Query 026621
Match_columns 236
No_of_seqs 225 out of 1358
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 5.1E-32 1.7E-36 209.2 13.5 134 100-235 16-151 (155)
2 3ivv_A Speckle-type POZ protei 100.0 1.1E-30 3.6E-35 199.7 10.6 131 99-234 7-145 (145)
3 4gjh_A TNF receptor-associated 100.0 4.6E-30 1.6E-34 202.6 5.8 136 99-234 20-175 (178)
4 1ca9_A TRAF2, protein (TNF rec 100.0 5E-29 1.7E-33 199.0 6.2 133 100-233 40-191 (192)
5 1d00_A Tumor necrosis factor r 99.9 1.3E-28 4.3E-33 192.6 7.5 133 99-232 15-166 (168)
6 4ghu_A TNF receptor-associated 99.9 3.4E-28 1.2E-32 194.7 6.0 133 99-233 36-188 (198)
7 1lb6_A TNF receptor-associated 99.9 1.7E-27 5.9E-32 184.7 9.8 133 100-234 2-158 (160)
8 2gkw_A TNF receptor-associated 99.9 9.2E-28 3.1E-32 191.5 6.6 132 100-233 37-188 (192)
9 1flk_A TNF receptor associated 99.9 4.3E-27 1.5E-31 192.4 5.7 134 99-234 72-225 (228)
10 3hqi_A Speckle-type POZ protei 99.9 2.6E-26 9E-31 196.0 10.7 130 100-234 4-141 (312)
11 2f1z_A Ubiquitin carboxyl-term 99.9 6E-26 2.1E-30 206.5 11.4 133 100-234 28-162 (522)
12 2foj_A Ubiquitin carboxyl-term 99.6 4.8E-15 1.7E-19 113.7 7.4 75 5-82 74-148 (155)
13 3ivv_A Speckle-type POZ protei 99.5 4.2E-14 1.4E-18 107.3 5.2 70 9-81 73-142 (145)
14 4gwm_A Meprin A subunit beta; 99.4 6.3E-13 2.2E-17 121.1 10.7 127 99-232 402-566 (592)
15 2f1z_A Ubiquitin carboxyl-term 99.2 8.3E-12 2.8E-16 113.4 5.7 74 6-82 87-160 (522)
16 4gjh_A TNF receptor-associated 99.2 4.3E-12 1.5E-16 99.5 1.5 74 8-81 93-172 (178)
17 3hqi_A Speckle-type POZ protei 99.1 1.4E-10 4.7E-15 98.5 5.8 70 9-81 69-138 (312)
18 1d00_A Tumor necrosis factor r 99.0 1.1E-10 3.7E-15 90.5 1.8 72 9-81 89-165 (168)
19 1ca9_A TRAF2, protein (TNF rec 98.9 1.7E-10 5.9E-15 91.3 1.5 72 9-81 113-189 (192)
20 1lb6_A TNF receptor-associated 98.8 9E-10 3.1E-14 84.6 2.7 71 8-80 75-154 (160)
21 2gkw_A TNF receptor-associated 98.8 5.1E-10 1.7E-14 88.7 1.1 72 8-81 109-186 (192)
22 4ghu_A TNF receptor-associated 98.8 5.4E-10 1.9E-14 88.9 1.1 70 9-80 110-185 (198)
23 1flk_A TNF receptor associated 98.8 1.3E-09 4.4E-14 88.6 1.7 72 8-81 145-222 (228)
24 4gwm_A Meprin A subunit beta; 92.3 0.053 1.8E-06 49.5 2.1 34 47-82 533-567 (592)
25 3v0r_A Major allergen ALT A 1; 27.4 14 0.00047 26.5 0.2 28 99-126 8-37 (133)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.98 E-value=5.1e-32 Score=209.22 Aligned_cols=134 Identities=20% Similarity=0.265 Sum_probs=115.0
Q ss_pred CCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCC-CCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026621 100 ASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGV-GRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ 178 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~-~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~ 178 (236)
...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|... ..+.+|+++|+|+|+|+||
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~ 93 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 93 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence 45688999999999996 77999999999999999999999765 346899999999654 4466799999999999999
Q ss_pred CCCc-ceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEec
Q 026621 179 VLSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKA 235 (236)
Q Consensus 179 ~~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~t 235 (236)
.++. +..+...++|.....+|||.+||++++|+++++|||+||+|+|+|+|+|.++|
T Consensus 94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 8865 55566778898767889999999999999888999999999999999998876
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=1.1e-30 Score=199.66 Aligned_cols=131 Identities=24% Similarity=0.478 Sum_probs=113.3
Q ss_pred cCCCCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEE
Q 026621 99 SASNYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFT 172 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~ 172 (236)
