Query 026623
Match_columns 235
No_of_seqs 213 out of 1031
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1.3E-67 2.9E-72 499.0 16.0 219 2-222 287-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 2.8E-33 6.1E-38 265.6 9.2 201 7-226 33-264 (506)
3 COG2226 UbiE Methylase involve 99.8 2E-20 4.3E-25 165.2 9.9 115 60-184 36-157 (238)
4 PF01209 Ubie_methyltran: ubiE 99.8 1.7E-19 3.7E-24 158.6 7.5 116 60-184 32-154 (233)
5 PF08241 Methyltransf_11: Meth 99.8 3.2E-19 6.8E-24 131.1 6.4 91 86-181 1-95 (95)
6 PLN02233 ubiquinone biosynthes 99.7 9.4E-18 2E-22 149.2 9.4 100 80-183 72-182 (261)
7 PRK14103 trans-aconitate 2-met 99.7 2.4E-16 5.2E-21 138.8 8.9 106 72-183 20-126 (255)
8 PRK10258 biotin biosynthesis p 99.7 5E-16 1.1E-20 136.0 10.6 104 74-183 35-140 (251)
9 PLN02396 hexaprenyldihydroxybe 99.6 3.5E-16 7.6E-21 143.7 8.9 97 81-183 131-235 (322)
10 PRK05785 hypothetical protein; 99.6 9.1E-16 2E-20 133.9 10.5 106 61-177 35-141 (226)
11 PLN02244 tocopherol O-methyltr 99.6 1.2E-15 2.5E-20 140.6 11.0 99 80-183 117-223 (340)
12 PF13489 Methyltransf_23: Meth 99.6 1.2E-16 2.6E-21 128.4 3.9 96 80-185 21-117 (161)
13 PRK00107 gidB 16S rRNA methylt 99.6 1.6E-14 3.5E-19 123.2 14.7 153 60-223 26-187 (187)
14 PTZ00098 phosphoethanolamine N 99.6 2.6E-15 5.7E-20 133.7 9.6 109 73-184 44-157 (263)
15 TIGR02752 MenG_heptapren 2-hep 99.6 5.9E-15 1.3E-19 127.2 9.9 105 77-184 41-152 (231)
16 TIGR00452 methyltransferase, p 99.6 7.9E-15 1.7E-19 134.4 11.2 121 55-183 97-225 (314)
17 PRK11036 putative S-adenosyl-L 99.6 4.9E-15 1.1E-19 130.6 9.3 106 71-183 35-149 (255)
18 KOG1540 Ubiquinone biosynthesi 99.6 7.7E-15 1.7E-19 130.4 10.1 118 77-197 96-229 (296)
19 PRK15068 tRNA mo(5)U34 methylt 99.6 7.2E-15 1.6E-19 134.8 10.0 108 70-183 111-226 (322)
20 PRK11207 tellurite resistance 99.5 1.7E-14 3.7E-19 123.1 9.0 97 81-182 30-133 (197)
21 TIGR00477 tehB tellurite resis 99.5 2E-14 4.4E-19 122.4 8.4 96 82-182 31-132 (195)
22 PRK01683 trans-aconitate 2-met 99.5 2.9E-14 6.2E-19 125.2 9.5 106 73-183 23-130 (258)
23 PLN02336 phosphoethanolamine N 99.5 2.7E-14 5.9E-19 136.0 9.5 101 78-183 263-369 (475)
24 PF12847 Methyltransf_18: Meth 99.5 1.1E-14 2.3E-19 111.3 5.4 100 82-183 2-111 (112)
25 TIGR02072 BioC biotin biosynth 99.5 7.4E-14 1.6E-18 119.1 10.8 98 82-183 35-135 (240)
26 PRK12335 tellurite resistance 99.5 7.2E-14 1.6E-18 125.6 11.1 118 82-206 121-258 (287)
27 PRK08317 hypothetical protein; 99.5 8.2E-14 1.8E-18 118.5 10.3 104 77-183 15-124 (241)
28 smart00138 MeTrc Methyltransfe 99.5 7.2E-14 1.6E-18 124.8 10.3 131 53-185 70-244 (264)
29 PF08242 Methyltransf_12: Meth 99.5 7.4E-15 1.6E-19 110.8 2.3 90 86-179 1-99 (99)
30 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.7E-14 7.9E-19 125.0 7.0 97 81-183 59-161 (243)
31 PRK11873 arsM arsenite S-adeno 99.5 6.9E-14 1.5E-18 124.0 8.6 99 81-183 77-183 (272)
32 PF13649 Methyltransf_25: Meth 99.5 7.2E-15 1.6E-19 111.7 1.5 92 85-177 1-101 (101)
33 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.6E-14 1.4E-18 123.3 7.5 98 81-183 56-164 (247)
34 PF13847 Methyltransf_31: Meth 99.5 7.2E-14 1.6E-18 113.6 6.5 100 82-185 4-112 (152)
35 PRK11088 rrmA 23S rRNA methylt 99.5 1.4E-13 3E-18 122.6 8.4 104 81-194 85-193 (272)
36 PF02353 CMAS: Mycolic acid cy 99.5 1.7E-13 3.7E-18 123.2 9.0 128 52-183 32-166 (273)
37 smart00828 PKS_MT Methyltransf 99.5 1.6E-13 3.4E-18 117.8 8.3 97 83-184 1-105 (224)
38 PRK06202 hypothetical protein; 99.5 2.5E-13 5.4E-18 117.9 9.6 102 80-184 59-167 (232)
39 PRK11705 cyclopropane fatty ac 99.5 2.7E-13 5.9E-18 127.1 10.4 108 70-183 156-267 (383)
40 PF07021 MetW: Methionine bios 99.5 9.6E-14 2.1E-18 118.9 6.5 97 76-182 10-108 (193)
41 TIGR00740 methyltransferase, p 99.5 1.2E-13 2.5E-18 120.5 7.1 101 81-184 53-162 (239)
42 TIGR00138 gidB 16S rRNA methyl 99.4 7E-13 1.5E-17 112.3 10.7 126 61-198 25-157 (181)
43 TIGR03587 Pse_Me-ase pseudamin 99.4 4.8E-13 1E-17 115.3 9.7 96 82-183 44-142 (204)
44 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.1E-13 6.6E-18 125.2 8.5 118 81-203 113-252 (340)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.2E-12 2.6E-17 110.8 10.2 104 77-183 35-143 (223)
46 PLN02336 phosphoethanolamine N 99.4 6.8E-13 1.5E-17 126.4 8.5 107 73-183 29-142 (475)
47 TIGR00537 hemK_rel_arch HemK-r 99.4 4.8E-12 1E-16 105.8 12.5 120 82-206 20-164 (179)
48 PRK06922 hypothetical protein; 99.4 5E-13 1.1E-17 132.1 7.4 103 81-184 418-538 (677)
49 PRK00121 trmB tRNA (guanine-N( 99.4 1.1E-12 2.3E-17 112.6 8.4 122 81-203 40-177 (202)
50 PF05401 NodS: Nodulation prot 99.4 1.2E-12 2.7E-17 112.6 8.6 141 76-221 38-193 (201)
51 COG4976 Predicted methyltransf 99.4 1.6E-13 3.6E-18 120.5 3.1 140 78-223 122-286 (287)
52 PRK11188 rrmJ 23S rRNA methylt 99.4 2.6E-12 5.7E-17 111.0 10.5 136 81-222 51-206 (209)
53 PRK00216 ubiE ubiquinone/menaq 99.4 3.8E-12 8.3E-17 108.9 10.0 100 81-183 51-158 (239)
54 KOG1270 Methyltransferases [Co 99.3 1.5E-12 3.2E-17 116.1 6.6 96 82-183 90-195 (282)
55 TIGR00438 rrmJ cell division p 99.3 3.3E-12 7.1E-17 107.7 8.4 137 81-221 32-186 (188)
56 TIGR02081 metW methionine bios 99.3 4E-12 8.6E-17 107.7 8.5 97 73-176 7-105 (194)
57 PF03848 TehB: Tellurite resis 99.3 4.4E-12 9.5E-17 109.0 8.6 97 81-182 30-132 (192)
58 TIGR02021 BchM-ChlM magnesium 99.3 6.7E-12 1.4E-16 107.9 9.3 97 81-184 55-159 (219)
59 PRK00517 prmA ribosomal protei 99.3 1.4E-11 3E-16 108.7 11.2 117 81-206 119-237 (250)
60 COG2230 Cfa Cyclopropane fatty 99.3 8.1E-12 1.8E-16 112.9 9.8 129 52-183 42-176 (283)
61 TIGR00406 prmA ribosomal prote 99.3 9.5E-12 2.1E-16 112.2 9.9 114 82-204 160-280 (288)
62 COG4106 Tam Trans-aconitate me 99.3 7.6E-12 1.7E-16 109.2 8.8 147 72-227 21-191 (257)
63 PF08003 Methyltransf_9: Prote 99.3 9.1E-12 2E-16 113.4 9.0 107 70-182 104-218 (315)
64 PRK08287 cobalt-precorrin-6Y C 99.3 2.5E-11 5.4E-16 102.1 10.7 116 77-201 27-150 (187)
65 PRK04266 fibrillarin; Provisio 99.3 6.3E-11 1.4E-15 103.9 13.3 140 77-223 68-226 (226)
66 TIGR02469 CbiT precorrin-6Y C5 99.3 1.9E-11 4.1E-16 94.2 8.8 99 77-182 15-121 (124)
67 PRK14968 putative methyltransf 99.3 6.7E-11 1.4E-15 98.0 11.5 136 81-221 23-187 (188)
68 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.8E-11 3.9E-16 104.1 7.9 120 82-202 17-153 (194)
69 PRK07580 Mg-protoporphyrin IX 99.2 5.4E-11 1.2E-15 102.0 10.8 99 80-182 62-165 (230)
70 TIGR02716 C20_methyl_CrtF C-20 99.2 2.9E-11 6.3E-16 109.2 8.7 103 77-183 145-254 (306)
71 TIGR01983 UbiG ubiquinone bios 99.2 2.8E-11 6E-16 103.6 8.1 97 82-184 46-150 (224)
72 PRK09489 rsmC 16S ribosomal RN 99.2 7.5E-11 1.6E-15 109.3 11.3 132 82-223 197-337 (342)
73 PRK13944 protein-L-isoaspartat 99.2 3E-11 6.5E-16 103.7 8.0 103 73-184 64-174 (205)
74 KOG4300 Predicted methyltransf 99.2 4.9E-11 1.1E-15 103.6 9.0 116 65-185 55-184 (252)
75 PRK00377 cbiT cobalt-precorrin 99.2 1.3E-10 2.9E-15 98.9 11.5 146 50-203 9-166 (198)
76 PRK05134 bifunctional 3-demeth 99.2 5.6E-11 1.2E-15 102.7 8.8 100 79-184 46-152 (233)
77 KOG1541 Predicted protein carb 99.2 1.4E-10 3.1E-15 101.6 11.0 141 77-220 46-201 (270)
78 PRK15001 SAM-dependent 23S rib 99.2 1.4E-10 3E-15 108.9 11.4 138 74-222 221-373 (378)
79 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.1E-10 2.5E-15 101.3 9.0 97 82-182 35-151 (213)
80 PLN02232 ubiquinone biosynthes 99.2 4.7E-11 1E-15 98.8 5.9 72 110-184 1-82 (160)
81 TIGR00080 pimt protein-L-isoas 99.1 2.1E-10 4.5E-15 98.8 8.6 102 73-183 69-177 (215)
82 PRK13942 protein-L-isoaspartat 99.1 2.2E-10 4.8E-15 98.9 8.3 102 73-183 68-176 (212)
83 KOG3010 Methyltransferase [Gen 99.1 7.8E-11 1.7E-15 104.1 5.5 113 82-201 34-158 (261)
84 PRK09328 N5-glutamine S-adenos 99.1 1.3E-09 2.8E-14 96.1 13.1 136 81-222 108-275 (275)
85 PLN03075 nicotianamine synthas 99.1 1.2E-09 2.6E-14 99.5 13.0 138 81-224 123-276 (296)
86 PRK13255 thiopurine S-methyltr 99.1 3E-10 6.6E-15 99.0 8.7 96 82-181 38-153 (218)
87 PRK14121 tRNA (guanine-N(7)-)- 99.1 4E-10 8.7E-15 106.1 9.9 122 80-202 121-256 (390)
88 TIGR03438 probable methyltrans 99.1 3.5E-10 7.6E-15 102.6 8.4 125 53-182 38-176 (301)
89 PLN02585 magnesium protoporphy 99.1 4.1E-10 8.9E-15 103.4 8.8 96 81-181 144-248 (315)
90 TIGR00536 hemK_fam HemK family 99.1 1.2E-09 2.7E-14 98.2 11.7 135 83-223 116-283 (284)
91 PRK14967 putative methyltransf 99.1 1.7E-09 3.7E-14 93.7 11.5 120 81-203 36-180 (223)
92 TIGR03534 RF_mod_PrmC protein- 99.1 1.2E-09 2.7E-14 94.6 10.6 119 82-202 88-236 (251)
93 cd02440 AdoMet_MTases S-adenos 99.0 6.7E-10 1.4E-14 80.1 7.2 95 84-182 1-103 (107)
94 PTZ00146 fibrillarin; Provisio 99.0 3.3E-09 7.2E-14 96.5 12.9 99 79-182 130-236 (293)
95 TIGR01177 conserved hypothetic 99.0 7.5E-10 1.6E-14 101.5 8.4 118 78-200 179-309 (329)
96 PRK07402 precorrin-6B methylas 99.0 2.5E-09 5.5E-14 90.6 10.4 114 77-198 36-158 (196)
97 TIGR03533 L3_gln_methyl protei 99.0 4.7E-09 1E-13 94.8 12.0 122 82-207 122-274 (284)
98 PF05175 MTS: Methyltransferas 99.0 1.9E-09 4.1E-14 89.9 8.5 100 81-183 31-140 (170)
99 PF06325 PrmA: Ribosomal prote 98.9 2.4E-09 5.2E-14 97.6 8.4 151 55-223 139-295 (295)
100 COG2264 PrmA Ribosomal protein 98.9 1.3E-08 2.9E-13 92.8 12.5 120 81-208 162-289 (300)
101 PRK00312 pcm protein-L-isoaspa 98.9 5.1E-09 1.1E-13 89.7 9.1 99 73-184 70-176 (212)
102 PRK14966 unknown domain/N5-glu 98.9 9.7E-09 2.1E-13 97.6 11.7 137 82-223 252-419 (423)
103 PF05219 DREV: DREV methyltran 98.9 5.7E-09 1.2E-13 93.3 9.3 91 81-182 94-187 (265)
104 PF13659 Methyltransf_26: Meth 98.9 6.7E-10 1.5E-14 85.5 3.0 99 83-183 2-115 (117)
105 PRK14901 16S rRNA methyltransf 98.9 1.9E-08 4.1E-13 95.7 13.0 126 77-202 248-408 (434)
106 PRK11805 N5-glutamine S-adenos 98.9 1.3E-08 2.8E-13 93.0 11.2 112 83-198 135-277 (307)
107 PF05148 Methyltransf_8: Hypot 98.9 9.7E-09 2.1E-13 89.4 9.7 111 82-208 73-186 (219)
108 COG2890 HemK Methylase of poly 98.9 1.2E-08 2.5E-13 92.3 10.2 134 84-222 113-276 (280)
109 TIGR00563 rsmB ribosomal RNA s 98.9 9.6E-09 2.1E-13 97.4 9.3 106 77-183 234-368 (426)
110 KOG2361 Predicted methyltransf 98.9 9.1E-09 2E-13 91.1 8.4 100 84-184 74-184 (264)
111 PRK01544 bifunctional N5-gluta 98.9 1.5E-08 3.2E-13 98.4 10.6 134 82-221 139-305 (506)
112 COG4123 Predicted O-methyltran 98.9 3.6E-08 7.8E-13 87.8 12.1 121 82-203 45-190 (248)
113 TIGR03704 PrmC_rel_meth putati 98.9 1.4E-08 3.1E-13 90.1 9.6 126 82-209 87-242 (251)
114 PRK04457 spermidine synthase; 98.8 3.4E-08 7.4E-13 88.3 11.2 137 81-222 66-216 (262)
115 PF01739 CheR: CheR methyltran 98.8 1.1E-08 2.4E-13 88.1 6.9 127 56-185 5-177 (196)
116 PRK14903 16S rRNA methyltransf 98.8 1.2E-08 2.7E-13 97.1 7.7 107 77-183 233-366 (431)
117 PRK10901 16S rRNA methyltransf 98.8 2.7E-08 5.9E-13 94.4 9.5 106 77-183 240-372 (427)
118 PF00891 Methyltransf_2: O-met 98.8 1.6E-08 3.6E-13 88.1 6.9 101 76-183 95-199 (241)
119 PRK14904 16S rRNA methyltransf 98.7 1.6E-08 3.4E-13 96.6 6.9 106 77-183 246-377 (445)
120 PRK13943 protein-L-isoaspartat 98.7 3.4E-08 7.5E-13 91.0 8.9 101 74-183 73-180 (322)
121 PRK00811 spermidine synthase; 98.7 1.3E-07 2.8E-12 85.4 12.0 103 80-183 75-191 (283)
122 TIGR00446 nop2p NOL1/NOP2/sun 98.7 3.9E-08 8.5E-13 87.7 8.5 107 77-183 67-199 (264)
123 PRK14902 16S rRNA methyltransf 98.7 4.9E-08 1.1E-12 93.0 9.1 107 77-183 246-379 (444)
124 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.4E-08 7.4E-13 99.3 8.3 119 82-205 539-678 (702)
125 PF03291 Pox_MCEL: mRNA cappin 98.7 1.6E-08 3.6E-13 93.4 5.0 103 81-185 62-188 (331)
126 PRK01581 speE spermidine synth 98.7 1.6E-07 3.5E-12 88.0 11.3 145 80-225 149-316 (374)
127 smart00650 rADc Ribosomal RNA 98.7 4.8E-08 1E-12 81.0 6.4 103 74-183 6-113 (169)
128 TIGR00417 speE spermidine synt 98.7 3.3E-07 7.1E-12 82.0 11.9 103 79-183 70-186 (270)
129 PF01728 FtsJ: FtsJ-like methy 98.6 1.4E-07 3.1E-12 78.7 8.9 143 77-222 19-180 (181)
130 KOG3045 Predicted RNA methylas 98.6 4.3E-07 9.3E-12 81.6 11.8 109 82-208 181-292 (325)
131 COG2813 RsmC 16S RNA G1207 met 98.6 1.9E-07 4.2E-12 85.1 9.4 118 74-195 151-280 (300)
132 KOG1271 Methyltransferases [Ge 98.6 1.1E-07 2.5E-12 81.5 7.3 110 83-194 69-192 (227)
133 COG0500 SmtA SAM-dependent met 98.6 3.5E-07 7.6E-12 67.2 8.1 94 85-185 52-157 (257)
134 PHA03411 putative methyltransf 98.6 1.6E-07 3.6E-12 84.9 7.3 99 82-182 65-182 (279)
135 PRK03612 spermidine synthase; 98.6 3E-07 6.5E-12 89.6 9.5 123 81-204 297-441 (521)
136 PF02390 Methyltransf_4: Putat 98.5 3E-07 6.5E-12 78.9 7.9 121 82-203 18-156 (195)
137 PF01135 PCMT: Protein-L-isoas 98.5 1.2E-07 2.7E-12 82.3 4.6 105 70-184 61-173 (209)
138 PRK13256 thiopurine S-methyltr 98.5 2.7E-07 5.8E-12 81.3 6.5 98 81-182 43-162 (226)
139 PLN02366 spermidine synthase 98.5 4.6E-07 1E-11 83.1 8.1 101 80-182 90-205 (308)
140 TIGR00478 tly hemolysin TlyA f 98.5 9.9E-07 2.1E-11 77.7 9.5 107 81-203 75-213 (228)
141 KOG2940 Predicted methyltransf 98.5 1.2E-07 2.6E-12 84.0 3.6 97 81-182 72-173 (325)
142 KOG1331 Predicted methyltransf 98.5 1.3E-07 2.9E-12 85.4 3.9 96 82-182 46-142 (293)
143 PRK10611 chemotaxis methyltran 98.4 1.1E-06 2.3E-11 80.0 9.4 122 55-184 95-263 (287)
144 KOG1269 SAM-dependent methyltr 98.4 3.9E-07 8.5E-12 85.4 6.2 97 82-183 111-215 (364)
145 COG2242 CobL Precorrin-6B meth 98.4 5.5E-06 1.2E-10 71.0 12.4 121 74-203 27-157 (187)
146 PRK13168 rumA 23S rRNA m(5)U19 98.4 4.8E-06 1E-10 79.4 13.4 142 70-222 286-442 (443)
147 PRK15128 23S rRNA m(5)C1962 me 98.4 9.6E-07 2.1E-11 83.6 8.4 119 82-203 221-365 (396)
148 PRK03522 rumB 23S rRNA methylu 98.4 3.1E-06 6.7E-11 77.3 10.6 130 81-222 173-314 (315)
149 PF05891 Methyltransf_PK: AdoM 98.3 5.5E-07 1.2E-11 78.8 5.0 102 81-185 55-163 (218)
150 PHA03412 putative methyltransf 98.3 2.1E-06 4.5E-11 76.3 7.5 96 82-178 50-158 (241)
151 PF06080 DUF938: Protein of un 98.3 2.8E-06 6E-11 73.8 8.0 133 84-222 28-204 (204)
152 PLN02781 Probable caffeoyl-CoA 98.3 9.4E-07 2E-11 77.7 4.9 96 80-182 67-177 (234)
153 TIGR00479 rumA 23S rRNA (uraci 98.3 4.2E-06 9.2E-11 79.3 9.7 121 73-203 284-416 (431)
154 COG1352 CheR Methylase of chem 98.3 5E-06 1.1E-10 75.0 9.3 128 55-185 70-243 (268)
155 PF02527 GidB: rRNA small subu 98.2 7.4E-06 1.6E-10 70.0 9.4 133 59-203 27-171 (184)
156 KOG1975 mRNA cap methyltransfe 98.2 3.1E-06 6.6E-11 78.1 7.3 112 80-193 116-249 (389)
157 COG2519 GCD14 tRNA(1-methylade 98.2 1.9E-05 4.1E-10 70.6 11.0 113 77-200 90-213 (256)
158 PF10294 Methyltransf_16: Puta 98.2 5E-06 1.1E-10 69.8 6.9 121 59-183 17-156 (173)
159 PLN02672 methionine S-methyltr 98.2 8.8E-06 1.9E-10 85.3 9.7 120 82-202 119-298 (1082)
160 PF05724 TPMT: Thiopurine S-me 98.1 5.2E-06 1.1E-10 72.6 6.4 122 78-204 34-187 (218)
161 COG0220 Predicted S-adenosylme 98.1 9.9E-06 2.1E-10 71.4 7.7 113 83-196 50-179 (227)
162 COG2518 Pcm Protein-L-isoaspar 98.1 1.3E-05 2.7E-10 70.0 8.1 99 73-184 64-170 (209)
163 TIGR02085 meth_trns_rumB 23S r 98.1 1.8E-05 3.9E-10 74.2 9.6 109 82-203 234-352 (374)
164 PF12147 Methyltransf_20: Puta 98.0 5.2E-05 1.1E-09 69.2 11.3 125 80-204 134-276 (311)
165 COG2521 Predicted archaeal met 98.0 1.5E-05 3.4E-10 70.8 7.3 125 77-204 130-274 (287)
166 PRK01544 bifunctional N5-gluta 98.0 1.8E-05 4E-10 77.0 8.1 120 81-201 347-482 (506)
167 PRK04148 hypothetical protein; 98.0 2.3E-05 5E-10 63.9 6.9 93 77-182 12-108 (134)
168 PRK10909 rsmD 16S rRNA m(2)G96 98.0 1.9E-05 4.1E-10 68.1 6.5 97 82-185 54-161 (199)
169 PRK00274 ksgA 16S ribosomal RN 97.9 1.4E-05 2.9E-10 71.7 5.2 73 77-152 38-114 (272)
170 PF05185 PRMT5: PRMT5 arginine 97.9 3.4E-05 7.3E-10 74.2 8.2 144 30-180 131-294 (448)
171 KOG1499 Protein arginine N-met 97.9 1.7E-05 3.6E-10 73.7 5.7 100 81-182 60-166 (346)
172 KOG2904 Predicted methyltransf 97.9 0.00031 6.6E-09 63.9 13.0 155 59-222 129-327 (328)
173 PLN02476 O-methyltransferase 97.9 0.00013 2.7E-09 66.3 10.7 131 80-223 117-278 (278)
174 COG4122 Predicted O-methyltran 97.9 6.8E-05 1.5E-09 65.9 8.7 97 80-183 58-166 (219)
175 COG1189 Predicted rRNA methyla 97.9 0.00016 3.4E-09 64.3 10.9 134 81-222 79-241 (245)
176 COG0357 GidB Predicted S-adeno 97.8 0.0004 8.7E-09 60.9 12.3 152 58-220 45-209 (215)
177 KOG2899 Predicted methyltransf 97.8 6.2E-05 1.4E-09 67.3 7.1 102 81-183 58-209 (288)
178 PRK14896 ksgA 16S ribosomal RN 97.8 4.2E-05 9E-10 68.0 6.0 69 80-153 28-101 (258)
179 PLN02823 spermine synthase 97.8 0.00043 9.3E-09 64.4 12.6 100 81-182 103-219 (336)
180 PF11968 DUF3321: Putative met 97.8 4.8E-05 1E-09 66.7 5.9 125 83-222 53-192 (219)
181 PF01596 Methyltransf_3: O-met 97.7 9.3E-05 2E-09 64.2 7.1 130 81-223 45-205 (205)
182 TIGR00755 ksgA dimethyladenosi 97.7 0.00021 4.6E-09 63.1 9.5 71 77-152 25-103 (253)
183 PRK11933 yebU rRNA (cytosine-C 97.7 0.00013 2.8E-09 70.7 8.5 106 78-183 110-242 (470)
184 COG4627 Uncharacterized protei 97.7 1.2E-05 2.6E-10 67.4 0.8 45 137-182 41-85 (185)
185 COG1092 Predicted SAM-dependen 97.7 0.0001 2.2E-09 69.9 6.9 124 57-185 196-338 (393)
186 PF09243 Rsm22: Mitochondrial 97.6 0.00051 1.1E-08 61.9 10.3 121 80-204 32-165 (274)
187 PF01170 UPF0020: Putative RNA 97.6 9.1E-05 2E-09 62.6 4.9 123 77-203 24-167 (179)
188 PF08704 GCD14: tRNA methyltra 97.6 0.00021 4.5E-09 63.8 7.0 117 76-201 35-165 (247)
189 PF07942 N2227: N2227-like pro 97.5 0.0006 1.3E-08 61.7 9.0 117 81-204 56-239 (270)
190 COG2263 Predicted RNA methylas 97.5 0.00066 1.4E-08 58.6 8.6 95 54-154 22-119 (198)
191 PRK00536 speE spermidine synth 97.5 0.00087 1.9E-08 60.4 9.6 94 77-183 68-171 (262)
192 TIGR03439 methyl_EasF probable 97.4 0.00071 1.5E-08 62.5 9.0 125 52-182 50-196 (319)
193 PRK11760 putative 23S rRNA C24 97.4 0.0027 5.8E-08 59.4 12.3 90 81-182 211-304 (357)
194 TIGR00095 RNA methyltransferas 97.3 0.0007 1.5E-08 57.7 7.1 98 82-185 50-161 (189)
195 TIGR02143 trmA_only tRNA (urac 97.3 0.00085 1.9E-08 62.5 8.2 124 84-221 200-351 (353)
196 KOG3178 Hydroxyindole-O-methyl 97.3 0.00071 1.5E-08 63.0 7.3 100 81-184 177-276 (342)
197 KOG3987 Uncharacterized conser 97.3 9.1E-05 2E-09 65.1 1.3 91 81-182 112-206 (288)
198 KOG1661 Protein-L-isoaspartate 97.3 0.00049 1.1E-08 60.4 5.8 95 81-184 82-194 (237)
199 COG1041 Predicted DNA modifica 97.3 0.0017 3.8E-08 60.5 9.6 116 80-203 196-326 (347)
200 COG3963 Phospholipid N-methylt 97.2 0.00091 2E-08 56.9 6.7 110 73-183 40-156 (194)
201 PTZ00338 dimethyladenosine tra 97.2 0.00051 1.1E-08 62.6 5.4 71 78-153 33-111 (294)
202 PRK04338 N(2),N(2)-dimethylgua 97.2 0.00045 9.9E-09 65.2 5.0 92 83-182 59-157 (382)
203 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0023 5E-08 59.8 9.5 125 83-221 208-360 (362)
204 PRK00050 16S rRNA m(4)C1402 me 97.2 0.00036 7.9E-09 63.8 3.8 82 73-154 11-101 (296)
205 COG0421 SpeE Spermidine syntha 97.2 0.0085 1.9E-07 54.5 12.6 140 78-221 73-235 (282)
206 PRK11727 23S rRNA mA1618 methy 97.1 0.0017 3.8E-08 60.0 8.1 73 80-154 113-200 (321)
207 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.00054 1.2E-08 61.6 4.1 103 78-182 53-198 (256)
208 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0064 1.4E-07 54.8 9.8 147 77-223 42-233 (311)
209 PF10672 Methyltrans_SAM: S-ad 96.9 0.0037 7.9E-08 57.0 8.1 118 55-185 106-240 (286)
210 PF02475 Met_10: Met-10+ like- 96.9 0.0014 3.1E-08 56.8 5.0 90 82-180 102-199 (200)
211 PLN02589 caffeoyl-CoA O-methyl 96.9 0.0016 3.5E-08 58.1 5.1 97 80-183 78-190 (247)
212 KOG3191 Predicted N6-DNA-methy 96.8 0.039 8.5E-07 47.7 12.8 128 77-206 39-192 (209)
213 COG0293 FtsJ 23S rRNA methylas 96.8 0.002 4.2E-08 56.2 4.9 138 82-222 46-200 (205)
214 PF01564 Spermine_synth: Sperm 96.7 0.022 4.8E-07 50.5 11.3 143 81-224 76-239 (246)
215 KOG1500 Protein arginine N-met 96.7 0.0043 9.3E-08 58.2 6.6 119 80-202 176-308 (517)
216 TIGR02987 met_A_Alw26 type II 96.7 0.023 4.9E-07 55.4 11.9 42 82-123 32-81 (524)
217 PRK13699 putative methylase; P 96.7 0.0028 6E-08 55.7 5.1 22 162-183 51-72 (227)
218 COG0144 Sun tRNA and rRNA cyto 96.5 0.012 2.7E-07 54.9 8.6 107 77-183 152-288 (355)
219 KOG3115 Methyltransferase-like 96.5 0.0055 1.2E-07 53.8 5.7 100 83-185 62-185 (249)
220 KOG2352 Predicted spermine/spe 96.5 0.014 3.1E-07 56.6 9.1 99 84-184 51-162 (482)
221 COG5459 Predicted rRNA methyla 96.4 0.0081 1.8E-07 56.6 6.4 101 81-183 113-225 (484)
222 PF01269 Fibrillarin: Fibrilla 96.1 0.05 1.1E-06 48.2 9.5 98 78-182 70-177 (229)
223 PF03602 Cons_hypoth95: Conser 96.1 0.0039 8.4E-08 53.1 2.5 99 81-185 42-155 (183)
224 PLN02668 indole-3-acetate carb 96.1 0.03 6.6E-07 53.1 8.6 18 140-157 158-176 (386)
225 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.011 2.3E-07 55.9 5.1 93 83-182 46-146 (374)
226 PF05958 tRNA_U5-meth_tr: tRNA 95.9 0.082 1.8E-06 49.3 10.7 140 70-223 186-352 (352)
227 PF13679 Methyltransf_32: Meth 95.9 0.017 3.7E-07 46.6 5.2 43 80-124 24-72 (141)
228 PF08123 DOT1: Histone methyla 95.8 0.022 4.7E-07 49.5 6.1 120 48-182 15-157 (205)
229 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.8 0.0065 1.4E-07 55.0 2.6 127 77-203 81-244 (283)
230 KOG2793 Putative N2,N2-dimethy 95.7 0.07 1.5E-06 47.8 9.0 96 81-183 86-199 (248)
231 PF03269 DUF268: Caenorhabditi 95.6 0.0093 2E-07 50.5 2.9 44 140-183 60-111 (177)
