BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026622
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 266 bits (679), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/234 (55%), Positives = 163/234 (69%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MRV+GR+AA L AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+N
Sbjct: 53 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLN 112
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPDS + DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +
Sbjct: 113 EVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMR 172
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI+ PG IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M
Sbjct: 173 AINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIM 232
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
TFTIEPM+ +G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 233 QPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 286
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 266 bits (679), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/234 (55%), Positives = 163/234 (69%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MRV+GR+AA L AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+N
Sbjct: 56 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLN 115
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPDS + DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +
Sbjct: 116 EVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMR 175
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI+ PG IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M
Sbjct: 176 AINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIM 235
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
TFTIEPM+ +G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 236 QPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 266 bits (679), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/234 (55%), Positives = 163/234 (69%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MRV+GR+AA L AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+N
Sbjct: 50 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLN 109
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPDS + DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +
Sbjct: 110 EVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMR 169
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI+ PG IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M
Sbjct: 170 AINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIM 229
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
TFTIEPM+ +G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 230 QPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 263 bits (671), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 128/234 (54%), Positives = 162/234 (69%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MRV+GR+AA L AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS TS+N
Sbjct: 56 MRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLN 115
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPDS + DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV T++ +
Sbjct: 116 EVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMR 175
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI+ PG IG+ I+ +A+R+ Y VVR F GHGIG FH VVLHY + M
Sbjct: 176 AINTVKPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIM 235
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
TFTIEPM+ +G+++ +WDD WT+VT+D +AQFEHT+L+T G EILT
Sbjct: 236 QPGMTFTIEPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 261 bits (668), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/235 (53%), Positives = 157/235 (66%), Gaps = 1/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 60 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 119
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +
Sbjct: 120 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 179
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY +N G M
Sbjct: 180 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 239
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
FTIEPM+ G W D WT VT DG SAQFEHT+L+T G EILT+
Sbjct: 240 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 294
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/235 (53%), Positives = 157/235 (66%), Gaps = 1/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 59 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 118
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +
Sbjct: 119 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 178
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY +N G M
Sbjct: 179 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 238
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
FTIEPM+ G W D WT VT DG SAQFEHT+L+T G EILT+
Sbjct: 239 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 293
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 261 bits (667), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 126/235 (53%), Positives = 157/235 (66%), Gaps = 1/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 143
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
E ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+ T +CL +
Sbjct: 144 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQ 203
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHY-RNNDHGRM 179
AI PG+ Y+++G IQ HA + VVR + GHGI ++FH P V HY +N G M
