Query 026621
Match_columns 236
No_of_seqs 225 out of 1358
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 3.5E-29 7.7E-34 190.5 16.8 129 102-232 2-133 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 100.0 2.4E-28 5.2E-33 185.2 15.3 124 104-230 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 99.9 4.5E-27 9.8E-32 179.3 14.2 129 100-233 2-138 (139)
4 cd03773 MATH_TRIM37 Tripartite 99.9 4.5E-26 9.8E-31 172.3 13.3 124 100-230 2-130 (132)
5 cd00270 MATH_TRAF_C Tumor Necr 99.9 3E-25 6.6E-30 171.1 12.0 126 103-230 1-149 (149)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.9E-24 4E-29 165.7 13.0 127 103-229 1-147 (148)
7 cd00121 MATH MATH (meprin and 99.9 1.1E-23 2.5E-28 156.3 15.5 125 103-230 1-126 (126)
8 cd03779 MATH_TRAF1 Tumor Necro 99.9 5.3E-24 1.1E-28 162.5 13.2 127 103-229 1-146 (147)
9 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.5E-24 3.3E-29 166.9 10.3 126 103-230 1-147 (147)
10 cd03781 MATH_TRAF4 Tumor Necro 99.9 5.8E-24 1.3E-28 164.7 13.6 126 103-230 1-154 (154)
11 cd03778 MATH_TRAF2 Tumor Necro 99.9 9.2E-24 2E-28 163.0 13.3 130 99-229 15-163 (164)
12 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.5E-23 3.4E-28 166.1 14.3 130 99-230 35-184 (186)
13 cd03771 MATH_Meprin Meprin fam 99.9 1.3E-23 2.9E-28 163.2 12.3 126 102-230 1-167 (167)
14 PF00917 MATH: MATH domain; I 99.9 7.6E-23 1.7E-27 151.2 9.4 115 109-231 1-119 (119)
15 smart00061 MATH meprin and TRA 99.8 2.3E-18 5.1E-23 121.9 11.1 93 105-205 2-95 (95)
16 cd03783 MATH_Meprin_Alpha Mepr 99.7 9.7E-18 2.1E-22 129.1 10.1 127 102-230 1-167 (167)
17 cd03782 MATH_Meprin_Beta Mepri 99.7 2.3E-17 5.1E-22 126.4 10.5 126 102-230 1-167 (167)
18 COG5077 Ubiquitin carboxyl-ter 99.6 4.6E-15 1E-19 134.8 7.4 132 99-234 35-173 (1089)
19 cd03772 MATH_HAUSP Herpesvirus 99.5 1.2E-13 2.6E-18 104.9 9.3 73 7-82 61-133 (137)
20 cd03775 MATH_Ubp21p Ubiquitin- 99.5 1.5E-13 3.2E-18 104.1 7.8 71 7-80 60-134 (134)
21 cd03774 MATH_SPOP Speckle-type 99.2 7.3E-11 1.6E-15 89.8 6.7 69 10-81 68-136 (139)
22 PF00917 MATH: MATH domain; I 99.0 8E-10 1.7E-14 81.1 6.3 66 9-81 54-119 (119)
23 cd03773 MATH_TRIM37 Tripartite 98.8 5.6E-09 1.2E-13 78.6 5.7 65 10-80 64-130 (132)
24 cd00270 MATH_TRAF_C Tumor Necr 98.8 9.9E-09 2.1E-13 78.9 6.3 70 8-79 70-148 (149)
25 cd00121 MATH MATH (meprin and 98.8 1.3E-08 2.8E-13 74.9 6.5 67 8-80 59-126 (126)
26 KOG1987 Speckle-type POZ prote 98.8 6.1E-10 1.3E-14 95.1 -0.8 218 10-233 54-295 (297)
27 KOG1987 Speckle-type POZ prote 98.8 1.1E-07 2.5E-12 81.1 12.2 119 105-234 6-128 (297)
28 COG5077 Ubiquitin carboxyl-ter 98.7 9.1E-09 2E-13 94.5 2.7 71 10-83 99-173 (1089)
29 cd03779 MATH_TRAF1 Tumor Necro 98.6 1.3E-07 2.8E-12 72.4 6.6 70 9-79 71-146 (147)
30 cd03776 MATH_TRAF6 Tumor Necro 98.5 7.4E-08 1.6E-12 73.9 4.1 71 8-80 70-147 (147)
31 cd03780 MATH_TRAF5 Tumor Necro 98.5 2.7E-07 5.9E-12 70.8 6.2 71 9-79 71-147 (148)
32 KOG1863 Ubiquitin carboxyl-ter 98.4 2E-07 4.3E-12 92.1 5.3 130 100-234 24-154 (1093)
33 cd03781 MATH_TRAF4 Tumor Necro 98.4 8.6E-07 1.9E-11 68.6 5.9 69 9-79 71-153 (154)
34 cd03778 MATH_TRAF2 Tumor Necro 98.3 1.2E-06 2.5E-11 68.1 6.0 69 9-79 89-163 (164)
35 cd03777 MATH_TRAF3 Tumor Necro 98.1 5.4E-06 1.2E-10 66.0 6.0 70 9-80 109-184 (186)
36 cd03771 MATH_Meprin Meprin fam 97.9 3.7E-05 8E-10 60.1 6.8 71 7-79 66-166 (167)
37 smart00061 MATH meprin and TRA 97.7 0.00011 2.4E-09 51.1 5.9 43 7-55 53-95 (95)
38 KOG1863 Ubiquitin carboxyl-ter 97.1 0.00022 4.8E-09 71.0 1.4 70 9-81 82-151 (1093)
39 cd03783 MATH_Meprin_Alpha Mepr 96.8 0.0014 3E-08 51.0 3.7 69 9-79 70-166 (167)
40 KOG0297 TNF receptor-associate 96.5 0.002 4.4E-08 57.3 3.1 80 99-178 276-365 (391)
41 cd03782 MATH_Meprin_Beta Mepri 96.3 0.0068 1.5E-07 47.0 4.4 69 9-79 68-166 (167)
42 PF08922 DUF1905: Domain of un 21.3 1.5E+02 0.0032 19.9 3.3 16 126-141 38-53 (80)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.97 E-value=3.5e-29 Score=190.50 Aligned_cols=129 Identities=22% Similarity=0.309 Sum_probs=109.9
Q ss_pred CCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCC--CCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 026621 102 NYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGV--GRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179 (236)
Q Consensus 102 ~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~--~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~ 179 (236)
.++++|+|+|||.+ ++.++|++|.+||++|+|++||+|... +..++||+||.|.+.. ....|++.|+|+|+|+||.