232 COG2265 TrmA SAM-dependent met 95.6 0.05 1.1E-06 52.4 8.3 109 70-188 282-401 (432)
233 COG4798 Predicted methyltransf 95.6 0.041 8.9E-07 48.1 6.8 111 73-184 40-167 (238)
234 KOG4589 Cell division protein 95.5 0.038 8.2E-07 48.1 6.2 133 81-223 69-226 (232)
235 KOG1122 tRNA and rRNA cytosine 95.4 0.066 1.4E-06 51.4 7.8 102 77-183 237-371 (460)
236 PF06859 Bin3: Bicoid-interact 95.3 0.0059 1.3E-07 48.3 0.5 60 143-202 1-71 (110)
237 PRK11524 putative methyltransf 95.2 0.056 1.2E-06 48.7 6.8 25 163-187 60-84 (284)
238 KOG3201 Uncharacterized conser 95.1 0.033 7.1E-07 47.5 4.5 121 81-204 29-163 (201)
239 KOG1709 Guanidinoacetate methy 95.0 0.067 1.5E-06 47.5 6.3 99 80-183 100-206 (271)
240 COG0742 N6-adenine-specific me 95.0 0.1 2.2E-06 44.9 7.2 101 80-186 42-157 (187)
241 KOG3420 Predicted RNA methylas 95.0 0.077 1.7E-06 44.6 6.2 111 53-171 23-144 (185)
242 COG3897 Predicted methyltransf 94.9 0.083 1.8E-06 46.1 6.6 97 79-185 77-181 (218)
243 KOG1663 O-methyltransferase [S 94.8 0.077 1.7E-06 47.2 6.2 98 78-183 70-183 (237)
244 cd08254 hydroxyacyl_CoA_DH 6-h 94.6 0.16 3.5E-06 45.0 7.9 91 81-182 165-262 (338)
245 PRK11783 rlmL 23S rRNA m(2)G24 94.4 0.15 3.2E-06 51.9 8.0 79 108-186 258-350 (702)
246 COG0030 KsgA Dimethyladenosine 94.4 0.094 2E-06 47.3 5.8 70 77-150 26-102 (259)
247 PF00398 RrnaAD: Ribosomal RNA 94.2 0.058 1.2E-06 48.0 4.1 98 77-183 26-134 (262)
248 PF03492 Methyltransf_7: SAM d 93.9 0.14 3E-06 47.6 6.2 72 81-157 16-121 (334)
249 KOG2539 Mitochondrial/chloropl 93.6 0.11 2.3E-06 50.5 4.9 101 81-184 200-316 (491)
250 COG1889 NOP1 Fibrillarin-like 93.3 1.9 4.2E-05 38.0 11.8 134 78-222 73-228 (231)
251 KOG2798 Putative trehalase [Ca 93.1 0.31 6.8E-06 45.4 7.0 61 142-205 258-335 (369)
252 KOG1099 SAM-dependent methyltr 93.0 0.033 7.2E-07 49.8 0.5 134 82-221 42-203 (294)
253 TIGR01444 fkbM_fam methyltrans 92.9 0.11 2.3E-06 41.1 3.2 39 84-123 1-40 (143)
254 COG2520 Predicted methyltransf 92.8 0.4 8.6E-06 44.9 7.3 109 82-199 189-312 (341)
255 PF04816 DUF633: Family of unk 91.6 1.2 2.6E-05 38.6 8.4 133 85-224 1-141 (205)
256 PF13578 Methyltransf_24: Meth 91.4 0.043 9.3E-07 41.5 -0.6 94 86-183 1-105 (106)
257 PF03059 NAS: Nicotianamine sy 91.4 1.7 3.8E-05 39.5 9.6 138 82-223 121-272 (276)
258 PF06962 rRNA_methylase: Putat 91.4 0.51 1.1E-05 38.8 5.6 112 109-222 2-140 (140)
259 COG1064 AdhP Zn-dependent alco 91.4 0.39 8.4E-06 45.0 5.4 94 80-185 165-261 (339)
260 cd08283 FDH_like_1 Glutathione 90.9 1 2.2E-05 41.7 7.9 101 81-183 184-306 (386)
261 KOG0820 Ribosomal RNA adenine 90.4 0.59 1.3E-05 42.9 5.5 112 80-196 57-192 (315)
262 PF01555 N6_N4_Mtase: DNA meth 89.8 0.28 6E-06 41.0 2.8 21 162-182 35-55 (231)
263 KOG2187 tRNA uracil-5-methyltr 89.4 0.39 8.4E-06 47.2 3.8 69 50-123 354-423 (534)
264 cd00315 Cyt_C5_DNA_methylase C 89.3 3.2 6.9E-05 37.3 9.4 65 84-151 2-70 (275)
265 KOG2915 tRNA(1-methyladenosine 88.7 4.3 9.3E-05 37.4 9.7 119 76-202 100-230 (314)
266 KOG2198 tRNA cytosine-5-methyl 88.1 3.5 7.7E-05 39.1 9.1 128 77-205 151-326 (375)
267 PF09445 Methyltransf_15: RNA 87.3 0.6 1.3E-05 39.3 3.2 89 83-174 1-113 (163)
268 PF11899 DUF3419: Protein of u 87.1 0.55 1.2E-05 44.5 3.2 42 141-183 293-334 (380)
269 TIGR02822 adh_fam_2 zinc-bindi 86.3 4.3 9.2E-05 36.8 8.5 89 80-183 164-254 (329)
270 COG0116 Predicted N6-adenine-s 85.9 4.9 0.00011 38.3 8.8 112 77-188 187-349 (381)
271 PF00107 ADH_zinc_N: Zinc-bind 85.0 1.2 2.6E-05 34.2 3.7 82 91-183 1-89 (130)
272 cd08230 glucose_DH Glucose deh 83.6 6.8 0.00015 35.6 8.5 88 81-182 172-268 (355)
273 cd08245 CAD Cinnamyl alcohol d 83.0 4.3 9.3E-05 36.0 6.8 91 80-182 161-255 (330)
274 COG1063 Tdh Threonine dehydrog 83.0 3.4 7.4E-05 38.2 6.4 90 84-182 171-268 (350)
275 cd05188 MDR Medium chain reduc 82.8 5 0.00011 33.8 6.9 93 80-183 133-232 (271)
276 cd08234 threonine_DH_like L-th 82.4 3.9 8.5E-05 36.3 6.4 91 81-182 159-256 (334)
277 COG4262 Predicted spermidine s 81.7 3 6.5E-05 40.0 5.4 97 81-185 289-409 (508)
278 KOG1562 Spermidine synthase [A 81.7 2.9 6.2E-05 38.9 5.2 100 80-183 120-236 (337)
279 cd08232 idonate-5-DH L-idonate 81.7 5.7 0.00012 35.4 7.2 91 81-182 165-261 (339)
280 PRK09424 pntA NAD(P) transhydr 80.9 6.4 0.00014 38.9 7.7 97 80-182 163-284 (509)
281 PF05430 Methyltransf_30: S-ad 80.1 5.9 0.00013 31.7 6.0 72 142-223 49-124 (124)
282 PRK10742 putative methyltransf 79.2 7.1 0.00015 35.2 6.8 110 55-170 58-188 (250)
283 PF04672 Methyltransf_19: S-ad 78.3 5.4 0.00012 36.3 5.8 37 146-182 153-189 (267)
284 PRK15001 SAM-dependent 23S rib 77.9 11 0.00023 35.9 7.9 93 84-185 47-144 (378)
285 TIGR00675 dcm DNA-methyltransf 77.8 17 0.00037 33.2 9.1 134 85-222 1-160 (315)
286 PRK09880 L-idonate 5-dehydroge 76.7 10 0.00022 34.4 7.2 91 81-182 169-265 (343)
287 TIGR00027 mthyl_TIGR00027 meth 76.6 9.5 0.00021 34.1 6.9 104 76-183 77-197 (260)
288 PF07091 FmrO: Ribosomal RNA m 75.9 4 8.8E-05 36.7 4.2 117 82-205 106-242 (251)
289 cd08255 2-desacetyl-2-hydroxye 75.6 11 0.00024 32.5 6.9 90 81-182 97-189 (277)
290 PF01795 Methyltransf_5: MraW 75.2 9.2 0.0002 35.5 6.5 84 74-179 13-98 (310)
291 cd08294 leukotriene_B4_DH_like 74.9 15 0.00032 32.4 7.7 91 80-182 142-240 (329)
292 PF02153 PDH: Prephenate dehyd 74.6 23 0.0005 31.3 8.8 98 95-203 1-102 (258)
293 PHA01634 hypothetical protein 74.6 6.3 0.00014 32.5 4.7 59 59-124 11-69 (156)
294 COG4076 Predicted RNA methylas 74.5 11 0.00023 33.3 6.3 94 83-183 34-135 (252)
295 cd08261 Zn_ADH7 Alcohol dehydr 73.8 12 0.00025 33.5 6.8 91 81-182 159-257 (337)
296 COG0286 HsdM Type I restrictio 73.7 21 0.00045 34.9 8.9 102 81-182 186-325 (489)
297 COG0287 TyrA Prephenate dehydr 72.4 9.5 0.00021 34.7 5.9 110 83-203 4-119 (279)
298 PRK01747 mnmC bifunctional tRN 72.0 13 0.00028 37.4 7.2 57 141-204 164-224 (662)
299 cd05278 FDH_like Formaldehyde 70.8 14 0.00031 32.8 6.7 90 82-182 168-266 (347)
300 PF10354 DUF2431: Domain of un 70.4 24 0.00053 29.4 7.5 112 88-202 3-147 (166)
301 COG2384 Predicted SAM-dependen 70.3 74 0.0016 28.3 10.7 134 84-224 19-160 (226)
302 cd08236 sugar_DH NAD(P)-depend 70.2 12 0.00026 33.4 6.0 91 81-182 159-257 (343)
303 COG0863 DNA modification methy 69.8 12 0.00027 32.9 5.9 42 162-203 78-119 (302)
304 PF00145 DNA_methylase: C-5 cy 69.4 13 0.00029 32.7 6.1 133 84-220 2-159 (335)
305 TIGR00006 S-adenosyl-methyltra 69.1 10 0.00022 35.0 5.4 81 73-154 12-103 (305)
306 PF01861 DUF43: Protein of unk 69.1 78 0.0017 28.5 10.7 117 80-203 43-174 (243)
307 PF02636 Methyltransf_28: Puta 69.0 9.2 0.0002 33.6 4.9 75 82-157 19-109 (252)
308 PF04989 CmcI: Cephalosporin h 68.8 6.8 0.00015 34.3 3.9 108 69-184 23-148 (206)
309 TIGR03201 dearomat_had 6-hydro 68.6 12 0.00026 34.0 5.7 92 80-183 165-272 (349)
310 TIGR02825 B4_12hDH leukotriene 68.4 17 0.00037 32.4 6.6 90 81-182 138-236 (325)
311 cd08237 ribitol-5-phosphate_DH 68.3 15 0.00032 33.4 6.2 89 81-182 163-255 (341)
312 cd05285 sorbitol_DH Sorbitol d 67.5 21 0.00046 32.0 7.1 91 81-182 162-264 (343)
313 KOG1596 Fibrillarin and relate 67.2 13 0.00028 33.9 5.3 96 80-182 155-260 (317)
314 COG1565 Uncharacterized conser 66.1 13 0.00027 35.4 5.4 99 58-156 53-162 (370)
315 PLN03154 putative allyl alcoho 65.7 18 0.0004 33.0 6.4 91 80-182 157-257 (348)
316 PF03514 GRAS: GRAS domain fam 65.4 44 0.00095 31.5 8.9 106 77-182 106-243 (374)
317 COG2933 Predicted SAM-dependen 65.4 11 0.00023 34.9 4.5 68 81-153 211-280 (358)
318 PF07757 AdoMet_MTase: Predict 65.0 3.7 8.1E-05 32.6 1.4 31 81-114 58-88 (112)
319 cd05281 TDH Threonine dehydrog 64.8 26 0.00056 31.4 7.1 92 81-183 163-262 (341)
320 TIGR03451 mycoS_dep_FDH mycoth 64.7 36 0.00077 30.9 8.0 91 81-182 176-275 (358)
321 cd08295 double_bond_reductase_ 63.7 21 0.00046 32.0 6.3 90 80-182 150-250 (338)
322 KOG2651 rRNA adenine N-6-methy 63.6 8.6 0.00019 37.1 3.7 34 80-115 152-185 (476)
323 KOG0024 Sorbitol dehydrogenase 63.0 27 0.00059 32.9 6.8 94 81-183 169-273 (354)
324 PF14740 DUF4471: Domain of un 61.5 15 0.00033 33.7 4.9 55 140-202 219-284 (289)
325 cd08293 PTGR2 Prostaglandin re 61.4 30 0.00065 30.8 6.8 89 82-182 155-253 (345)
326 PF14314 Methyltrans_Mon: Viru 59.1 48 0.001 34.0 8.3 83 141-227 413-505 (675)
327 PRK07417 arogenate dehydrogena 58.7 33 0.00071 30.5 6.5 80 85-177 3-85 (279)
328 COG4301 Uncharacterized conser 58.0 54 0.0012 30.1 7.6 99 82-182 79-192 (321)
329 PF04445 SAM_MT: Putative SAM- 57.9 12 0.00026 33.4 3.5 76 78-156 72-164 (234)
330 cd08279 Zn_ADH_class_III Class 57.4 56 0.0012 29.7 8.0 91 82-183 183-282 (363)
331 COG0270 Dcm Site-specific DNA 57.2 83 0.0018 28.9 9.1 134 82-220 3-164 (328)
332 PRK07502 cyclohexadienyl dehyd 57.2 37 0.0008 30.5 6.7 91 82-182 6-99 (307)
333 TIGR00692 tdh L-threonine 3-de 56.7 42 0.00092 30.0 7.0 91 82-183 162-261 (340)
334 cd08241 QOR1 Quinone oxidoredu 55.5 67 0.0014 27.5 7.8 89 81-182 139-237 (323)
335 PF06460 NSP13: Coronavirus NS 55.3 93 0.002 28.6 8.7 134 80-223 60-209 (299)
336 TIGR00497 hsdM type I restrict 54.5 1.2E+02 0.0025 29.6 10.1 102 81-182 217-355 (501)
337 cd08239 THR_DH_like L-threonin 54.3 63 0.0014 28.8 7.7 92 80-182 162-261 (339)
338 TIGR03366 HpnZ_proposed putati 53.3 53 0.0011 28.8 6.9 92 81-183 120-218 (280)
339 cd08267 MDR1 Medium chain dehy 53.1 1.2E+02 0.0026 26.1 9.1 92 81-183 143-240 (319)
340 cd08274 MDR9 Medium chain dehy 52.9 70 0.0015 28.4 7.7 88 81-182 177-272 (350)
341 cd08263 Zn_ADH10 Alcohol dehyd 52.1 56 0.0012 29.6 7.1 91 81-182 187-286 (367)
342 PLN02586 probable cinnamyl alc 52.0 39 0.00085 31.0 6.1 90 81-182 183-277 (360)
343 cd08281 liver_ADH_like1 Zinc-d 52.0 56 0.0012 29.8 7.1 91 82-183 192-290 (371)
344 PRK05396 tdh L-threonine 3-deh 51.5 62 0.0013 28.9 7.1 92 81-183 163-263 (341)
345 cd08285 NADP_ADH NADP(H)-depen 50.4 56 0.0012 29.3 6.7 91 81-182 166-265 (351)
346 cd08242 MDR_like Medium chain 49.3 1.2E+02 0.0027 26.5 8.7 85 81-182 155-244 (319)
347 cd08233 butanediol_DH_like (2R 47.1 1E+02 0.0022 27.7 7.9 90 82-182 173-271 (351)
348 TIGR01202 bchC 2-desacetyl-2-h 46.6 63 0.0014 28.8 6.4 83 82-182 145-230 (308)
349 TIGR00561 pntA NAD(P) transhyd 46.2 34 0.00073 33.9 4.8 96 81-180 163-281 (511)
350 cd00401 AdoHcyase S-adenosyl-L 45.4 69 0.0015 30.9 6.7 85 81-183 201-289 (413)
351 PRK09489 rsmC 16S ribosomal RN 44.9 1.3E+02 0.0028 28.0 8.4 106 82-198 20-128 (342)
352 PRK08507 prephenate dehydrogen 44.3 67 0.0015 28.3 6.1 83 85-180 3-88 (275)
353 PF01206 TusA: Sulfurtransfera 44.0 1.1E+02 0.0023 21.2 6.5 44 165-208 16-60 (70)
354 PRK06274 indolepyruvate oxidor 43.0 45 0.00099 28.0 4.6 33 141-184 65-97 (197)
355 TIGR02175 PorC_KorC 2-oxoacid: 42.7 77 0.0017 26.3 5.9 32 142-184 65-98 (177)
356 cd08243 quinone_oxidoreductase 42.5 88 0.0019 27.0 6.6 89 81-182 142-237 (320)
357 PF12692 Methyltransf_17: S-ad 42.4 2.8 6.1E-05 35.1 -2.8 103 83-186 30-137 (160)
358 KOG2920 Predicted methyltransf 42.1 13 0.00028 34.1 1.2 42 54-95 86-130 (282)
359 cd08270 MDR4 Medium chain dehy 41.0 1.7E+02 0.0037 25.2 8.1 87 81-182 132-221 (305)
360 TIGR00006 S-adenosyl-methyltra 41.0 39 0.00085 31.2 4.2 27 161-187 218-244 (305)
361 cd08278 benzyl_alcohol_DH Benz 40.7 1E+02 0.0023 28.0 7.0 92 81-183 186-285 (365)
362 cd05289 MDR_like_2 alcohol deh 40.3 1.7E+02 0.0036 24.9 7.9 89 81-182 144-237 (309)
363 COG0275 Predicted S-adenosylme 40.1 77 0.0017 29.5 5.9 52 73-124 15-67 (314)
364 PLN02827 Alcohol dehydrogenase 39.4 42 0.00091 31.0 4.2 91 81-182 193-294 (378)
365 cd08298 CAD2 Cinnamyl alcohol 38.8 88 0.0019 27.5 6.0 86 82-183 168-256 (329)
366 PF05971 Methyltransf_10: Prot 38.5 21 0.00046 32.9 2.0 71 82-154 103-188 (299)
367 cd08266 Zn_ADH_like1 Alcohol d 38.0 1.8E+02 0.004 25.1 7.9 89 81-182 166-264 (342)
368 PRK10309 galactitol-1-phosphat 38.0 1E+02 0.0022 27.6 6.4 91 81-182 160-259 (347)
369 PLN02256 arogenate dehydrogena 37.4 1.4E+02 0.0029 27.3 7.1 106 76-195 30-141 (304)
370 PRK06522 2-dehydropantoate 2-r 37.1 2.2E+02 0.0049 24.8 8.4 90 84-182 2-99 (304)
371 KOG3924 Putative protein methy 37.1 27 0.00058 33.7 2.5 27 76-102 187-213 (419)
372 PF07101 DUF1363: Protein of u 36.3 14 0.00029 29.0 0.3 16 86-101 7-23 (124)
373 cd08292 ETR_like_2 2-enoyl thi 35.9 1.1E+02 0.0023 26.8 6.1 89 81-182 139-237 (324)
374 PF10237 N6-adenineMlase: Prob 34.8 87 0.0019 26.2 5.0 107 82-195 26-135 (162)
375 PF11599 AviRa: RRNA methyltra 34.7 90 0.002 28.0 5.2 53 70-123 40-95 (246)
376 cd05286 QOR2 Quinone oxidoredu 34.2 2.2E+02 0.0049 24.1 7.7 89 81-182 136-234 (320)
377 KOG1501 Arginine N-methyltrans 34.1 39 0.00084 33.4 3.1 31 82-114 67-97 (636)
378 PRK00050 16S rRNA m(4)C1402 me 33.6 60 0.0013 29.8 4.2 27 161-187 214-240 (296)
379 cd08260 Zn_ADH6 Alcohol dehydr 33.5 1.8E+02 0.0039 25.9 7.2 90 81-182 165-263 (345)
380 PRK11524 putative methyltransf 33.1 49 0.0011 29.6 3.5 44 78-124 205-249 (284)
381 PF08245 Mur_ligase_M: Mur lig 33.0 1.5E+02 0.0033 24.1 6.2 59 144-205 72-134 (188)
382 COG0373 HemA Glutamyl-tRNA red 32.8 77 0.0017 30.7 4.9 88 81-171 177-267 (414)
383 PF01558 POR: Pyruvate ferredo 32.6 61 0.0013 26.5 3.7 37 138-185 51-88 (173)
384 TIGR03334 IOR_beta indolepyruv 32.5 85 0.0019 26.3 4.7 31 142-183 63-93 (189)
385 PRK06853 indolepyruvate oxidor 32.2 74 0.0016 26.8 4.3 32 142-184 67-98 (197)
386 COG2813 RsmC 16S RNA G1207 met 32.1 1.1E+02 0.0023 28.5 5.5 56 141-200 35-91 (300)
387 PF01555 N6_N4_Mtase: DNA meth 32.0 60 0.0013 26.7 3.7 41 79-122 189-230 (231)
388 cd08289 MDR_yhfp_like Yhfp put 31.8 1.3E+02 0.0029 26.2 6.0 88 82-182 147-242 (326)
389 PRK13699 putative methylase; P 31.3 56 0.0012 28.5 3.4 42 80-124 162-204 (227)
390 PF01795 Methyltransf_5: MraW 31.3 60 0.0013 30.1 3.8 37 161-197 219-256 (310)
391 cd08258 Zn_ADH4 Alcohol dehydr 30.6 3.7E+02 0.0081 23.6 8.9 32 142-182 232-263 (306)
392 TIGR00518 alaDH alanine dehydr 30.4 57 0.0012 30.6 3.5 95 81-181 166-265 (370)
393 PRK03659 glutathione-regulated 29.9 69 0.0015 32.1 4.2 84 90-183 406-498 (601)
394 cd08231 MDR_TM0436_like Hypoth 29.9 2.2E+02 0.0048 25.5 7.3 91 81-182 177-279 (361)
395 COG3414 SgaB Phosphotransferas 29.7 2.5E+02 0.0054 21.3 6.4 51 120-184 25-76 (93)
396 PLN02740 Alcohol dehydrogenase 29.5 1.2E+02 0.0025 27.9 5.5 91 81-182 198-299 (381)
397 PRK12921 2-dehydropantoate 2-r 29.5 2.2E+02 0.0048 25.0 7.1 102 84-194 2-114 (305)
398 COG3315 O-Methyltransferase in 29.5 84 0.0018 28.8 4.4 104 76-183 88-209 (297)
399 cd05283 CAD1 Cinnamyl alcohol 29.3 2.1E+02 0.0045 25.5 6.9 90 82-182 170-262 (337)
400 PF05206 TRM13: Methyltransfer 29.1 44 0.00096 30.1 2.5 20 82-101 19-38 (259)
401 PRK08300 acetaldehyde dehydrog 28.8 1.6E+02 0.0035 27.2 6.1 93 83-185 5-102 (302)
402 cd08235 iditol_2_DH_like L-idi 28.8 1.9E+02 0.0041 25.5 6.5 92 81-183 165-265 (343)
403 PF02254 TrkA_N: TrkA-N domain 28.7 70 0.0015 23.8 3.2 87 90-185 4-98 (116)
404 COG0275 Predicted S-adenosylme 28.4 80 0.0017 29.5 4.0 27 161-187 222-248 (314)
405 PRK11064 wecC UDP-N-acetyl-D-m 28.2 2.6E+02 0.0057 26.5 7.7 102 83-193 4-131 (415)
406 PF02558 ApbA: Ketopantoate re 27.8 1.3E+02 0.0029 23.4 4.8 99 88-195 4-114 (151)
407 PRK07066 3-hydroxybutyryl-CoA 27.2 2.3E+02 0.0051 26.1 7.0 97 82-185 7-120 (321)
408 cd08268 MDR2 Medium chain dehy 26.7 3.6E+02 0.0077 23.0 7.8 89 82-182 145-242 (328)
409 cd08240 6_hydroxyhexanoate_dh_ 26.7 1.9E+02 0.0041 25.8 6.2 91 81-182 175-273 (350)
410 PRK10669 putative cation:proto 26.3 98 0.0021 30.4 4.5 86 90-184 423-516 (558)
411 TIGR02819 fdhA_non_GSH formald 26.3 1.9E+02 0.004 27.1 6.2 99 82-182 186-298 (393)
412 TIGR02441 fa_ox_alpha_mit fatt 26.2 2.3E+02 0.005 29.3 7.3 108 81-194 334-461 (737)
413 TIGR00872 gnd_rel 6-phosphoglu 26.0 1.2E+02 0.0026 27.2 4.8 86 85-181 3-91 (298)
414 PF08468 MTS_N: Methyltransfer 25.6 69 0.0015 26.5 2.9 114 82-208 13-130 (155)
415 cd08291 ETR_like_1 2-enoyl thi 24.8 1.5E+02 0.0032 26.2 5.1 78 92-182 156-241 (324)
416 PLN02178 cinnamyl-alcohol dehy 24.8 1.5E+02 0.0032 27.5 5.2 90 81-182 178-272 (375)
417 PRK05708 2-dehydropantoate 2-r 24.7 3.9E+02 0.0085 24.0 7.9 103 83-194 3-116 (305)
418 PF03446 NAD_binding_2: NAD bi 24.5 55 0.0012 26.6 2.1 96 88-196 7-109 (163)
419 PF11253 DUF3052: Protein of u 24.5 1.2E+02 0.0027 24.6 4.0 40 140-183 42-81 (127)
420 PLN02353 probable UDP-glucose 24.5 81 0.0018 30.8 3.5 110 84-194 3-140 (473)
421 PRK00299 sulfur transfer prote 24.1 2.8E+02 0.0062 20.1 6.9 60 160-223 19-80 (81)
422 PF12242 Eno-Rase_NADH_b: NAD( 24.0 1.2E+02 0.0027 22.6 3.6 33 82-114 39-72 (78)
423 PF01383 CpcD: CpcD/allophycoc 23.6 78 0.0017 21.8 2.4 20 161-180 32-51 (56)
424 KOG0821 Predicted ribosomal RN 23.6 1.1E+02 0.0025 27.6 4.0 43 81-123 50-94 (326)
425 PRK11730 fadB multifunctional 23.5 2.2E+02 0.0048 29.2 6.6 103 81-193 312-438 (715)
426 PRK12490 6-phosphogluconate de 23.5 1.3E+02 0.0029 26.9 4.5 86 87-182 5-93 (299)
427 cd08300 alcohol_DH_class_III c 23.4 1.7E+02 0.0038 26.6 5.4 91 81-182 186-287 (368)
428 KOG0822 Protein kinase inhibit 23.2 4.5E+02 0.0097 26.8 8.3 127 52-183 334-478 (649)
429 cd08265 Zn_ADH3 Alcohol dehydr 23.1 1.7E+02 0.0037 26.8 5.3 91 82-182 204-306 (384)
430 cd05282 ETR_like 2-enoyl thioe 22.9 3.4E+02 0.0074 23.4 7.0 89 81-182 138-236 (323)
431 cd08297 CAD3 Cinnamyl alcohol 22.3 3.2E+02 0.0069 24.1 6.7 91 80-182 164-264 (341)
432 COG0604 Qor NADPH:quinone redu 22.3 1.2E+02 0.0026 27.8 4.1 90 82-184 143-242 (326)
433 PRK06035 3-hydroxyacyl-CoA deh 22.0 3.5E+02 0.0076 23.9 7.0 36 82-120 3-41 (291)
434 KOG1481 Cysteine synthase [Ami 22.0 3.1E+02 0.0068 25.7 6.5 67 48-119 181-255 (391)
435 PF03721 UDPG_MGDP_dh_N: UDP-g 21.9 1.4E+02 0.003 25.1 4.1 97 85-185 3-122 (185)
436 PTZ00354 alcohol dehydrogenase 21.8 5.3E+02 0.011 22.3 8.4 88 82-182 141-239 (334)
437 cd01842 SGNH_hydrolase_like_5 21.8 77 0.0017 27.3 2.4 45 142-186 49-102 (183)
438 PRK08306 dipicolinate synthase 21.7 2.1E+02 0.0045 26.0 5.4 85 81-180 151-238 (296)
439 PRK06545 prephenate dehydrogen 21.7 3.5E+02 0.0076 25.0 7.1 99 84-194 2-108 (359)
440 cd08238 sorbose_phosphate_red 21.6 4.2E+02 0.0091 24.6 7.7 92 81-181 175-286 (410)
441 cd08246 crotonyl_coA_red croto 21.5 4.4E+02 0.0095 24.1 7.7 89 81-182 193-314 (393)
442 cd05288 PGDH Prostaglandin deh 21.5 4.8E+02 0.01 22.6 7.7 89 81-182 145-243 (329)
443 PRK07819 3-hydroxybutyryl-CoA 21.2 1.5E+02 0.0032 26.6 4.4 95 82-184 5-122 (286)
444 TIGR02817 adh_fam_1 zinc-bindi 21.1 3.1E+02 0.0067 24.0 6.4 89 82-182 149-246 (336)
445 PRK10083 putative oxidoreducta 21.0 2.3E+02 0.005 25.0 5.5 91 81-182 160-258 (339)
446 cd08296 CAD_like Cinnamyl alco 20.9 2.1E+02 0.0045 25.4 5.3 90 80-182 162-258 (333)
447 cd08273 MDR8 Medium chain dehy 20.8 5.6E+02 0.012 22.2 8.4 88 81-182 139-232 (331)
448 cd08250 Mgc45594_like Mgc45594 20.7 5.5E+02 0.012 22.3 7.9 88 82-182 140-236 (329)
449 TIGR00936 ahcY adenosylhomocys 20.6 3.4E+02 0.0074 26.1 6.8 87 81-183 194-282 (406)
450 cd05279 Zn_ADH1 Liver alcohol 20.4 2.4E+02 0.0051 25.7 5.6 90 82-182 184-284 (365)
451 TIGR02818 adh_III_F_hyde S-(hy 20.3 2.1E+02 0.0045 26.2 5.2 91 81-182 185-286 (368)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.3e-67 Score=499.01 Aligned_cols=219 Identities=62% Similarity=1.072 Sum_probs=211.8
Q ss_pred CcccccccccCCCCCCCCccccccCCccccCCcccCCCCcccccCccccccccccccchHHHHHHHHHHHHHhh-hhCCC
Q 026623 2 HFRYKQMETCITPFPEVSSTKEVAGGELKKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMNS-LIGTR 80 (235)
Q Consensus 2 ~~wy~~~~~Ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~rl~~~~~~g~~~~~f~~d~~~W~~~v~~y~~~l~-~l~~~ 80 (235)
++||+||++||+|+|++.+ +.+++.+++||+||+++|+||.++++.|.+++.|.+|++.|++++++|+.++. .|+++
T Consensus 287 ~aWY~~l~~Cit~~p~~~~--~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~ 364 (506)
T PF03141_consen 287 AAWYVPLEACITPLPEVSS--EIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWG 364 (506)
T ss_pred chhhcchhhhcCcCCcccc--cccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 6899999999999999753 67789999999999999999999888999999999999999999999998776 68999
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC 160 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~ 160 (235)
++||||||++|+|||||+|.++++|||||+|++.+++|.++++|||||+||||||+|||||+||||||++++|+++.++|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC 444 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRC 444 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623 161 KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK 222 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k 222 (235)
+++++|.||||||||||++||+|+.+++.+|++++++|+|++.++++|+|+.++|+||+|||
T Consensus 445 ~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 445 EMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.8e-33 Score=265.61 Aligned_cols=201 Identities=16% Similarity=0.273 Sum_probs=166.2
Q ss_pred cccccCCCCCCCCccccccCCccccCCccc------CCCCcccccCcccccccc--------ccccchHHHHHHHHHHHH
Q 026623 7 QMETCITPFPEVSSTKEVAGGELKKFPSRL------FDVPPRIANGEVEGVTGK--------SYQEDSKLWKKHVNAYKK 72 (235)
Q Consensus 7 ~~~~Ci~~~p~~~~~~~~~~~~~~~wp~rl------~~~p~rl~~~~~~g~~~~--------~f~~d~~~W~~~v~~y~~ 72 (235)
+...|++|+|.+| ..|.+||++. |+|+++|+. .++.+.. .|+.....|...+.+|..