Sbjct: 204 AIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVM 263
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
FTIEPM+ G W D WT VT DG SAQFEHT+L+T G EILT+
Sbjct: 264 KSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR 318
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 253 bits (646), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 122/238 (51%), Positives = 158/238 (66%), Gaps = 4/238 (1%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+R + L + L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVN
Sbjct: 112 IREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVN 171
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD---EARNLVKVTKDC 117
E +CHGIPD R L+ GD INID++V+ G H D + T+F GD++D E + LV+
Sbjct: 172 EIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFS 231
Query: 118 LHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH- 176
L +AI C PGM YK IG I + + N+ VVR + GHG+G++FH++P V H++ N
Sbjct: 232 LMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAV 291
Query: 177 GRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
G M FTIEPM+ G + V+W D WT T DG LSAQFEHT+LIT +G EILT+
Sbjct: 292 GIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILTK 349
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 248 bits (634), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/229 (51%), Positives = 150/229 (65%), Gaps = 1/229 (0%)
Query: 6 RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICH 65
+L+ +VL+ A KPGITTDE+D+ VH+ ++ YPSPL Y GFPKSVCTSVNE ICH
Sbjct: 77 QLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCTSVNEVICH 136
Query: 66 GIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVC 125
GIPDSR LE+GD +NIDV+ YLNG+HGD + T F G DD++ LV +CL I V
Sbjct: 137 GIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLVHAAYECLCAGIGVV 196
Query: 126 APGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH-GRMVLNQT 184
P YK++G I+ A +Y VVR + GHG+G +FH P V HY NN G M
Sbjct: 197 KPEALYKQVGDAIEACASQYQCSVVRTYTGHGVGHLFHTSPTVCHYANNKSLGMMRPGHV 256
Query: 185 FTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
FTIEPM+ +G+ V W D WT T+DG SAQFEHT+++T G EI T
Sbjct: 257 FTIEPMINLGTWQDVTWPDKWTSTTKDGRRSAQFEHTMVVTNGGVEIFT 305
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y GFPKS+CTS+N
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSIN 76
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L++VT D + K
Sbjct: 77 HVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMK 136
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMV 180
I V PG + IG IQ +A+++NY VVR + GHGIGRVFH P +L+Y N G +
Sbjct: 137 GIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTL 196
Query: 181 LN-QTFTIEPMLTIGSINPVMWD-DNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
FT+EPM+ G+ + ++ D WT+ T D SLSAQFEHTI +T+DG EI T
Sbjct: 197 KEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFT 251
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y GFPKS+CTS+N
Sbjct: 17 MRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSIN 76
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L++VT D + K
Sbjct: 77 HVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMK 136
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMV 180
I V PG + IG IQ +A+++NY VVR + GHGIGRVFH P +L+Y N G +
Sbjct: 137 GIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTL 196
Query: 181 LN-QTFTIEPMLTIGSINPVMWD-DNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
FT+EPM+ G+ + ++ D WT+ T D SLSAQFEHTI +T+DG EI T
Sbjct: 197 KEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFT 251
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC S+
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 72
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 73 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 132
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 133 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 191
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 192 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC S+
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 73
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 74 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 133
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 134 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 192
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 193 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC S+
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 72
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 73 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 132
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 133 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 191
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 192 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC S+
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 73
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 74 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 133
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 134 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 192
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 193 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC S+
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 72
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 73 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 132
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 133 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 191