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 46899999999999 678999999999999999999999654 2358999999997643 3348999999999999998
Q ss_pred CC-cceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEE
Q 026621 180 LS-KHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI 232 (236)
Q Consensus 180 ~~-~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~ 232 (236)
++ .+......+.|+.....|||++||+|++|+++++|||+||+|+|||+|+|=
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 53 344445557897666799999999999998777899999999999999874
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.96 E-value=2.4e-28 Score=185.23 Aligned_cols=124 Identities=26% Similarity=0.481 Sum_probs=106.7
Q ss_pred eEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCC----CCCCCeEEEEEEEEEEeCC
Q 026621 104 KHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLST----ITRDSKIYVHFTLRIRDQV 179 (236)
Q Consensus 104 ~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~----~~~~w~~~~~f~l~l~n~~ 179 (236)
+|+|+|.|||.+ ++.+.|++|.+||++|+|.+||+|+.. .+|+|+||.+.+.+. .+.+|+++|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 599999999997 478999999999999999999999865 589999999976543 2568999999999999997
Q ss_pred CCc-ceeeeceeeecCCCCCCchhccccccccccC----CCCceECCEEEEEEEEE
Q 026621 180 LSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKA----ENGFLMNDVCIVEAEVL 230 (236)
Q Consensus 180 ~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~----~~gyl~~D~l~ie~~v~ 230 (236)
++. +......++|+....+|||.+||++++|++| +.|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 653 3444557899877789999999999999965 57999999999999874
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.95 E-value=4.5e-27 Score=179.34 Aligned_cols=129 Identities=24% Similarity=0.477 Sum_probs=107.6
Q ss_pred CCCCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEE
Q 026621 100 ASNYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTL 173 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l 173 (236)
+...+|+|+|+|||.+. ++.+.|++|.+||+ +|+|++||+|...+..+|+|+||++.+.+ .++++|+|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~ 77 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF 77 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEE
Confidence 34568999999999874 67899999999984 99999999998765678999999997532 4579999999
Q ss_pred EEEeCCCCcce--eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621 174 RIRDQVLSKHN--EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233 (236)
Q Consensus 174 ~l~n~~~~~~~--~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~ 233 (236)
.|+||.+.... .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 78 ~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 78 SILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 99999876432 2223466754 57899999999999987778999999999999999986
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.94 E-value=4.5e-26 Score=172.25 Aligned_cols=124 Identities=25% Similarity=0.460 Sum_probs=104.3
Q ss_pred CCCCeEEEEEccccccc--CceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 026621 100 ASNYKHVWKIENFSKLE--AKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRD 177 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~--~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n 177 (236)
+...+++|+|.|||.+. ++.+.|++|.+||++|+|++||+|...+.++|||+||.+.+. ..|.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 45678999999999985 578999999999999999999999876667899999998763 246788999999999
Q ss_pred CCC-CcceeeeceeeecCCCCCCchhccccccccccCCCCceEC--CEEEEEEEEE
Q 026621 178 QVL-SKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMN--DVCIVEAEVL 230 (236)
Q Consensus 178 ~~~-~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~--D~l~ie~~v~ 230 (236)
|.+ ..+......+.|.. ..+|||.+|+++++|++ +|||+| |+|+|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 953 34555555677865 46799999999999986 699999 9999999985
No 5
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.93 E-value=3e-25 Score=171.15 Aligned_cols=126 Identities=24% Similarity=0.410 Sum_probs=102.6
Q ss_pred CeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEEEEE
Q 026621 103 YKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYVHFT 172 (236)
Q Consensus 103 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~~f~ 172 (236)
++|+|+|.|||.++ ++.++|++|.+| |++|+|++||+|...+.++|||+||++.+++.. ...|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 47999999999974 358999999999 999999999999876567899999999876542 46799999999
Q ss_pred EEEEeCCCC---cceeee-----ceeeec-----CCCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621 173 LRIRDQVLS---KHNEKK-----ASTWLS-----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL 230 (236)
Q Consensus 173 l~l~n~~~~---~~~~~~-----~~~~F~-----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~ 230 (236)
|.|+||.++ .+.... ....|. ....+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 232221 123453 1357899999999999986 4899999999999983
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.92 E-value=1.9e-24 Score=165.66 Aligned_cols=127 Identities=23% Similarity=0.321 Sum_probs=104.3
Q ss_pred CeEEEEEccccccc-----Cc--eeecccE--EeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEEEEE
Q 026621 103 YKHVWKIENFSKLE-----AK--LYESEVF--VAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYVHFT 172 (236)
Q Consensus 103 ~~~~w~I~nfs~l~-----~~--~~~S~~f--~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~~f~ 172 (236)
+.+.|+|.|||.++ ++ .+.|++| .++||+|+|++||+|.+.+.++|+|+||++++++.+ -..|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 57899999999975 34 7999999 899999999999999987778899999999976543 35799999999
Q ss_pred EEEEeCCCCc-ce--eee---ceeeecCC----CCCCchhccccccccccCCCCceECCEEEEEEEE
Q 026621 173 LRIRDQVLSK-HN--EKK---ASTWLSTS----SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229 (236)
Q Consensus 173 l~l~n~~~~~-~~--~~~---~~~~F~~~----~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v 229 (236)
|.|++|.+.. ++ +.. ....|... +..||+++||++++|+..+.+||.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999997542 21 111 13557543 4579999999999998744699999999999987
No 7
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.92 E-value=1.1e-23 Score=156.33 Aligned_cols=125 Identities=31% Similarity=0.546 Sum_probs=105.0
Q ss_pred CeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCc
Q 026621 103 YKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSK 182 (236)
Q Consensus 103 ~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~ 182 (236)
++++|+|.+|+...++.++|+.|.++|++|+|.+||+|... ..++|||||+|.+.......|++.++|+|+|+++.+.+
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 36899999999966788999999999999999999999765 46799999999876544467999999999999998555
Q ss_pred ceeeeceeeec-CCCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621 183 HNEKKASTWLS-TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL 230 (236)
Q Consensus 183 ~~~~~~~~~F~-~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~ 230 (236)
+........|. ....+|||.+||++++|+++ ++++||+|+|+|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 55555555553 45689999999999999973 349999999999984
No 8
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.91 E-value=5.3e-24 Score=162.53 Aligned_cols=127 Identities=20% Similarity=0.307 Sum_probs=102.2
Q ss_pred CeEEEEEccccccc-----C--ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCeEEEEEE
Q 026621 103 YKHVWKIENFSKLE-----A--KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIYVHFT 172 (236)
Q Consensus 103 ~~~~w~I~nfs~l~-----~--~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~~~~~f~ 172 (236)
+.+.|+|+||+.+. + ..++||.|..+ ||+|+|++||+|.+.+.++|+|+||++.+++. ....|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 57899999999753 2 36999999864 99999999999998777889999999997643 234799999999
Q ss_pred EEEEeCCCCcce--eeec---eeeec----CCCCCCchhccccccccccCCCCceECCEEEEEEEE
Q 026621 173 LRIRDQVLSKHN--EKKA---STWLS----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229 (236)
Q Consensus 173 l~l~n~~~~~~~--~~~~---~~~F~----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v 229 (236)
|.|++|.+..+. .... .+.|. ..+..||+++||++++|+....+||.||+++|+|+|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 999999865432 1111 24586 334579999999999998633489999999999987
No 9
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.91 E-value=1.5e-24 Score=166.89 Aligned_cols=126 Identities=22% Similarity=0.271 Sum_probs=101.0
Q ss_pred CeEEEEEccccccc-----Cc--eeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCeEEEEEE
Q 026621 103 YKHVWKIENFSKLE-----AK--LYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIYVHFT 172 (236)
Q Consensus 103 ~~~~w~I~nfs~l~-----~~--~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~~~~~f~ 172 (236)
+.|+|+|.|||.++ ++ .+.|++|.+ |||+|+|++||+|...+..+|||+||++.+++. ...+|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 57999999999754 33 488999985 799999999999988766789999999987653 245799999999
Q ss_pred EEEEeCCCCc-ceee-----eceeeecC-----CCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621 173 LRIRDQVLSK-HNEK-----KASTWLST-----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL 230 (236)
Q Consensus 173 l~l~n~~~~~-~~~~-----~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~ 230 (236)
|.|++|.++. ++.. .....|.. .+.+|||.+||++++|+. .+||+||+++|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998632 2211 11245652 246799999999999987 5899999999999984
No 10
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.91 E-value=5.8e-24 Score=164.73 Aligned_cols=126 Identities=21% Similarity=0.327 Sum_probs=102.1
Q ss_pred CeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEEEEEE
Q 026621 103 YKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIYVHFT 172 (236)
Q Consensus 103 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~~~f~ 172 (236)
+.|.|+|.|||.++ ++.+.|++|.+| ||+|+|++||+|...+..+|+|+||++.+++..+ ..|+++++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57999999999864 257999999999 9999999999998877778999999999865433 4899999999
Q ss_pred EEEEeCCCC--c---ceeee-----ceeeecC--------CCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621 173 LRIRDQVLS--K---HNEKK-----ASTWLST--------SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL 230 (236)
Q Consensus 173 l~l~n~~~~--~---~~~~~-----~~~~F~~--------~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~ 230 (236)
|+|++|.++ . ++... ....|.. .+.+||+.+||++++|+. .+||+||+++|+|.|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999864 1 22111 1233442 345799999999999986 6899999999999873
No 11
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.91 E-value=9.2e-24 Score=162.99 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=108.1
Q ss_pred cCCCCeEEEEEccccccc-----C--ceeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEE
Q 026621 99 SASNYKHVWKIENFSKLE-----A--KLYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~-----~--~~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~ 168 (236)
....+.++|+|.||+.+. + ..++||+|.. +|++|+|++||+|++.+++.|||||+++.+++.++ ..|++.
T Consensus 15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCcee
Confidence 455799999999999874 2 3689999974 58999999999999888889999999999998765 799999
Q ss_pred EEEEEEEEeCCCCcceeeece-----eeec----CCCCCCchhccccccccccCCCCceECCEEEEEEEE
Q 026621 169 VHFTLRIRDQVLSKHNEKKAS-----TWLS----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229 (236)
Q Consensus 169 ~~f~l~l~n~~~~~~~~~~~~-----~~F~----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v 229 (236)
.+++|.|+||.++.|+..... ..|. ..+.+|||++|+++++|..+ .|||+||+|.|+|.|
T Consensus 95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 999999999987666543321 1242 23457999999999999864 599999999999987
No 12
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.91 E-value=1.5e-23 Score=166.11 Aligned_cols=130 Identities=22% Similarity=0.344 Sum_probs=105.9
Q ss_pred cCCCCeEEEEEccccccc-----Cc--eeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621 99 SASNYKHVWKIENFSKLE-----AK--LYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~ 168 (236)
....+.|.|+|.|||..+ ++ .+.|++|.+| ||+|+|++||+|.+.++++|+|+||++.+++.. ...|++.
T Consensus 35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCcee
Confidence 455799999999999874 34 7999999999 999999999999987778899999999986532 3479999
Q ss_pred EEEEEEEEeCCCC-ccee-----eeceeeec-CC---CCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621 169 VHFTLRIRDQVLS-KHNE-----KKASTWLS-TS---SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL 230 (236)
Q Consensus 169 ~~f~l~l~n~~~~-~~~~-----~~~~~~F~-~~---~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~ 230 (236)
++++|.|++|.+. .++. ......|. .. +.+||+++||++++|+. .+||.||+++|+|.|.