T Consensus 33 ~~~~CLVp~P~gY-------k~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid 103 (506)
T PF03141_consen 33 ERLRCLVPPPKGY-------KTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYID 103 (506)
T ss_pred CCCccccCCCccC-------CCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHH
Confidence 3568999999976 6799999998 788899887 5555443 399999999999999997
Q ss_pred Hhh-hh----CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccc-ccCCCCCCCccc
Q 026623 73 MNS-LI----GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW-CEGFSTYPRTYD 145 (235)
Q Consensus 73 ~l~-~l----~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~-~e~l~~~p~sFD 145 (235)
.+. .| ..+.+|.+||+|||+|+|+++|.++++.+|++.+-|.. ...++|.|||++..+... .+.|||++++||
T Consensus 104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred HHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchh
Confidence 554 22 45789999999999999999999999999999999998 899999999987664322 367998889999
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC----------hHHHHHHHHHHhccCceeEeecCCCCCCCCc
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE----------VDALNKVRKFAEGMRWDTKMMDHEDGPLMPE 215 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~----------~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e 215 (235)
+|||+..+....... ..+|.|++|||||||+||++-. .+.+++|++++++|||+.... +.
T Consensus 184 mvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~--------~~ 253 (506)
T PF03141_consen 184 MVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE--------KG 253 (506)
T ss_pred hhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee--------eC
Confidence 999998887543211 4799999999999999999942 346899999999999998763 45
Q ss_pred eEEEEEecccc
Q 026623 216 KILIAVKQYWV 226 (235)
Q Consensus 216 ~~l~~~k~~w~ 226 (235)
.+.|+||+.-.
T Consensus 254 ~~aIwqKp~~~ 264 (506)
T PF03141_consen 254 DTAIWQKPTNN 264 (506)
T ss_pred CEEEEeccCCc
Confidence 59999998754
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=2e-20 Score=165.17 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccc
Q 026623 60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHD 132 (235)
Q Consensus 60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~ 132 (235)
++.||+..-. .++..++.+|||+|||||.++..+++.-. ...|+++|+| +||..+.+|-. +..++.
T Consensus 36 ~~~Wr~~~i~------~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 36 HRLWRRALIS------LLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred hHHHHHHHHH------hhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 4566655432 22323578999999999999999988633 5689999999 99999988843 334678
Q ss_pred cccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 133 WCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 133 ~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
.+|.|||.++|||+|.+++.|.+++ +++.+|+||+|||||||.+++.|.
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 8899998889999999999999885 899999999999999999999974
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=1.7e-19 Score=158.56 Aligned_cols=116 Identities=21% Similarity=0.301 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c--cccccc
Q 026623 60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L--IGIYHD 132 (235)
Q Consensus 60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l--~~~~~~ 132 (235)
++.||+.+... +...+..+|||+|||||.++..|.+.-.....|+++|.| +||..+.+|- . +..+..
T Consensus 32 ~~~wr~~~~~~------~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIKL------LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHHH------HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHhc------cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 46677755432 233346799999999999999988742223579999999 9999988762 2 445677
Q ss_pred cccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 133 WCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 133 ~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
.+|.||+.+++||+|.|++.|++++ ++..+|.||+|||||||.++|.|.
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEeec
Confidence 7899997779999999999999875 789999999999999999999973
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=3.2e-19 Score=131.09 Aligned_cols=91 Identities=25% Similarity=0.358 Sum_probs=75.3
Q ss_pred eeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc---cccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623 86 MDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG---IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 86 LD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~---~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~ 161 (235)
||+|||+|.++..|.+++ ..+++++|.+ ++++.+.++.... ..+...+.+|+.+++||+|++..+|+|+ .+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 899999999999999984 3589999999 8999888875422 4555567888777999999999999998 37
Q ss_pred hHHHHHHHhhhhcCCcEEEE
Q 026623 162 PEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii 181 (235)
...++.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 89999999999999999986
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.73 E-value=9.4e-18 Score=149.24 Aligned_cols=100 Identities=21% Similarity=0.156 Sum_probs=82.2
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc---------cccccccccCCCCCCCccceee
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL---------IGIYHDWCEGFSTYPRTYDLIH 148 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl---------~~~~~~~~e~l~~~p~sFDlV~ 148 (235)
.+..+|||+|||+|.++..|.++ +. ..+|+++|.| +|+..+.+|.. +......++.+|+.+++||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 34679999999999999888764 21 2379999999 99998876521 2344556678886669999999
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++.+|+|++ ++..+|.|+.|+|||||.+++.|
T Consensus 151 ~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 999999885 78999999999999999999987
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=2.4e-16 Score=138.77 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=84.4
Q ss_pred HHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeeh
Q 026623 72 KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 72 ~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
.++..+......+|||+|||+|.++..|..+.. ...|+++|.| .|+..+.++++ ...+...+.++ .+++||+|+|+
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEe
Confidence 355556655678999999999999999987621 2479999999 99999888763 23333345553 35899999999
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.+|+|++ ++..+|.++.|+|||||.+++..
T Consensus 97 ~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 97 AALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 9999986 67899999999999999999973
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.66 E-value=5e-16 Score=136.01 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=84.6
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehh
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
+..+......+|||+|||+|.++..|...+ ..++++|.+ +|+..+.++.. ...+....+.+|+.+++||+|+++.
T Consensus 35 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 35 LAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 334544456789999999999999998764 479999999 99998888753 2334455577886668999999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++++.. ++..+|.|+.|+|||||.++++.
T Consensus 112 ~l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 112 AVQWCG---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhhcC---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 998764 78999999999999999999985
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=3.5e-16 Score=143.68 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=80.8
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
...+|||+|||+|.++..|+..+ .+|+++|.+ ++++.+.++. + +...+..++.+++.+++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35689999999999999998764 479999999 9999887652 1 22344555677766689999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+|+. ++..+|.|+.|+|||||.++|.+
T Consensus 208 LeHv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99996 67899999999999999999996
No 10
>PRK05785 hypothetical protein; Provisional
Probab=99.64 E-value=9.1e-16 Score=133.94 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC
Q 026623 61 KLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST 139 (235)
Q Consensus 61 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~ 139 (235)
..|++.+..... ..+.. ..+|||+|||||.++..|.+.. ..+|+++|.| +||+.+.++. ..++..++.+|+
T Consensus 35 ~~wr~~~~~~l~--~~~~~--~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~ 106 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR--PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALPF 106 (226)
T ss_pred HHHHHHHHHHHH--HhcCC--CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCCC
Confidence 557765543221 11222 4699999999999999998763 2479999999 9999988764 234566788997
Q ss_pred CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCc
Q 026623 140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEG 177 (235)
Q Consensus 140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG 177 (235)
.+++||+|+++++++|++ +++.+|+||.|||||.+
T Consensus 107 ~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 RDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence 779999999999998875 78999999999999953
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.64 E-value=1.2e-15 Score=140.64 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=80.2
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc---cccccccccCCCCCCCccceeeehh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL---IGIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
....+|||+|||+|.++..|.++. ..+|+++|.+ .++..+.+ +|+ +......++.+|+.+++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 456789999999999999998753 2479999999 88876544 344 2334445566786679999999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+++|++ +...+|.|+.|+|||||.|+|.+
T Consensus 195 ~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999986 67899999999999999999975
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.64 E-value=1.2e-16 Score=128.45 Aligned_cols=96 Identities=25% Similarity=0.386 Sum_probs=75.4
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
....+|||+|||+|.++..|.+.+. .++++|.+ .++.. +......++- +..+..+++||+|+|+.+|+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~-~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDA-QDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEEC-HTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhh-hhhhccccchhhHhhHHHHhhcc-
Confidence 4567999999999999999988763 79999999 77766 2222221111 11223459999999999999997
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
++..+|.++.|+|||||++++.+..
T Consensus 93 --d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 6899999999999999999999854
No 13
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=1.6e-14 Score=123.25 Aligned_cols=153 Identities=16% Similarity=0.313 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc--cccccc
Q 026623 60 SKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL--IGIYHD 132 (235)
Q Consensus 60 ~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl--~~~~~~ 132 (235)
...|++++-.-..+.+.++. ..+|||+|||+|.++..++.... ...|+++|.+ +++..+.+ .++ +..++.
T Consensus 26 ~~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 26 EELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 45788887554434444543 57899999999998888875311 3479999999 88876554 344 334455
Q ss_pred cccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE-eecCC-CC
Q 026623 133 WCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK-MMDHE-DG 210 (235)
Q Consensus 133 ~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~-~~~~~-~~ 210 (235)
.++.++. +++||+|+|+.. .+++.++.++.|+|||||.+++.+.......+..+++.+.|.+. .+..+ .|
T Consensus 103 d~~~~~~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 5555664 689999998642 36789999999999999999999988888889999999999864 22222 23
Q ss_pred CCCCceEEEEEec
Q 026623 211 PLMPEKILIAVKQ 223 (235)
Q Consensus 211 ~~~~e~~l~~~k~ 223 (235)
-.+.-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 3233445566664
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.61 E-value=2.6e-15 Score=133.70 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=83.8
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccccccccCCCCCCCcccee
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIYHDWCEGFSTYPRTYDLI 147 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~~~~~e~l~~~p~sFDlV 147 (235)
++..++..+..+|||+|||+|.++..|+... ...|+++|.+ +++..+.++.. +...+..+...|+.+++||+|
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEE
Confidence 4444555556799999999999998887642 2479999999 89988877632 233334444566555899999
Q ss_pred eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
++..+++|++ ..+...+|.|+.|+|||||+|++.|.
T Consensus 122 ~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 122 YSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999998874 23678999999999999999999974
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=5.9e-15 Score=127.24 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=80.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a 149 (235)
+......+|||+|||+|.++..|.+.-.-..+|+++|.+ +++..+.++ ++ +..++..++.+++.+++||+|++
T Consensus 41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEE
Confidence 443346799999999999999887641113479999999 888876554 22 23344455666754589999999
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+.+++|++ +...+|.|+.|+|||||++++.+.
T Consensus 121 ~~~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 121 GFGLRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99998875 678999999999999999999863
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.59 E-value=7.9e-15 Score=134.36 Aligned_cols=121 Identities=14% Similarity=0.211 Sum_probs=85.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH--HHc--C---c
Q 026623 55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI--YER--G---L 126 (235)
Q Consensus 55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~--~~R--g---l 126 (235)
.|..++ .|+..+. |.++++.++....++|||+|||+|.++..++..+. ..|+++|.| .|+..+ .++ + .
T Consensus 97 ~~~~~~-e~~s~~~-~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~ 172 (314)
T TIGR00452 97 GIKIDS-EWRSDIK-WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKR 172 (314)
T ss_pred cccCCH-HHHHHHH-HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCC
Confidence 344443 4554444 34456556665678999999999999988887653 369999999 777532 111 1 1
Q ss_pred cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 127 IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 127 ~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+.......+.++. ..+||+|+|+.+|+|.+ ++..+|.|++|+|||||.|++.+
T Consensus 173 v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 173 AILEPLGIEQLHE-LYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred eEEEECCHHHCCC-CCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 1112222345553 36899999999999985 78899999999999999999873
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=4.9e-15 Score=130.58 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=81.6
Q ss_pred HHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCC-CCC
Q 026623 71 KKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFS-TYP 141 (235)
Q Consensus 71 ~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~-~~p 141 (235)
..+++.+.. ...+|||+|||+|.++..|++.+ .+|+++|.+ +|+..+.++ |+. ..++...+.++ +.+
T Consensus 35 ~~~l~~l~~-~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELPP-RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcCC-CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 334444543 35699999999999999999875 479999999 999987664 332 22333334444 345
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++||+|+|+.+|+|+. ++..+|.++.|+|||||.+++..
T Consensus 111 ~~fD~V~~~~vl~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 111 TPVDLILFHAVLEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCCCEEEehhHHHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 8999999999999985 67899999999999999998864
No 18
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=7.7e-15 Score=130.36 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=89.1
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCC-----CceeEEeecCcc-ccHHHHHHcC----ccc-----cccccccCCCCCC
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPK-----SWVMNVVPTTAK-NTLGVIYERG----LIG-----IYHDWCEGFSTYP 141 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~-----~~~~~V~~~D~s-~~L~~~~~Rg----l~~-----~~~~~~e~l~~~p 141 (235)
+++....++|||+||||-+|-.+.+.- .-..+|+.+|++ +||.++.+|. +-. .+...+|.|||.+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 345567899999999999887777641 112589999999 9999877764 322 2344678999666
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHH-HHHHHHHhc
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDAL-NKVRKFAEG 197 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~-~~i~~~~~~ 197 (235)
++||..+.++.+... .+++++|+|++|||||||.|.+.+-..+- ..++.++..
T Consensus 176 ~s~D~yTiafGIRN~---th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNV---THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred CcceeEEEecceecC---CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 999999999988654 58899999999999999999999854432 344444443
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.58 E-value=7.2e-15 Score=134.77 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=81.0
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH--HHc--C---ccccccccccCCCCCC
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI--YER--G---LIGIYHDWCEGFSTYP 141 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~--~~R--g---l~~~~~~~~e~l~~~p 141 (235)
|..+++.++....++|||+|||+|.++..|+..+. ..|+++|.| .++... ..+ + -+.......+.+|+ +
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c
Confidence 34445556555568999999999999999988753 259999998 666431 111 1 12233334466776 8
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++||+|+|..+++|.. ++..+|.++.|+|||||.+++.+
T Consensus 188 ~~FD~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 188 KAFDTVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCcCEEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999999875 78899999999999999999873
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=1.7e-14 Score=123.09 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcc--ccccccccCCCCCCCccceeeehhhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLI--GIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~--~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
...+|||+|||+|.++..|++++ .+|+++|.| ++++.+.+ +++. .......+.++ ++++||+|+|+.+|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-FDGEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-cCCCcCEEEEecch
Confidence 35689999999999999999875 379999999 88886543 3432 11222223333 35789999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+|+. ..+...++.++.|.|||||++++.
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8874 346789999999999999996554
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.54 E-value=2e-14 Score=122.42 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=72.2
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCCCCCCccceeeehhhhcc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
..+|||+|||+|.++.+|++++ ..|+++|.+ .++..+.++ ++. ......++.++ ++++||+|+++.+|+|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-ccCCCCEEEEeccccc
Confidence 4689999999999999999875 379999999 888865433 432 11111122233 3578999999999998
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+. ..+...++.++.|.|||||++++.
T Consensus 107 ~~-~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQ-AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 84 346789999999999999996554
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=2.9e-14 Score=125.19 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=80.3
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeeh
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
++..+......+|||+|||+|.++..|++... ..+|+++|.+ .|+..+.++.- +.......+.+. .+++||+|+++
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~ 100 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFAN 100 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEc
Confidence 44445545578999999999999999986521 2479999999 89988876631 222232333332 34799999999
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.+|+|++ +...+|.++.|+|||||.+++..
T Consensus 101 ~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 101 ASLQWLP---DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cChhhCC---CHHHHHHHHHHhcCCCcEEEEEC
Confidence 9999985 67899999999999999999973
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=2.7e-14 Score=136.03 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=79.6
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--Cc---cccccccccCCCCCCCccceeeehh
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--GL---IGIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--gl---~~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
...+..+|||+|||+|.++..|++.. ...|+++|.| +++..+.++ ++ +...+..+..+++.+++||+|+|..
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC
Confidence 33456799999999999998888753 2479999999 999887665 22 2233333444564458999999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+++|++ +.+.+|.|+.|+|||||.+++.|
T Consensus 341 ~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 341 TILHIQ---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccccC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999986 67899999999999999999986
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=1.1e-14 Score=111.35 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=73.8
Q ss_pred CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehh-
Q 026623 82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANG- 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~- 151 (235)
..+|||+|||+|.++.+|++. + ...|+++|.+ .+++.+.++- . +..++...+........||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFP--GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 468999999999999999982 3 2469999999 8999877664 2 2233322211133447799999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.++++.+..+...+|.++.+.|||||+++|++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45544322356799999999999999999986
No 25
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.52 E-value=7.4e-14 Score=119.11 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=79.0
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+|||+|||+|.++..|.+... ...++++|.+ +++..+.++.. +..+....+.+++.+++||+|+++.+++|..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 46899999999999999987642 2358999999 88887776642 2233444466776669999999999999885
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++..+|.++.|+|||||.+++.+
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEe
Confidence 67899999999999999999985
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=7.2e-14 Score=125.62 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=83.7
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcc-ccccccccCCCCCCCccceeeehhhhcc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLI-GIYHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
..+|||+|||+|.++.+|+.++ .+|+++|.| .+++.+.+ .++. .......+..+ .+++||+|+++.+|+|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-IQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-ccCCccEEEEcchhhh
Confidence 3589999999999999998875 379999999 88886543 3441 11111112222 3689999999999998
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEEe---C------h--HH---HHHHHHHHhccCceeEeec
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFRD---E------V--DA---LNKVRKFAEGMRWDTKMMD 206 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d---~------~--~~---~~~i~~~~~~~~W~~~~~~ 206 (235)
+. ..++..++.+|.|+|||||++++.. . . .. -.++....+. |++..+.
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 84 4568899999999999999966542 0 0 11 3456666665 8887663
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.51 E-value=8.2e-14 Score=118.46 Aligned_cols=104 Identities=26% Similarity=0.383 Sum_probs=79.6
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--Cc---cccccccccCCCCCCCccceeeeh
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--GL---IGIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--gl---~~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
+......+|||+|||+|.++..+++...-..+++++|.+ .++..+.++ +. +.......+.+++.+++||+|++.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSD 94 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEe
Confidence 444456799999999999999888642112479999999 888888776 11 222222334456555899999999
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.+|+|++ ++..++.++.|+|||||++++.+
T Consensus 95 ~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 95 RVLQHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred chhhccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 9999986 67899999999999999999875
No 28
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.51 E-value=7.2e-14 Score=124.76 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=89.0
Q ss_pred ccccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccch----HHHHHhcCC----CceeEEeecCcc-ccHHHHH
Q 026623 53 GKSYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGG----FAAALESPK----SWVMNVVPTTAK-NTLGVIY 122 (235)
Q Consensus 53 ~~~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~----faa~L~~~~----~~~~~V~~~D~s-~~L~~~~ 122 (235)
...|-.|...|......... ++.........+|+|+|||+|. +|..|.+.. .+...|+++|++ .||+.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 44577777777776655322 2222222335699999999996 455554421 234689999999 9999876
Q ss_pred HcC--------c-------------------------ccc-ccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHH
Q 026623 123 ERG--------L-------------------------IGI-YHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLE 168 (235)
Q Consensus 123 ~Rg--------l-------------------------~~~-~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~E 168 (235)
+.- + +.. .+|.. ..++.+++||+|+|.++|+|+. ..+...++.+
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~-~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~ 227 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL-AESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNR 227 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC-CCCCccCCCCEEEechhHHhCC-HHHHHHHHHH
Confidence 531 1 111 13332 2443358999999999999984 2456789999
Q ss_pred HhhhhcCCcEEEEEeCh
Q 026623 169 MDRILRPEGAVIFRDEV 185 (235)
Q Consensus 169 m~RVLRPGG~lii~d~~ 185 (235)
+.|+|||||++++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999998643
No 29
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=7.4e-15 Score=110.81 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=55.0
Q ss_pred eeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cccccc-cCCCCCC-CccceeeehhhhccC
Q 026623 86 MDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWC-EGFSTYP-RTYDLIHANGVFSLY 156 (235)
Q Consensus 86 LD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~-e~l~~~p-~sFDlV~a~~vl~h~ 156 (235)
||+|||+|.++..|.+.. ....++++|.| .|+..+.+| +... ...... +.+...+ ++||+|++..+|||+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998763 25689999999 898654443 2111 111111 1122222 699999999999999
Q ss_pred CCCCChHHHHHHHhhhhcCCcEE
Q 026623 157 ENTCKPEDILLEMDRILRPEGAV 179 (235)
Q Consensus 157 ~~~~~~~~~L~Em~RVLRPGG~l 179 (235)
+ ++..+|+.+.+.|||||.|
T Consensus 80 ~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----HHHHHHHHTTT-TSS-EE
T ss_pred h---hHHHHHHHHHHHcCCCCCC
Confidence 3 8899999999999999986
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=3.7e-14 Score=125.01 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccc-cccccCCCCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIY-HDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~-~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
...+|||+|||-|.++..|+..| .+|+++|.+ .+++++..+.+ ...| ....|.|....++||+|+|..|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 46799999999999999999987 589999999 89998775533 2111 112233432238999999999999
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|++ +++.+++++.+.+||||.+++++
T Consensus 136 Hv~---dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 136 HVP---DPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEec
Confidence 997 77899999999999999999996
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.49 E-value=6.9e-14 Score=123.97 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=75.7
Q ss_pred CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
+..+|||+|||+|..+..++.. +. ...|+++|.+ +++..+.++ |+ +...+...+.+++.+++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 4679999999999866555432 21 2369999999 899987764 32 12233344667755689999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++|.+ +...++.|+.|+|||||.|++.+
T Consensus 156 ~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 98875 66899999999999999999985
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.48 E-value=7.2e-15 Score=111.74 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=69.7
Q ss_pred EeeeccccchHHHHHhcCC--CceeEEeecCcc-ccHHHHHHcC----c-cccccccccCCCCCCCccceeeeh-hhhcc
Q 026623 85 VMDMNAGLGGFAAALESPK--SWVMNVVPTTAK-NTLGVIYERG----L-IGIYHDWCEGFSTYPRTYDLIHAN-GVFSL 155 (235)
Q Consensus 85 VLD~GCG~G~faa~L~~~~--~~~~~V~~~D~s-~~L~~~~~Rg----l-~~~~~~~~e~l~~~p~sFDlV~a~-~vl~h 155 (235)
|||+|||+|..+.+|.+.. .-...++++|.+ +||..+.++. . +..++..++.+++..++||+|+|+ .+|+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999888642 112589999999 9999888876 2 334566666677666899999995 55999
Q ss_pred CCCCCChHHHHHHHhhhhcCCc
Q 026623 156 YENTCKPEDILLEMDRILRPEG 177 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG 177 (235)
+. ..+++.+|.++.++|||||
T Consensus 81 ~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SS-HHHHHHHHHHHHHTEEEEE
T ss_pred CC-HHHHHHHHHHHHHHhCCCC
Confidence 74 4578999999999999998
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=6.6e-14 Score=123.26 Aligned_cols=98 Identities=11% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCceEeeeccccchHHHHHhc---CCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeee
Q 026623 81 RYRNVMDMNAGLGGFAAALES---PKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~---~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a 149 (235)
...+|||+|||+|.++..|+. .+ ...++++|.| +|+..+.++ ++ +..+....+.+++ ..||+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~--~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHD--NCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCC--CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEeh
Confidence 356899999999999888865 23 2479999999 999988765 22 2223333333442 46999999
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+.+|||+++ .+...++.||.|+|||||.|++.|
T Consensus 132 ~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999853 356799999999999999999997
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=7.2e-14 Score=113.60 Aligned_cols=100 Identities=22% Similarity=0.429 Sum_probs=77.8
Q ss_pred CceEeeeccccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCC-CCCccceeeehhh
Q 026623 82 YRNVMDMNAGLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFST-YPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~-~p~sFDlV~a~~v 152 (235)
..+|||+|||+|.++..|++ ... ..+++++|.+ ++++.+.++ ++. ..++...+.++. +++.||+|+++.+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56999999999999999983 321 3479999999 999987773 442 334444444551 2389999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
++|+. ++..+|.++.|.|+|||.+++.+..
T Consensus 83 l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98875 6789999999999999999999865
No 35
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=1.4e-13 Score=122.64 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=74.2
Q ss_pred CCceEeeeccccchHHHHHhcC-C-CceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccC
Q 026623 81 RYRNVMDMNAGLGGFAAALESP-K-SWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLY 156 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~-~-~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~ 156 (235)
...+|||+|||+|.++..|.+. + .-...++++|.| +++..+.++.. +.......+.+|+.+++||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3568999999999999988764 1 111368999999 99998877642 22334444668866699999997432
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHH
Q 026623 157 ENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKF 194 (235)
Q Consensus 157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~ 194 (235)
+ ..+.|+.|+|||||+|++....+ .+.+++.+
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 1 24689999999999999986442 34444444
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.46 E-value=1.7e-13 Score=123.24 Aligned_cols=128 Identities=16% Similarity=0.266 Sum_probs=80.9
Q ss_pred cccccccchHHHHHHHH-HHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHH----Hc
Q 026623 52 TGKSYQEDSKLWKKHVN-AYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIY----ER 124 (235)
Q Consensus 52 ~~~~f~~d~~~W~~~v~-~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~----~R 124 (235)
|-..|+.++..-..... .+..++..++-.++.+|||+|||.|+++.+++++ + .+|+++.+| +....+. ++
T Consensus 32 S~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~ 108 (273)
T PF02353_consen 32 SCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREA 108 (273)
T ss_dssp S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCS
T ss_pred CCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhc
Confidence 33345555443233332 3555566666667889999999999999999987 5 479999999 8887654 45
Q ss_pred CccccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 125 GLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 125 gl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+...+.-.+....-.+.+||.|++-.+|+|+. ..+...++.+++|.|||||.+++..
T Consensus 109 gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 109 GLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp TSSSTEEEEES-GGG---S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCCceEEEEeeccccCCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 764322211222222346999999999999994 3478899999999999999999874
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.46 E-value=1.6e-13 Score=117.84 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=74.5
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCCCCccceeeehhhhc
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
++|||+|||+|.++..+++... ..+++++|.| +++..+.++ |+. .......+..+ ++++||+|++..+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FPDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CCCCCCEeehHHHHH
Confidence 3799999999999998876521 2479999999 888876654 442 22332223333 457999999999999
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
|+. +...+|.++.|+|||||++++.+.
T Consensus 79 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 985 578999999999999999999863
No 38
>PRK06202 hypothetical protein; Provisional
Probab=99.46 E-value=2.5e-13 Score=117.90 Aligned_cols=102 Identities=13% Similarity=0.212 Sum_probs=76.1
Q ss_pred CCCceEeeeccccchHHHHHhcC---CCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccceeeehhh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP---KSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~---~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
.+..+|||+|||+|.++..|.+. .....+|+++|.+ +|+..+.++.. +......++.+++.+++||+|+|+.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 44679999999999998887641 1123479999999 99998877632 11223334567765689999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
|||+++ .++..+|.||.|++| |.+++.|.
T Consensus 139 lhh~~d-~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 139 LHHLDD-AEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred eecCCh-HHHHHHHHHHHHhcC--eeEEEecc
Confidence 999964 246789999999999 66677763
No 39
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=2.7e-13 Score=127.13 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=81.0
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--cc-ccccccccCCCCCCCccc
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LI-GIYHDWCEGFSTYPRTYD 145 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~-~~~~~~~e~l~~~p~sFD 145 (235)
+..++..++..+..+|||+|||+|+++..+++.. ...|+++|.| +++..+.++. +. .... ......+++||
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~~~l~~~fD 230 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRL---QDYRDLNGQFD 230 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEE---CchhhcCCCCC
Confidence 4444445555557899999999999999998753 2379999999 9999887763 21 1111 11111258999
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+|++..+|+|+.. .++..++.++.|+|||||++++.+
T Consensus 231 ~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999843 467899999999999999999975
No 40
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.46 E-value=9.6e-14 Score=118.93 Aligned_cols=97 Identities=23% Similarity=0.385 Sum_probs=82.5
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-Cccceeeehhhh
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHANGVF 153 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~~vl 153 (235)
.|.+ +.+|||+|||.|.+.++|.+.. .....|++++ +.+..+.+||+.....|.-+.|+.|| ++||.|+.+.+|
T Consensus 10 ~I~p--gsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 10 WIEP--GSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTL 85 (193)
T ss_pred HcCC--CCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence 3544 5799999999999999999853 2468899998 88889999999887788778898777 999999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+++. .++.+|.||-|| |...|++
T Consensus 86 Q~~~---~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 86 QAVR---RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HhHh---HHHHHHHHHHHh---cCeEEEE
Confidence 9985 688999999877 5577777
No 41
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.46 E-value=1.2e-13 Score=120.46 Aligned_cols=101 Identities=10% Similarity=0.116 Sum_probs=76.0
Q ss_pred CCceEeeeccccchHHHHHhcCC-CceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPK-SWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~-~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
+..+|||+|||+|.++..|.+.. .-..+++++|.| +|+..+.++ +. +..++...+.+++ ..||+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC--CCCCEEeeec
Confidence 35689999999999998887641 013479999999 999887665 21 2223333333442 4699999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
++||+.+ .+...+|.++.|+|||||.++++|.
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9999853 3568999999999999999999974
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=7e-13 Score=112.30 Aligned_cols=126 Identities=16% Similarity=0.298 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc--ccccccc
Q 026623 61 KLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL--IGIYHDW 133 (235)
Q Consensus 61 ~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl--~~~~~~~ 133 (235)
..|++....-..++..+. ..+|||+|||+|.++..|+.... ...|+++|.+ +|+..+.+ .|+ +..++..
T Consensus 25 ~~~~~~~~d~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d 100 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR 100 (181)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc
Confidence 455655544332233332 57999999999998887764321 2469999999 78775433 344 2334444
Q ss_pred ccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc
Q 026623 134 CEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM 198 (235)
Q Consensus 134 ~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~ 198 (235)
.+.++ .+++||+|+|+. ++ ++..++.++.|+|||||.+++........++..+.+.+
T Consensus 101 ~~~~~-~~~~fD~I~s~~-~~------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 101 AEDFQ-HEEQFDVITSRA-LA------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC 157 (181)
T ss_pred hhhcc-ccCCccEEEehh-hh------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh
Confidence 45443 358999999976 43 45688999999999999999998776666766666553
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=4.8e-13 Score=115.26 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=74.8
Q ss_pred CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+|||+|||+|.++..|... + ..+++++|.| ++++.+.++.. +...+..+.. |+.+++||+|+++.+|+|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~- 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN- 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-
Confidence 568999999999999999875 3 2479999999 99998877521 2223333333 54459999999999999984
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
..++..++.||.|++ +++++|.+
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 456889999999998 57888875
No 44
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=3.1e-13 Score=125.16 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=89.3
Q ss_pred CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc---cccccccccCCCCCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
...+|||+|||+|.++..+.+. + ..+++++|.+ +|+..+.++.- +..++...+.+++.+++||+|+++.+|+|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 3568999999999998887653 2 2479999999 99998877531 33345555667866699999999999998
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEEeCh--H---------------HHHHHHHHHhccCceeE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFRDEV--D---------------ALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--~---------------~~~~i~~~~~~~~W~~~ 203 (235)
++ +...+|+|+.|+|||||.+++.+.. . ..+++..++++..++..