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 192 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC S+
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 72
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 73 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 132
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 133 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 191
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 192 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC S+
Sbjct: 11 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 70
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 71 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 130
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY ++
Sbjct: 131 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHY-DSRETN 189
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 190 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 246
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC S+
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 73
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 74 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 133
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY ++
Sbjct: 134 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY-DSRETN 192
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 193 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC S+
Sbjct: 13 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 72
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 73 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 132
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY ++
Sbjct: 133 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY-DSRETN 191
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 192 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 248
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC S+
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 73
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 74 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 133
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY ++
Sbjct: 134 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY-DSRETN 192
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 193 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG-AYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I++ A + LGY G+PKSVC S+
Sbjct: 14 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 73
Query: 60 NECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIPD ++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 74 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 133
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIG+ FH +P VLHY ++
Sbjct: 134 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHEEPQVLHY-DSRETN 192
Query: 179 MVLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+VL TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 193 VVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 249
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 137/237 (57%), Gaps = 4/237 (1%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
M+ +G+ A L ++ PG T +++ V ++ P+ GYGG+ + C SVN
Sbjct: 25 MKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVN 84
Query: 61 ECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
E + HG+P + ++GD +++DV G +GD + T+ G+ D+ + LV+VT++ L
Sbjct: 85 EEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLE 144
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRM 179
KAI + PG+ + IQ+ + + V+R +VGHG+GR H DP + +Y G +
Sbjct: 145 KAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTG-V 203
Query: 180 VLNQ--TFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
VL + T IEPM++ G V+ +D WT VT DGS A FEHTILIT +GAEILT+
Sbjct: 204 VLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILTK 260
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 128/234 (54%), Gaps = 1/234 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+ + C S+N
Sbjct: 13 MDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCCSIN 72
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+ ICHG P + L+DGD I +D+ V L G D+ ++ G+ E L++VTK L+
Sbjct: 73 DEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKALYL 132
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHG-RM 179
I G IG IQ + + YGVVR FVGHGIG H P++ HY G R+
Sbjct: 133 GIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIPHYGEAGKGLRL 192
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
TIEPM+ G+ M + WT TEDG LS Q+EH++ IT++G ILT
Sbjct: 193 KEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILT 246
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 130/242 (53%), Gaps = 10/242 (4%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+SVN
Sbjct: 43 MAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICSSVN 102
Query: 61 ECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
+ + HGIP + A L DGD ++ID L+G+HGD++ TF G V L + T+ +
Sbjct: 103 DQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSME 162
Query: 120 KAISVCAPGMEYKKIGKTI-------QDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYR 172
I+ PG + I + DR +G+V + GHGIGR H DP + +
Sbjct: 163 AGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRA-FGIVDGYGGHGIGRSMHLDPFLPNEG 221
Query: 173 NNDHGRMV-LNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEI 231
G ++ + IEPMLT+G+ + D+WT+VT DGS +A +EHT+ +T G I
Sbjct: 222 APGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRI 281