T Consensus 115 ~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 9999999999752 1211 11124575 22 45799999999999987 6899999999999886
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.91 E-value=1.3e-23 Score=163.18 Aligned_cols=126 Identities=22% Similarity=0.354 Sum_probs=99.5
Q ss_pred CCeEEEEEccccccc-----CceeecccE-EeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCe-EEEEEEE
Q 026621 102 NYKHVWKIENFSKLE-----AKLYESEVF-VAGNQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSK-IYVHFTL 173 (236)
Q Consensus 102 ~~~~~w~I~nfs~l~-----~~~~~S~~f-~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~-~~~~f~l 173 (236)
+.+|+|+|.|||.++ ++.++|++| .+|||+|+|++||+|... .++|+||||++.+++. ...+|+ +.++++|
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence 467999999999984 357999998 899999999999999887 6789999999987654 356799 5899999
Q ss_pred EEEeCCCC----cceee----e----c----eeeec----------C-------CCCCCchhccccccccccCCCCceEC
Q 026621 174 RIRDQVLS----KHNEK----K----A----STWLS----------T-------SSEDWGWSTFVELSYFNKAENGFLMN 220 (236)
Q Consensus 174 ~l~n~~~~----~~~~~----~----~----~~~F~----------~-------~~~~~G~~~Fi~~~~L~~~~~gyl~~ 220 (236)
+|++|... .+... . . ...|. . .+.+|||++||++++|+. .+||+|
T Consensus 80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~ 157 (167)
T cd03771 80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG 157 (167)
T ss_pred EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence 99999731 12211 0 0 00121 1 234899999999999997 569999
Q ss_pred CEEEEEEEEE
Q 026621 221 DVCIVEAEVL 230 (236)
Q Consensus 221 D~l~ie~~v~ 230 (236)
|+|.|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999874
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.89 E-value=7.6e-23 Score=151.16 Aligned_cols=115 Identities=33% Similarity=0.568 Sum_probs=95.7
Q ss_pred Eccccccc-C-ceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCccee
Q 026621 109 IENFSKLE-A-KLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIYVHFTLRIRDQVLSKHNE 185 (236)
Q Consensus 109 I~nfs~l~-~-~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~~~f~l~l~n~~~~~~~~ 185 (236)
|+|||.++ + ..+.|+.|.++|++|+|.+||+|+ +++|++||+|...+... ..|++.++++++|+++.++.. .
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~ 75 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI-S 75 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE-E
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc-e
Confidence 78999997 3 344558888999999999999986 47999999999876543 689999999999999998763 2
Q ss_pred eec-eeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEE
Q 026621 186 KKA-STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLR 231 (236)
Q Consensus 186 ~~~-~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v 231 (236)
... .+.|.. ..+|||.+|+++++|.++. |++||+|+|+|+|+|
T Consensus 76 ~~~~~~~F~~-~~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 76 KRIKSHSFNN-PSSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEECEEECT-TSEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred eeeeeeEEee-ecccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 223 478874 4889999999999999853 899999999999987
No 15
>smart00061 MATH meprin and TRAF homology.
Probab=99.78 E-value=2.3e-18 Score=121.91 Aligned_cols=93 Identities=28% Similarity=0.415 Sum_probs=79.8
Q ss_pred EEEEEccccccc-CceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCcc
Q 026621 105 HVWKIENFSKLE-AKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKH 183 (236)
Q Consensus 105 ~~w~I~nfs~l~-~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~ 183 (236)
++|.|+||+.+. ++.+.|++|.+||++|+|.+||+ ++|||+||.|.+....+..|++.|+++++|++|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 78899999999999999999998 47999999998765545589999999999999997655
Q ss_pred eeeeceeeecCCCCCCchhccc
Q 026621 184 NEKKASTWLSTSSEDWGWSTFV 205 (236)
Q Consensus 184 ~~~~~~~~F~~~~~~~G~~~Fi 205 (236)
.....+.|.. ..+|||.+||
T Consensus 76 -~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 -SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred -eeeeeEEEcC-CCccceeeEC
Confidence 3455688875 6889999886
No 16
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.75 E-value=9.7e-18 Score=129.09 Aligned_cols=127 Identities=21% Similarity=0.348 Sum_probs=98.8
Q ss_pred CCeEEEEEccccccc-----CceeecccEEe-CCeEEEEEEecCCCCC-CCCceEEEEEEecCCCCC-CCCCeE-EEEEE
Q 026621 102 NYKHVWKIENFSKLE-----AKLYESEVFVA-GNQKWKIKLYPKGQGV-GRGSHISVYLALADLSTI-TRDSKI-YVHFT 172 (236)
Q Consensus 102 ~~~~~w~I~nfs~l~-----~~~~~S~~f~~-gg~~W~l~~yp~G~~~-~~~~~lsiyL~~~~~~~~-~~~w~~-~~~f~ 172 (236)
+..+.|+|.||+.+. ...++||.|.. .|++.+|++||+|++. +++.|+|||++++.++.+ -..|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 356899999999864 35799999976 5999999999999874 567899999999998764 468995 56899
Q ss_pred EEEEeCCC---C-cceee----e---c------eeeecC--------------CCCCCchhccccccccccCCCCceECC
Q 026621 173 LRIRDQVL---S-KHNEK----K---A------STWLST--------------SSEDWGWSTFVELSYFNKAENGFLMND 221 (236)
Q Consensus 173 l~l~n~~~---~-~~~~~----~---~------~~~F~~--------------~~~~~G~~~Fi~~~~L~~~~~gyl~~D 221 (236)
|.|++|+. . .+++. . . ...|.. .+.++||++|++++.|+. .+||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence 99999964 1 12211 0 0 011332 235899999999999997 7899999
Q ss_pred EEEEEEEEE
Q 026621 222 VCIVEAEVL 230 (236)
Q Consensus 222 ~l~ie~~v~ 230 (236)
+|.|.++++
T Consensus 159 tlfI~~~~~ 167 (167)
T cd03783 159 DLIIFVDFE 167 (167)
T ss_pred eEEEEEecC
Confidence 999998863
No 17
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.73 E-value=2.3e-17 Score=126.36 Aligned_cols=126 Identities=20% Similarity=0.268 Sum_probs=99.8
Q ss_pred CCeEEEEEccccccc-----CceeecccEE-eCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE-EEEEE
Q 026621 102 NYKHVWKIENFSKLE-----AKLYESEVFV-AGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY-VHFTL 173 (236)
Q Consensus 102 ~~~~~w~I~nfs~l~-----~~~~~S~~f~-~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~-~~f~l 173 (236)
+..+.|+|.||+++. ...++||+|. ..|++.++++||+|.+.+ +.|||||+++.+++.+ -..|++. -+++|
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 457999999999864 3579999996 479999999999998875 6799999999998864 4689999 89999
Q ss_pred EEEeCCC----Ccceee--e-------c-eeee--cCC-----------------CCCCchhccccccccccCCCCceEC
Q 026621 174 RIRDQVL----SKHNEK--K-------A-STWL--STS-----------------SEDWGWSTFVELSYFNKAENGFLMN 220 (236)
Q Consensus 174 ~l~n~~~----~~~~~~--~-------~-~~~F--~~~-----------------~~~~G~~~Fi~~~~L~~~~~gyl~~ 220 (236)
.|++|+. ..|++. . . ...| ... +.++||+.|+++++|+. ..||+|
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd 157 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG 157 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence 9999974 123322 0 0 0123 211 46899999999999997 689999