T Consensus 191 ~~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 191 WP---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 86 5689999999999999999886421 0 12455666777777654
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.41 E-value=1.2e-12 Score=110.84 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=79.3
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----cccccccccCCCCCCCccceeeehh
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL----IGIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl----~~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
+...+..+|||+|||+|.++..+.....-...++++|.+ .++..+.++.. +...+.....+++.+++||+|+++.
T Consensus 35 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred hccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence 333356799999999999999888753211479999998 88887766542 2233333445664458999999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+++|.. ++..+|.++.++|||||++++.+
T Consensus 115 ~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 115 GLRNVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 998874 68899999999999999999876
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=6.8e-13 Score=126.45 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=80.5
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Cc---ccccccccc--CCCCCCCccc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GL---IGIYHDWCE--GFSTYPRTYD 145 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl---~~~~~~~~e--~l~~~p~sFD 145 (235)
++..+......+|||+|||+|.++..|++.. ..|+++|.+ +++..+.++ +. +..+....+ .+++.+++||
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 3444444445689999999999999999764 379999999 898876543 21 222222222 3554458999
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+|+|+.+++|+++ .++..+|.++.|+|||||++++.|
T Consensus 106 ~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 106 LIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred EEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999999999964 347899999999999999999986
No 47
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.40 E-value=4.8e-12 Score=105.77 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCCCCCCccceeeehhhhcc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
..+|||+|||+|.++..+...+. .|+++|.+ +++..+.++ ++ +..++..+ +...+++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDL--FKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc--ccccCCcccEEEECCCCCC
Confidence 46899999999999999998753 69999999 888876553 22 11222221 1223479999999988876
Q ss_pred CCCCC------------------ChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEeec
Q 026623 156 YENTC------------------KPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKMMD 206 (235)
Q Consensus 156 ~~~~~------------------~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~~~ 206 (235)
..+.. .+..+|.++.|+|||||.+++.+.... ...+.++++...+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 53210 146789999999999999999875543 5566677777777766543
No 48
>PRK06922 hypothetical protein; Provisional
Probab=99.39 E-value=5e-13 Score=132.07 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=78.9
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c-cccccccccCCC--CCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L-IGIYHDWCEGFS--TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l-~~~~~~~~e~l~--~~p~sFDlV~a~~v 152 (235)
...+|||+|||+|.++..|+.... ..+++++|.| .|++.+.++. . +..++..+..+| +.+++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 457999999999999888876421 3589999999 8999877652 1 122334455566 44599999999999
Q ss_pred hccCC----------CCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 153 FSLYE----------NTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 153 l~h~~----------~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+||+. +..++..+|+|+.|+|||||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 98752 123578999999999999999999973
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.39 E-value=1.1e-12 Score=112.56 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=86.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccc-cCCC--CCCCccceeeeh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWC-EGFS--TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~-e~l~--~~p~sFDlV~a~ 150 (235)
...+|||+|||+|.++..|++... ..+|+++|.+ +++..+.++ ++ +..++..+ +.++ +.+++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 467999999999999999976521 2479999999 888876553 33 22344444 5555 345899999986
Q ss_pred hhhccCC-----CCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeE
Q 026623 151 GVFSLYE-----NTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 151 ~vl~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~ 203 (235)
....... .......+|.++.|+|||||.|++.. .......+.....+-.|.+.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 5442111 11235789999999999999999975 55566666666666667766
No 50
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=1.2e-12 Score=112.59 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=92.0
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccccccccCCC-CCC-Cccceeeeh
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIYHDWCEGFS-TYP-RTYDLIHAN 150 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~~~~~e~l~-~~p-~sFDlV~a~ 150 (235)
.|....++++||+|||.|.|+..|+.+ .-.++.+|++ ..+..+.+|- +..+ .-....+| +.| ++||||+++
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V-~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHV-EWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSE-EEEES-TTT---SS-EEEEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCe-EEEECcCCCCCCCCCeeEEEEe
Confidence 478888999999999999999999986 4679999999 8999888873 2221 00112344 334 999999999
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH----------HHHHHHHHHhccCceeEeecCCCCCCCCceEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD----------ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIA 220 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~----------~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~ 220 (235)
-|++++.+..++..++..+...|+|||.+|+....+ -.+.|.+++...-=++....-. |....|.-|++
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 192 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECR-GGSPNEDCLLA 192 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE--SSTTSEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEc-CCCCCCceEee
Confidence 999999655568899999999999999999986332 1233445544443344322222 22245666666
Q ss_pred E
Q 026623 221 V 221 (235)
Q Consensus 221 ~ 221 (235)
+
T Consensus 193 ~ 193 (201)
T PF05401_consen 193 R 193 (201)
T ss_dssp E
T ss_pred e
Confidence 4
No 51
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.38 E-value=1.6e-13 Score=120.51 Aligned_cols=140 Identities=23% Similarity=0.306 Sum_probs=101.2
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCC--CCCCccceeeehhhh
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFS--TYPRTYDLIHANGVF 153 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~--~~p~sFDlV~a~~vl 153 (235)
..+..+++||+|||||-++.+|++. +..++++|+| +||..+.++|+-. .++.....|. .-++.||+|.+..||
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 4566899999999999999999875 3469999999 9999999999733 2333223232 345899999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-----h--------H---HHHHHHHHHhccCceeE-eecC----CCCCC
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE-----V--------D---ALNKVRKFAEGMRWDTK-MMDH----EDGPL 212 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-----~--------~---~~~~i~~~~~~~~W~~~-~~~~----~~~~~ 212 (235)
.++- +++.++.-..+.|.|||.|++|-. - . .-..+.....+-..++. +.++ +.+..
T Consensus 199 ~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~p 275 (287)
T COG4976 199 PYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEP 275 (287)
T ss_pred Hhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCC
Confidence 9985 789999999999999999999931 0 0 02346666666666654 2222 22222
Q ss_pred CCceEEEEEec
Q 026623 213 MPEKILIAVKQ 223 (235)
Q Consensus 213 ~~e~~l~~~k~ 223 (235)
.+..+.|++|+
T Consensus 276 v~G~L~iark~ 286 (287)
T COG4976 276 VPGILVIARKK 286 (287)
T ss_pred CCCceEEEecC
Confidence 45566777664
No 52
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.38 E-value=2.6e-12 Score=111.01 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=81.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCC--------CCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--------TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--------~~p~sFDlV~a~~v 152 (235)
+..+|||+|||+|.++..+++...-...|+++|.+.|... .+ +..++...+..+ +.+.+||+|+|+..
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~-v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VG-VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CC-cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 3568999999999999888775211247999999864321 12 222333333332 23489999999876
Q ss_pred hccCCCCC-C-------hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc--CceeE-eecCC-CCCCCCceEEEE
Q 026623 153 FSLYENTC-K-------PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM--RWDTK-MMDHE-DGPLMPEKILIA 220 (235)
Q Consensus 153 l~h~~~~~-~-------~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~--~W~~~-~~~~~-~~~~~~e~~l~~ 220 (235)
.+...+.. + .+.+|.++.|+|||||.|++..... +.+..++..+ +|... ..... .-....|.+++|
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 65432110 1 2579999999999999999965321 0111222222 34332 22111 222268999999
Q ss_pred Ee
Q 026623 221 VK 222 (235)
Q Consensus 221 ~k 222 (235)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 63
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.36 E-value=3.8e-12 Score=108.86 Aligned_cols=100 Identities=22% Similarity=0.250 Sum_probs=76.8
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----c---cccccccccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----L---IGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l---~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
+..+|||+|||+|.++..+.....-..+++++|.+ .++..+.++- + +..++...+.+++.+++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 45789999999999998887653212479999999 8888776652 1 22333334445544589999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++|.. ++..+|.++.++|+|||.+++.+
T Consensus 131 l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 98774 67899999999999999999875
No 54
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.34 E-value=1.5e-12 Score=116.15 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=75.7
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cc----cccccccCCCCCCCccceeeehh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IG----IYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~----~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
+++|||+|||+|-+...|+..+ .+|+++|.+ +|+.+|.+..- .+ .+.-.|+.+--....||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4789999999999999999887 579999999 89998877621 11 01111122221226699999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|++|+. ++..++.-+-+.|||||.++|++
T Consensus 167 vleHV~---dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 167 VLEHVK---DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHh---CHHHHHHHHHHHhCCCCceEeee
Confidence 999995 78999999999999999999996
No 55
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.34 E-value=3.3e-12 Score=107.68 Aligned_cols=137 Identities=11% Similarity=0.072 Sum_probs=79.8
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCC--------CCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--------TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--------~~p~sFDlV~a~~v 152 (235)
+..+|||+|||+|+++..+..+..-...|+++|.+.+.. ..++ ..+.......+ +.+++||+|+++..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~---~~~i-~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP---IENV-DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc---CCCc-eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 457999999999999888876421123689999985431 1122 12211112111 22478999998653
Q ss_pred h--------ccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCceeEe-ecCCCCCCCCceEEEEE
Q 026623 153 F--------SLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWDTKM-MDHEDGPLMPEKILIAV 221 (235)
Q Consensus 153 l--------~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~~~~-~~~~~~~~~~e~~l~~~ 221 (235)
. .|+...+.++.+|.++.|+|||||.+++.. ..+.+.++-..++..-|.+.. .+.-......|++++|.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2 121111124689999999999999999953 222222222222222344443 23333444689999994
No 56
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.33 E-value=4e-12 Score=107.68 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=70.9
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-CCCCccceeeeh
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-TYPRTYDLIHAN 150 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-~~p~sFDlV~a~ 150 (235)
+.+.+.. ..+|||+|||+|.++..|.+... .+++++|.+ +++..+.++++.-...+..+.++ +.+++||+|+|+
T Consensus 7 i~~~i~~--~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 7 ILNLIPP--GSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred HHHhcCC--CCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 3434443 45899999999999999976432 357899999 88888877764322222223354 334899999999
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCC
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPE 176 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPG 176 (235)
.+|+|++ ++..+|+||.|+++++
T Consensus 83 ~~l~~~~---d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 83 QTLQATR---NPEEILDEMLRVGRHA 105 (194)
T ss_pred hHhHcCc---CHHHHHHHHHHhCCeE
Confidence 9999985 6889999999987753
No 57
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=4.4e-12 Score=108.97 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=71.5
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCcc-ccccccccCCCCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGLI-GIYHDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
+..++||+|||.|.-+.+|+++| .+|+++|.| ..++ ++.++++. .......+... +++.||+|++..||+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FPEEYDFIVSTVVFM 105 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEEEEESSGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-ccCCcCEEEEEEEec
Confidence 45699999999999999999997 369999998 5665 34455663 22222222233 458999999999999
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
|++ +..+..++..|..-|+|||++++.
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 984 567889999999999999998884
No 58
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=6.7e-12 Score=107.94 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=74.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-------cccccccccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-------IGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-------~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
...+|||+|||+|.++..|++.+ ..|+++|.+ +|+..+.++.. +...+..++. .+++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS---LCGEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh---CCCCcCEEEEhhH
Confidence 46799999999999999998764 369999999 89988777531 1222222222 2389999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
++|++. .++..++.++.|+++||+++.+...
T Consensus 129 l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 129 LIHYPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 998853 4678999999999998888777643
No 59
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.32 E-value=1.4e-11 Score=108.74 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT 159 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~ 159 (235)
...+|||+|||+|.++.++...+. ..|+++|.+ .++..+.++.-.....+.. .++..+.+||+|+|+...+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~-~~~~~~~~fD~Vvani~~~----- 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV-YLPQGDLKADVIVANILAN----- 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE-EEccCCCCcCEEEEcCcHH-----
Confidence 357999999999999888877653 359999999 8888776652111110000 1221123799999975432
Q ss_pred CChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeec
Q 026623 160 CKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMD 206 (235)
Q Consensus 160 ~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~ 206 (235)
.+..++.++.|+|||||+++++... +....+...+++..+.+....
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence 3468899999999999999999754 345567777788888776443
No 60
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=8.1e-12 Score=112.88 Aligned_cols=129 Identities=17% Similarity=0.281 Sum_probs=92.0
Q ss_pred cccccccchH-HHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcC
Q 026623 52 TGKSYQEDSK-LWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERG 125 (235)
Q Consensus 52 ~~~~f~~d~~-~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rg 125 (235)
+-+.|+..+. .=-.+...+..++..++-.++.+|||+|||-|+++.++++.- ..+|+++++| +++..+. ++|
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC
Confidence 4444555542 211222334445556666678999999999999999998862 2479999999 8888644 457
Q ss_pred ccccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 126 LIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 126 l~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+...++-.-+....+++.||-|++-.+|+|+. ..+...++.-++++|+|||.+++-.
T Consensus 120 l~~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 120 LEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CCcccEEEeccccccccccceeeehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEE
Confidence 75332221233444556699999999999995 3578999999999999999998874
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.31 E-value=9.5e-12 Score=112.21 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=80.9
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccccccccc-CCCCCCCccceeeehhhhcc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCE-GFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e-~l~~~p~sFDlV~a~~vl~h 155 (235)
..+|||+|||+|.++.+++..+. ..|+++|.+ .+++.+.++ ++...+...+. ..+..++.||+|+|+.+.+
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 47999999999999888877653 479999999 888877664 22111111112 1233358999999986653
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEe
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~ 204 (235)
.+..++.++.|+|||||+++++... +....+.+.+++. |++..
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cceee
Confidence 3468999999999999999999743 3355666666665 76653
No 62
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.31 E-value=7.6e-12 Score=109.20 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=106.8
Q ss_pred HHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccCCCCCCCccc
Q 026623 72 KMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEGFSTYPRTYD 145 (235)
Q Consensus 72 ~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~l~~~p~sFD 145 (235)
.++.++.....++|.|+|||+|+.++.|..+-. ...|+++|.| +||..+++|.. .+.++.|| .+..+|
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-----p~~~~d 94 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-----PEQPTD 94 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-----CCCccc
Confidence 366677777889999999999999999988621 3579999999 99999988875 23455555 248999
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--eChH--HHHHHHHHHhccCceeEeecCC--CCC--------
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--DEVD--ALNKVRKFAEGMRWDTKMMDHE--DGP-------- 211 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d~~~--~~~~i~~~~~~~~W~~~~~~~~--~~~-------- 211 (235)
++++|.+|+.++ +-..+|...---|.|||.+.+. |+.+ .-..|.+.++..-|.....+.. ..+
T Consensus 95 llfaNAvlqWlp---dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 95 LLFANAVLQWLP---DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred hhhhhhhhhhcc---ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 999999999997 5578888899999999999998 3332 2335566676666654432210 000
Q ss_pred ----CCCceEEEEEeccccC
Q 026623 212 ----LMPEKILIAVKQYWVG 227 (235)
Q Consensus 212 ----~~~e~~l~~~k~~w~~ 227 (235)
....+|=|+.+.|-.+
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHhCcccceeeeeeeecccc
Confidence 1345666777777655
No 63
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.29 E-value=9.1e-12 Score=113.43 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=80.8
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc--ccHHHHHHcCccc---ccc---ccccCCCCCC
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK--NTLGVIYERGLIG---IYH---DWCEGFSTYP 141 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s--~~L~~~~~Rgl~~---~~~---~~~e~l~~~p 141 (235)
+.++.+.|.+-.+++|||||||.|.++-.|...+. ..|+++|.+ -.+++.+-+.+++ .++ .--|.+|. .
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 34455666666789999999999999989988773 469999987 3444433332221 111 01255665 6
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
++||+|+|-.||.|.+ ++...|.++...|||||.+|+-
T Consensus 181 ~~FDtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred CCcCEEEEeeehhccC---CHHHHHHHHHHhhCCCCEEEEE
Confidence 9999999999999976 7899999999999999999976
No 64
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.29 E-value=2.5e-11 Score=102.10 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=80.8
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDlV~a 149 (235)
+......+|||+|||+|.++..++.... ...|+++|.+ .+++.+.++ ++. ..+.... ....++.||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcCCCEEEE
Confidence 3333567999999999999988876521 2479999998 888876543 321 1121111 1123578999998
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCce
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRWD 201 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W~ 201 (235)
+.... .+..++.++.|+|||||.+++.. ..+...++.+++++..+.
T Consensus 104 ~~~~~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 104 GGSGG------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred CCCcc------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 76543 45689999999999999999986 334455666777777764
No 65
>PRK04266 fibrillarin; Provisional
Probab=99.28 E-value=6.3e-11 Score=103.92 Aligned_cols=140 Identities=13% Similarity=0.073 Sum_probs=81.2
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCccccccccccCC---CCCCCccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGLIGIYHDWCEGF---STYPRTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl~~~~~~~~e~l---~~~p~sFDlV~ 148 (235)
+...+..+|||+|||+|.++..|++.-. ...|+++|.+ .|++.+. ++..+..+....... ...+++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 3434467999999999999999987521 2369999999 8887433 222222222222211 11246799998
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEE------EeCh----HHHHHHHHHHhccCceeE-eecCCCCCCCCceE
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIF------RDEV----DALNKVRKFAEGMRWDTK-MMDHEDGPLMPEKI 217 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii------~d~~----~~~~~i~~~~~~~~W~~~-~~~~~~~~~~~e~~ 217 (235)
+. ..+......+|.|+.|+|||||.++| .|.. .......+.+++-..+.. ..+..... .++-.
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~-~~h~~ 220 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYH-KDHAA 220 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCc-CCeEE
Confidence 53 22111224568999999999999999 3321 112223355554455543 33322111 34566
Q ss_pred EEEEec
Q 026623 218 LIAVKQ 223 (235)
Q Consensus 218 l~~~k~ 223 (235)
++.+|+
T Consensus 221 ~v~~~~ 226 (226)
T PRK04266 221 VVARKK 226 (226)
T ss_pred EEEEcC
Confidence 666653
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=1.9e-11 Score=94.20 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=69.0
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccC-CCCCCCccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEG-FSTYPRTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~-l~~~p~sFDlV~ 148 (235)
+......+|||+|||+|.++..+++... ...|+++|.+ .+++.+.+. ++. ..+....+. ++..+++||+|+
T Consensus 15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEE
Confidence 4433456999999999999999987521 2579999999 888765432 332 111111111 232347999999
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+....+ ....++.++.|+|||||+|++.
T Consensus 94 ~~~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCcch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 866543 3468999999999999999986
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=6.7e-11 Score=97.97 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=87.0
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc----c-ccccccccCCCCCCCccceeeeh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL----I-GIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl----~-~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
+..+|||+|||+|.++..|+..+ .+++++|.+ +++..+.++ ++ + -...|+.+. +.+++||+|+++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEEC
Confidence 45689999999999999998873 579999999 888876433 22 1 122333332 223689999987
Q ss_pred hhhccCCC------------------CCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCCCCC
Q 026623 151 GVFSLYEN------------------TCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHEDGP 211 (235)
Q Consensus 151 ~vl~h~~~------------------~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~~~~ 211 (235)
..+.+..+ ...+..++.++.|+|||||.+++.... .....+..++....|++.......-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 65532100 112467899999999999998876432 12445677777777876543223233
Q ss_pred CCCceEEEEE
Q 026623 212 LMPEKILIAV 221 (235)
Q Consensus 212 ~~~e~~l~~~ 221 (235)
++.=.++..+
T Consensus 178 ~~~~~~~~~~ 187 (188)
T PRK14968 178 FEELIVLELV 187 (188)
T ss_pred CceEEEEEEe
Confidence 2333344444
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.25 E-value=1.8e-11 Score=104.14 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=78.8
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC--CCC-Cccceeeehh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS--TYP-RTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~--~~p-~sFDlV~a~~ 151 (235)
...|||+|||+|.++..|+.... ..+++++|.+ .++..+.++ |+ +..++..+..++ +++ ++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46899999999999999987532 3589999999 888866543 33 223333333332 244 6999999865
Q ss_pred hhccC-----CCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHH-HhccCcee
Q 026623 152 VFSLY-----ENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKF-AEGMRWDT 202 (235)
Q Consensus 152 vl~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~-~~~~~W~~ 202 (235)
-..+. +.+.....+|.++.|+|||||.|++.. ..+....+... ...-+|+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 43221 122234689999999999999999874 44444444333 33334543
No 69
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.25 E-value=5.4e-11 Score=102.03 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=72.0
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCCCccceeeehhhhc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
.+..+|||+|||+|.++..|.+.+ ..++++|.+ +++..+.++ ++...++-....++..+++||+|++..+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 345799999999999999998765 359999999 899887665 221111111123554558999999999999
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
|+++ .++..++.++.|++++|+.+.+.
T Consensus 139 ~~~~-~~~~~~l~~l~~~~~~~~~i~~~ 165 (230)
T PRK07580 139 HYPQ-EDAARMLAHLASLTRGSLIFTFA 165 (230)
T ss_pred cCCH-HHHHHHHHHHHhhcCCeEEEEEC
Confidence 8753 46789999999988665554443
No 70
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.23 E-value=2.9e-11 Score=109.24 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=73.7
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHH----cCccc---cccccccCCCCCCCccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYE----RGLIG---IYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~----Rgl~~---~~~~~~e~l~~~p~sFDlV~a 149 (235)
+...+..+|||+|||+|.++..+.++.. ..+++.+|.+.+++.+.+ .|+.. .+.......+ +| .+|+|++
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-CC-CCCEEEe
Confidence 3444568999999999999998887532 247899998877776543 35422 2222211112 23 4799999
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+.++|++.+ .....+|+++.|.|||||.++|.|
T Consensus 222 ~~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999988742 345789999999999999999997
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=2.8e-11 Score=103.56 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=74.7
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCC-CCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTY-PRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~-p~sFDlV~a~~vl 153 (235)
..+|||+|||+|.++..+.+.+ ..++++|.+ .++..+.++ ++ +.......+.++.. +++||+|+++.++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5689999999999999888754 359999999 787766553 22 22223333334433 3899999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+|.. ++..+|.++.++|+|||.+++++.
T Consensus 123 ~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 9885 678999999999999999999863
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.22 E-value=7.5e-11 Score=109.27 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=86.2
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccccccccccCCCCCCCccceeeehhhhccC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLY 156 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~ 156 (235)
..+|||+|||+|.++..+.++.. ...|+++|.+ .++..+.+ .++...+. +.+.++..++.||+|+|+--||+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 34799999999999999987632 2469999999 88886654 23322221 122234345899999999999753
Q ss_pred CC--CCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623 157 EN--TCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ 223 (235)
Q Consensus 157 ~~--~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~ 223 (235)
.. ....+.++.++.|.|||||.++|..+. ++-..+++..... ++.. +. .+=+|+-++|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEcc
Confidence 21 123579999999999999999887643 2333444443332 2221 11 35567777653
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=3e-11 Score=103.68 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=70.0
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCcc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTY 144 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sF 144 (235)
+++.+...+..+|||+|||+|.+++.|.+.-.-...|+++|.+ +++..+.++ |+ +..++..+.......++|
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~f 143 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF 143 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCc
Confidence 3444544456799999999999998887531001369999999 888766543 43 223333333222234799
Q ss_pred ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
|+|+++..+.|++ .|+.|+|||||.+++...
T Consensus 144 D~Ii~~~~~~~~~---------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 144 DAIIVTAAASTIP---------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cEEEEccCcchhh---------HHHHHhcCcCcEEEEEEc
Confidence 9999988876553 478899999999998653
No 74
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=4.9e-11 Score=103.57 Aligned_cols=116 Identities=21% Similarity=0.262 Sum_probs=83.1
Q ss_pred HHHHHHHHH-hh----hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----C-c--ccccc
Q 026623 65 KHVNAYKKM-NS----LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----G-L--IGIYH 131 (235)
Q Consensus 65 ~~v~~y~~~-l~----~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----g-l--~~~~~ 131 (235)
+.+++|++. +. .++......||.+|||||.--.+.-..+ .-.|+.+|.+ +|-.++..+ . + ...++
T Consensus 55 e~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p--~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvv 132 (252)
T KOG4300|consen 55 EIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKP--INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVV 132 (252)
T ss_pred HHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCC--CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEe
Confidence 344556652 22 2344444578999999997655555443 2469999999 777764332 1 1 22457
Q ss_pred ccccCCC-CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 132 DWCEGFS-TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 132 ~~~e~l~-~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
...|.+| ..+.|+|.|+|..+|.-. .++++.|.|+.|+|||||.+++-++.
T Consensus 133 a~ge~l~~l~d~s~DtVV~TlvLCSv---e~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 133 ADGENLPQLADGSYDTVVCTLVLCSV---EDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred echhcCcccccCCeeeEEEEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 7778898 455999999999999744 48899999999999999999999854
No 75
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.21 E-value=1.3e-10 Score=98.86 Aligned_cols=146 Identities=14% Similarity=0.242 Sum_probs=90.5
Q ss_pred ccccccccc--chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--
Q 026623 50 GVTGKSYQE--DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-- 124 (235)
Q Consensus 50 g~~~~~f~~--d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-- 124 (235)
|.....|.. +...++..++.- .+..++.....+|||+|||+|.++..++..-.....|+++|.+ .+++.+.++
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~ 86 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE 86 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 333444544 223555545321 2333444556799999999999988775431112479999998 888876543
Q ss_pred --Ccc---ccccccc-cCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhc
Q 026623 125 --GLI---GIYHDWC-EGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEG 197 (235)
Q Consensus 125 --gl~---~~~~~~~-e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~ 197 (235)
|+. ..+.... +.++..++.||+|++... ..++..++.++.|+|||||.+++.. ..+.+.++...++.
T Consensus 87 ~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 87 KFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 421 1222222 223333478999998432 2367899999999999999999843 33445566666666
Q ss_pred cCceeE
Q 026623 198 MRWDTK 203 (235)
Q Consensus 198 ~~W~~~ 203 (235)
..++..
T Consensus 161 ~g~~~~ 166 (198)
T PRK00377 161 IGFNLE 166 (198)
T ss_pred cCCCeE
Confidence 665544
No 76
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.20 E-value=5.6e-11 Score=102.70 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCC-CCCCccceeeehh
Q 026623 79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFS-TYPRTYDLIHANG 151 (235)
Q Consensus 79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~-~~p~sFDlV~a~~ 151 (235)
..+..+|||+|||+|.++..+.+.+ .+++++|.+ .++..+.++ ++. ...+...+.++ ..+++||+|+++.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 3346789999999999999998764 469999999 777766654 221 11121112233 2348999999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+++|.. +...+|.++.|+|+|||.+++.+.
T Consensus 123 ~l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 123 MLEHVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred HhhccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 999885 678999999999999999999863
No 77
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=101.60 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=96.0
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccc--ccccccCCCCCCCccceeeehhhh
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGI--YHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~--~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
+.....+-|||||||+|--+..|.+.+ .-.+++|+| .||..+.+|-+-|. ..|--|.+||-|+|||-|++-..+
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 444457789999999999999998876 347899999 99999998766543 345558899999999999986666
Q ss_pred ccC----CCCCC----hHHHHHHHhhhhcCCcEEEEEeCh---HHHHHHHHHHhccCcee-EeecCCCCCCCCceEEEE
Q 026623 154 SLY----ENTCK----PEDILLEMDRILRPEGAVIFRDEV---DALNKVRKFAEGMRWDT-KMMDHEDGPLMPEKILIA 220 (235)
Q Consensus 154 ~h~----~~~~~----~~~~L~Em~RVLRPGG~lii~d~~---~~~~~i~~~~~~~~W~~-~~~~~~~~~~~~e~~l~~ 220 (235)
..+ +...+ +..++.-++.+|++|+..++.--. +.++.|..-+..--+.- ...|.+....++.-+||.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 532 11111 336778899999999999999433 33444444333322221 134554444455566665
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.19 E-value=1.4e-10 Score=108.93 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=87.8
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-----cccccccccCCCCC-CC
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-----IGIYHDWCEGFSTY-PR 142 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-----~~~~~~~~e~l~~~-p~ 142 (235)
++.+......+|||+|||+|.++..+..+.. ...|+++|.| .+++.+.+. +. +..+.+ ..+... +.
T Consensus 221 L~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~ 297 (378)
T PRK15001 221 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPF 297 (378)
T ss_pred HHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCC
Confidence 4444443346899999999999999987532 3579999999 888876543 21 122222 223333 36
Q ss_pred ccceeeehhhhccCC--CCCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHHhccCceeEeecCCCCCCCCceEE
Q 026623 143 TYDLIHANGVFSLYE--NTCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFAEGMRWDTKMMDHEDGPLMPEKIL 218 (235)
Q Consensus 143 sFDlV~a~~vl~h~~--~~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l 218 (235)
+||+|+|+--||... ......+++.+..|+|||||.+++.-+. ++...++++.. .+... +...+=+|+
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~v----a~~~kf~vl 369 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTI----ATNNKFVVL 369 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEE----ccCCCEEEE
Confidence 899999998876421 1112458899999999999999998543 34445555332 22222 112355677
Q ss_pred EEEe
Q 026623 219 IAVK 222 (235)
Q Consensus 219 ~~~k 222 (235)
-++|
T Consensus 370 ~a~k 373 (378)
T PRK15001 370 KAVK 373 (378)
T ss_pred EEEe
Confidence 7776
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=1.1e-10 Score=101.32 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=70.4
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH-HHcCcc-----------------ccccccccCCCCC-C
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI-YERGLI-----------------GIYHDWCEGFSTY-P 141 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~-~~Rgl~-----------------~~~~~~~e~l~~~-p 141 (235)
..+|||+|||.|..+.+|+++| .+|+++|+| ..++.+ .+.|+. ..+......++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4699999999999999999986 379999999 777754 333432 1122111222322 2
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.+||+|....+|+|++ ......++..|.|.|||||++++.
T Consensus 112 ~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 6799999999999985 345578999999999999974443
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.16 E-value=4.7e-11 Score=98.81 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=60.3
Q ss_pred eecCcc-ccHHHHHHcCc---------cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEE
Q 026623 110 VPTTAK-NTLGVIYERGL---------IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAV 179 (235)
Q Consensus 110 ~~~D~s-~~L~~~~~Rgl---------~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~l 179 (235)
+++|.| +||+.+.+|.- +..++..++.+|+.+++||+|++..+++|++ +...+|+|++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 478999 99999865421 3455677788997679999999999999885 7789999999999999999
Q ss_pred EEEeC
Q 026623 180 IFRDE 184 (235)
Q Consensus 180 ii~d~ 184 (235)
+|.|.