....++|+|+|+|||.++ ++.++|++|.+||+ +|+|++||+|+..+..+||||||+|.+. +.|+++|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~ 82 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK 82 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence 567789999999999986 47899999999996 9999999999876557899999999875 3799999999
Q ss_pred EEEEeCCCCcce--eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 173 LRIRDQVLSKHN--EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 173 l~l~n~~~~~~~--~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
|+|+||.++.+. .....++|. ...+|||.+||++++|+++++|||+||+|+|+|+|+|+++
T Consensus 83 l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 83 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999987643 223567886 4678999999999999877789999999999999999863
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.96 E-value=4.6e-30 Score=202.59 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=113.6
Q ss_pred cCCCCeEEEEEcccccccC-------ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCeEE
Q 026621 99 SASNYKHVWKIENFSKLEA-------KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~~~ 168 (236)
.+..+.|+|+|+|||.+++ ..+.|++|.+| |++|+|++||+|+..+.++||||||+|.+++. ....|+++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 5778999999999999863 27999999999 99999999999987766789999999987653 23579999
Q ss_pred EEEEEEEEeCCCCc-ceeee-----ceeeecC----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 169 VHFTLRIRDQVLSK-HNEKK-----ASTWLST----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 169 ~~f~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
|+|+|.|+||.++. ++... ..+.|+. ...+|||.+||++++|++|.+|||+||+|+|+|+|.|.++
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999998753 43321 3456763 2468999999999999988889999999999999987653
No 4
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.95 E-value=5e-29 Score=198.97 Aligned_cols=133 Identities=21% Similarity=0.309 Sum_probs=110.4
Q ss_pred CCCCeEEEEEcccccccC-----c--eeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEEE
Q 026621 100 ASNYKHVWKIENFSKLEA-----K--LYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIYV 169 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~~-----~--~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~~ 169 (236)
...+.|+|+|+|||.++. + .++|++|.+ ||++|+|++||+|++.+.++|||+||++.+++..+ .+|+++|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 678999999999999863 2 599999999 99999999999998766678999999998876544 6899999
Q ss_pred EEEEEEEeCCCCcceeeec-----eeeec----CCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621 170 HFTLRIRDQVLSKHNEKKA-----STWLS----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233 (236)
Q Consensus 170 ~f~l~l~n~~~~~~~~~~~-----~~~F~----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~ 233 (236)
+|+|.|+||.++++..... ...|. ..+.+|||.+||++++|++ ..|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 9999999999876543321 12353 1246899999999999995 37999999999999998854
No 5
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.95 E-value=1.3e-28 Score=192.56 Aligned_cols=133 Identities=22% Similarity=0.306 Sum_probs=109.5
Q ss_pred cCCCCeEEEEEcccccccC-----c--eeecccEE--eCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEE
Q 026621 99 SASNYKHVWKIENFSKLEA-----K--LYESEVFV--AGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~~-----~--~~~S~~f~--~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~ 168 (236)
....+.|+|+|+|||.+++ + .++|++|. +||++|+|++||+|++.+.++|||+||+|.+++..+ .+|+++
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceE
Confidence 3578999999999999862 2 38999996 799999999999998765678999999998765543 689999
Q ss_pred EEEEEEEEeCCCCcceeeec-----eeeecC----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEE
Q 026621 169 VHFTLRIRDQVLSKHNEKKA-----STWLST----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI 232 (236)
Q Consensus 169 ~~f~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~ 232 (236)
++|+|+|+||.++++..... .+.|.. .+.+|||.+||++++|+++ +|||+||+|+|+|+|+|.