Q ss_pred CEEEEEEEEE
Q 026621 221 DVCIVEAEVL 230 (236)
Q Consensus 221 D~l~ie~~v~ 230 (236)
|++.|-++++
T Consensus 158 D~ifi~~~~e 167 (167)
T cd03782 158 DDVIFLLTME 167 (167)
T ss_pred CeEEEEEecC
Confidence 9999988763
No 18
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.6e-15 Score=134.79 Aligned_cols=132 Identities=24% Similarity=0.477 Sum_probs=109.8
Q ss_pred cCCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCC--CC-CCCeEEEEEEEEE
Q 026621 99 SASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLST--IT-RDSKIYVHFTLRI 175 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~--~~-~~w~~~~~f~l~l 175 (236)
.....+++|+|++||.+.. +++||+|.+||+.|+|.++|+|+... -+|+||+....+. .. ..|.|+|+|.|.|
T Consensus 35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~I 110 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDI 110 (1089)
T ss_pred HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeec
Confidence 3456689999999999975 68999999999999999999998653 3899999976431 12 3599999999999
Q ss_pred EeCCCCc-ceeeeceeeecCCCCCCchhccccccccccCCCC---ceECCEEEEEEEEEEEEe
Q 026621 176 RDQVLSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENG---FLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 176 ~n~~~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~g---yl~~D~l~ie~~v~v~~~ 234 (236)
-++..+. .......|+|+....+|||.+|+.+..|..|..| |+.+|++.|.|.|+|++.
T Consensus 111 s~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 111 SNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9988753 2234566899988899999999999999987765 688999999999999976
No 19
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.50 E-value=1.2e-13 Score=104.93 Aligned_cols=73 Identities=21% Similarity=0.375 Sum_probs=62.8
Q ss_pred CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEEe
Q 026621 7 LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVK 82 (236)
Q Consensus 7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i~ 82 (236)
...+|++.|+|+|+|+||..+..+..+. ..|+|......|||++||+|++|.++.+|||+||+|+|+|+|.|.
T Consensus 61 ~~~~w~i~a~~~~~l~~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 61 DSTSWSCHAQAVLRIINYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCCCCeEEEEEEEEEEcCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 3458999999999999998655554444 567998878899999999999999888999999999999999864
No 20
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.47 E-value=1.5e-13 Score=104.06 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=62.0
Q ss_pred CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccC----CCCeEeCCEEEEEEEEE
Q 026621 7 LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDA----SNGYLVGDTCVFGAEVL 80 (236)
Q Consensus 7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~----~~gyl~~d~~~i~~~v~ 80 (236)
++.+|.++|+|+|.|+||.++..+.... ..|+|+....+|||.+||++++|.+| .+|||+||+++|+|+|+
T Consensus 60 ~~~~~~v~a~f~~~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 60 LDEDWSVCAQFALVISNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCCCCeEEEEEEEEEEcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 5789999999999999998776655544 68999988889999999999999865 67999999999999884
No 21
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.16 E-value=7.3e-11 Score=89.77 Aligned_cols=69 Identities=29% Similarity=0.455 Sum_probs=57.6
Q ss_pred CcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 10 GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
.+.+.|+|+|.|+||++++....... ..++|+. ..+|||.+||++++|.++.+|||+||+++|+++|.|
T Consensus 68 ~~~v~a~f~~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 68 KSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred CCcEEEEEEEEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence 46899999999999997665433321 4578875 489999999999999988899999999999999983
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.01 E-value=8e-10 Score=81.13 Aligned_cols=66 Identities=30% Similarity=0.557 Sum_probs=54.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
.+|++.|+++|.|+|+.++..... . ..++|+.. ..||+.+||++++|.++. |+.||+++|+|+|+|
T Consensus 54 ~~w~~~~~~~~~~~~~~~~~~~~~-~---~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 54 LEWSIEAEFRFRLLNQNGKSISKR-I---KSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp SSSSEEEEEEEEEE-TTSCEEEEE-E---ECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred cceeeeEEEEEEEecCCCCcceee-e---eeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 699999999999999987773332 1 34899666 889999999999998754 999999999999974
No 23
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=98.84 E-value=5.6e-09 Score=78.56 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=53.7
Q ss_pred CcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeC--CEEEEEEEEE
Q 026621 10 GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVG--DTCVFGAEVL 80 (236)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~--d~~~i~~~v~ 80 (236)
.|.+.++|+|+|+||.++..+.... ..+.|.. ..+|||.+||++++|.+ +|||.| |+++|++.|+
T Consensus 64 ~~~~~~~~~l~llnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 64 GEASKYEYRVEMVHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCceeEEEEEEEEcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 4788899999999996555555444 5688865 47899999999999974 799999 9999998886
No 24
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=98.81 E-value=9.9e-09 Score=78.86 Aligned_cols=70 Identities=29% Similarity=0.490 Sum_probs=51.2
Q ss_pred CCCcEEEEEEEEEEEeCCCC--ceEEEec--ccceeeEee-----cCcccccccccccccccccCCCCeEeCCEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKD--EFLILQD--AMGKERRFH-----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAE 78 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~ 78 (236)
+..|.+.|+|+|.|+||.++ ..+.... .....+.|. .....|||.+||++++|.+ .|||+||+++|+++
T Consensus 70 ~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~ 147 (149)
T cd00270 70 LLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVE 147 (149)
T ss_pred cccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEE
Confidence 46799999999999999864 2221110 000123454 2457899999999999975 48999999999998
Q ss_pred E
Q 026621 79 V 79 (236)
Q Consensus 79 v 79 (236)
|
T Consensus 148 v 148 (149)
T cd00270 148 V 148 (149)
T ss_pred E
Confidence 7
No 25
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=98.80 E-value=1.3e-08 Score=74.90 Aligned_cols=67 Identities=30% Similarity=0.455 Sum_probs=53.0
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEecccceeeEee-cCcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFH-VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL 80 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~ 80 (236)
+..|.+.|+|+|.|+|+..++..... ..+.|. .....|||.+||++++|.++ ++++||+++|+|+|.