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 99974
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.12 E-value=2.1e-10 Score=98.83 Aligned_cols=102 Identities=19% Similarity=0.074 Sum_probs=68.6
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYD 145 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFD 145 (235)
++..+...+..+|||+|||+|.+++.|++...-...|+++|.+ ++++.+.++ |+ +...+............||
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCC
Confidence 3444444557899999999999999988753212359999998 888776554 43 2223322222221237899
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+|+++....+ +..++.+.|+|||++++.-
T Consensus 149 ~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 149 RIYVTAAGPK---------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEEcCCccc---------ccHHHHHhcCcCcEEEEEE
Confidence 9998665543 3456789999999999864
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=2.2e-10 Score=98.95 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=68.9
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYD 145 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFD 145 (235)
++..+...+..+|||+|||+|.+++.|+....-...|+++|.+ ++++.+.++ |+ +...+..+.......+.||
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcC
Confidence 4444444557899999999999998887642112479999999 888876654 33 2233333322222238999
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+|+++..++++ ..++.+.|||||.+++--
T Consensus 148 ~I~~~~~~~~~---------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDI---------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccc---------hHHHHHhhCCCcEEEEEE
Confidence 99997766443 246677899999999864
No 83
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.11 E-value=7.8e-11 Score=104.13 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=76.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc-----cccccCCCCC--CCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY-----HDWCEGFSTY--PRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~-----~~~~e~l~~~--p~sFDlV~a~~vl 153 (235)
-+.++|+|||+|--+..++... -+|+++|.| .||+++...-.+... ....|..++. ++|.|+|+|...+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 4489999999994444444443 379999999 999987554322111 1111223333 7999999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCc-EEEEE---eChHHHHHHHHHHhccCce
Q 026623 154 SLYENTCKPEDILLEMDRILRPEG-AVIFR---DEVDALNKVRKFAEGMRWD 201 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG-~lii~---d~~~~~~~i~~~~~~~~W~ 201 (235)
| +++++.+++++.|||||.| ++.+= |......++..+..+++|.
T Consensus 111 H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 111 H----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred H----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 5 5699999999999999977 43332 3222345556666666664
No 84
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.11 E-value=1.3e-09 Score=96.12 Aligned_cols=136 Identities=21% Similarity=0.315 Sum_probs=87.0
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---Cc---ccccc-ccccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---GL---IGIYH-DWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---gl---~~~~~-~~~e~l~~~p~sFDlV~a~~v 152 (235)
+..+|||+|||+|.++..|+.... ...++++|.+ .++..+.+. +. +..++ |+.+.+ .+++||+|+++--
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npP 184 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--PGGRFDLIVSNPP 184 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--CCCceeEEEECCC
Confidence 456899999999999999987521 2479999999 888876654 22 11222 221211 2479999998522
Q ss_pred h------c--------cCCC---------CCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCce-eEeecCC
Q 026623 153 F------S--------LYEN---------TCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWD-TKMMDHE 208 (235)
Q Consensus 153 l------~--------h~~~---------~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~-~~~~~~~ 208 (235)
+ + |.+. ...+..++.++.++|||||++++.-.......+..++++..+. +..+ .
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~--~ 262 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR--K 262 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe--c
Confidence 1 1 1100 0113578899999999999999976554455677777665564 3332 1
Q ss_pred CCCCCCceEEEEEe
Q 026623 209 DGPLMPEKILIAVK 222 (235)
Q Consensus 209 ~~~~~~e~~l~~~k 222 (235)
+ -.+.+++++++|
T Consensus 263 d-~~~~~r~~~~~~ 275 (275)
T PRK09328 263 D-LAGRDRVVLGRR 275 (275)
T ss_pred C-CCCCceEEEEEC
Confidence 1 226788988865
No 85
>PLN03075 nicotianamine synthase; Provisional
Probab=99.10 E-value=1.2e-09 Score=99.52 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=91.4
Q ss_pred CCceEeeeccccchHHHHHhcCC-CceeEEeecCcc-ccHHHHHH-----cCc---cccc-cccccCCCCCCCccceeee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPK-SWVMNVVPTTAK-NTLGVIYE-----RGL---IGIY-HDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~-~~~~~V~~~D~s-~~L~~~~~-----Rgl---~~~~-~~~~e~l~~~p~sFDlV~a 149 (235)
..++|+|+|||.|++++.+.... .-...++++|.+ ++++.|++ .|+ +... .|..+ ++...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEE
Confidence 57899999999998766554311 112369999999 78776544 233 1111 22222 2212378999999
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH---HHHH-HHH-HHhccCceeEeecCCCCCCCCceEEEEEecc
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD---ALNK-VRK-FAEGMRWDTKMMDHEDGPLMPEKILIAVKQY 224 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---~~~~-i~~-~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~~ 224 (235)
. ++++. +..+..++|..+.|.|||||+++++-.+. ++-. +.. ..+ .|++-...|+.++ .-+-+++++|.-
T Consensus 202 ~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVIIARKPG 276 (296)
T ss_pred e-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEEEEeec
Confidence 9 88776 34578999999999999999999996321 1111 111 112 7888766666555 567899999965
No 86
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.10 E-value=3e-10 Score=99.01 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=71.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH-HHcCcccc-----------------ccccccCCCCCC-
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI-YERGLIGI-----------------YHDWCEGFSTYP- 141 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~-~~Rgl~~~-----------------~~~~~e~l~~~p- 141 (235)
..+|||+|||.|..+.+|+++| .+|+++|+| ..++.+ .++|+... ++.....++..+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 4699999999999999999986 379999999 777753 45665311 121112232233
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii 181 (235)
.+||+|+-..+|+|++ ...-..++..|.++|||||++++
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 6899999999999985 34567999999999999996444
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=4e-10 Score=106.07 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=77.7
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCcc--ccccccccCC-CCC-CCccceeeeh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLI--GIYHDWCEGF-STY-PRTYDLIHAN 150 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~--~~~~~~~e~l-~~~-p~sFDlV~a~ 150 (235)
.....+||+|||+|.++..++.... ..+++|+|.+ .++..+.+ +|+. ..++..+..+ ..+ +++||.|+++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 3456899999999999999987532 3589999998 77765443 3542 2333333322 223 4999999985
Q ss_pred hhhccCCC---CCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHH-HhccCcee
Q 026623 151 GVFSLYEN---TCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKF-AEGMRWDT 202 (235)
Q Consensus 151 ~vl~h~~~---~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~-~~~~~W~~ 202 (235)
.-.-+... +-....+|.|+.|+|||||.+.+.. ..++...+... .+..++..
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 43322110 0012689999999999999999874 44554444444 33334443
No 88
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.08 E-value=3.5e-10 Score=102.63 Aligned_cols=125 Identities=10% Similarity=0.089 Sum_probs=79.6
Q ss_pred ccccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---Ccc
Q 026623 53 GKSYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---GLI 127 (235)
Q Consensus 53 ~~~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---gl~ 127 (235)
++-|...++. .....+.. +...++. ..+|||+|||+|.++..|.+...-..+++++|+| +||..+.++ ..+
T Consensus 38 peYy~tr~E~--~il~~~~~~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p 113 (301)
T TIGR03438 38 PEYYPTRTEA--AILERHADEIAAATGA--GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP 113 (301)
T ss_pred CccccHHHHH--HHHHHHHHHHHHhhCC--CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC
Confidence 4556555442 33333333 3334443 4689999999999999888752112479999999 999987765 111
Q ss_pred c----cccccc-cCCCCCCC----ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 128 G----IYHDWC-EGFSTYPR----TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 128 ~----~~~~~~-e~l~~~p~----sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+ .++..+ +.++..+. ...++++...++|+. ..+...+|+++.++|+|||.|+|.
T Consensus 114 ~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 114 QLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred CceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 122222 22332222 233555567788774 456779999999999999999986
No 89
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.08 E-value=4.1e-10 Score=103.38 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=67.1
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc-------cc-ccccccCCCCCCCccceeeehh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI-------GI-YHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~-------~~-~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
+..+|||+|||+|.++..|.+.+ .+|+++|+| +|+..+.++.-. .. ..-.+..+...+++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 35699999999999999999875 379999999 999988776310 00 0000122333468999999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii 181 (235)
+|+|+++ .....++..+.+ +.+||.++.
T Consensus 221 vL~H~p~-~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 221 VLIHYPQ-DKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEEecCH-HHHHHHHHHHHh-hcCCEEEEE
Confidence 9999864 234566677765 456666443
No 90
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.07 E-value=1.2e-09 Score=98.15 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=90.2
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccc-cccccCCCCCCCccceeeeh---
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIY-HDWCEGFSTYPRTYDLIHAN--- 150 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~-~~~~e~l~~~p~sFDlV~a~--- 150 (235)
.+|||+|||+|.++..|+.... ...|+++|.+ .++..+.+. |+. ..+ .|+.+.+ .++.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEECCCC
Confidence 5899999999999999987521 2479999999 888876653 332 122 3333322 22589999996
Q ss_pred ----------hhhccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHh-ccCce-eEeecCCC
Q 026623 151 ----------GVFSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAE-GMRWD-TKMMDHED 209 (235)
Q Consensus 151 ----------~vl~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~-~~~W~-~~~~~~~~ 209 (235)
.++.|.|.. ..+..++.+..+.|+|||++++--.......+.++.. ...|. +..+ .|
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~--~D 270 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENG--RD 270 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEe--cC
Confidence 233333210 0245889999999999999999876655556777765 45564 3332 22
Q ss_pred CCCCCceEEEEEec
Q 026623 210 GPLMPEKILIAVKQ 223 (235)
Q Consensus 210 ~~~~~e~~l~~~k~ 223 (235)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 2367899998753
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=1.7e-09 Score=93.66 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=74.7
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc-ccccccccCCCCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI-GIYHDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
...+|||+|||+|.++..++..+. ..++++|.+ .++..+.++ |+. ..++..... ...+++||+|+++--+.
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCC
Confidence 356899999999999998887642 379999999 888765543 331 122211111 11247999999975433
Q ss_pred cCCCC------------------CChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeE
Q 026623 155 LYENT------------------CKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 155 h~~~~------------------~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~ 203 (235)
..... ..+..++.++.|+|||||.+++.... .....+.+.+++-.|.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 21100 01467889999999999999985322 122233444444455443
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=1.2e-09 Score=94.60 Aligned_cols=119 Identities=22% Similarity=0.263 Sum_probs=79.9
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccceeeehhhhc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
..+|||+|||+|.++..++.... ..+++++|.+ .++..+.+. |+. ..++..+.. ++.+++||+|+|+--+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 45899999999999999987521 2479999998 888866543 432 222322211 22248999999964332
Q ss_pred ------cCCCC-----------------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCcee
Q 026623 155 ------LYENT-----------------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDT 202 (235)
Q Consensus 155 ------h~~~~-----------------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~ 202 (235)
++... .....++.++.|+|||||.+++.........+.+++++..+..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 11100 0124678999999999999999876655567777777777754
No 93
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.05 E-value=6.7e-10 Score=80.13 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=68.9
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---cCc---cccccccccCCCC-CCCccceeeehhhhcc
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---RGL---IGIYHDWCEGFST-YPRTYDLIHANGVFSL 155 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---Rgl---~~~~~~~~e~l~~-~p~sFDlV~a~~vl~h 155 (235)
+|||+|||+|.++..+...+ ...++++|.+ +.+..+.+ .+. +..++........ .+.+||+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999999888733 3579999998 66665541 111 2222322233332 3489999999999987
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. ......++..+.+.|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 236789999999999999999986
No 94
>PTZ00146 fibrillarin; Provisional
Probab=99.04 E-value=3.3e-09 Score=96.52 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=66.2
Q ss_pred CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-c----cHHHHHHcCccc-cccccccC--CCCCCCccceeeeh
Q 026623 79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-N----TLGVIYERGLIG-IYHDWCEG--FSTYPRTYDLIHAN 150 (235)
Q Consensus 79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~----~L~~~~~Rgl~~-~~~~~~e~--l~~~p~sFDlV~a~ 150 (235)
-.+..+|||+|||+|.++..|++.-.-.-.|+++|++ . ++..+.+|-.+. ...|.... +.....+||+|+++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3456799999999999999998751111358999998 4 445555553332 33332221 11123789999987
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
... ++ +...++.|++|+|||||.|+|.
T Consensus 210 va~---pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 210 VAQ---PD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCC---cc--hHHHHHHHHHHhccCCCEEEEE
Confidence 642 22 4456778999999999999995
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=7.5e-10 Score=101.49 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=80.7
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccceeeeh
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
+..+..+|||.|||+|+++......+ ..++++|.+ .|+..+... |+. ..++..+..+|+.+++||+|+++
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence 34456789999999999977766543 469999999 888765443 442 23455556677656899999996
Q ss_pred hhhcc---CCC--C-CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCc
Q 026623 151 GVFSL---YEN--T-CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRW 200 (235)
Q Consensus 151 ~vl~h---~~~--~-~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W 200 (235)
--+.. ... . ....++|.|+.|+|||||++++...... .+++++++..|
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 33211 100 0 1247899999999999999988764431 34456777777
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=2.5e-09 Score=90.65 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=73.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--ccccccccc-CCCCCCCccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCE-GFSTYPRTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e-~l~~~p~sFDlV~ 148 (235)
+......+|||+|||+|.++..++.... ...|+++|.+ .++..+.++ |+ +..++..++ .++.....+|.++
T Consensus 36 l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 36 LRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEE
Confidence 4434567999999999999888864311 2479999998 888876543 43 222222222 1222224467765
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhcc
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGM 198 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~ 198 (235)
... ..++..++.++.|+|+|||.+++.... +.+..+.+..+.+
T Consensus 115 ~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 115 IEG-------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred EEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 421 135789999999999999999998643 3344455555544
No 97
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.99 E-value=4.7e-09 Score=94.78 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=79.0
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCCC-Cccceeeehh-
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTYP-RTYDLIHANG- 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~p-~sFDlV~a~~- 151 (235)
..+|||+|||+|.++.+|+.... ...|+++|.+ .++..+.+. |+. ..++..+ +...+ ++||+|+++-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNPP 198 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECCC
Confidence 46899999999999999987521 2479999999 888876654 442 2222221 12223 6899999861
Q ss_pred -----h-------hccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecC
Q 026623 152 -----V-------FSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDH 207 (235)
Q Consensus 152 -----v-------l~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~ 207 (235)
. +.|.+.. .....++.++.++|+|||++++--.... ..++.+.....|.-..+++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1 1121110 0135789999999999999998765433 5677776655544344333
No 98
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.99 E-value=1.9e-09 Score=89.89 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=67.9
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--cc-ccccccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GI-YHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~-~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
...+|||+|||+|.++..++.+.. ...|+.+|.+ .++..+.+. ++. .. .+|+.+.++ +..||+|+|+-=
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 466899999999999999988643 3469999999 888866442 332 12 233333333 599999999765
Q ss_pred hccCCC--CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYEN--TCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~--~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++.-.+ ..-+.+++.+..+.|||||.+++.-
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 542210 0125789999999999999986553
No 99
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.95 E-value=2.4e-09 Score=97.58 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=89.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc
Q 026623 55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI 129 (235)
Q Consensus 55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~ 129 (235)
.|-..+|-=-+.+..+...+ .. +..+|||+|||+|-++.+-+..| ...|+++|+. ..+..+.+. |+-..
T Consensus 139 AFGTG~H~TT~lcl~~l~~~--~~--~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKY--VK--PGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHH--SS--TTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred cccCCCCHHHHHHHHHHHHh--cc--CCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 46666554334454433322 22 35699999999998766666555 3469999997 666665543 33221
Q ss_pred ccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCC
Q 026623 130 YHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 130 ~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~ 208 (235)
+. ...........||+|+||-+.. -+..++.++.+.|+|||++|+|=-. +..+.+.+.++. .|++.....+
T Consensus 213 ~~-v~~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 213 IE-VSLSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp EE-ESCTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE
T ss_pred EE-EEEecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE
Confidence 11 0111122239999999976663 3568888999999999999999422 223455556666 7776544333
Q ss_pred CCCCCCceEEEEEec
Q 026623 209 DGPLMPEKILIAVKQ 223 (235)
Q Consensus 209 ~~~~~~e~~l~~~k~ 223 (235)
+.=.-|+++|+
T Consensus 285 ----~~W~~l~~~Kk 295 (295)
T PF06325_consen 285 ----GEWVALVFKKK 295 (295)
T ss_dssp ----TTEEEEEEEE-
T ss_pred ----CCEEEEEEEeC
Confidence 22345666664
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.3e-08 Score=92.77 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCC--Cccceeeehhhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYP--RTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p--~sFDlV~a~~vl 153 (235)
+.++|||+|||+|-++-+.++.| +..|+++|+- -.++.+++. |+....+.-+-.++..+ +.||+|+||= |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 47899999999999988888776 3469999997 677766664 22211111111112223 5999999965 4
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHHHHHHHhccCceeEeecCC
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~i~~~~~~~~W~~~~~~~~ 208 (235)
.+ -+..+..++.|.|||||++|+|=-. +..+.+...+.+-.|++......
T Consensus 239 A~-----vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 AE-----VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred HH-----HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 21 3568899999999999999999533 23556777787888887755443
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.92 E-value=5.1e-09 Score=89.70 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=67.4
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccc-cCCCCCCCcc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWC-EGFSTYPRTY 144 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~-e~l~~~p~sF 144 (235)
++..+...+..+|||+|||+|.++..|+... ..|+++|.+ +++..+.++ |+ +...+... +.++ ..++|
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~f 145 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPF 145 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCc
Confidence 3334454556799999999999988777653 269999998 777766553 33 22223222 1122 12789
Q ss_pred ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
|+|+++..++++ ..++.+.|+|||.+++.-.
T Consensus 146 D~I~~~~~~~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh---------hHHHHHhcCCCcEEEEEEc
Confidence 999997766433 4567899999999998754
No 102
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.92 E-value=9.7e-09 Score=97.59 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=88.2
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-ccccc-ccccCCCCCCCccceeeehhhhc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYH-DWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~-~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
..+|||+|||+|.++..|+.... ..+|+++|.| .+++.+.+. +. +..++ |+.+......++||+|+||-=..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 35899999999999988875321 3479999999 999877654 32 22222 22221111236899999954210
Q ss_pred -------------cCC-----CCC----ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE--eecCCCC
Q 026623 155 -------------LYE-----NTC----KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK--MMDHEDG 210 (235)
Q Consensus 155 -------------h~~-----~~~----~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~--~~~~~~~ 210 (235)
|.| ... -+..++.+..+.|+|||.+++--..+..+.+++++++..|... ..|.-
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~-- 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA-- 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--
Confidence 000 000 1237778888999999999886555556678888877777643 22222
Q ss_pred CCCCceEEEEEec
Q 026623 211 PLMPEKILIAVKQ 223 (235)
Q Consensus 211 ~~~~e~~l~~~k~ 223 (235)
+.++++++++.
T Consensus 409 --G~dR~v~~~~~ 419 (423)
T PRK14966 409 --GLDRVTLGKYM 419 (423)
T ss_pred --CCcEEEEEEEh
Confidence 67899998753
No 103
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.91 E-value=5.7e-09 Score=93.34 Aligned_cols=91 Identities=24% Similarity=0.454 Sum_probs=74.2
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCCCCCCccceeeehhhhccCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
...++||+|+|-|+.+..|+.. ..+|...+.| .|.....+||... ...+|-+ -+..||+|.|-++| |
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhh----h
Confidence 4678999999999999999864 3468899999 8888888899732 2333332 24789999999999 6
Q ss_pred CCC-hHHHHHHHhhhhcCCcEEEEE
Q 026623 159 TCK-PEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 159 ~~~-~~~~L~Em~RVLRPGG~lii~ 182 (235)
+|+ +..+|.+|++.|+|+|.+++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 666 789999999999999999998
No 104
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.91 E-value=6.7e-10 Score=85.46 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=67.2
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCC--CCCCccceeeehhh
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFS--TYPRTYDLIHANGV 152 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~--~~p~sFDlV~a~~v 152 (235)
.+|||+|||+|.++.++.+.+ ..+++++|+. ..++.+..+ ++ +..++.....+. +.+++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999888765 4689999998 666665543 22 122222222232 23599999999887
Q ss_pred hccCC-----CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYE-----NTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+.... .+.....++.++.|+|||||.+++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 76321 11134688999999999999998753
No 105
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.9e-08 Score=95.67 Aligned_cols=126 Identities=16% Similarity=0.278 Sum_probs=80.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC----CCCCccc
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS----TYPRTYD 145 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~----~~p~sFD 145 (235)
+...+..+|||+|||+|+.+.+|+..-.-...|+++|.+ +++..+.++ |+ +..++...+.++ ..+++||
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 444456799999999999998887641112369999999 888865543 44 223333333343 3347999
Q ss_pred eeeeh------hhhccCCCC------CC-------hHHHHHHHhhhhcCCcEEEEEeC----hHHHHHHHHHHhcc-Cce
Q 026623 146 LIHAN------GVFSLYENT------CK-------PEDILLEMDRILRPEGAVIFRDE----VDALNKVRKFAEGM-RWD 201 (235)
Q Consensus 146 lV~a~------~vl~h~~~~------~~-------~~~~L~Em~RVLRPGG~lii~d~----~~~~~~i~~~~~~~-~W~ 201 (235)
.|++. .++.+-++. .+ ...+|.++.|.|||||.++.++. .+-...++.+++.. .|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99963 344433210 01 25889999999999999998862 12344455665543 455
Q ss_pred e
Q 026623 202 T 202 (235)
Q Consensus 202 ~ 202 (235)
.
T Consensus 408 ~ 408 (434)
T PRK14901 408 L 408 (434)
T ss_pred e
Confidence 3
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=1.3e-08 Score=93.04 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=73.5
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---ccccccc-ccCCCCCCCccceeeehh--
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDW-CEGFSTYPRTYDLIHANG-- 151 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~-~e~l~~~p~sFDlV~a~~-- 151 (235)
.+|||+|||+|.++.+|+.... ...|+++|.+ .++..+.+. |+ +..++.. .+.++ +++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCC
Confidence 5899999999999999986521 2479999999 888876554 43 2223222 22222 36899999861
Q ss_pred -----------hhccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhcc
Q 026623 152 -----------VFSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGM 198 (235)
Q Consensus 152 -----------vl~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~ 198 (235)
.+.|.+.. .....++.++.+.|+|||.+++--... ...+.++....
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 11222210 013588999999999999999965443 23466665543
No 107
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.89 E-value=9.7e-09 Score=89.42 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=67.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~ 161 (235)
...|-|+|||.+.+|..+.+. ..|...|+-.. .. .+.......+|..+++.|++++...|.- .+
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMG----Tn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMG----TN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---S----S-
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhC----CC
Confidence 468999999999999887643 24666666311 11 1222223568877899999998777742 47
Q ss_pred hHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCceeEeecCC
Q 026623 162 PEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~~~~~~~ 208 (235)
+.++|.|..|||||||.++|.+-..- .+..-+.++++..++...|..
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC
Confidence 89999999999999999999985542 344456688888888776544
No 108
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.2e-08 Score=92.30 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=88.1
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cccccccCCCCCCCccceeeehh----
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IYHDWCEGFSTYPRTYDLIHANG---- 151 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~~~~e~l~~~p~sFDlV~a~~---- 151 (235)
+|||+|||+|-.|.+|+.... ..+|+++|+| +.|..|.+. |+.. ...+|.+.++ ++||+|+||=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~---~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR---GKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC---CceeEEEeCCCCCC
Confidence 899999999999999998643 2589999999 888876543 5422 1123333333 6999999841
Q ss_pred ---------hhccCC------CC---CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCC
Q 026623 152 ---------VFSLYE------NT---CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLM 213 (235)
Q Consensus 152 ---------vl~h~~------~~---~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~ 213 (235)
++.|-| .. .....++.+..++|+|||.+++.-.......++++.....+ ...........+
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g 267 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF-FEIVETLKDLFG 267 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC-ceEEEEEecCCC
Confidence 001100 00 01248899999999999999999776666678888777774 221111222235
Q ss_pred CceEEEEEe
Q 026623 214 PEKILIAVK 222 (235)
Q Consensus 214 ~e~~l~~~k 222 (235)
.+++.++++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 677777654
No 109
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.86 E-value=9.6e-09 Score=97.44 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=70.7
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc-c--ccccccCCCC--CCCccce
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG-I--YHDWCEGFST--YPRTYDL 146 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~-~--~~~~~e~l~~--~p~sFDl 146 (235)
+...+..+|||+|||+|+.+..++..-. ...|+++|.+ +++..+.++ |+.. . .......+++ .+++||.
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 4555568999999999999988876421 3479999999 888865443 4421 1 1111111222 2378999
Q ss_pred eeeh------hhhccCCCC------CC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623 147 IHAN------GVFSLYENT------CK-------PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 147 V~a~------~vl~h~~~~------~~-------~~~~L~Em~RVLRPGG~lii~d 183 (235)
|++. .++.+.++- .+ ...+|.++.|+|||||.+++++
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9853 455543320 00 2479999999999999999985
No 110
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=9.1e-09 Score=91.14 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=76.4
Q ss_pred eEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCc------cccccccccCC---CCCCCccceeeehhh
Q 026623 84 NVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEGF---STYPRTYDLIHANGV 152 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~l---~~~p~sFDlV~a~~v 152 (235)
.||.+|||.|+..--|.+. +--...|.+.|.| +.+....++-- -..++|.+.+- |..++++|+|++-+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999987777653 2213568999999 88887665421 23445554432 334599999999999
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
|+.+. ...+..++..+.|+|||||.++++|-
T Consensus 154 LSAi~-pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 154 LSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EeccC-hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99884 45689999999999999999999984
No 111
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.85 E-value=1.5e-08 Score=98.43 Aligned_cols=134 Identities=16% Similarity=0.268 Sum_probs=85.8
Q ss_pred CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccc---ccc-cccccCCCCCCCccceeeehh
Q 026623 82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLI---GIY-HDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~-~~~~e~l~~~p~sFDlV~a~~ 151 (235)
..+|||+|||+|.++..|+.. + ...|+++|.| .++..+.+. |+. ..+ .|+.+.+ .+++||+|+|+-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p--~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP--NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEECC
Confidence 458999999999999888753 3 2479999999 888877664 332 112 2222222 136899999842
Q ss_pred --------------hhccCCC-----C----CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCC
Q 026623 152 --------------VFSLYEN-----T----CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 152 --------------vl~h~~~-----~----~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~ 208 (235)
+..|.+. . ..+..++.++.++|+|||.+++.-....-..+..++.+..|...... .
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~-~ 293 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVY-K 293 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEE-e
Confidence 1112110 0 01246788999999999999987555555677777777677643221 1
Q ss_pred CCCCCCceEEEEE
Q 026623 209 DGPLMPEKILIAV 221 (235)
Q Consensus 209 ~~~~~~e~~l~~~ 221 (235)
|- .+.++++++.
T Consensus 294 D~-~g~~R~v~~~ 305 (506)
T PRK01544 294 DL-QGHSRVILIS 305 (506)
T ss_pred cC-CCCceEEEec
Confidence 11 2567887764
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.85 E-value=3.6e-08 Score=87.84 Aligned_cols=121 Identities=19% Similarity=0.307 Sum_probs=89.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCC-CC-Cccceeeehh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFST-YP-RTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~-~p-~sFDlV~a~~ 151 (235)
..+|||+|||+|..+..|+++..- ..+++++.. .+.+.|.+- ++ +.+++++...+.. .+ .+||+|+||=
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 679999999999999999987211 579999998 555554332 11 3344443333331 22 5799999963
Q ss_pred hh---------------ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623 152 VF---------------SLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 152 vl---------------~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~ 203 (235)
=+ .|+.-.++++++++=..++|||||.+.+.-..+.+.+|-.++++++|...
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 32 12334577899999999999999999999999988899999999999875
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.85 E-value=1.4e-08 Score=90.09 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=83.6
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccccc-cccccCCCC-CCCccceeeehhhh-
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIY-HDWCEGFST-YPRTYDLIHANGVF- 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~-~~~~e~l~~-~p~sFDlV~a~~vl- 153 (235)
..+|||+|||+|.++..|..... ...|+++|.+ .+++.+.+. |. ..+ .|+.+.++. ..+.||+|+++-=+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 35899999999999988875411 2469999999 888876543 21 122 222232321 23679999986321
Q ss_pred -----ccCCC-------C------CC----hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCC
Q 026623 154 -----SLYEN-------T------CK----PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHED 209 (235)
Q Consensus 154 -----~h~~~-------~------~~----~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~ 209 (235)
..++. . .+ +..++....++|||||.+++.-..+....+..++++..|+..+..+++
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 11100 0 01 347788888999999999998766666778888888888877666553
No 114
>PRK04457 spermidine synthase; Provisional
Probab=98.82 E-value=3.4e-08 Score=88.27 Aligned_cols=137 Identities=11% Similarity=0.105 Sum_probs=83.7
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Ccc------cccccccc-CCCCCCCccceeeehh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GLI------GIYHDWCE-GFSTYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl~------~~~~~~~e-~l~~~p~sFDlV~a~~ 151 (235)
..++|||+|||+|.++.++..... ...++.+|+. +++..+.+. ++. ..+++.+. -+...+++||+|+++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 467999999999999998876522 3579999998 888887765 221 12222221 1233457899999853
Q ss_pred hhcc--CCCCCChHHHHHHHhhhhcCCcEEEEEe---ChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623 152 VFSL--YENTCKPEDILLEMDRILRPEGAVIFRD---EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK 222 (235)
Q Consensus 152 vl~h--~~~~~~~~~~L~Em~RVLRPGG~lii~d---~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k 222 (235)
++. .+.......++.++.++|+|||.+++.- .......++.+...+.-.+...... ...+.++++.|
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~~a~~ 216 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAVFAFK 216 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEEEEEC
Confidence 331 1111123699999999999999999852 2222222334433333222222222 12457888876
No 115
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.80 E-value=1.1e-08 Score=88.07 Aligned_cols=127 Identities=15% Similarity=0.242 Sum_probs=73.6
Q ss_pred cccchHHHHHHHHHHH-HHhhhhCCCCCceEeeeccccch----HHHHHhc----CCCceeEEeecCcc-ccHHHHHHcC
Q 026623 56 YQEDSKLWKKHVNAYK-KMNSLIGTRRYRNVMDMNAGLGG----FAAALES----PKSWVMNVVPTTAK-NTLGVIYERG 125 (235)
Q Consensus 56 f~~d~~~W~~~v~~y~-~~l~~l~~~~~r~VLD~GCG~G~----faa~L~~----~~~~~~~V~~~D~s-~~L~~~~~Rg 125 (235)
|=.|...|........ .++.....+..-+|+.+||++|. +|..|.+ ...|-..|.+.|++ ..|+.|.+ |
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-G 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-T
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-C
Confidence 4556666665555433 23322333356799999999994 5555554 23456789999999 88886543 2
Q ss_pred c---------cc---------------------------cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHH
Q 026623 126 L---------IG---------------------------IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEM 169 (235)
Q Consensus 126 l---------~~---------------------------~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em 169 (235)
. .. ..|+.++ .+...+.||+|+|-+||-++ +...-..++.-+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe-CHHHHHHHHHHH
Confidence 1 00 1155555 22244999999999999998 334567999999
Q ss_pred hhhhcCCcEEEEEeCh
Q 026623 170 DRILRPEGAVIFRDEV 185 (235)
Q Consensus 170 ~RVLRPGG~lii~d~~ 185 (235)
++.|+|||+|++....
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999998643
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.79 E-value=1.2e-08 Score=97.10 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=70.7
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCC-CCCCccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFS-TYPRTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~-~~p~sFDlV~ 148 (235)
++..+..+|||+|||+|+.+.+++..-.-...|+++|.+ .++..+.++ |+. ...+.....++ +.+++||.|+
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEE
Confidence 444556799999999999888877631112479999999 888876544 442 23333333454 3358899999
Q ss_pred ehhh---hccCCCCCC----------------hHHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ANGV---FSLYENTCK----------------PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 a~~v---l~h~~~~~~----------------~~~~L~Em~RVLRPGG~lii~d 183 (235)
++-- +..++...+ ..++|.+..+.|||||.++.+.