Query: 232 LT 233
LT
Sbjct: 282 LT 283
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 3/237 (1%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
++ G + A+V KPGITT E+D ++ + GA +P+ FP C SVN
Sbjct: 12 LKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVN 71
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV-KVTKDCLH 119
E + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + V V
Sbjct: 72 EEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFE 131
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV-VLHYRN-NDHG 177
AI+ PG + IGK + + A + + V++ GHG+G H P VL+Y + D
Sbjct: 132 NAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKT 191
Query: 178 RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
+ IEP ++ + + W T D S AQ EHT+++T+DG + T+
Sbjct: 192 LLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTK 248
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 4 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 63
+G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S+NE
Sbjct: 9 AGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSINEIA 60
Query: 64 CHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
H P D+ L++GD + IDV V+++G+ DT+ T G +DE L++ K+ L+
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAKEALNA 117
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRNNDHGR 178
AISV G+E K++GK I++ + + + GH I R HA + + YR +D+
Sbjct: 118 AISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYV 177
Query: 179 MVLNQTFTIEPMLTIGS 195
+ F IEP TIG+
Sbjct: 178 LKEGDVFAIEPFATIGA 194
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 4 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 63
+G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S+NE
Sbjct: 9 AGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLSINEIA 60
Query: 64 CHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
H P D+ L++GD + IDV V+++G+ DT+ T G +DE L++ K+ L+
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE---LMEAAKEALNA 117
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRV-FHADPVVLH-YRNNDHGR 178
AISV G+E K++GK I++ + + + GH I R HA + + YR +D+
Sbjct: 118 AISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYV 177
Query: 179 MVLNQTFTIEPMLTIGS 195
+ F IEP TIG+
Sbjct: 178 LKEGDVFAIEPFATIGA 194
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 26/218 (11%)
Query: 19 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDT 78
+ G E+ V ++ NGA P F + + + HG+ + +E GD
Sbjct: 151 ITEGKREREVAAKVEYLMKMNGA-EKP----AFDTIIASGHRSALPHGVASDKRIERGDL 205
Query: 79 INIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTI 138
+ ID+ N Y+ D + T G +++ R + ++ + +A+ PGM K++
Sbjct: 206 VVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIA 265
Query: 139 QDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSIN 197
++ Y YG +GHG+G H P + Y D + TIEP + I +
Sbjct: 266 REIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQY---DETVLKEGMVITIEPGIYIPKLG 322
Query: 198 PVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 235
V +D T+LIT +GA+ LT+
Sbjct: 323 GVRIED-----------------TVLITENGAKRLTKT 343
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 22 GITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINI 81
G E+ V ++ NGA P F + + + HG+ + +E GD + I
Sbjct: 157 GKKEREVAAKVEYLMKMNGA-EKP----AFDTIIASGYRSALPHGVASDKRIERGDLVVI 211
Query: 82 DVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDH 141
D+ Y+ D + T G +++ + + ++ + KA+ PG+ K++ ++
Sbjct: 212 DLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNI 271
Query: 142 ADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVM 200
Y YG +GHG+G H P V Y D + TIEP + I I V
Sbjct: 272 IAEYGYGEYFNHSLGHGVGLEVHEWPRVSQY---DETVLREGMVITIEPGIYIPKIGGVR 328
Query: 201 WDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 235
+D TILIT++G++ LT+
Sbjct: 329 IED-----------------TILITKNGSKRLTKT 346
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 14/216 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
++ + ++A E+ + ++PG++ E+ + + GA S F V + +
Sbjct: 139 LKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDIIVASGLR 193
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+ HG+ + +E GD + +D Y GY D + T G+ D+ + + + + +
Sbjct: 194 SALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLR 253
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYG-VVRQFVGHGIGRVFHADPVVLHYRNNDHGRM 179
++ G+ ++ +D+ YG GHGIG H P L +R++
Sbjct: 254 GVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHGIGLEIHEAP-GLAFRSD----T 308
Query: 180 VLN--QTFTIEPMLTIGSINPVMWDDNWTIVTEDGS 213
VL T+EP + I I V +D+ IVT +G+
Sbjct: 309 VLEPGMAVTVEPGIYIPGIGGVRIEDD-IIVTSEGN 343
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 22/231 (9%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI--IDNGAYPSPLGYGGFPKSVCTS 58
M + R+A +V E T G+ E+ + +I + +G P+ V +
Sbjct: 140 MEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEPI--------VASG 191
Query: 59 VNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
N H P R + GD I +D GY D + T G++D+ + +V KD
Sbjct: 192 ENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQ 251
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYRNND 175
A G++ K + ++ + YG F+ GHG+G H +P +
Sbjct: 252 ESAFKAVREGIKAKDVDSRAREVISKAGYG--EYFIHRTGHGLGLDVHEEPYI-----GP 304
Query: 176 HGRMVLNQ--TFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILI 224
G ++L TFTIEP + + + V +D+ + G + E ++I
Sbjct: 305 DGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGRRLTKAERELII 355
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 32/219 (14%)