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 59 LEKWSVRAEFTLKLVNQNGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCcEEEEEEEEEECCCCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 46799999999999999844444332 345553 66789999999999999864 349999999999883
No 26
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.80 E-value=6.1e-10 Score=95.14 Aligned_cols=218 Identities=22% Similarity=0.262 Sum_probs=142.8
Q ss_pred CcEEEEEEEEEEEeCCCCce-EEEecccceeeEee--cCcccccccccccccccccCCCCeEeCCEEEEEEEEE-Eeccc
Q 026621 10 GWEVYVIFRLFVLDQNKDEF-LILQDAMGKERRFH--VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL-VKERN 85 (236)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~-~~~~~~~~~~~~F~--~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~-i~~~~ 85 (236)
+|+++|++.|++.|+...++ ...+. ...+|. ...+.||+.+++|+..+.++.+||+++..+++.+++- .++.
T Consensus 54 ~~~~~~~~~l~v~n~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~- 129 (297)
T KOG1987|consen 54 GWERYAKLRLTVVNQKSEKYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM- 129 (297)
T ss_pred CcceeEEEEEEEccCCCcceeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee-
Confidence 99999999999999998887 65522 344443 4478999999999999999999999998777776655 3332
Q ss_pred CCccceEEEE------EeecCCC----CeEEEEEcccccccC----ceeecccEEeCCeEEEEEEecCCCCCCCCceEEE
Q 026621 86 KCKGECLFLA------KLTSASN----YKHVWKIENFSKLEA----KLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISV 151 (236)
Q Consensus 86 ~~~~e~~s~~------~~~~~~~----~~~~w~I~nfs~l~~----~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsi 151 (236)
.+.+..... .+..... ..|+|.+.+++..+. ....+..|..++..|++.++|.+.+......++.
T Consensus 130 -~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~ 208 (297)
T KOG1987|consen 130 -GKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQ 208 (297)
T ss_pred -cccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcc
Confidence 334432210 0013334 789999999999872 2677789999999999999999976654567788
Q ss_pred EEEecCCCCC--CCCCeEEEEEEEEEEeCCCCc--ce--eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEE
Q 026621 152 YLALADLSTI--TRDSKIYVHFTLRIRDQVLSK--HN--EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIV 225 (236)
Q Consensus 152 yL~~~~~~~~--~~~w~~~~~f~l~l~n~~~~~--~~--~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~i 225 (236)
+|...+.... ...-.+.+......+|+...+ +. .+....+.......+ ..++.++.++.....++++++++.+
T Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (297)
T KOG1987|consen 209 SLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEV 287 (297)
T ss_pred cHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhh
Confidence 8887653221 111223344444456665432 21 111111111111112 4567777766665567888888888
Q ss_pred EEEEEEEE
Q 026621 226 EAEVLRIS 233 (236)
Q Consensus 226 e~~v~v~~ 233 (236)
++....++
T Consensus 288 ~~~~~~~~ 295 (297)
T KOG1987|consen 288 EAESEPLS 295 (297)
T ss_pred hcccCCcC
Confidence 88766554
No 27
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=81.15 Aligned_cols=119 Identities=26% Similarity=0.523 Sum_probs=97.1
Q ss_pred EEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCcc-
Q 026621 105 HVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKH- 183 (236)
Q Consensus 105 ~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~- 183 (236)
+.|.+.+|+... ..++|..|..+|..|++.+||.|+ +++.|+.+.... +|++.+.+.+.+.|+...+.