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6322 211211111 1467999999999999999996
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=2.7e-08 Score=94.42 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc-cccccccccCCC-CC-CCccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL-IGIYHDWCEGFS-TY-PRTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl-~~~~~~~~e~l~-~~-p~sFDlV~ 148 (235)
++..+..+|||+|||+|+++..+.+... ...|+++|.+ .++..+.++ |+ +..+...+..++ .+ +++||.|+
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 4444567999999999999998887531 1479999999 888876544 33 222333333333 23 37899999
Q ss_pred ehh------hhccCC------CCCC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ANG------VFSLYE------NTCK-------PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 a~~------vl~h~~------~~~~-------~~~~L~Em~RVLRPGG~lii~d 183 (235)
++- ++.+-+ +..+ ..++|.+..++|||||.+++++
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 422 222111 1011 1378999999999999999886
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.76 E-value=1.6e-08 Score=88.06 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=73.8
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCccccHHHHHHcCccccc-cccccCCCCCCCccceeeehhhh
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAKNTLGVIYERGLIGIY-HDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s~~L~~~~~Rgl~~~~-~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
.......++|||+|+|+|.++.++..+ | ...++-.|.+..++.+.+..-+... +|..+. +|. +|+++..++|
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYP--NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---LPV-ADVYLLRHVL 168 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHST--TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---CSS-ESEEEEESSG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCC--CCcceeeccHhhhhccccccccccccccHHhh---hcc-ccceeeehhh
Confidence 345566789999999999999999874 4 2468889998777766663222221 222233 446 9999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCC--cEEEEEe
Q 026623 154 SLYENTCKPEDILLEMDRILRPE--GAVIFRD 183 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPG--G~lii~d 183 (235)
|++++ .+...+|+.+.+.|+|| |.++|.|
T Consensus 169 h~~~d-~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWSD-EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS-H-HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcch-HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99854 46789999999999999 9999997
No 119
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=1.6e-08 Score=96.56 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=68.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a 149 (235)
+...+..+|||+|||+|+.+..+++.-.-...|+++|.+ .+++.+.++ |+ +.........++ .+++||+|++
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 444456799999999999887776521012369999999 888865543 54 222332233333 2378999995
Q ss_pred h------hhhccCC------CCCC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623 150 N------GVFSLYE------NTCK-------PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 150 ~------~vl~h~~------~~~~-------~~~~L~Em~RVLRPGG~lii~d 183 (235)
. .++.+-+ ...+ ...+|.++.+.|||||.+++++
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 2222111 0011 1368999999999999999997
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=3.4e-08 Score=91.00 Aligned_cols=101 Identities=16% Similarity=0.016 Sum_probs=66.0
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc--ccccccccCCCCCCCccce
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI--GIYHDWCEGFSTYPRTYDL 146 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~--~~~~~~~e~l~~~p~sFDl 146 (235)
+..+...+..+|||+|||+|.+++.+++...-...|+++|.+ +++..+.++ |+. ..++..+...+.....||+
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~ 152 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDV 152 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccE
Confidence 333444446799999999999999988642111258999999 888766552 431 2223222222223378999
Q ss_pred eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+++..+.+ +...+.++|||||.+++..
T Consensus 153 Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDE---------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchHH---------hHHHHHHhcCCCCEEEEEe
Confidence 998755543 3345678999999998864
No 121
>PRK00811 spermidine synthase; Provisional
Probab=98.74 E-value=1.3e-07 Score=85.42 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc-----cccccccccC-CCCCCCccce
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL-----IGIYHDWCEG-FSTYPRTYDL 146 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl-----~~~~~~~~e~-l~~~p~sFDl 146 (235)
...++|||+|||.|+++..+.+.+. +.+|+.+|+. ++++.+.+. ++ +..+++.+.. +...+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3467999999999999999987632 4579999998 888876653 11 1122222221 2333489999
Q ss_pred eeehhhhccCCCC-CChHHHHHHHhhhhcCCcEEEEEe
Q 026623 147 IHANGVFSLYENT-CKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 147 V~a~~vl~h~~~~-~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|++...-.+.+.. ---..++.++.|+|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9985432221110 002578899999999999999963
No 122
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.73 E-value=3.9e-08 Score=87.71 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=69.6
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCCCccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p~sFDlV~a 149 (235)
+...+..+|||+|||+|+.+..|++.-.....|+++|.+ .+++.+.++ |+ +..++..+..++...+.||.|++
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 344456789999999999988876531111369999999 888765443 43 22334334445434467999986
Q ss_pred hh------hhccCCCC------CC-------hHHHHHHHhhhhcCCcEEEEEe
Q 026623 150 NG------VFSLYENT------CK-------PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 150 ~~------vl~h~~~~------~~-------~~~~L~Em~RVLRPGG~lii~d 183 (235)
+- ++.+-++. .+ ...+|.++.+.|||||+++.+.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 32 22221110 01 1369999999999999999995
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=4.9e-08 Score=93.02 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=69.0
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCC-CCCCccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFS-TYPRTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~-~~p~sFDlV~ 148 (235)
+...+..+|||+|||+|+++..+++.-.-...|+++|.+ +++..+.++ |+ +..++.....++ .++++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEE
Confidence 333446789999999999998887641012479999998 888766543 43 223333333332 2448999999
Q ss_pred ehh------hhccCCC------CCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ANG------VFSLYEN------TCKP-------EDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 a~~------vl~h~~~------~~~~-------~~~L~Em~RVLRPGG~lii~d 183 (235)
++- ++.+-++ ..++ ..+|.++.|+|||||.++.+.
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 742 2222110 0011 368999999999999999775
No 124
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.71 E-value=3.4e-08 Score=99.30 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=79.5
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccc-cCCCCCCCccceeeehh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWC-EGFSTYPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~-e~l~~~p~sFDlV~a~~ 151 (235)
.++|||+|||+|+|+.+++..+. ..|+++|.| .+++.+.+. |+. ..++..+ +-+....++||+|+++-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 57999999999999999998753 369999999 888876553 332 1122211 11211257899999841
Q ss_pred -----------hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEee
Q 026623 152 -----------VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMM 205 (235)
Q Consensus 152 -----------vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~ 205 (235)
++... .+...++....++|+|||.++++.+...+....+.+..-.+.+...
T Consensus 617 P~f~~~~~~~~~~~~~---~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQ---RDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCccchhhhHH---HHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 11111 1346788899999999999999876554444455556666776643
No 125
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.69 E-value=1.6e-08 Score=93.44 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=66.7
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---------------cc-cccccccc------CC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---------------LI-GIYHDWCE------GF 137 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---------------l~-~~~~~~~e------~l 137 (235)
+..+|||||||-||=.......+ +..++++|++ ..++.+.+|- .. ..++..|- .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56899999999888444444444 4579999999 8888877774 11 11222221 12
Q ss_pred CCCCCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 138 STYPRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 138 ~~~p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
+.....||+|-|.+.|||. .+......+|.-+.+.|||||+||.+..-
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 2122599999999999974 22233557999999999999999999643
No 126
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=1.6e-07 Score=87.99 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=85.5
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc--------C-c----cccccccccC-CCCCCCcc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER--------G-L----IGIYHDWCEG-FSTYPRTY 144 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R--------g-l----~~~~~~~~e~-l~~~p~sF 144 (235)
...++||++|||+|..++.+.+.+. +.+|+.+|++ ++++++.+. + + +..+++.+.. +...++.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3467999999999999888887642 4689999999 889988751 1 1 1111221111 23334789
Q ss_pred ceeeehhhhc--cCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-----HHHHHHHHHhccCceeEeecCCCCCC-CCce
Q 026623 145 DLIHANGVFS--LYENTCKPEDILLEMDRILRPEGAVIFRDEVD-----ALNKVRKFAEGMRWDTKMMDHEDGPL-MPEK 216 (235)
Q Consensus 145 DlV~a~~vl~--h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-----~~~~i~~~~~~~~W~~~~~~~~~~~~-~~e~ 216 (235)
|+|++...-. .....---..++..+.|.|+|||.+++..... ....+.+.+++.-..+..+..---+. ..=.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~Wg 307 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWG 307 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceE
Confidence 9999863210 00000011578999999999999999985432 22223444444444444332211111 1245
Q ss_pred EEEEEeccc
Q 026623 217 ILIAVKQYW 225 (235)
Q Consensus 217 ~l~~~k~~w 225 (235)
+.+|.|.-.
T Consensus 308 F~~as~~~~ 316 (374)
T PRK01581 308 FHIAANSAY 316 (374)
T ss_pred EEEEeCCcc
Confidence 778877544
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.66 E-value=4.8e-08 Score=81.04 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=69.0
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceee
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIH 148 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~ 148 (235)
+..++.....+|||+|||+|.++..|+++. ..++++|.+ .+++.+.++- -+..++..+..+++.+.+||.|+
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEE
Confidence 334444456799999999999999999873 469999999 8888776652 13345555555664446799999
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
++--++ .. ...+..++.+.. +.++|.+++..
T Consensus 83 ~n~Py~-~~-~~~i~~~l~~~~--~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYN-IS-TPILFKLLEEPP--AFRDAVLMVQK 113 (169)
T ss_pred ECCCcc-cH-HHHHHHHHhcCC--CcceEEEEEEH
Confidence 875553 21 123344444322 56889998884
No 128
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.65 E-value=3.3e-07 Score=81.96 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--c--------cccccccc-cCCCCCCCccce
Q 026623 79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--L--------IGIYHDWC-EGFSTYPRTYDL 146 (235)
Q Consensus 79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l--------~~~~~~~~-e~l~~~p~sFDl 146 (235)
....++||++|||+|+++..+.+.+. ..+++.+|.+ +++..+.+.- + +...+..+ +-+...+++||+
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 33456999999999999988877641 3578999998 7777665531 0 11111111 111223589999
Q ss_pred eeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEe
Q 026623 147 IHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 147 V~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d 183 (235)
|++.......+ ... -..++..+.|+|+|||.+++.-
T Consensus 149 Ii~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99865432111 112 3588899999999999999874
No 129
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.64 E-value=1.4e-07 Score=78.72 Aligned_cols=143 Identities=14% Similarity=0.091 Sum_probs=77.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccc------cccccCCCCCCCccceeeeh
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIY------HDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~------~~~~e~l~~~p~sFDlV~a~ 150 (235)
+..+...+|||+||++|||+..+.++......|+++|...+-..-....+.+.. ....+.++...+.||+|+|.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 344456899999999999999999986445689999997441110000111111 11111122112799999998
Q ss_pred hhhccCC--CCC------ChHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCCCCCCCCceE
Q 026623 151 GVFSLYE--NTC------KPEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKI 217 (235)
Q Consensus 151 ~vl~h~~--~~~------~~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~ 217 (235)
....--. +.. -....|.=+...|||||.+|+-- ..+++..++...+.+++. .+.. ..+...|.+
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E~Y 175 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSEEY 175 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccEEE
Confidence 7443110 000 11244444557799999998863 234555566655554432 2211 234468999
Q ss_pred EEEEe
Q 026623 218 LIAVK 222 (235)
Q Consensus 218 l~~~k 222 (235)
|||++
T Consensus 176 lv~~~ 180 (181)
T PF01728_consen 176 LVCRG 180 (181)
T ss_dssp EESEE
T ss_pred EEEcC
Confidence 99975
No 130
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.63 E-value=4.3e-07 Score=81.59 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=73.9
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~ 161 (235)
...|-|+|||-+.+|..-. ..+..+++++++. |- +.. ....+|..++|.|++++...|. ..+
T Consensus 181 ~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~~~---------~V---~~c-Dm~~vPl~d~svDvaV~CLSLM----gtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSER-HKVHSFDLVAVNE---------RV---IAC-DMRNVPLEDESVDVAVFCLSLM----GTN 242 (325)
T ss_pred ceEEEecccchhhhhhccc-cceeeeeeecCCC---------ce---eec-cccCCcCccCcccEEEeeHhhh----ccc
Confidence 4579999999999976222 2333333333322 21 111 1244787889999998866663 248
Q ss_pred hHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCceeEeecCC
Q 026623 162 PEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~~~~~~~ 208 (235)
+.+++.|.+|||||||.++|.+-..- .....+-+.+|.+++...|..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 89999999999999999999985432 344556678888887765544
No 131
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.9e-07 Score=85.09 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=76.8
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cc-cccccCCCCCCCccc
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IY-HDWCEGFSTYPRTYD 145 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~-~~~~e~l~~~p~sFD 145 (235)
++.+......+|||+|||+|-++..|++... ...++-+|.+ ..++.+.+- ++-+ .+ .+.++.. .+.||
T Consensus 151 l~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---~~kfd 226 (300)
T COG2813 151 LETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV---EGKFD 226 (300)
T ss_pred HHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc---ccccc
Confidence 3444433344999999999999999998743 4679999998 777755432 3332 12 1112211 25999
Q ss_pred eeeehhhhccCCCC--CChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHH
Q 026623 146 LIHANGVFSLYENT--CKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFA 195 (235)
Q Consensus 146 lV~a~~vl~h~~~~--~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~ 195 (235)
+|+||==||-=..- .--.+++.+..+.|++||-++|--+. ++-..++++.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 99999888732110 01238899999999999999888652 3344444443
No 132
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=81.46 Aligned_cols=110 Identities=13% Similarity=0.185 Sum_probs=71.4
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCccc---cc-cccccCCCCCCCccceeeehhhh
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLIG---IY-HDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~---~~-~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
.+|||+|||.|.+...|++.+. .-.++++|.| ..+.. |.++|+.. .. .|...+ .+.++.||+|+=-..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCce
Confidence 4999999999999999998763 2349999999 66653 44456643 11 121121 3455889998854444
Q ss_pred ccC---CCC--CChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHH
Q 026623 154 SLY---ENT--CKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKF 194 (235)
Q Consensus 154 ~h~---~~~--~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~ 194 (235)
..+ ++. ..+...+--+.++|+|||+|+|+-..-..+++.+.
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~ 192 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEE 192 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHH
Confidence 322 111 12356788899999999999999644333333333
No 133
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.57 E-value=3.5e-07 Score=67.17 Aligned_cols=94 Identities=22% Similarity=0.326 Sum_probs=62.0
Q ss_pred EeeeccccchH--HHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccccccC--CCCCC-Cccceeeehhh
Q 026623 85 VMDMNAGLGGF--AAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEG--FSTYP-RTYDLIHANGV 152 (235)
Q Consensus 85 VLD~GCG~G~f--aa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~--l~~~p-~sFDlV~a~~v 152 (235)
+||+|||+|.. ...+...+ ..++++|.+ .++.....+.. +......... +++.+ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG---AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC---ceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999984 44444332 346778888 77776433321 1222222222 55445 489999 5555
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
..|... ....+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 544322 789999999999999999999754
No 134
>PHA03411 putative methyltransferase; Provisional
Probab=98.56 E-value=1.6e-07 Score=84.89 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=69.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCCC-
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN- 158 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~- 158 (235)
..+|||+|||+|.++..+..+.. ..+|+++|.+ .+++.+.++-. +..++.....+. .+++||+|+++--|.|++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence 45899999999999888866421 2479999999 89988776521 122222222222 2478999999988887531
Q ss_pred -CCC---------------hHHHHHHHhhhhcCCcEEEEE
Q 026623 159 -TCK---------------PEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 159 -~~~---------------~~~~L~Em~RVLRPGG~lii~ 182 (235)
+.+ +.+.+....++|+|+|.+++.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 111 357889999999999988776
No 135
>PRK03612 spermidine synthase; Provisional
Probab=98.55 E-value=3e-07 Score=89.64 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=79.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Cc------------cccccccccC-CCCCCCccc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GL------------IGIYHDWCEG-FSTYPRTYD 145 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl------------~~~~~~~~e~-l~~~p~sFD 145 (235)
+.++|||+|||+|..+..+.+++. +..|+.+|++ ++++.+++. .+ +..++.++.. +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467999999999999999887642 3579999998 888887762 11 1112222222 222458999
Q ss_pred eeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeC-----hHHHHHHHHHHhccCceeEe
Q 026623 146 LIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDE-----VDALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~-----~~~~~~i~~~~~~~~W~~~~ 204 (235)
+|+++......+.... -+++++++.|.|||||.+++... .+....+.+.+++....+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 9999743321110000 14688999999999999999642 33344566666666554443
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=3e-07 Score=78.90 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=74.0
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCccc--cccccccC-CC-C-CCCccceeeehh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLIG--IYHDWCEG-FS-T-YPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~--~~~~~~e~-l~-~-~p~sFDlV~a~~ 151 (235)
...+||+|||.|.|..+++.... ..|++|+|.. ..+.. +.++++.. .++..+.. |. + .++++|-|+.++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 34899999999999999987532 3689999998 65554 33445533 23322222 21 2 349999998632
Q ss_pred hhc-----cCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhcc--CceeE
Q 026623 152 VFS-----LYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGM--RWDTK 203 (235)
Q Consensus 152 vl~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~--~W~~~ 203 (235)
==- |.+.+=--..+|.++.|+|+|||.+.+.. ..++.+.+.+.+... .++..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 221 22111112599999999999999999875 455666666665553 44433
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.49 E-value=1.2e-07 Score=82.32 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=63.2
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCCCC-
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFSTYP- 141 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~~p- 141 (235)
+.+++..+.-.+..+|||+|||+|.+++-|+..-.-+..|+.+|.. ...+.+.++ |+ +...+..+.. ...+
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~-g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE-GWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG-TTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh-ccccC
Confidence 4445665666667899999999999998887631112358888887 445444443 33 2233433321 2123
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
..||.|+++.....++ . ++.+-|||||.+++--.
T Consensus 140 apfD~I~v~~a~~~ip------~---~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIP------E---ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--------H---HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHH------H---HHHHhcCCCcEEEEEEc
Confidence 7899999987775332 3 34456999999998643
No 138
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.48 E-value=2.7e-07 Score=81.26 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=71.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Cc-----------------cccccccccCCCCC-
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-GL-----------------IGIYHDWCEGFSTY- 140 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl-----------------~~~~~~~~e~l~~~- 140 (235)
...+||+.|||.|.=+..|+++| .+|+++|+| ..+..++++ ++ +..+..+.-.++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35699999999999999999987 369999999 667665442 21 11222211123321
Q ss_pred -C-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 141 -P-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 141 -p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. +.||+|.=...|.+++. ..-.+...-|.++|||||.+++-
T Consensus 120 ~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 2 68999999999999853 34579999999999999998776
No 139
>PLN02366 spermidine synthase
Probab=98.47 E-value=4.6e-07 Score=83.08 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=66.0
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCC-CCccce
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTY-PRTYDL 146 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~-p~sFDl 146 (235)
.+.++|||+|||.|+++.++.+.+ .+..|+.+|+. .+++.+.+. ++ +..+++.+.. +... ++.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 346899999999999999998874 24578888887 677766553 11 1122222111 1212 478999
Q ss_pred eeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEE
Q 026623 147 IHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 147 V~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~ 182 (235)
|++...-.+.+. .. -..++..+.|.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~-~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPA-QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCch-hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998543322110 01 147899999999999999875
No 140
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=9.9e-07 Score=77.74 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=68.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------cccc-ccccccCCCCCC-Cccceeeeh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------LIGI-YHDWCEGFSTYP-RTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------l~~~-~~~~~e~l~~~p-~sFDlV~a~ 150 (235)
...+|||+|||||+|+..|++.+ +..|+++|.+ +|+....... .... ...|.+ ++ .+ ..||+++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-PDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-CCceeeeEEEee
Confidence 46789999999999999999886 3579999999 6887532221 1111 112222 22 23 467776653
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE-------------------eC---hHHHHHHHHHHhccCceeE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR-------------------DE---VDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------d~---~~~~~~i~~~~~~~~W~~~ 203 (235)
. ..+|..|.+.|+| |.+++. |. ...++++...+.+..|.+.
T Consensus 151 ~-----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 151 L-----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred h-----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2 3457777888888 766655 21 1235666666777888765
No 141
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.2e-07 Score=84.04 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc---Ccccc-ccccccCCCCCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER---GLIGI-YHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R---gl~~~-~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
....++|+|||.|..+..|...+ +-.++-.|.| .|++-+.+- ++... ....-|.|+|.+++||+|+++..+|.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 35689999999999999999887 4578899999 999876554 33221 12333678888899999999999987
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. ++...+..++-+|||.|.||-+
T Consensus 150 ~N---dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 150 TN---DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hc---cCchHHHHHHHhcCCCccchhH
Confidence 63 6789999999999999999987
No 142
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=1.3e-07 Score=85.45 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=71.2
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC 160 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~ 160 (235)
...+||+|||.|.+. ..++ -..+.+.|.+ ..+..+...|-.......+-.+|+-+.+||.+....|+||+..++
T Consensus 46 gsv~~d~gCGngky~---~~~p--~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYL---GVNP--LCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred cceeeecccCCcccC---cCCC--cceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 567999999999752 2223 1247889998 444444444432344445566787779999999999999998777
Q ss_pred ChHHHHHHHhhhhcCCcEEEEE
Q 026623 161 KPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~ 182 (235)
--..+|+|+-|+|||||...|-
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEE
Confidence 7789999999999999995554
No 143
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.44 E-value=1.1e-06 Score=80.05 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=79.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccch----HHHHHhcC-C--CceeEEeecCcc-ccHHHHHHc--
Q 026623 55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGG----FAAALESP-K--SWVMNVVPTTAK-NTLGVIYER-- 124 (235)
Q Consensus 55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~----faa~L~~~-~--~~~~~V~~~D~s-~~L~~~~~R-- 124 (235)
.|=.|...|....... . .....-+|...||.||. +|..|.+. + .+...|++.|++ ..|+.|.+-
T Consensus 95 ~FFRd~~~f~~L~~~~---~---~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 95 AFFREAHHFPILAEHA---R---RRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred CccCCcHHHHHHHHHH---H---hcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 4556666655444321 1 11123699999999994 55555542 1 123579999999 888865331
Q ss_pred ------Ccc----------------c--------------cccccccCCCCC-CCccceeeehhhhccCCCCCChHHHHH
Q 026623 125 ------GLI----------------G--------------IYHDWCEGFSTY-PRTYDLIHANGVFSLYENTCKPEDILL 167 (235)
Q Consensus 125 ------gl~----------------~--------------~~~~~~e~l~~~-p~sFDlV~a~~vl~h~~~~~~~~~~L~ 167 (235)
++. + ..|+..+ .++. ++.||+|+|.+||.|+. ......++.
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~ 246 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA-KQWAVPGPFDAIFCRNVMIYFD-KTTQERILR 246 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC-CCCccCCCcceeeHhhHHhcCC-HHHHHHHHH
Confidence 110 0 0133333 1222 38999999999999983 346789999
Q ss_pred HHhhhhcCCcEEEEEeC
Q 026623 168 EMDRILRPEGAVIFRDE 184 (235)
Q Consensus 168 Em~RVLRPGG~lii~d~ 184 (235)
.+.+.|+|||+|++...
T Consensus 247 ~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 247 RFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHhCCCcEEEEeCc
Confidence 99999999999998864
No 144
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.42 E-value=3.9e-07 Score=85.38 Aligned_cols=97 Identities=21% Similarity=0.190 Sum_probs=70.9
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCc---cccccccccCCCCCCCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGL---IGIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
...++|+|||+|+...++..-. ..++++++.+ ..+....+ .++ -..+..|+-.-||.+++||.+-+..+.
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 3489999999999888887643 2457788776 32222111 111 011344455567778999999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.|.+ +.+.++.|++|||+|||+++.-+
T Consensus 189 ~~~~---~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 189 CHAP---DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ccCC---cHHHHHHHHhcccCCCceEEeHH
Confidence 9986 78999999999999999999875
No 145
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.40 E-value=5.5e-06 Score=71.00 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=83.5
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---c-Cccc--cccccc-cCCCCCCCccc
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---R-GLIG--IYHDWC-EGFSTYPRTYD 145 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---R-gl~~--~~~~~~-e~l~~~p~sFD 145 (235)
+..|...+...++|+|||+|+.+..+...+. ...|+++|.. +++..+.+ | |+.+ .+..++ +.|+-.+ +||
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence 4456667778999999999999888873221 4579999987 66664332 2 4321 222221 2344334 899
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCc-eeE
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRW-DTK 203 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W-~~~ 203 (235)
.|+.... -.++.+|.-...-|||||.+++.- +.+....+-...+.+.+ ++.
T Consensus 105 aiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 105 AIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred EEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 9998655 257899999999999999999995 34555566666777777 544
No 146
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.40 E-value=4.8e-06 Score=79.45 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=85.4
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--ccccccccc-CC---C
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCE-GF---S 138 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e-~l---~ 138 (235)
|..+++.+......+|||+|||+|.++..|+... ..|+++|.+ +++..+.+. |+ +..+....+ .+ +
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 3444444544445799999999999999998764 479999999 899876653 33 122222221 12 2
Q ss_pred CCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeE---eecCCCCCCCC
Q 026623 139 TYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTK---MMDHEDGPLMP 214 (235)
Q Consensus 139 ~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~---~~~~~~~~~~~ 214 (235)
+.+++||+|+++ - .+..+..++..+.+ |+|++.++++=++.. ..-+..+.+ -.|++. .+|.=....+-
T Consensus 363 ~~~~~fD~Vi~d-----P-Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~Hv 434 (443)
T PRK13168 363 WALGGFDKVLLD-----P-PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHV 434 (443)
T ss_pred hhcCCCCEEEEC-----c-CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcE
Confidence 234789999862 1 22334566665555 699999999966543 334444433 236654 22322233355
Q ss_pred ceEEEEEe
Q 026623 215 EKILIAVK 222 (235)
Q Consensus 215 e~~l~~~k 222 (235)
|.+.+.+|
T Consensus 435 E~v~lL~r 442 (443)
T PRK13168 435 ESMALFER 442 (443)
T ss_pred EEEEEEEe
Confidence 66655443
No 147
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.40 E-value=9.6e-07 Score=83.55 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=71.1
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc----ccccccc-cCCCC---CCCccceee
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI----GIYHDWC-EGFST---YPRTYDLIH 148 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~----~~~~~~~-e~l~~---~p~sFDlV~ 148 (235)
..+|||+|||+|+|+.+.+..+ ...|+++|.+ .+++.+.+. |+. ..++..+ +.+.. ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999987655444 3479999999 888865542 432 1222211 11111 136899999
Q ss_pred ehhhhccCCCC-------CChHHHHHHHhhhhcCCcEEEEEeCh------HHHHHHHHHHhccCceeE
Q 026623 149 ANGVFSLYENT-------CKPEDILLEMDRILRPEGAVIFRDEV------DALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 149 a~~vl~h~~~~-------~~~~~~L~Em~RVLRPGG~lii~d~~------~~~~~i~~~~~~~~W~~~ 203 (235)
++-=.- .++. .+...++.-..++|+|||.+++..+. ++.+.+.+-+..-.-++.
T Consensus 299 lDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 299 MDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred ECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 852110 0011 13445666788999999999986532 234444444444444444
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.36 E-value=3.1e-06 Score=77.28 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=81.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCCCC-CCCccceeeehhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGFST-YPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l~~-~p~sFDlV~a~~v 152 (235)
...+|||+|||+|.|+..|+..+ ..|+++|.+ .+++.+.+. |+ +..+....+.+.. .++.||+|+++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 35789999999999999999864 479999999 888876543 44 2223322232221 23679999975
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEe---ecCCCCCCCCceEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKM---MDHEDGPLMPEKILIAVK 222 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~---~~~~~~~~~~e~~l~~~k 222 (235)
|.+..+...+.++..-++|++.++++-++.. ...++.+ -.|++.. .|-=....+-|.+..-++
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 3344444555566666899999999966653 3344444 2466542 222223335566655543
No 149
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.34 E-value=5.5e-07 Score=78.81 Aligned_cols=102 Identities=21% Similarity=0.305 Sum_probs=66.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc-----Ccccc-ccccccCCCCCCCccceeeehhhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER-----GLIGI-YHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-----gl~~~-~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
...++||.|||-|..+..|+-.- .-.|.-++.. ..++.+.+. +-++. ++.--|.+.+.++.||+|.+..++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999999886542 2245556665 667766632 22222 211113333234799999999999
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
.|+.+ .++..+|.-+..-|+|+|.+++-|+.
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 99965 68999999999999999999999743
No 150
>PHA03412 putative methyltransferase; Provisional
Probab=98.29 E-value=2.1e-06 Score=76.28 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred CceEeeeccccchHHHHHhcC-C-CceeEEeecCcc-ccHHHHHHcCc-cccccccccCCCCCCCccceeeehhhhccCC
Q 026623 82 YRNVMDMNAGLGGFAAALESP-K-SWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~-~-~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
..+|||+|||+|.++.+++.+ . ....+|+++|+. .++..+.+.-. +..++......+ .+.+||+|++|==|.-..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~-~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTE-FDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc-ccCCccEEEECCCCCCcc
Confidence 459999999999999888753 1 013479999999 88887764421 122222222222 357999999965443111
Q ss_pred --C------CCC-hHHHHHHHhhhhcCCcE
Q 026623 158 --N------TCK-PEDILLEMDRILRPEGA 178 (235)
Q Consensus 158 --~------~~~-~~~~L~Em~RVLRPGG~ 178 (235)
+ ... ...++....|.|+||+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 112 34688888998888886
No 151
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.29 E-value=2.8e-06 Score=73.82 Aligned_cols=133 Identities=19% Similarity=0.301 Sum_probs=86.9
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCcccc----ccccccC-------CCCCCCcccee
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLIGI----YHDWCEG-------FSTYPRTYDLI 147 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~~----~~~~~e~-------l~~~p~sFDlV 147 (235)
+||.||||||.-+.+++..-. ...-.|.|.. +.+.- +.+.|+... ..|.++. -+.++++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 699999999988888876421 1345688887 33332 334455221 2222221 12345899999
Q ss_pred eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-----------------------ChH----HHHHHHHHHhccCc
Q 026623 148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-----------------------EVD----ALNKVRKFAEGMRW 200 (235)
Q Consensus 148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-----------------------~~~----~~~~i~~~~~~~~W 200 (235)
+|.+++|-. .+...+.++.+..|+|+|||.|++-- +.+ -++.+..++.+-..
T Consensus 107 ~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 999999765 45567899999999999999999871 100 14557777777666
Q ss_pred eeE-eecCCCCCCCCceEEEEEe
Q 026623 201 DTK-MMDHEDGPLMPEKILIAVK 222 (235)
Q Consensus 201 ~~~-~~~~~~~~~~~e~~l~~~k 222 (235)
+.. .++ -| -.+++||.+|
T Consensus 186 ~l~~~~~---MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDID---MP-ANNLLLVFRK 204 (204)
T ss_pred ccCcccc---cC-CCCeEEEEeC
Confidence 643 222 22 4578888876
No 152
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.28 E-value=9.4e-07 Score=77.72 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=62.8
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---cccccccc-cCCCC----C-CCcc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWC-EGFST----Y-PRTY 144 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~-e~l~~----~-p~sF 144 (235)
.+.++|||+|||+|.-+..|+.. +. ...|+.+|.+ +++..+.+. |+ +..+++.+ +.|+. . ..+|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34679999999999866555542 21 2369999998 777765543 43 22222221 22221 1 3689
Q ss_pred ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
|+|++..- ......++.++.|.|||||.+++.
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987422 124568899999999999998875
No 153
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.27 E-value=4.2e-06 Score=79.31 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=75.8
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CC---CCC
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FS---TYP 141 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~---~~p 141 (235)
++..+......+|||+|||+|.++..|++.. ..|+++|.+ ++++.+.+. |+ +..++..++. ++ +.+
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence 3434443445689999999999999998753 369999999 888876553 33 2233333332 22 123
Q ss_pred CccceeeehhhhccCCCCCC-hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623 142 RTYDLIHANGVFSLYENTCK-PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~-~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~ 203 (235)
++||+|+.+ - .+.. ...++.++.+ |+|+|.++++-++..+.+--+.+..-.|++.