T Consensus 95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 99999999999876553321 124542 3468999999999999974 499999999999999874
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=3.4e-28 Score=194.66 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=109.7
Q ss_pred cCCCCeEEEEEcccccccC-------ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621 99 SASNYKHVWKIENFSKLEA-------KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~ 168 (236)
....+.|+|+|+|||.+++ +.++|++|.+| |++|+|++||+|++.+.++||||||.+.+++.. ...|++.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 4678999999999998763 57999999999 999999999999887667899999999876543 3589999
Q ss_pred EEEEEEEEeCCCCc-ceeeec---------eeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621 169 VHFTLRIRDQVLSK-HNEKKA---------STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233 (236)
Q Consensus 169 ~~f~l~l~n~~~~~-~~~~~~---------~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~ 233 (236)
++|+|.|+||.++. +..... .+.|...+.+|||.+||++++|++ .|||+||+|+|+|+|+|+.
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~ 188 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTT
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEecc
Confidence 99999999998653 332211 122333456899999999999996 7999999999999998864
No 7
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.94 E-value=1.7e-27 Score=184.71 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=104.3
Q ss_pred CCCCeEEEEEccccccc-----Cc--eeecccEEeC--CeEEEEEEecCCCCCC-CCceEEEEEEecCCCCC-CCCCeEE
Q 026621 100 ASNYKHVWKIENFSKLE-----AK--LYESEVFVAG--NQKWKIKLYPKGQGVG-RGSHISVYLALADLSTI-TRDSKIY 168 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~~yp~G~~~~-~~~~lsiyL~~~~~~~~-~~~w~~~ 168 (236)
...+.|+|+|+|||.++ ++ .+.|++|.+| |++|+|++||+|+..+ .++|||+||++.+++.. ..+|+++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 45688999999999985 33 7999999999 9999999999997654 36899999999876543 3569999
Q ss_pred EEEEEEEEeCCCCc---ceeeec-----eeeecC-----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 169 VHFTLRIRDQVLSK---HNEKKA-----STWLST-----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 169 ~~f~l~l~n~~~~~---~~~~~~-----~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
|+|+|.|+||.++. +..... ...|.. ...+|||.+||++++|+. .|||+||+|+|+|+|+|+..
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 99999999998652 211111 112432 123799999999999995 79999999999999999864
No 8
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=9.2e-28 Score=191.53 Aligned_cols=132 Identities=21% Similarity=0.325 Sum_probs=109.3
Q ss_pred CCCCeEEEEEccccccc-----Cc--eeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEE
Q 026621 100 ASNYKHVWKIENFSKLE-----AK--LYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYV 169 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~ 169 (236)
...++|+|+|+|||.++ ++ .++|++|.+| |++|+|++||+|++.+.++|+|+||++.+++.. ...|++++
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 47899999999999986 33 5999999999 999999999999876667899999999876543 35799999
Q ss_pred EEEEEEEeCCCCc-ceeeec-----eeeecCC----CCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621 170 HFTLRIRDQVLSK-HNEKKA-----STWLSTS----SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233 (236)
Q Consensus 170 ~f~l~l~n~~~~~-~~~~~~-----~~~F~~~----~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~ 233 (236)
+|+|+|+||.+.. ++.+.. .+.|... +.+|||.+||++++|++ .|||+||+++|+|+|.|.+
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 9999999999863 443221 1457532 36899999999999997 5999999999999997754
No 9
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.93 E-value=4.3e-27 Score=192.36 Aligned_cols=134 Identities=20% Similarity=0.303 Sum_probs=110.5
Q ss_pred cCCCCeEEEEEcccccccC-------ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621 99 SASNYKHVWKIENFSKLEA-------KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY 168 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~ 168 (236)
....+.|+|+|.|||.++. ..++|++|.+| |++|+|++||+|++.+.++|+|+||++.+++.. ...|++.
