ 41 (77)
T 2enm_A 26 ELTVTEGEIITVTNPN 41 (77)
T ss_dssp BCCCCTTCEEEEEESC
T ss_pred eecCCCCCEEEEeEcc
Confidence 5789999999999875
No 74
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=20.03 E-value=63 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=19.4
Q ss_pred chhhhc---CCCCCCEEEEEecCCCCcceeEEE
Q 026620 204 AIAQYY---GLERGQVVKVTYSGEITESHVTYR 233 (236)
Q Consensus 204 Pvary~---g~~~GdVvkI~R~s~tag~~v~YR 233 (236)
.+.++| |+.||..|+|.++. |..+.++
T Consensus 179 ~~~~~L~~~Gi~pG~~v~v~~~~---~~~~~v~ 208 (230)
T 1fx7_A 179 DLITRLKDAGVVPNARVTVETTP---GGGVTIV 208 (230)
T ss_dssp HHHHHHHHTTCCTTCEEEEEECT---TSCEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEEEcC---CCeEEEE
Confidence 445565 99999999999874 4445544
Done!