T Consensus 361 ~~~D~vi~d-----P-Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 361 QIPDVLLLD-----P-PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred CCCCEEEEC-----c-CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 689999862 1 1222 3566776665 8999999998766654333333334446554
No 154
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=5e-06 Score=75.03 Aligned_cols=128 Identities=17% Similarity=0.272 Sum_probs=84.4
Q ss_pred ccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccc----hHHHHHhcCC----CceeEEeecCcc-ccHHHHHH-
Q 026623 55 SYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLG----GFAAALESPK----SWVMNVVPTTAK-NTLGVIYE- 123 (235)
Q Consensus 55 ~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G----~faa~L~~~~----~~~~~V~~~D~s-~~L~~~~~- 123 (235)
.|=.+.+.|....++-.. ++..... +.-+|.-+||+|| ++|..|.+.. .+...|.+.|++ ..|+.|..
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 355666666655544222 1111112 3669999999999 3555555543 246789999998 77775422
Q ss_pred --------cCcc-------------c--------------cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHH
Q 026623 124 --------RGLI-------------G--------------IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLE 168 (235)
Q Consensus 124 --------Rgl~-------------~--------------~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~E 168 (235)
+++. + ..|+..+.-+ +++-||+|+|-+|+-++ +...-.+++..
T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF-d~~~q~~il~~ 226 (268)
T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF-DEETQERILRR 226 (268)
T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee-CHHHHHHHHHH
Confidence 2221 0 0143333223 66889999999999988 44455799999
Q ss_pred HhhhhcCCcEEEEEeCh
Q 026623 169 MDRILRPEGAVIFRDEV 185 (235)
Q Consensus 169 m~RVLRPGG~lii~d~~ 185 (235)
++..|+|||++++-.+.
T Consensus 227 f~~~L~~gG~LflG~sE 243 (268)
T COG1352 227 FADSLKPGGLLFLGHSE 243 (268)
T ss_pred HHHHhCCCCEEEEccCc
Confidence 99999999999998654
No 155
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.24 E-value=7.4e-06 Score=69.98 Aligned_cols=133 Identities=20% Similarity=0.369 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc-c---cHHH-HHHcCcc--cc
Q 026623 59 DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK-N---TLGV-IYERGLI--GI 129 (235)
Q Consensus 59 d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~---~L~~-~~~Rgl~--~~ 129 (235)
..+.|.+++.+-...++.+..... +++|+|+|.| |+..++.... .+++-+|.. . .|.. +.+-||. ..
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~---~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPD---LQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TT---SEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred HHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCC---CcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 357777777654545555555433 7999999999 5555555432 357788875 3 3332 3334663 35
Q ss_pred ccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChHH---HHHHHHHHhccCceeE
Q 026623 130 YHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVDA---LNKVRKFAEGMRWDTK 203 (235)
Q Consensus 130 ~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~---~~~i~~~~~~~~W~~~ 203 (235)
++...|. +.++..||+|+| +....+..++.-+.+.|+|||.+++--.... +...++..+.+.++..
T Consensus 103 ~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 6766776 446699999998 3345788999999999999999999975543 4444555666666654
No 156
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.23 E-value=3.1e-06 Score=78.13 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---------c---cccccccc------cCCCCC
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---------L---IGIYHDWC------EGFSTY 140 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---------l---~~~~~~~~------e~l~~~ 140 (235)
.+++.+||+|||-||=+...-+.+ .-.++++|+. -.++.+..|- . ...+...| +.+++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 357789999999998544443333 2358888887 5555554441 1 11122222 234433
Q ss_pred CCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEEeCh-H-HHHHHHH
Q 026623 141 PRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFRDEV-D-ALNKVRK 193 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~-~~~~i~~ 193 (235)
+..||+|-|.+.||+- ..-.....+|+-+.+.|||||+||-+-+. + ++.+++.
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 4559999999999862 22234558899999999999999998543 3 3444443
No 157
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.9e-05 Score=70.58 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=78.8
Q ss_pred hCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Ccccc----ccccccCCCCCCCccce
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIGI----YHDWCEGFSTYPRTYDL 146 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~~----~~~~~e~l~~~p~sFDl 146 (235)
++-.++.+|||.|.|+|.++++|+.. +. ...|+..+.- +.++.|.+. |+... .-|-++.. .++.||.
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~-~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDa 166 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGP-EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDA 166 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCC-CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCE
Confidence 45566889999999999999999952 22 3478888887 777766543 44221 12223322 3469999
Q ss_pred eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCc
Q 026623 147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRW 200 (235)
Q Consensus 147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W 200 (235)
|+. |-.++-.+|.-++.+|+|||.+++-- +.+.+.++-..++..+|
T Consensus 167 v~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 167 VFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred EEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 987 55688899999999999999998875 34544454444555566
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.17 E-value=5e-06 Score=69.81 Aligned_cols=121 Identities=25% Similarity=0.307 Sum_probs=64.2
Q ss_pred chHHHHHHHH--HHHHHhh----hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHH---Hc-C--c
Q 026623 59 DSKLWKKHVN--AYKKMNS----LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIY---ER-G--L 126 (235)
Q Consensus 59 d~~~W~~~v~--~y~~~l~----~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~---~R-g--l 126 (235)
....|..... .|..... ........+||++|||+|-.+..++... ....|+..|.++.++.+. ++ + .
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~ 95 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNEVLELLRRNIELNGSLL 95 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S-HHHHHHHHHHTT----
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccchhhHHHHHHHHhccccc
Confidence 3566765554 3443210 1223456799999999995554554441 135688888876444322 21 1 1
Q ss_pred ----cccccccccCCC--C-CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 127 ----IGIYHDWCEGFS--T-YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 127 ----~~~~~~~~e~l~--~-~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.....+|.+.++ . .++.||+|+++.++..- ...+.++.=+.++|+|+|.+++..
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 113467776441 1 23789999999999743 367888889999999999988875
No 159
>PLN02672 methionine S-methyltransferase
Probab=98.15 E-value=8.8e-06 Score=85.25 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=75.7
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc------------------cccc-cccccCC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL------------------IGIY-HDWCEGF 137 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl------------------~~~~-~~~~e~l 137 (235)
..+|||+|||+|.++..|+.... ...|+++|++ +++..+.+. ++ +..+ .|+.+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35899999999999999987521 2379999999 888876332 11 1112 2333332
Q ss_pred CCCCCccceeeehh---------hhc-----cCC--------CCCCh-------------HHHHHHHhhhhcCCcEEEEE
Q 026623 138 STYPRTYDLIHANG---------VFS-----LYE--------NTCKP-------------EDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 138 ~~~p~sFDlV~a~~---------vl~-----h~~--------~~~~~-------------~~~L~Em~RVLRPGG~lii~ 182 (235)
......||+|++|= .++ |-| +.+.+ ..++.+..++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21112699999851 111 111 11222 57899999999999999988
Q ss_pred eChHHHHHHH-HHHhccCcee
Q 026623 183 DEVDALNKVR-KFAEGMRWDT 202 (235)
Q Consensus 183 d~~~~~~~i~-~~~~~~~W~~ 202 (235)
-....-+.+. ++.+.-.|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6665556666 4666544543
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.13 E-value=5.2e-06 Score=72.57 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH-cCcccc------c--------cccccC-CCC-
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE-RGLIGI------Y--------HDWCEG-FST- 139 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~-Rgl~~~------~--------~~~~e~-l~~- 139 (235)
......+||+-|||.|.-+..|+++| .+|+++|+| ..++.+++ +++... . .-+|.. |..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 34446799999999999999999987 489999999 67776544 443111 0 001111 221
Q ss_pred -CC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcE--EEEEe-------ChHH---HHHHHHHHhccCceeEe
Q 026623 140 -YP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGA--VIFRD-------EVDA---LNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 140 -~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~--lii~d-------~~~~---~~~i~~~~~~~~W~~~~ 204 (235)
.. ++||+|.=...|.-++ ...-.+...-|.++|||||. ++..+ .+++ .++|+.++. -.|++..
T Consensus 111 ~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred hhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 22 5799999777777774 34567999999999999999 33332 1221 456666666 7777653
No 161
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.10 E-value=9.9e-06 Score=71.43 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=72.6
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCc--ccccccccc-CCCC-CC-Cccceeeehhh
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGL--IGIYHDWCE-GFST-YP-RTYDLIHANGV 152 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl--~~~~~~~~e-~l~~-~p-~sFDlV~a~~v 152 (235)
..+|+||||.|.|...++.+.. ..|+.|++.. ..+. .+.+.|+ +..+...+. -|.. .+ ++.|-|+.++=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 4799999999999999998643 3488888886 4333 4556676 223333222 2343 34 59999986332
Q ss_pred hc-----cCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-HHHHH-HHHHHh
Q 026623 153 FS-----LYENTCKPEDILLEMDRILRPEGAVIFRDEV-DALNK-VRKFAE 196 (235)
Q Consensus 153 l~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-~~~~~-i~~~~~ 196 (235)
=- |...|=--..+|.++.|+|+|||.|.+.+.. ++.+. +.....
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~ 179 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLE 179 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHh
Confidence 21 2111112258999999999999999997544 44444 444433
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.3e-05 Score=69.97 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=66.6
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH-HHHc----Cc--cccccccccCCCCCC-Ccc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV-IYER----GL--IGIYHDWCEGFSTYP-RTY 144 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~-~~~R----gl--~~~~~~~~e~l~~~p-~sF 144 (235)
++..|...+..+||+||||+|..+|-|++.. ..|+.++.-..|.. |.++ |+ +...|++. ..-+.+ ..|
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~~~~aPy 139 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHGDG-SKGWPEEAPY 139 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-ccCCCCCCCc
Confidence 4555666678999999999999999998753 36888887755543 3322 43 22333221 112223 899
Q ss_pred ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
|.|+.+.....+| ..| .+-|||||.+++-..
T Consensus 140 D~I~Vtaaa~~vP------~~L---l~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVP------EAL---LDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCC------HHH---HHhcccCCEEEEEEc
Confidence 9999988886654 333 346999999999865
No 163
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.09 E-value=1.8e-05 Score=74.15 Aligned_cols=109 Identities=11% Similarity=0.190 Sum_probs=69.4
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCC-CCCCCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGF-STYPRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l-~~~p~sFDlV~a~~vl 153 (235)
..+|||++||+|.|+..++..+ ..|+++|.+ .++..+.+. |+ +..+....+.+ +.....||+|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence 4689999999999999998764 469999999 888866543 32 11222222221 1112569999874
Q ss_pred ccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeE
Q 026623 154 SLYENTCKP-EDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTK 203 (235)
Q Consensus 154 ~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~ 203 (235)
|.+..+ ..++..+ .-++|++.++++-++.. ..-+..+ -.|++.
T Consensus 308 ---PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 308 ---PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ---CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 333333 3444444 45899999999977664 3445544 347665
No 164
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.04 E-value=5.2e-05 Score=69.20 Aligned_cols=125 Identities=20% Similarity=0.288 Sum_probs=88.2
Q ss_pred CCCceEeeeccccchHHH-HHhcCCCceeEEeecCcc-ccHH----HHHHcCcccc---ccccccC---CCCCCCcccee
Q 026623 80 RRYRNVMDMNAGLGGFAA-ALESPKSWVMNVVPTTAK-NTLG----VIYERGLIGI---YHDWCEG---FSTYPRTYDLI 147 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa-~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~---~~~~~e~---l~~~p~sFDlV 147 (235)
+..-+||||.||.|.+.- +|.+.+.-...|.-.|.+ ..++ .+.+|||-.. .+..|=. +....-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 456699999999998644 444444324578888998 5555 5888998554 2222211 11122457999
Q ss_pred eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe--ChHHHHHHHHHHhc----cCceeEe
Q 026623 148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD--EVDALNKVRKFAEG----MRWDTKM 204 (235)
Q Consensus 148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d--~~~~~~~i~~~~~~----~~W~~~~ 204 (235)
+.+.+++.+++..-+...|.-+.+.|.|||++|.+- -++.++.|.+.+.+ --|..+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 999999999764446678999999999999999997 34567777777755 4687763
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=70.80 Aligned_cols=125 Identities=22% Similarity=0.246 Sum_probs=76.9
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCc----ccccccccc-CCCCCC-Cccc
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGL----IGIYHDWCE-GFSTYP-RTYD 145 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl----~~~~~~~~e-~l~~~p-~sFD 145 (235)
.+.....+|||.+.|.|.+|..-.+++. ..|.-+... +.|+.+. .|+| +..++..|. ....++ .+||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 4555678999999999999988888874 234444333 4343321 2333 233343333 344455 8899
Q ss_pred eeee-hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe--------ChHHHHHHHHHHhccCceeEe
Q 026623 146 LIHA-NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD--------EVDALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 146 lV~a-~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d--------~~~~~~~i~~~~~~~~W~~~~ 204 (235)
+|+- -=-|++-.. ---+.+-.|++|||||||.++=-. ..+...++.+.+++..+.+..
T Consensus 208 aIiHDPPRfS~Age-LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 208 AIIHDPPRFSLAGE-LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred eEeeCCCccchhhh-HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 9863 111221100 001589999999999999987653 223456777888888888554
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.00 E-value=1.8e-05 Score=77.01 Aligned_cols=120 Identities=9% Similarity=0.117 Sum_probs=74.5
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH----HHHHcCcccc--ccccccCC-CCCC-Cccceeeehh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG----VIYERGLIGI--YHDWCEGF-STYP-RTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~----~~~~Rgl~~~--~~~~~e~l-~~~p-~sFDlV~a~~ 151 (235)
....+||+|||.|.|+..++.... ..|++|++.. .-+. .+.++|+... +.+..+.+ ..++ +++|-|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467899999999999999998633 3589999997 4333 3444555222 22111111 2344 9999998743
Q ss_pred hhc-----cCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHH-HhccCce
Q 026623 152 VFS-----LYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKF-AEGMRWD 201 (235)
Q Consensus 152 vl~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~-~~~~~W~ 201 (235)
==- |.+.|=--..+|.++.|+|||||.+.+.. ..++.+.+... ...-.|+
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~ 482 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE 482 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence 321 22111112589999999999999888874 55554443333 3333444
No 167
>PRK04148 hypothetical protein; Provisional
Probab=97.97 E-value=2.3e-05 Score=63.94 Aligned_cols=93 Identities=13% Similarity=0.234 Sum_probs=62.2
Q ss_pred hCCCCCceEeeeccccch-HHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC--Cccceeeehhh
Q 026623 77 IGTRRYRNVMDMNAGLGG-FAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP--RTYDLIHANGV 152 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~-faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p--~sFDlV~a~~v 152 (235)
+...+..+|||+|||+|. ++..|.+.+ .+|+++|.+ ..++.+.++++....-|..+ |... +.+|+|.+
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liys--- 83 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYS--- 83 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEE---
Confidence 333345789999999995 999999876 479999999 88888888887555544443 2222 78999987
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
++...++...+.++.+-+ |.-++|.
T Consensus 84 ---irpp~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 84 ---IRPPRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred ---eCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 222234555565555533 3445555
No 168
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.95 E-value=1.9e-05 Score=68.14 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=57.9
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccc-cCCCCCCCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWC-EGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~-e~l~~~p~sFDlV~a~~vl 153 (235)
..+|||+|||+|.++..++.++ ...|+++|.+ +.+..+.+. |+ +..++..+ +.++...+.||+|+++==+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 4589999999999998654444 2479999998 666654332 32 11222222 2232223579999984332
Q ss_pred ccCCCCCC-hHHHHHHHhh--hhcCCcEEEEEeCh
Q 026623 154 SLYENTCK-PEDILLEMDR--ILRPEGAVIFRDEV 185 (235)
Q Consensus 154 ~h~~~~~~-~~~~L~Em~R--VLRPGG~lii~d~~ 185 (235)
. .. .+.++.-+.. +|+|+|.+++.-..
T Consensus 132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 12 2334443333 47999999998654
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.92 E-value=1.4e-05 Score=71.70 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=50.1
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC---ccccccccccCCCCCCCccceeeehhh
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG---LIGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg---l~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
+......+|||+|||+|.++..|++++. .|+++|.+ ++++.+.++. -+..++.....+++.+-.+|.|++|-=
T Consensus 38 l~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 38 AGPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred cCCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 3434467899999999999999998752 69999999 8998876652 233344444445422222588887643
No 170
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.92 E-value=3.4e-05 Score=74.24 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=73.2
Q ss_pred ccCCcccCCCCcccccCccccccccccccchHHHHHHHHHHHHHh-----hhhCCC----CCceEeeeccccchHHHHHh
Q 026623 30 KKFPSRLFDVPPRIANGEVEGVTGKSYQEDSKLWKKHVNAYKKMN-----SLIGTR----RYRNVMDMNAGLGGFAAALE 100 (235)
Q Consensus 30 ~~wp~rl~~~p~rl~~~~~~g~~~~~f~~d~~~W~~~v~~y~~~l-----~~l~~~----~~r~VLD~GCG~G~faa~L~ 100 (235)
..+..+|..|..=|.+. ....+.+.|+.|.-. -..|.+.+ ...... +...|||+|||+|-+...-+
T Consensus 131 ~~~~d~Lq~PLqPl~dn-L~s~tYe~fE~D~vK----Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al 205 (448)
T PF05185_consen 131 SGYEDYLQAPLQPLMDN-LESQTYEVFEKDPVK----YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFAL 205 (448)
T ss_dssp ------EE----TTTS----HHHHHHHCC-HHH----HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHH
T ss_pred hhchhhccCCCCCchhh-hccccHhhHhcCHHH----HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHH
Confidence 34555565554334332 222356789888764 22333322 222222 13579999999998754332
Q ss_pred cCC---CceeEEeecCcc-ccHHHH----HHcCc---cccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHH
Q 026623 101 SPK---SWVMNVVPTTAK-NTLGVI----YERGL---IGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEM 169 (235)
Q Consensus 101 ~~~---~~~~~V~~~D~s-~~L~~~----~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em 169 (235)
+.+ .-...|.+++.+ ++.... ...|. +..++...+.+. .|...|+|++-.+=+.. +.+-+...|.-.
T Consensus 206 ~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg-~nEl~pE~Lda~ 283 (448)
T PF05185_consen 206 QAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFG-DNELSPECLDAA 283 (448)
T ss_dssp HTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTB-TTTSHHHHHHHG
T ss_pred HHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCcc-ccccCHHHHHHH
Confidence 211 113468888887 333222 33343 556676666665 45799999984332222 334566789999
Q ss_pred hhhhcCCcEEE
Q 026623 170 DRILRPEGAVI 180 (235)
Q Consensus 170 ~RVLRPGG~li 180 (235)
+|.|||||.+|
T Consensus 284 ~rfLkp~Gi~I 294 (448)
T PF05185_consen 284 DRFLKPDGIMI 294 (448)
T ss_dssp GGGEEEEEEEE
T ss_pred HhhcCCCCEEe
Confidence 99999999865
No 171
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.91 E-value=1.7e-05 Score=73.70 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcCc---cccccccccCCCCCCCccceeeehhhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERGL---IGIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
+.+.|||+|||+|-++..=++.| ...|.++|.|++.+. +.+.|+ +..+..-.|.+.......|+|++...=
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 46789999999998877666666 567999999976664 444454 233333345443125999999983321
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+.+-...=+..+|.-=+|=|+|||.++=+
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 11100012457788889999999987533
No 172
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=0.00031 Score=63.90 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cc---ccc
Q 026623 59 DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GL---IGI 129 (235)
Q Consensus 59 d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~ 129 (235)
+++.|-..|.+-....... ....|||+|||+|-++..|+.. + ...|+++|.| ..+..+.+. ++ +..
T Consensus 129 ETEE~V~~Vid~~~~~~~~---~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHS---KHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred cHHHHHHHHHHHHhhhhhc---ccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 4666666665422222222 2337999999999999888874 3 3468999999 777766553 22 333
Q ss_pred ccc-----cccCCCCCCCccceeeehh--hhc------------cCC-------CCC--ChHHHHHHHhhhhcCCcEEEE
Q 026623 130 YHD-----WCEGFSTYPRTYDLIHANG--VFS------------LYE-------NTC--KPEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 130 ~~~-----~~e~l~~~p~sFDlV~a~~--vl~------------h~~-------~~~--~~~~~L~Em~RVLRPGG~lii 181 (235)
.|. +.+..+...+.+|+++||= +.+ |.+ ..+ .+..++.=.-|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 333 3333443449999999852 222 110 000 012455667899999999999
Q ss_pred EeC-----hHHHHHH-HHHHhccCceeEee-cCCCCCCCCceEEEEEe
Q 026623 182 RDE-----VDALNKV-RKFAEGMRWDTKMM-DHEDGPLMPEKILIAVK 222 (235)
Q Consensus 182 ~d~-----~~~~~~i-~~~~~~~~W~~~~~-~~~~~~~~~e~~l~~~k 222 (235)
.-. ......+ ....+.--|.+.++ |.- +.+++++..+
T Consensus 284 e~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~----~~~Rfv~i~r 327 (328)
T KOG2904|consen 284 ELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFA----GRPRFVIIHR 327 (328)
T ss_pred EecccccCcHHHHHHHHhchhhccchhheeeccc----CCcceEEEEe
Confidence 843 2223222 23344444555432 222 5778877654
No 173
>PLN02476 O-methyltransferase
Probab=97.88 E-value=0.00013 Score=66.32 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=80.7
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCcc---ccccccc-cCCCCC-----CCcc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGLI---GIYHDWC-EGFSTY-----PRTY 144 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl~---~~~~~~~-e~l~~~-----p~sF 144 (235)
...++||++|+|+|..+.+|+.. +. ...|+.+|.. +.+.++.+ -|+- ...++.+ +.|+.. +++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34679999999999998888752 21 1248888887 66665433 3542 1222211 223321 3689
Q ss_pred ceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh------------HHHHHHHH----HHhccCceeEeecCC
Q 026623 145 DLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV------------DALNKVRK----FAEGMRWDTKMMDHE 208 (235)
Q Consensus 145 DlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~------------~~~~~i~~----~~~~~~W~~~~~~~~ 208 (235)
|+|+... ++.+...++....+.|||||.+++.+.. .....|++ +...=++...+...
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi- 268 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI- 268 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe-
Confidence 9998732 2234578899999999999999987410 01112333 34555677665432
Q ss_pred CCCCCCceEEEEEec
Q 026623 209 DGPLMPEKILIAVKQ 223 (235)
Q Consensus 209 ~~~~~~e~~l~~~k~ 223 (235)
.+.+++++|+
T Consensus 269 -----gDGl~i~~K~ 278 (278)
T PLN02476 269 -----GDGMTICRKR 278 (278)
T ss_pred -----CCeeEEEEEC
Confidence 3568888874
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.88 E-value=6.8e-05 Score=65.87 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccc---ccc--ccccCCC-CCCCcccee
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIG---IYH--DWCEGFS-TYPRTYDLI 147 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~~--~~~e~l~-~~p~sFDlV 147 (235)
...++||.+|.+.|.-+..|+.. +. -..++.+|.. ++...|++- |+-. .+. +..+.|. ...++||+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 35689999999999877777653 21 2368899998 777765542 4322 222 3334444 456999999
Q ss_pred eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+... ++.+-..++.+.-+.|||||.+++-+
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 8632 23345799999999999999999884
No 175
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00016 Score=64.27 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=91.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc--cccccccccCCCC--CCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL--IGIYHDWCEGFST--YPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl--~~~~~~~~e~l~~--~p~sFDlV~a~~vl~h 155 (235)
..+.+||+|+-||||+--+.+++ +-.|.++|.. +.|.--.+... +..-......+.. +.+..|+++|.-.|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI- 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI- 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh-
Confidence 47899999999999999999988 4579999998 77765433322 1110000111211 124678999977773
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE-------------------e---ChHHHHHHHHHHhccCceeE-eecCC-CCC
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR-------------------D---EVDALNKVRKFAEGMRWDTK-MMDHE-DGP 211 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------d---~~~~~~~i~~~~~~~~W~~~-~~~~~-~~~ 211 (235)
.+..+|-.+..+|.|+|.++.. | ...++.++.++++...|.+. ...++ .|.
T Consensus 156 -----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 156 -----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred -----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 5679999999999999998876 2 22457889999999999986 33333 444
Q ss_pred CCCceEEEEEe
Q 026623 212 LMPEKILIAVK 222 (235)
Q Consensus 212 ~~~e~~l~~~k 222 (235)
.+..++|++-|
T Consensus 231 ~GNiE~l~~~~ 241 (245)
T COG1189 231 KGNIEFLLLLK 241 (245)
T ss_pred CCcEeeeeeee
Confidence 44445665543
No 176
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.0004 Score=60.88 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=94.8
Q ss_pred cchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc----ccHHH-HHHcCcc--c
Q 026623 58 EDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK----NTLGV-IYERGLI--G 128 (235)
Q Consensus 58 ~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s----~~L~~-~~~Rgl~--~ 128 (235)
...+.|.+++-+-....+.+... ..+++|+|.|.| |.-.++.... .+|+-+|.. +.|.. +.+-||. .
T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~---~~vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPD---LKVTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred CHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccC---CcEEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 33678887776544434333221 479999999999 4444444433 248888875 33443 3344664 4
Q ss_pred cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE---eChHHHHHHHHHHhccCceeEee
Q 026623 129 IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR---DEVDALNKVRKFAEGMRWDTKMM 205 (235)
Q Consensus 129 ~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~---d~~~~~~~i~~~~~~~~W~~~~~ 205 (235)
.+|...|.+.--++.||+|.| +..+++..++.=+...||+||.++.- -..+...++++-.....+.+..+
T Consensus 121 i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 121 IVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 567777877622222999987 33346677777788999999987533 34556777788888888887755
Q ss_pred cCCCCCC-CCceEEEE
Q 026623 206 DHEDGPL-MPEKILIA 220 (235)
Q Consensus 206 ~~~~~~~-~~e~~l~~ 220 (235)
..-.-|. ..++.|+.
T Consensus 194 ~~~~~p~~~~~r~l~i 209 (215)
T COG0357 194 FSLTVPELDGERHLVI 209 (215)
T ss_pred EEeecCCCCCceEEEE
Confidence 5443333 23455443
No 177
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=6.2e-05 Score=67.26 Aligned_cols=102 Identities=7% Similarity=0.078 Sum_probs=65.2
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-------c--c----c------------------
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-------L--I----G------------------ 128 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-------l--~----~------------------ 128 (235)
....+||+||..|.+++.+++... ...|.++|+- ..++.|...- . . .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 456799999999999999988632 3458899996 4444443320 0 0 0
Q ss_pred ---------------cccccccCCCCCCCccceeeehhhhc--cCCC-CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 129 ---------------IYHDWCEGFSTYPRTYDLIHANGVFS--LYEN-TCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 129 ---------------~~~~~~e~l~~~p~sFDlV~a~~vl~--h~~~-~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.+....+-|-.-.+.||+|.|-.+=. |+.+ ...+..+++.+.|.|.|||+||+--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00000000111127899999844432 6632 2238899999999999999999984
No 178
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.79 E-value=4.2e-05 Score=68.00 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=49.3
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccceeeehhhh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
.+..+|||+|||+|.++..|.+++ ..|+++|.+ .+++.+.++- -+..++.....+++ ..||.|++|.=+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~--~~~d~Vv~NlPy 101 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL--PEFNKVVSNLPY 101 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc--hhceEEEEcCCc
Confidence 346799999999999999999874 369999999 8888776642 13334443444442 358999886554
No 179
>PLN02823 spermine synthase
Probab=97.77 E-value=0.00043 Score=64.38 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-cc---------cccccccc-CCCCCCCccceee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-LI---------GIYHDWCE-GFSTYPRTYDLIH 148 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-l~---------~~~~~~~e-~l~~~p~sFDlV~ 148 (235)
..++||-+|+|.|+.+.++.+.+. +..|+.+|+. +.++++.+.- +. ..+.+++- -+...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 467999999999999998887532 3578888888 7777766531 11 11111111 1222347999999
Q ss_pred ehhhhccCC-CCCC---hHHHHH-HHhhhhcCCcEEEEE
Q 026623 149 ANGVFSLYE-NTCK---PEDILL-EMDRILRPEGAVIFR 182 (235)
Q Consensus 149 a~~vl~h~~-~~~~---~~~~L~-Em~RVLRPGG~lii~ 182 (235)
+.. ..... ..+. -..++. .+.|.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 863 21110 0000 136777 899999999999876
No 180
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.77 E-value=4.8e-05 Score=66.70 Aligned_cols=125 Identities=14% Similarity=0.231 Sum_probs=82.6
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcccccccccc-CCCCCC-CccceeeehhhhccCCCCC
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCE-GFSTYP-RTYDLIHANGVFSLYENTC 160 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e-~l~~~p-~sFDlV~a~~vl~h~~~~~ 160 (235)
-++||+||=....+ ....+ | .+|+++|+...-+-+.+ .|..+ ++|.-+ +.||+|.++.||.++|+..
T Consensus 53 lrlLEVGals~~N~--~s~~~-~-fdvt~IDLns~~~~I~q-------qDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSG-W-FDVTRIDLNSQHPGILQ-------QDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCc--ccccC-c-eeeEEeecCCCCCCcee-------eccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 58999998754432 22222 3 46999999742222211 22223 356555 8999999999999998655
Q ss_pred ChHHHHHHHhhhhcCCcE-----EEEEe------ChHH--HHHHHHHHhccCceeEeecCCCCCCCCceEEEEEe
Q 026623 161 KPEDILLEMDRILRPEGA-----VIFRD------EVDA--LNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVK 222 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~-----lii~d------~~~~--~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k 222 (235)
.--+.|+-+.+.|||+|. ++|.- +..+ .+.+..+..++......+..- .+=.+..++|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~----~Kl~y~l~r~ 192 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS----KKLAYWLFRK 192 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec----CeEEEEEEee
Confidence 556899999999999999 66663 2222 457888999999987755322 2334455555
No 181
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.73 E-value=9.3e-05 Score=64.18 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=79.0
Q ss_pred CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----cCcc---cccccc-ccCCCC----C-CCccc
Q 026623 81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----RGLI---GIYHDW-CEGFST----Y-PRTYD 145 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----Rgl~---~~~~~~-~e~l~~----~-p~sFD 145 (235)
+.++||.+||++|.-+..|+.. + ....|+.+|.. +..++|.+ -|+- ...+.. .+.|+. . +++||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~-~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALP-EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTST-TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhc-ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4679999999999988888753 2 12468888887 66665433 3542 222221 122221 2 36899
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-------------H--HHHH-HHHHHhccCceeEeecCCC
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-------------D--ALNK-VRKFAEGMRWDTKMMDHED 209 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-------------~--~~~~-i~~~~~~~~W~~~~~~~~~ 209 (235)
+|+...-= .+....+..+.+.|||||.+++.+.. . .+.+ .+.+...=+.++.+..