Query: 19 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDT 78
++ G+T EI + + GA F V + + HG + +E GD
Sbjct: 160 IRAGMTEKEIAALLEYTMRKEGAEGV-----AFDTIVASGCRSALPHGKASDKVVERGDV 214
Query: 79 INIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTI 138
I ID Y D + G+ DE + + + + +A+ + G+ K +
Sbjct: 215 IVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVA 274
Query: 139 QDHADRYNYGVVRQF----VGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIG 194
++ YG +F +GHGIG H P + +RN+ + N FT+EP + +
Sbjct: 275 REFIREKGYG---EFFGHSLGHGIGLEVHEGPAI-SFRNDSP--LPENVVFTVEPGIYL- 327
Query: 195 SINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
+G + E +++ G EILT
Sbjct: 328 ----------------EGKFGIRIEEDVVLKEQGCEILT 350
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 65 HGIPDSRALEDGDTINIDVT-VYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHKAIS 123
HG D R L+ GD + +D+ Y GY+ D++ T+ GD + + A+
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 124 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFV---GHGIGRVFHADPVVLHYRNNDHGRMV 180
PG+ ++ +D + G+ FV GHGIG H +P ++ + +V
Sbjct: 277 AVRPGVTAAQVDAAARDV--LADAGLAEYFVHRTGHGIGLCVHEEPYIV---AGNELPLV 331
Query: 181 LNQTFTIEPMLTIGSINPVMWD---DNWTIVTEDGSLS 215
F+IEP G P W ++ +VTE+G+LS
Sbjct: 332 AGMAFSIEP----GIYFPGRWGARIEDIVVVTENGALS 365
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 55
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 61 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 115
Query: 56 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 112
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 116 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 170
Query: 113 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 162
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 171 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 230
Query: 163 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
HA V + + RM + + IE + G
Sbjct: 231 HAGKTVPIVKGGEATRMEEGEVYAIETFGSTGK 263
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 55
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 114
Query: 56 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 112
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 115 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 169
Query: 113 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 162
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 170 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 229
Query: 163 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
HA V + + RM + + IE + G
Sbjct: 230 HAGKTVPIIKGGEATRMEEGEVYAIETFGSTGK 262
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 55
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 56 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 112
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 278
Query: 113 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 162
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 279 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
Query: 163 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
HA V + + RM + + IE + G
Sbjct: 339 HAGKTVPIVKGGEATRMEEGEVYAIETFGSTGK 371
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 55
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 56 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 112
S+N C H P D+ L+ D ID +++G D + F + + L+K
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLK 278
Query: 113 VTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGV---------VRQFVGHGIGRV-F 162
KD + I + +G+ IQ+ + Y + +R GH IG+
Sbjct: 279 AVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRI 338
Query: 163 HADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
HA V + + RM + + IE + G
Sbjct: 339 HAGKTVPIIKGGEATRMEEGEVYAIETFGSTGK 371
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 50 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 101
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF G
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQG 125
Query: 102 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIG- 159
V +++K C A+ + PG + ++ + A +N + + H +
Sbjct: 126 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 185
Query: 160 ------RVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
+ +P ++++ +++ + ++ +++ G
Sbjct: 186 HVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGE 227
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 101
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 132
Query: 102 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIG- 159
V +++K C A+ + PG + ++ + A +N + + H +
Sbjct: 133 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 192
Query: 160 ------RVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
+ +P ++++ +++ + ++ +++ G
Sbjct: 193 HVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGE 234
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG---- 101
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQG 139
Query: 102 -DVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIG- 159
V +++K C A+ + PG + ++ + A +N + + H +
Sbjct: 140 TQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQ 199
Query: 160 ------RVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
+ +P ++++ +++ + ++ +++ G
Sbjct: 200 HVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGE 241
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI + + DGD + ID GY GD + TF G R + + + L
Sbjct: 238 NGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + I GY GD + TF G R + + + L