T Consensus 72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEE
Confidence 3578999999999999862 27999999999 999999999999877667899999999876543 3579999
Q ss_pred EEEEEEEEeCCCCc-ceeee-----ceeeecC----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 169 VHFTLRIRDQVLSK-HNEKK-----ASTWLST----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 169 ~~f~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
++|+|+|+||.+.+ ++.+. ..+.|.. .+.+|||++||++++|++ .|||+||+|+|+|+|.|.+.
T Consensus 152 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 152 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence 99999999999764 33221 1234642 246899999999999997 79999999999999988654
No 10
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.93 E-value=2.6e-26 Score=196.04 Aligned_cols=130 Identities=23% Similarity=0.471 Sum_probs=108.3
Q ss_pred CCCCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEE
Q 026621 100 ASNYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTL 173 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l 173 (236)
..+++|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|+..+.++|+|+||+|.+. ..|++.|+|+|
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~ 79 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKF 79 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEE
Confidence 44678999999999996 67899999999985 9999999999876667899999999864 36899999999
Q ss_pred EEEeCCCCccee--eeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 174 RIRDQVLSKHNE--KKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 174 ~l~n~~~~~~~~--~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
+|+||.++.... ....++|+. +.+|||.+||+|++|+++.+|||+||+++|+|+|+|++.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 80 SILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 999999875432 235678874 468999999999999987789999999999999999964
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.93 E-value=6e-26 Score=206.51 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=111.8
Q ss_pred CCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCC-CCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026621 100 ASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVG-RGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ 178 (236)
Q Consensus 100 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~-~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~ 178 (236)
...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ .++||||||.|.+. ..+.+|+++|+|+|.|+|+
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 456789999999999986 79999999999999999999997543 46899999999876 4567899999999999999
Q ss_pred CCCc-ceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621 179 VLSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234 (236)
Q Consensus 179 ~~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~ 234 (236)
.++. +..+...++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...
T Consensus 106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p 162 (522)
T 2f1z_A 106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 162 (522)
T ss_dssp TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccc
Confidence 8764 4556677889766788999999999999887889999999999999998643
No 12
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.56 E-value=4.8e-15 Score=113.73 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEEe
Q 026621 5 SSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVK 82 (236)
Q Consensus 5 ~~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i~ 82 (236)
+..+.+|+++|+|+|.|+||.+++.+..+. ..|+|.....+|||++||++++|+++++|||+||+++|+|+|.|.
T Consensus 74 ~~~~~~w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~ 148 (155)
T 2foj_A 74 ESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 148 (155)
T ss_dssp TCCCSSCEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEEC
T ss_pred CCCCCCCEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEe
Confidence 345778999999999999998776555555 789998878899999999999999999999999999999999963
No 13
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.46 E-value=4.2e-14 Score=107.27 Aligned_cols=70 Identities=29% Similarity=0.438 Sum_probs=60.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
++|+++|+|+|+|+||.+++....... ..++|.. ..+|||++||++++|+++++|||+||+++|+|+|.|
T Consensus 73 ~~w~v~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V 142 (145)
T 3ivv_A 73 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142 (145)
T ss_dssp SSSEEEEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence 579999999999999997776644332 5789974 589999999999999988899999999999999983
No 14
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.42 E-value=6.3e-13 Score=121.13 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=99.7
Q ss_pred cCCCCeEEEEEccccccc---CceeecccEE-eCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE-EEEE
Q 026621 99 SASNYKHVWKIENFSKLE---AKLYESEVFV-AGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY-VHFT 172 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~-~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~-~~f~ 172 (236)
+..+..+.|+|.||+++- +..++||+|. ..||.++|.+||++ ..++|||++|..++++ ...|++. -+++
T Consensus 402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t 476 (592)
T 4gwm_A 402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQAT 476 (592)
T ss_dssp SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence 688999999999999974 5679999997 46999999999976 4699999999988753 5689995 7899
Q ss_pred EEEEeCCCCc----ceeeece-----------------------eeecC-----CCCCCchhccccccccccCCCCceEC
Q 026621 173 LRIRDQVLSK----HNEKKAS-----------------------TWLST-----SSEDWGWSTFVELSYFNKAENGFLMN 220 (236)