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence 348899998876 668899999999999999999974 789999887642 79999999999999988643
Q ss_pred eee-eceeeecCC--CCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 184 NEK-KASTWLSTS--SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 184 ~~~-~~~~~F~~~--~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
... ....+|... ...||+..+++...+.++..||++++.+++-+...|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~ 128 (297)
T KOG1987|consen 75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEA 128 (297)
T ss_pred eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceee
Confidence 333 344555443 578999999999999998899999988888888776654
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.1e-09 Score=94.53 Aligned_cols=71 Identities=23% Similarity=0.432 Sum_probs=64.8
Q ss_pred CcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCC---eEeCCEEEEEEEEE-Eec
Q 026621 10 GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNG---YLVGDTCVFGAEVL-VKE 83 (236)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~g---yl~~d~~~i~~~v~-i~~ 83 (236)
.|.|||+|.|.|-|++.+....... ++|||....+||||++|+.|..|..|..| |+.+++++|.|+|+ .++
T Consensus 99 ~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 99 YYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred chhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 4999999999999999988887766 89999999999999999999999988777 79999999999999 554
No 29
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=98.60 E-value=1.3e-07 Score=72.37 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=51.9
Q ss_pred CCcEEEEEEEEEEEeCCCCce--EEEecccceeeEee----cCcccccccccccccccccCCCCeEeCCEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEF--LILQDAMGKERRFH----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEV 79 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~--~~~~~~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v 79 (236)
..|.+.|+++|+|++|.+... ..... ....+.|. .....||+.+||++++|+....+||.||++.|+|+|
T Consensus 71 l~wpv~~~~tfsLlDq~~~~~~~~~~~~-~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 71 LPWPFRHKVTFMLLDQNNREHVIDAFRP-DLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred cCcceEEEEEEEEECCCCCCCCcEeecC-CcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 379999999999999974332 12211 00135686 344579999999999997543599999999999987
No 30
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=98.55 E-value=7.4e-08 Score=73.94 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=51.7
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEe--cccceeeEeec-----CcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKDEFLILQ--DAMGKERRFHV-----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL 80 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~ 80 (236)
...|.+.|+|+|.|++|.++..+... ......+.|.. ....|||.+||++++|.. .|||.||+++|+++|.
T Consensus 70 ~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 70 HLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred ccCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 35799999999999999854332111 00002345752 345799999999999974 5899999999999884
No 31
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=98.51 E-value=2.7e-07 Score=70.81 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=52.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceE--EEecccceeeEeecC----cccccccccccccccccCCCCeEeCCEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFL--ILQDAMGKERRFHVL----KLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEV 79 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~--~~~~~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v 79 (236)
..|.+.|+++|+|++|.+...+ .........+.|... ...||+.+||++++|+....+||.||++.|.|.|
T Consensus 71 l~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 71 LQWPFRQRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred cCcceEEEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 5799999999999999744332 111100124668654 4579999999999997655699999999999887
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2e-07 Score=92.14 Aligned_cols=130 Identities=22% Similarity=0.254 Sum_probs=105.8
Q ss_pred CCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 026621 100 ASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~ 179 (236)
......+|...+...+.. ...|+.|..|+.+|++.+.|+++. ...+++|+.+...... ..|++++++.+.+.|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~ 98 (1093)
T KOG1863|consen 24 SLNQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTI 98 (1093)
T ss_pred hhcccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCC
Confidence 334445566666555554 688999999999999999999883 3679999999887655 55999999999999933
Q ss_pred CCc-ceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 180 LSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 180 ~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
++. ...+...|.|.....+||+..|+.++++.++..||+.+|++.++++|.+-.-
T Consensus 99 ~~~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 154 (1093)
T KOG1863|consen 99 DNLPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQP 154 (1093)
T ss_pred CCchhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecC
Confidence 332 3355667899888899999999999999999999999999999999988653
No 33
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=98.36 E-value=8.6e-07 Score=68.57 Aligned_cols=69 Identities=23% Similarity=0.400 Sum_probs=49.1
Q ss_pred CCcEEEEEEEEEEEeCCCC--ce--EEEec--ccceeeEeec--------CcccccccccccccccccCCCCeEeCCEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKD--EF--LILQD--AMGKERRFHV--------LKLEWGFDQFIPLEEFNDASNGYLVGDTCV 74 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~--~~--~~~~~--~~~~~~~F~~--------~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~ 74 (236)
..|.+.|+|+|+|++|.++ .. +.... .......|.. ....||+.+||++++|+ .+|||.||+++
T Consensus 71 l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~ 148 (154)
T cd03781 71 LEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIF 148 (154)
T ss_pred cCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEE
Confidence 4899999999999999754 11 11000 0001234542 33469999999999997 47899999999
Q ss_pred EEEEE
Q 026621 75 FGAEV 79 (236)
Q Consensus 75 i~~~v 79 (236)
|+|+|
T Consensus 149 Irc~v 153 (154)
T cd03781 149 LRASV 153 (154)
T ss_pred EEEEe
Confidence 99987
No 34
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=98.33 E-value=1.2e-06 Score=68.07 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=50.6
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecc--cc---eeeEe-ecCcccccccccccccccccCCCCeEeCCEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQDA--MG---KERRF-HVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEV 79 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~---~~~~F-~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v 79 (236)
..|.+..+++|.|++|.+.+. ..... .. ..+|. ......||+..|+|+++|.+. .|||.||++.|+|.|
T Consensus 89 L~WPf~~~itl~llDQ~~r~h-i~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 89 LRWPFNQKVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred cCCceeeEEEEEEECCCCCCc-ceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 789999999999999975333 22110 00 11333 344457999999999999754 599999999999877
No 35
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=98.13 E-value=5.4e-06 Score=65.97 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=50.1
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEe--cccceeeEeecC----cccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQ--DAMGKERRFHVL----KLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL 80 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~ 80 (236)
..|.+.++++|.|++|.....+... ......+.|... ...||+++||++++|. ..+||.||++.|.|.|.
T Consensus 109 L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 109 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred cCCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 4799999999999999642111110 000023457522 3579999999999997 47899999999998875
No 36
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=97.91 E-value=3.7e-05 Score=60.06 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCCCcE-EEEEEEEEEEeCCC---CceEEEe----cccc-----eeeEeec-----------------Cccccccccccc
Q 026621 7 LGLGWE-VYVIFRLFVLDQNK---DEFLILQ----DAMG-----KERRFHV-----------------LKLEWGFDQFIP 56 (236)
Q Consensus 7 ~~~~w~-~~a~f~~~l~n~~~---~~~~~~~----~~~~-----~~~~F~~-----------------~~~~wG~~~fi~ 56 (236)
....|. +.|+++|+|++|.. ...+... +... ....|.. ...+|||..||+
T Consensus 66 ~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis 145 (167)
T cd03771 66 DVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFIS 145 (167)
T ss_pred ccccCcceeEEEEEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCcccccccee
Confidence 356899 58999999999962 1112111 1000 0001222 234799999999
Q ss_pred ccccccCCCCeEeCCEEEEEEEE
Q 026621 57 LEEFNDASNGYLVGDTCVFGAEV 79 (236)
Q Consensus 57 ~~~l~~~~~gyl~~d~~~i~~~v 79 (236)
+++|.. .+||.||++.|.+++
T Consensus 146 ~~~L~~--r~ylk~dtl~i~~~~ 166 (167)
T cd03771 146 HSRLRR--RDFLKGDDLIILLDF 166 (167)
T ss_pred HHHhcc--CCCCcCCEEEEEEEe
Confidence 999985 569999999999876
No 37
>smart00061 MATH meprin and TRAF homology.