Sbjct: 238 NGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCL 118
N CI H + + DGD + ID GY G + TF G R + + + L
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 119 HKAISVCAPG 128
++ + PG
Sbjct: 298 ETSLRLYRPG 307
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVCTSV 59
+R +G + A A +PG+ ++ +H +GA YPS + V +
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPS------YNTIVGSGE 237
Query: 60 NECICHGIPDS-RALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDC 117
N CI H + + DGD + ID GY GD + TF G R + + +
Sbjct: 238 NGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLES 297
Query: 118 LHKAISVCAPG 128
L ++ + PG
Sbjct: 298 LETSLRLYRPG 308
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 49/211 (23%)
Query: 44 SPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFC-GD 102
S + + F + + N + H + +++GD + +D+ + Y+ D S TF G
Sbjct: 218 SGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGT 277
Query: 103 VDDEARNLVKVTKDCLHKAISVCAPGMEY---------------KKIGKTIQDHA-DRYN 146
+ + + + L + + PG+++ K +G +D +Y
Sbjct: 278 FSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYY 337
Query: 147 YGVVRQFVG---HGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDD 203
Y V F+G H +G + D V+ + G ++ TIEP L I
Sbjct: 338 YHGVSHFLGLDTHDVGT--YKDRVL------EEGXVI-----TIEPGLYI---------- 374
Query: 204 NWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
E+ S+ + E IL+T+DG E L++
Sbjct: 375 ------EEESIGIRIEDDILVTKDGHENLSK 399
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 57 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 116
+ +N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 117 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFHADPVVLHYRNND 175
+ + PG I + + + +++ R F GH G + HY +
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFG-------TLSHYYGRE 335
Query: 176 HGRMVLNQTFTI-EPMLTIGSINPVMWDDNWTIVTEDGSLSA--QFEHTILI-TRDGAEI 231
G + T+ EP + + S+ P+ I+ +G A EH ILI +GAE
Sbjct: 336 AGLELREDIDTVLEPGMVV-SMEPM-------IMLPEGLPGAGGYREHDILIVNENGAEN 387
Query: 232 LTQ 234
+T+
Sbjct: 388 ITK 390
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 57 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 116
+ +N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVE 282
Query: 117 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFHADPVVLHYRNND 175
+ + PG I + + + +++ R F GH G + HY +
Sbjct: 283 VHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFG-------TLSHYYGRE 335
Query: 176 HGRMVLNQTFTI-EPMLTIGSINPVMWDDNWTIVTEDGSLSA--QFEHTILI-TRDGAEI 231
G + T+ EP + + S+ P+ I+ +G A EH ILI +GAE
Sbjct: 336 AGLELREDIDTVLEPGMVV-SMEPM-------IMLPEGLPGAGGYREHDILIVNENGAEN 387
Query: 232 LTQ 234
+T+
Sbjct: 388 ITK 390
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 17/174 (9%)
Query: 57 TSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKD 116
+ +N H R + GD ++++ + GY+ T F V D + +
Sbjct: 223 SGINTDGAHNPVTXRVVXRGDILSLNCFPMIFGYYTALERTLFLXXVXDASLXIWXKNTA 282
Query: 117 CLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDH 176
+ + + PG K I + ++ R F G+G H+ V+ HY +
Sbjct: 283 VHRRGLXLIKPGARCKDIASELNXMYRXWDLLRYRTF-GYG-----HSFGVLXHYYGREA 336
Query: 177 GRMVLNQTFTI-EPMLTIGSINPVMWDDNWTIVTEDGSLSA--QFEHTILITRD 227
G + T+ EP + + S+ P+ ++ +G A EH IL+ ++
Sbjct: 337 GVELREDIXTVLEPGMVV-SMEPM-------VMXPEGEPGAGGYREHDILVIKE 382
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 211 DGSLSAQFEHTILITRDGAEILTQ 234
DG AQFEHT+ ++ G E+LT+
Sbjct: 331 DGCKVAQFEHTVYLSEHGKEVLTR 354
>pdb|3R3E|A Chain A, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|3R3E|B Chain B, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|4G0I|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0I|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0K|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0K|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0L|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
pdb|4G0L|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
Length = 328
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 176 HGRMVLNQTFTIEPMLTIGSINPVMWDDNWTI 207
H +++ + +EP +++ +NP+M ++ WT
Sbjct: 67 HRTLIMRKLKGLEPFISVSVVNPLMLENGWTF 98
>pdb|4GRH|A Chain A, Crystal Structure Of Pabb Of Stenotrophomonas Maltophilia
Length = 457
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 99 FCGDVDDEARNLVKVTKDCLHKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGI 158
F G R++V + + L +SV A + + I T + +++ VGH
Sbjct: 244 FAGLFSAHGRHVVSSSPERL---VSVHAGHAQTRPIAGTRPRFEGDDDAARIQELVGHPK 300
Query: 159 GRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGS 195
R H +++ ND GR+ L T ++ ++T+ S
Sbjct: 301 ERAEHV--MLIDLERNDLGRICLPGTVVVDELMTVES 335
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 32 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 59
V ++ID G+Y + +GY G FP+S+ SV
Sbjct: 23 VSAVVIDPGSYTTNIGYSGSDFPQSILPSV 52
>pdb|1D2P|A Chain A, Crystal Structure Of Two B Repeat Units (B1b2) Of The
Collagen Binding Protein (Cna) Of Staphylococcus Aureus
Length = 373
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 152 QFVGHGIGRVFHADPVVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDD 203
Q V + + + H NND G ++ +T E T SI +WDD
Sbjct: 152 QQVKYTVEELTKVKGYTTHVDNNDMGNLITTNKYTPE---TTSSIGEKVWDD 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,670,883
Number of Sequences: 62578
Number of extensions: 328544
Number of successful extensions: 862
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 88
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)