Q Consensus 173 l~l~n~~~~~----~~~~~~~-----------------------~~F~~-----~~~~~G~~~Fi~~~~L~~~~~gyl~~ 220 (236)
+.|++|+... +.++... ..|.. ++.+|||+.||+++.|+. ..||+|
T Consensus 477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~ 554 (592)
T 4gwm_A 477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG 554 (592)
T ss_dssp EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence 9999997542 1111100 01211 124689999999999997 579999
Q ss_pred CEEEEEEEEEEE
Q 026621 221 DVCIVEAEVLRI 232 (236)
Q Consensus 221 D~l~ie~~v~v~ 232 (236)
|+|+|.+.|+-+
T Consensus 555 d~~~i~~~~eD~ 566 (592)
T 4gwm_A 555 DDVYILLTVEDI 566 (592)
T ss_dssp TBEEEEEEEEEC
T ss_pred CeEEEEEEEEeC
Confidence 999999999755
No 15
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.22 E-value=8.3e-12 Score=113.35 Aligned_cols=74 Identities=22% Similarity=0.383 Sum_probs=66.6
Q ss_pred CCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEEe
Q 026621 6 SLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVK 82 (236)
Q Consensus 6 ~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i~ 82 (236)
..+.+|+++|+|+|.|+|+++++.+..+. ..|+|.....+|||.+||++++|.++++|||+||+++|+|+|.+.
T Consensus 87 ~~~~~w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~ 160 (522)
T 2f1z_A 87 SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 160 (522)
T ss_dssp CCCSSCBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEEC
T ss_pred CCCCCceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecc
Confidence 56789999999999999999887766555 689998888899999999999999989999999999999999954
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.17 E-value=4.3e-12 Score=99.46 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=58.8
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeEeec----CcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKDEFLILQD--AMGKERRFHV----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
+.+|.++|+|+|+|+||.++..+.... .....+.|+. ...+|||.+||++++|.+|.+|||+||+++|+|+|.|
T Consensus 93 ~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 93 LLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp GSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred ccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 358999999999999998766544321 0002467863 4578999999999999998899999999999999974
No 17
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.06 E-value=1.4e-10 Score=98.46 Aligned_cols=70 Identities=29% Similarity=0.405 Sum_probs=59.5
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
.+|.+.|+|+|.|+||++++....+.. ..++|... .+|||++||+|++|.++.+|||+||+++|+++|.|
T Consensus 69 ~~~~v~a~~~~~l~~~~~~~~~~~~~~--~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v 138 (312)
T 3hqi_A 69 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV 138 (312)
T ss_dssp CC-CEEEEEEEEEECTTSCEEEEEECS--SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEeCCCCcccccccC--CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEE
Confidence 589999999999999987776554422 57899855 68999999999999988899999999999999993
No 18
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=98.98 E-value=1.1e-10 Score=90.46 Aligned_cols=72 Identities=25% Similarity=0.361 Sum_probs=54.0
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEec-ccceeeEeec----CcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQD-AMGKERRFHV----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
.+|+++|+|+|.|+||.+.+.....- .....+.|.. ...+|||.+||++++|.++ +|||+||+++|+|+|.|
T Consensus 89 ~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v 165 (168)
T 1d00_A 89 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL 165 (168)
T ss_dssp SCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred CCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence 68999999999999998765332110 0000235652 3578999999999999864 49999999999999974
No 19
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=98.93 E-value=1.7e-10 Score=91.34 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=54.1
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEec-ccceeeEee----cCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQD-AMGKERRFH----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~-~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
.+|+++|+|+|.|+||.+++.....- .....+.|. ....+|||.+||++++|.+ .+|||+||+++|+|+|.|
T Consensus 113 ~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V 189 (192)
T 1ca9_A 113 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL 189 (192)
T ss_dssp SCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred CCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence 68999999999999998774332110 000112454 2356899999999999986 579999999999999974
No 20
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=98.85 E-value=9e-10 Score=84.60 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=50.8
Q ss_pred CCCcEEEEEEEEEEEeCCCCce--EEEec--ccceeeEeec-----CcccccccccccccccccCCCCeEeCCEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKDEF--LILQD--AMGKERRFHV-----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAE 78 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~--~~~~~--~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~ 78 (236)
+.+|.+.|+|+|+|+||.+... +.... .....+.|.. ...+|||.+||++++|. ++|||.||+++|+|+
T Consensus 75 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~ 152 (160)
T 1lb6_A 75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCE 152 (160)
T ss_dssp GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEE
T ss_pred cCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEE
Confidence 3579999999999999976521 11100 0001123432 12479999999999998 479999999999999
Q ss_pred EE
Q 026621 79 VL 80 (236)
Q Consensus 79 v~ 80 (236)
|.