Probab=97.69 E-value=0.00011 Score=51.14 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=34.4
Q ss_pred CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccc
Q 026621 7 LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFI 55 (236)
Q Consensus 7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi 55 (236)
.+.+|++.|+|+|.|+||.+... .+. ..++|.. ..+|||.+||
T Consensus 53 ~~~~w~v~a~~~~~l~~~~~~~~--~~~---~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 53 DSRKWSIEAEFTLKLVSQNGKSL--SKK---DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCCCeEEEEEEEEEEEeCCCCEE--eee---eeEEEcC-CCccceeeEC
Confidence 34589999999999999986544 223 6789987 6899999986
No 38
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00022 Score=70.96 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
..|+|++.+.+.+.|..++.....+. ++|+|.....+||+.+|+.+.++.++..||+.+|++.++++|.+
T Consensus 82 ~~~s~~~~~~~~v~~~~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 151 (1093)
T KOG1863|consen 82 KSWSCGAQAVLRVKNTIDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRV 151 (1093)
T ss_pred cceEecchhhhccccCCCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeee
Confidence 34999999999999955555555544 88999999999999999999999999999999999999999993
No 39
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=96.82 E-value=0.0014 Score=50.99 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=46.7
Q ss_pred CCcEEE-EEEEEEEEeCCC---CceEE----Eecccce------eeEeec--------------Cccccccccccccccc
Q 026621 9 LGWEVY-VIFRLFVLDQNK---DEFLI----LQDAMGK------ERRFHV--------------LKLEWGFDQFIPLEEF 60 (236)
Q Consensus 9 ~~w~~~-a~f~~~l~n~~~---~~~~~----~~~~~~~------~~~F~~--------------~~~~wG~~~fi~~~~l 60 (236)
..|.+. -+.+|.|++|.. ...+. ..+.... .-.|.. ...++||+.||+++.|
T Consensus 70 L~WP~~~~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L 149 (167)
T cd03783 70 LEWPALNRQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQL 149 (167)
T ss_pred ccCCCcCCEEEEEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHH
Confidence 689965 589999999963 22222 1110000 012432 2458999999999999
Q ss_pred ccCCCCeEeCCEEEEEEEE
Q 026621 61 NDASNGYLVGDTCVFGAEV 79 (236)
Q Consensus 61 ~~~~~gyl~~d~~~i~~~v 79 (236)
.. .+||.||++.|.+++
T Consensus 150 ~~--r~yikdDtlfI~~~~ 166 (167)
T cd03783 150 RR--RSFLKNDDLIIFVDF 166 (167)
T ss_pred hh--CCcccCCeEEEEEec
Confidence 84 789999999998775
No 40
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.51 E-value=0.002 Score=57.25 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=68.9
Q ss_pred cCCCCeEEEEEccccccc-------CceeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621 99 SASNYKHVWKIENFSKLE-------AKLYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~-------~~~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~ 168 (236)
....+...|+|.+++..+ ...++|+.|.. .|++-+.++|-+|++.+.+.++|+|+.+..++.. ...|+++
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence 466899999999996543 35688999974 7999999999999988888999999999988764 4689999
Q ss_pred EEEEEEEEeC
Q 026621 169 VHFTLRIRDQ 178 (236)
Q Consensus 169 ~~f~l~l~n~ 178 (236)
-++++.+++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 41
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=96.28 E-value=0.0068 Score=47.02 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=48.3
Q ss_pred CCcEEE-EEEEEEEEeCCC---CceEEEe----cccceee---Ee--ecC-----------------ccccccccccccc
Q 026621 9 LGWEVY-VIFRLFVLDQNK---DEFLILQ----DAMGKER---RF--HVL-----------------KLEWGFDQFIPLE 58 (236)
Q Consensus 9 ~~w~~~-a~f~~~l~n~~~---~~~~~~~----~~~~~~~---~F--~~~-----------------~~~wG~~~fi~~~ 58 (236)
..|.+. -+.+|.|++|.. ...+... +..-+.. .| ... ..++|++.||+++
T Consensus 68 L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~ 147 (167)
T cd03782 68 LQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHL 147 (167)
T ss_pred ccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHH
Confidence 689999 899999999963 2233222 1000011 24 222 4789999999999
Q ss_pred ccccCCCCeEeCCEEEEEEEE
Q 026621 59 EFNDASNGYLVGDTCVFGAEV 79 (236)
Q Consensus 59 ~l~~~~~gyl~~d~~~i~~~v 79 (236)
.|.. ..||.||.+.|-+++
T Consensus 148 ~L~~--r~yikdD~ifi~~~~ 166 (167)
T cd03782 148 RLRS--RDFIKGDDVIFLLTM 166 (167)
T ss_pred HHhh--cCcccCCeEEEEEec
Confidence 9985 789999999987765
No 42
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=21.31 E-value=1.5e+02 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.819 Sum_probs=14.0
Q ss_pred EeCCeEEEEEEecCCC
Q 026621 126 VAGNQKWKIKLYPKGQ 141 (236)
Q Consensus 126 ~~gg~~W~l~~yp~G~ 141 (236)
+++|++|+-.+.|.|.
T Consensus 38 tI~g~~~~~sl~p~g~ 53 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGN 53 (80)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 5799999999999764
Done!