T Consensus 153 V~ 154 (160)
T 1lb6_A 153 VS 154 (160)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 21
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.84 E-value=5.1e-10 Score=88.67 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeEeecC----cccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKDEFLILQD--AMGKERRFHVL----KLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
..+|.+.|+|+|.|+||.++..+.... .....+.|... ..+|||.+||++++|.+ +|||.||+++|+|+|.+
T Consensus 109 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 109 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp GSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred cCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence 358999999999999998775543221 00022567542 36899999999999986 59999999999999974
No 22
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.83 E-value=5.4e-10 Score=88.89 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEeccc------ceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621 9 LGWEVYVIFRLFVLDQNKDEFLILQDAM------GKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL 80 (236)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~------~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~ 80 (236)
.+|.+.|+|+|.|+||.++..+...... ...+.|.....+|||.+||++++|.+ +|||.||+++|+|+|.
T Consensus 110 l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~ 185 (198)
T 4ghu_A 110 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 185 (198)
T ss_dssp SCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEEC
T ss_pred CCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEE
Confidence 5899999999999999876554432100 01123445567999999999999984 8999999999999999
No 23
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=98.78 E-value=1.3e-09 Score=88.62 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=55.5
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeEee----cCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621 8 GLGWEVYVIFRLFVLDQNKDEFLILQD--AMGKERRFH----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV 81 (236)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i 81 (236)
+.+|.+.|+|+|+|+||.+++.+.... .....+.|. ....+|||++||++++|.+ +|||.||+++|+|+|.+
T Consensus 145 ~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 145 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp SSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred cCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence 458999999999999999776544321 001234575 2346899999999999985 79999999999999884
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=92.29 E-value=0.053 Score=49.53 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.7
Q ss_pred ccccccccccccccccCCCCeEeCCEEEEEEEEE-Ee
Q 026621 47 LEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL-VK 82 (236)
Q Consensus 47 ~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~-i~ 82 (236)
.+||++.||+++.|. ...||.||.+.|.+.|. +.
T Consensus 533 ~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~ 567 (592)
T 4gwm_A 533 GGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDIS 567 (592)
T ss_dssp EEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECG
T ss_pred CCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCc
Confidence 468999999999997 35799999999999998 53
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=27.42 E-value=14 Score=26.50 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=20.8
Q ss_pred cCCCCeEEEEEccccccc--CceeecccEE
Q 026621 99 SASNYKHVWKIENFSKLE--AKLYESEVFV 126 (236)
Q Consensus 99 ~~~~~~~~w~I~nfs~l~--~~~~~S~~f~ 126 (236)
.+..+.+.|+|.+|+..+ +..+.|-.|.
T Consensus 8 v~~~gd~vwkIs~F~~RKpeGty~nsvsFn 37 (133)
T 3v0r_A 8 VTTEGDYVWKISEFYGRKPEGTYYNSLGFN 37 (133)
T ss_dssp SCCCCTTEEEEEEEEEEETTSSSCSEEEEE
T ss_pred cccCCceEEEeeeeeeEcCCCCceeeEEEE
Confidence 466788999999999887 4555565554
Done!