T Consensus 124 ~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp--- 194 (205)
T PF01596_consen 124 FVFIDADK------RNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP--- 194 (205)
T ss_dssp EEEEESTG------GGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC---
T ss_pred EEEEcccc------cchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE---
Confidence 99974432 24568888899999999999999511 1 1222 2233444566665432
Q ss_pred CCCCCceEEEEEec
Q 026623 210 GPLMPEKILIAVKQ 223 (235)
Q Consensus 210 ~~~~~e~~l~~~k~ 223 (235)
-.+.+++++|+
T Consensus 195 ---igdGl~l~~K~ 205 (205)
T PF01596_consen 195 ---IGDGLTLARKR 205 (205)
T ss_dssp ---STTEEEEEEE-
T ss_pred ---eCCeeEEEEEC
Confidence 24678888885
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.73 E-value=0.00021 Score=63.09 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=47.9
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCCccc---eee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPRTYD---LIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~sFD---lV~ 148 (235)
++..+..+|||+|||+|.++..|.++.. .|+++|.+ ++++.+.++- -+..++..+..+++ ..|| +|+
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--~~~d~~~~vv 99 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--PDFPKQLKVV 99 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh--hHcCCcceEE
Confidence 4444567999999999999999998753 48999998 7877765542 12334444444442 2566 666
Q ss_pred ehhh
Q 026623 149 ANGV 152 (235)
Q Consensus 149 a~~v 152 (235)
++.-
T Consensus 100 sNlP 103 (253)
T TIGR00755 100 SNLP 103 (253)
T ss_pred EcCC
Confidence 6443
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.72 E-value=0.00013 Score=70.72 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=66.0
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH---c-Cccc--cccccccCCC-CCCCccceee-
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE---R-GLIG--IYHDWCEGFS-TYPRTYDLIH- 148 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~---R-gl~~--~~~~~~e~l~-~~p~sFDlV~- 148 (235)
...+..+|||++||.|+=+.+|++.-.-...|++.|.+ ..+....+ | |+.. +.+.....++ .++..||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 44567899999999998766665531001258999998 66665433 2 5522 2222223332 4568899999
Q ss_pred ---eh--hhhccCCC----C--CCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ---AN--GVFSLYEN----T--CKP-------EDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 ---a~--~vl~h~~~----~--~~~-------~~~L~Em~RVLRPGG~lii~d 183 (235)
|| .+|..-++ + .++ .++|....+.|||||++|-++
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 44 22322110 0 001 378889999999999999996
No 184
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=1.2e-05 Score=67.42 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 137 FSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 137 l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.+|.|+|.|+|.|.+|++|+.- .+-..+++|.+|+|||||++-|.
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 5666799999999999999853 35679999999999999999998
No 185
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.67 E-value=0.0001 Score=69.94 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=77.8
Q ss_pred ccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccccc
Q 026623 57 QEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYH 131 (235)
Q Consensus 57 ~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~ 131 (235)
..++-.|-.+-..-..+-..++ +++|||+=|=||+|+.+-+..| +..|+.+|.| ..|+.+.+. |+...-|
T Consensus 196 g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 196 GLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred cccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 4445555544444333222232 6799999999999998888766 3479999999 888877664 4433223
Q ss_pred cccc--CCCC---CC---Cccceeeeh-hhhccCC-----CCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 132 DWCE--GFST---YP---RTYDLIHAN-GVFSLYE-----NTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 132 ~~~e--~l~~---~p---~sFDlV~a~-~vl~h~~-----~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
.|-. .|.+ +. .+||+|+.. =.|..-+ -..+..+++.+..++|+|||.++++.+.
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 3322 1222 22 499999971 1111000 0013358899999999999999999754
No 186
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.61 E-value=0.00051 Score=61.88 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=76.5
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH--cCccccccc-cccCCC--CCC-Cccceeeehh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE--RGLIGIYHD-WCEGFS--TYP-RTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~--Rgl~~~~~~-~~e~l~--~~p-~sFDlV~a~~ 151 (235)
-..++|||+|||+|.-+.+..+. + -...++.+|.| .|++++.. +........ |-..+- ..+ ...|||++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASY 110 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEeh
Confidence 34679999999999866555542 2 23578899999 88875332 111111110 101111 111 3349999999
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~ 204 (235)
+|..+++ .....++..+.+-+.+ .+||-|.- ..+.++...+....+.+..
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 9999976 6677888888777766 88888732 2466677777655555553
No 187
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.60 E-value=9.1e-05 Score=62.60 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=69.0
Q ss_pred hCCCCCceEeeeccccchHHHH--HhcCCCc------eeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCC
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAA--LESPKSW------VMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTY 140 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~--L~~~~~~------~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~ 140 (235)
.++.....|||-=||+|++... +.....- ...+.+.|.. +++..+.+. |+ +......+..+++.
T Consensus 24 a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~ 103 (179)
T PF01170_consen 24 AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP 103 (179)
T ss_dssp TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT
T ss_pred hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc
Confidence 3455567899999999998632 2222211 1237799998 887765442 33 22333345567756
Q ss_pred CCccceeeehhhhcc-CCCCC----ChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623 141 PRTYDLIHANGVFSL-YENTC----KPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 141 p~sFDlV~a~~vl~h-~~~~~----~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~ 203 (235)
++++|+|+++-=+-. +.... -...++.|+.|+|+|...+++.....+ ++.+....|+..
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~ 167 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR 167 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence 699999999543321 00000 123789999999999666666665543 344444466654
No 188
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.57 E-value=0.00021 Score=63.84 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=72.4
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc----Cccc---c-cccccc-CCCC-CCCc
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER----GLIG---I-YHDWCE-GFST-YPRT 143 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~-~~~~~e-~l~~-~p~s 143 (235)
.++-.++.+||+.|.|+|.++.+|+.. +. ...|...|.. +....|.+. |+.. . ..|.|+ .|+- .++.
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p-~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGP-TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTT-TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCC-CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 355566889999999999999999852 11 2368888887 666655442 5532 2 245553 3421 2378
Q ss_pred cceeeehhhhccCCCCCChHHHHHHHhhhh-cCCcEEEEEe-ChHHHHHHHHHHhccCce
Q 026623 144 YDLIHANGVFSLYENTCKPEDILLEMDRIL-RPEGAVIFRD-EVDALNKVRKFAEGMRWD 201 (235)
Q Consensus 144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVL-RPGG~lii~d-~~~~~~~i~~~~~~~~W~ 201 (235)
||.|+. |-.++-.++.-+.++| ||||.+++-- +.+.+.+.-.-++...|.
T Consensus 114 ~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 114 FDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp EEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred ccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 999986 4457778999999999 9999988864 444443433344445554
No 189
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.49 E-value=0.0006 Score=61.72 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHH---HHHHcCc----c---ccccccccC-------------
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLG---VIYERGL----I---GIYHDWCEG------------- 136 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~---~~~~Rgl----~---~~~~~~~e~------------- 136 (235)
..-+||==|||.|.++-.++.+|. .+.+.+.| -||- ++..... . ..+|.+|-.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 346899999999999999999864 58888888 6654 3333210 0 011111110
Q ss_pred -------------CC--------CC--C---CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--------
Q 026623 137 -------------FS--------TY--P---RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR-------- 182 (235)
Q Consensus 137 -------------l~--------~~--p---~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~-------- 182 (235)
|+ .| + ++||+|++.+.+.- -.++.+.|..|.++|||||+ +|.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~-WIN~GPLlyh~ 208 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGY-WINFGPLLYHF 208 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCE-EEecCCccccC
Confidence 10 12 2 59999998766642 23688999999999999994 444
Q ss_pred -eC-------hH-HHHHHHHHHhccCceeEe
Q 026623 183 -DE-------VD-ALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 183 -d~-------~~-~~~~i~~~~~~~~W~~~~ 204 (235)
+. .+ .+++|..+++++.|+...
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 22 23 278999999999999864
No 190
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00066 Score=58.56 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=57.1
Q ss_pred cccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--ccccc
Q 026623 54 KSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LIGIY 130 (235)
Q Consensus 54 ~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~~~~ 130 (235)
|.|..+...=...+.. ....+.-..+.|+|+|||||.|+-..+-.+. -.|+++|.- ++++++.+.- +.+.+
T Consensus 22 EQY~Tp~~~Aa~il~~----a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v 95 (198)
T COG2263 22 EQYRTPAPLAAYILWV----AYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDV 95 (198)
T ss_pred eecCCChHHHHHHHHH----HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCce
Confidence 4566666642222221 1113444567899999999987655555442 358899887 7777654431 33333
Q ss_pred cccccCCCCCCCccceeeehhhhc
Q 026623 131 HDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 131 ~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
--.+.+...+..-||.|+.|==|-
T Consensus 96 ~f~~~dv~~~~~~~dtvimNPPFG 119 (198)
T COG2263 96 EFVVADVSDFRGKFDTVIMNPPFG 119 (198)
T ss_pred EEEEcchhhcCCccceEEECCCCc
Confidence 222344666778999988865554
No 191
>PRK00536 speE spermidine synthase; Provisional
Probab=97.46 E-value=0.00087 Score=60.39 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=64.3
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cccc---cccccccCCCCCCCccce
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GLIG---IYHDWCEGFSTYPRTYDL 146 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl~~---~~~~~~e~l~~~p~sFDl 146 (235)
+...+.++||=+|-|-|+.++.+.+.+. .|+-+|+- ..++.+++- ++-. .++.+.. ....++||+
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~--~~~~~~fDV 142 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDIKKYDL 142 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--hccCCcCCE
Confidence 3445679999999999999999999862 67777776 566554431 1100 0011111 112378999
Q ss_pred eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+....+ -..+...++|.|+|||.++..-
T Consensus 143 IIvDs~~--------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 143 IICLQEP--------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEcCCC--------ChHHHHHHHHhcCCCcEEEECC
Confidence 9986543 2577789999999999999975
No 192
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.44 E-value=0.00071 Score=62.55 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=75.7
Q ss_pred cccccccchHHHHHHHHHHHH-HhhhhCCCCCceEeeeccccchH----HHHHhcCCCceeEEeecCcc-ccHHHHHHcC
Q 026623 52 TGKSYQEDSKLWKKHVNAYKK-MNSLIGTRRYRNVMDMNAGLGGF----AAALESPKSWVMNVVPTTAK-NTLGVIYERG 125 (235)
Q Consensus 52 ~~~~f~~d~~~W~~~v~~y~~-~l~~l~~~~~r~VLD~GCG~G~f----aa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg 125 (235)
.+|-|...++. .....+.. +...++. ...++|+|||.|.= ..+|...+. ....+|+|+| +.|+.+.++-
T Consensus 50 lpEYYptr~E~--~iL~~~~~~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L 124 (319)
T TIGR03439 50 SPEYYLTNDEI--EILKKHSSDIAASIPS--GSMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred CCccCChHHHH--HHHHHHHHHHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhh
Confidence 46677776663 44444333 3334554 34799999999964 445543221 2368999999 8998655531
Q ss_pred ------------ccccccccccCCCC--CCCccceeee-hhhhccCCCCCChHHHHHHHhh-hhcCCcEEEEE
Q 026623 126 ------------LIGIYHDWCEGFST--YPRTYDLIHA-NGVFSLYENTCKPEDILLEMDR-ILRPEGAVIFR 182 (235)
Q Consensus 126 ------------l~~~~~~~~e~l~~--~p~sFDlV~a-~~vl~h~~~~~~~~~~L~Em~R-VLRPGG~lii~ 182 (235)
+.+++.+-.+-++. .+....++.. ...|.++. +.+...+|.++.+ .|+|||.|+|.
T Consensus 125 ~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 125 PLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 12222111111221 1234555544 45666663 3455699999999 99999999997
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.40 E-value=0.0027 Score=59.43 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCC--CCccceeeehhhhccCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTY--PRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~--p~sFDlV~a~~vl~h~~~ 158 (235)
++.++||+||++|||+..|.+++ +.|+++|...+-+...+-+.+..+.. ..+-+. ++.+|+|+|..+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEeccc-----
Confidence 56799999999999999999987 37999997655554444444333211 122222 5889999996553
Q ss_pred CCChHHHHHHHhhhhcCC--cEEEEE
Q 026623 159 TCKPEDILLEMDRILRPE--GAVIFR 182 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPG--G~lii~ 182 (235)
.+..++.=|.+-|..| ..+|++
T Consensus 281 --~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 --KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5678888888888776 456776
No 194
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.33 E-value=0.0007 Score=57.74 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=58.6
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccc-cCCCCC--C-Cccceeee
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWC-EGFSTY--P-RTYDLIHA 149 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~-e~l~~~--p-~sFDlV~a 149 (235)
..+|||++||+|.++.++..++. ..|+.+|.+ ..++.+.+. ++. ..+...+ +.+... . ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46899999999999999998874 369999998 666654432 321 1222222 112211 2 24788876
Q ss_pred hhhhccCCCCCChHHHHHHH--hhhhcCCcEEEEEeCh
Q 026623 150 NGVFSLYENTCKPEDILLEM--DRILRPEGAVIFRDEV 185 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em--~RVLRPGG~lii~d~~ 185 (235)
.==+.. .....++.-+ ..+|+++|.+|+....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 333321 1233443333 4578999988876543
No 195
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.32 E-value=0.00085 Score=62.52 Aligned_cols=124 Identities=12% Similarity=0.109 Sum_probs=71.9
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CCC------C---------
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FST------Y--------- 140 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~~------~--------- 140 (235)
+|||++||+|.|+.+|++.. ..|+++|.+ +++..+.+. |+ +..+....+. ++. +
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 59999999999999998763 369999999 888876653 32 1122211111 110 0
Q ss_pred CCccceeeehhhhccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHH-HHHHHHHHhccCceeEe---ecCCCCCCCCc
Q 026623 141 PRTYDLIHANGVFSLYENTCKP-EDILLEMDRILRPEGAVIFRDEVDA-LNKVRKFAEGMRWDTKM---MDHEDGPLMPE 215 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~-~~~i~~~~~~~~W~~~~---~~~~~~~~~~e 215 (235)
...||+|+.. |.+..+ ..++. .+++|++.++++=++.. ..-++.+.++ |++.. .|-=....+-|
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVERFALFDQFPYTHHME 345 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEEcccCCCCCcEE
Confidence 0137888761 122222 23333 34569999999976654 4455655544 77652 22222333556
Q ss_pred eEEEEE
Q 026623 216 KILIAV 221 (235)
Q Consensus 216 ~~l~~~ 221 (235)
.+..-.
T Consensus 346 ~v~lL~ 351 (353)
T TIGR02143 346 CGVLLE 351 (353)
T ss_pred EEEEEE
Confidence 555443
No 196
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.31 E-value=0.00071 Score=62.99 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=70.7
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC 160 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~ 160 (235)
.+...+|+|.|.|..+..+..+..+ +..+..|.+..++.+..-+ .|+-|--++.|-.- -.=|+|++-.++||+.| .
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~-P~~daI~mkWiLhdwtD-e 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDT-PKGDAIWMKWILHDWTD-E 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccC-CCcCeEEEEeecccCCh-H
Confidence 3678999999999999998875333 4556666654444333322 33333333333221 23459999999999965 6
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 161 KPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+..++|+-++--|+|||.+|+-|+
T Consensus 253 dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Confidence 889999999999999999999985
No 197
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.30 E-value=9.1e-05 Score=65.08 Aligned_cols=91 Identities=20% Similarity=0.324 Sum_probs=65.9
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc-ccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI-GIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~-~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
...++||+|+|.|..+..++.. .-.|.+...| .|......++.. -...+|.+ -+=.||+|.|-.+| +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl~~~ew~~----t~~k~dli~clNlL----D 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQ----TDVKLDLILCLNLL----D 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCceeeehhhhh----cCceeehHHHHHHH----H
Confidence 3468999999999998888753 2346777778 555555555542 22334433 23459999998888 5
Q ss_pred CCC-hHHHHHHHhhhhcC-CcEEEEE
Q 026623 159 TCK-PEDILLEMDRILRP-EGAVIFR 182 (235)
Q Consensus 159 ~~~-~~~~L~Em~RVLRP-GG~lii~ 182 (235)
+|. +-.+|.+++-||+| .|.+|+.
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEE
Confidence 554 67999999999999 9999887
No 198
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00049 Score=60.36 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=59.3
Q ss_pred CCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHH----------------HHHcCccccccccccCCCCCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGV----------------IYERGLIGIYHDWCEGFSTYPR 142 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~----------------~~~Rgl~~~~~~~~e~l~~~p~ 142 (235)
++.+.||+|.|+|.+++.+... +.-..++++++.- +.+.. -+++|-+..+...|........
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 3678999999999877665521 1112345777764 33332 1234434444444543332338
Q ss_pred ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 143 TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 143 sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
.||.||+-..- ..+.+|+--.|+|||.++|--.
T Consensus 162 ~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 162 PYDAIHVGAAA---------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CcceEEEccCc---------cccHHHHHHhhccCCeEEEeec
Confidence 99999985333 3566788889999999998754
No 199
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0017 Score=60.54 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc--ccc-cccCCCCCCCccceeeehh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI--YHD-WCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~--~~~-~~e~l~~~p~sFDlV~a~~ 151 (235)
.++.+|||==||||+|+....-.| .+++|.|+. .|+.-+... |+-.. +.. .+..+|+-.++||.|.|.-
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 346689999999999976655443 589999999 887754322 21111 111 3456784447899999832
Q ss_pred hh--c-cCCCCCC----hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623 152 VF--S-LYENTCK----PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 152 vl--~-h~~~~~~----~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~ 203 (235)
=- + -. .... ..++|.++.++||+||++++--+...+.. +..+.+++.
T Consensus 273 PYGrst~~-~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~----~~~~~f~v~ 326 (347)
T COG1041 273 PYGRSTKI-KGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHE----LEELGFKVL 326 (347)
T ss_pred CCCccccc-ccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhh----HhhcCceEE
Confidence 11 1 11 1112 46899999999999999999866443333 344555554
No 200
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.24 E-value=0.00091 Score=56.93 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=76.0
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-cccccccccCC----CCCC-Cccc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-IGIYHDWCEGF----STYP-RTYD 145 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-~~~~~~~~e~l----~~~p-~sFD 145 (235)
+...|++..+..||.+|.|||-|+.++.++++--.+++.++.+ +......++-- ...+...+..+ .-+. .-||
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeee
Confidence 4445777778899999999999999999998766788999888 65554433311 11122222222 2233 8999
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.|+|..=|-.++-. --.++|.+..--|++||-++--.
T Consensus 120 ~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 120 SVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEEE
Confidence 99986655444311 22588999999999999998765
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.22 E-value=0.00051 Score=62.65 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=48.1
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeee
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a 149 (235)
......+|||+|||+|.++..|.+.. ..|+++|.+ ++++.+.++ ++ +..++.++..++ ...||+|++
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--~~~~d~Vva 107 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--FPYFDVCVA 107 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--ccccCEEEe
Confidence 33346789999999999999998864 358999999 888876553 21 233443332222 257899987
Q ss_pred hhhh
Q 026623 150 NGVF 153 (235)
Q Consensus 150 ~~vl 153 (235)
|.=.
T Consensus 108 NlPY 111 (294)
T PTZ00338 108 NVPY 111 (294)
T ss_pred cCCc
Confidence 5444
No 202
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.20 E-value=0.00045 Score=65.19 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=61.3
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCCCCCCccceeeehhhhcc
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
.+|||++||+|.++..++.... +..|+++|.+ +.++.+.+. |+.. .++..++.+-...+.||+|..+= +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 4799999999999998865321 3469999998 777765432 3321 23333332211146799998732 1
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-....+|....+.++|||+++++
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12357777767889999999999
No 203
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.18 E-value=0.0023 Score=59.81 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=72.4
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccC-CCCC--------------
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEG-FSTY-------------- 140 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~-l~~~-------------- 140 (235)
.+|||++||+|.|+.+|+... ..|+++|.+ .+++.+.+. |+ +..+....+. ++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999998753 369999999 888876653 33 1122222221 1100
Q ss_pred -CCccceeeehhhhccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeChHHH-HHHHHHHhccCceeEee---cCCCCCCCC
Q 026623 141 -PRTYDLIHANGVFSLYENTCKP-EDILLEMDRILRPEGAVIFRDEVDAL-NKVRKFAEGMRWDTKMM---DHEDGPLMP 214 (235)
Q Consensus 141 -p~sFDlV~a~~vl~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~~~~-~~i~~~~~~~~W~~~~~---~~~~~~~~~ 214 (235)
...||+|+.. |.+..+ +.++. .+++|++.++++=++..+ .-++.+.+ .|++... |-=....+-
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~~DmFPqT~Hv 353 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVERFALFDQFPYTHHM 353 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEEcccCCCCCcE
Confidence 1258999861 112221 23333 344589999999776543 34665553 5776522 222233355
Q ss_pred ceEEEEE
Q 026623 215 EKILIAV 221 (235)
Q Consensus 215 e~~l~~~ 221 (235)
|.+..-.
T Consensus 354 E~v~lL~ 360 (362)
T PRK05031 354 ECGVLLE 360 (362)
T ss_pred EEEEEEE
Confidence 6655543
No 204
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.16 E-value=0.00036 Score=63.84 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=54.5
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCC-C---Cc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTY-P---RT 143 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~-p---~s 143 (235)
++..+...+...++|.+||+|+.+.++++...-...|+++|.. +++..+.++- -+..+|+....+..+ + .+
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~ 90 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGK 90 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCc
Confidence 3444444445689999999999999998763112479999999 9999887651 133445444433321 1 27
Q ss_pred cceeeehhhhc
Q 026623 144 YDLIHANGVFS 154 (235)
Q Consensus 144 FDlV~a~~vl~ 154 (235)
||.|++....+
T Consensus 91 vDgIl~DLGvS 101 (296)
T PRK00050 91 VDGILLDLGVS 101 (296)
T ss_pred cCEEEECCCcc
Confidence 99998866554
No 205
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0085 Score=54.54 Aligned_cols=140 Identities=9% Similarity=0.049 Sum_probs=80.8
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccccc--C-----------CCCCCCc
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE--G-----------FSTYPRT 143 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e--~-----------l~~~p~s 143 (235)
.....++||=+|-|.|+.++++.+.+. +..++-+|+- ..+..+++. .+..+..+. + +...+++
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~--l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKY--LPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHh--ccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 334458999999999999999998753 4567777776 555554432 111111111 0 1224469
Q ss_pred cceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEeCh-----HHHHHHHHHHhccCceeEeecCC--CCCCCC
Q 026623 144 YDLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRDEV-----DALNKVRKFAEGMRWDTKMMDHE--DGPLMP 214 (235)
Q Consensus 144 FDlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d~~-----~~~~~i~~~~~~~~W~~~~~~~~--~~~~~~ 214 (235)
||+|++...=. .-.-.. -..+++.++|.|+|+|.++..... +.+..+.+..+++.+.+..+... .-+.+-
T Consensus 150 fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~ 228 (282)
T COG0421 150 FDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGF 228 (282)
T ss_pred CCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCc
Confidence 99999733221 000000 168999999999999999999322 22345555566664443322221 111123
Q ss_pred ceEEEEE
Q 026623 215 EKILIAV 221 (235)
Q Consensus 215 e~~l~~~ 221 (235)
..+.++.
T Consensus 229 ~~f~~~s 235 (282)
T COG0421 229 WGFIVAS 235 (282)
T ss_pred eEEEEee
Confidence 4566665
No 206
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.14 E-value=0.0017 Score=60.04 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=45.1
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----c-Cccccc---c-cc----ccCCCCCCCcc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----R-GLIGIY---H-DW----CEGFSTYPRTY 144 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----R-gl~~~~---~-~~----~e~l~~~p~sF 144 (235)
+...+|||+|||+|.++..|..+ +.| .++++|++ ..+..+.+ - ++...+ + .. .+.+....+.|
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 34578999999999888777653 334 69999998 77775443 2 332211 1 01 11111113689
Q ss_pred ceeeehhhhc
Q 026623 145 DLIHANGVFS 154 (235)
Q Consensus 145 DlV~a~~vl~ 154 (235)
|+|+||==|+
T Consensus 191 DlivcNPPf~ 200 (321)
T PRK11727 191 DATLCNPPFH 200 (321)
T ss_pred EEEEeCCCCc
Confidence 9999975554
No 207
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.09 E-value=0.00054 Score=61.55 Aligned_cols=103 Identities=16% Similarity=0.288 Sum_probs=60.3
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH-------------------HHH-cC-----------
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV-------------------IYE-RG----------- 125 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~-------------------~~~-Rg----------- 125 (235)
+...+.++||+|||+--+ ..|... .|..+|+..|.+ ..++. +.+ .|
T Consensus 53 g~~~g~~llDiGsGPtiy-~~lsa~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIY-QLLSAC-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SSS-EEEEEEES-TT--G-GGTTGG-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHH-hhhhHH-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 334568999999999543 333332 256789888886 33331 111 11
Q ss_pred ---ccc-cc-cccccCCCC-----CCCccceeeehhhhccC-CCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 126 ---LIG-IY-HDWCEGFST-----YPRTYDLIHANGVFSLY-ENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 126 ---l~~-~~-~~~~e~l~~-----~p~sFDlV~a~~vl~h~-~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.+. ++ .|..+.-|. .|..||+|++...++-. ++......+|+-+-+.|||||.||+.
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 111 11 111122222 23569999999888754 23334569999999999999999998
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.95 E-value=0.0064 Score=54.84 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=74.1
Q ss_pred hCCCCCceEeeeccccchHHHHHhcC------CCceeEEeecCcc-ccHHHHHH----cCcccc-c-cccccCCCC--C-
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESP------KSWVMNVVPTTAK-NTLGVIYE----RGLIGI-Y-HDWCEGFST--Y- 140 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~------~~~~~~V~~~D~s-~~L~~~~~----Rgl~~~-~-~~~~e~l~~--~- 140 (235)
+......+|||-.||+|+|..+..++ .....++.|+|.. .+..++.- +|.... . ....+.|.. .
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 34455678999999999998777641 0013578999998 66655433 232111 0 011122321 1
Q ss_pred -CCccceeeehhhhccC-------CCC----------CCh-HHHHHHHhhhhcCCcEEEEEeChHH------HHHHHHHH
Q 026623 141 -PRTYDLIHANGVFSLY-------ENT----------CKP-EDILLEMDRILRPEGAVIFRDEVDA------LNKVRKFA 195 (235)
Q Consensus 141 -p~sFDlV~a~~vl~h~-------~~~----------~~~-~~~L~Em~RVLRPGG~lii~d~~~~------~~~i~~~~ 195 (235)
.+.||+|+++-=|... ... ... ..++.-+.+.|++||.+++--+... -.++++.+
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 3689999986544321 000 011 1577889999999999766644332 23455443
Q ss_pred hccCceeEeecCCC----CCCCCceEEEEEec
Q 026623 196 EGMRWDTKMMDHED----GPLMPEKILIAVKQ 223 (235)
Q Consensus 196 ~~~~W~~~~~~~~~----~~~~~e~~l~~~k~ 223 (235)
-.-+.-..+...+. +...+--+|+.+|.
T Consensus 202 l~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 202 LENGYIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp HHHEEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred HhhchhhEEeecccceecccCcCceEEEEeec
Confidence 33333322222222 12244567777765
No 209
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.93 E-value=0.0037 Score=57.05 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=69.0
Q ss_pred ccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Ccccc
Q 026623 55 SYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGI 129 (235)
Q Consensus 55 ~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~ 129 (235)
.|-.|.+.-|..+..+. ..++|||+=|=||+|+.+-+..| +..|+.+|.| ..|+.+.+. |+...
T Consensus 106 GlFlDqR~nR~~v~~~~---------~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKYA---------KGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SS-GGGHHHHHHHHHHC---------TTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred eEcHHHHhhHHHHHHHc---------CCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 45556665454444431 25799999999999998776665 4579999999 888876554 43211
Q ss_pred ccc-ccc-CCCC-----CCCccceeeehh-hhccCCCC----CChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 130 YHD-WCE-GFST-----YPRTYDLIHANG-VFSLYENT----CKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 130 ~~~-~~e-~l~~-----~p~sFDlV~a~~-vl~h~~~~----~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
-|. .++ .|.+ -.+.||+|++.= .|. +.. .+..+++...-++|+|||.++++.+.
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 111 111 1111 137999999710 111 011 13457888899999999999988643
No 210
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.92 E-value=0.0014 Score=56.75 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=54.9
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCc---cccccccccCCCCCCCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGL---IGIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl---~~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
...||||-||.|.|+..++.... ...|.++|.. ....... .-++ +..++.+|..+.. ...||-|+++.
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-- 177 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-- 177 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----
T ss_pred ceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--
Confidence 57999999999999988887211 2358888887 5444322 2233 3344666666653 79999888732
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVI 180 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~li 180 (235)
|. .-..+|.+..+.+|+||.+-
T Consensus 178 ---p~--~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ---PE--SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred ---hH--HHHHHHHHHHHHhcCCcEEE
Confidence 22 22478899999999999864
No 211
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.86 E-value=0.0016 Score=58.07 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHH----HcCcc---cccccc-ccCCCC------CCCc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIY----ERGLI---GIYHDW-CEGFST------YPRT 143 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~----~Rgl~---~~~~~~-~e~l~~------~p~s 143 (235)
...++||.+|+++|.-+.+|+.. +. ...|+.+|.. +...+|. +-|+. ...++. .+.|+. +.++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34679999999999877777642 21 2358888887 5555432 23542 222221 122332 2479
Q ss_pred cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 144 YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 144 FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
||+|+...- +......+..+.+.|||||.+++-+
T Consensus 157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999997432 2234577788889999999988763
No 212
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.039 Score=47.67 Aligned_cols=128 Identities=14% Similarity=0.144 Sum_probs=74.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHH----HHHc-Cccc-cccccccCCCCCCCccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGV----IYER-GLIG-IYHDWCEGFSTYPRTYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~R-gl~~-~~~~~~e~l~~~p~sFDlV~a 149 (235)
|.......+|++|||+|-...+|++.-.-..-....|++ ..+.. |... ..+. +..|....+- +++.|+++-
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvf 116 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVF 116 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEE
Confidence 333346689999999999888888752212345678886 55553 2222 2222 2222222222 377777654
Q ss_pred hhhhccCC------------------CCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCceeEeec
Q 026623 150 NGVFSLYE------------------NTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTKMMD 206 (235)
Q Consensus 150 ~~vl~h~~------------------~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~~~~ 206 (235)
+-=+---+ -+.-+.++|..+.-+|-|-|.|++.-... ...+|-++.++-.|.+++.-
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 32111000 11114578888889999999999985432 34456667788888877543
No 213
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.002 Score=56.20 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=69.0
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCcccccc------ccccCCCCCCCccceeeehhhh--
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYH------DWCEGFSTYPRTYDLIHANGVF-- 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~------~~~e~l~~~p~sFDlV~a~~vl-- 153 (235)
...|+|+||-.|+.+..++++-.-...|+++|+-.|-.+.-=.-+.+.++ ..-+.++ ...+|+|.+...=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~--~~~~DvV~sD~ap~~ 123 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALG--GAPVDVVLSDMAPNT 123 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcC--CCCcceEEecCCCCc
Confidence 57899999999999887776421112366777643222110000011111 0111122 1347998864332
Q ss_pred ------ccCCCCCChHHHHHHHh-hhhcCCcEEEEEeChH-HHHHHHHHHhccCceeEeecCCC-CCCCCceEEEEEe
Q 026623 154 ------SLYENTCKPEDILLEMD-RILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTKMMDHED-GPLMPEKILIAVK 222 (235)
Q Consensus 154 ------~h~~~~~~~~~~L~Em~-RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~~~~~~~-~~~~~e~~l~~~k 222 (235)
.|... ..+..+..||. ++|+|||.|++-+-.. ..+.+-+..+.+-..+.+..... -+...|-+++|.+
T Consensus 124 ~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 124 SGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred CCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 23321 12334555554 5999999999986321 12222333333444444433221 1124688888864
No 214
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.72 E-value=0.022 Score=50.54 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc------Cc----cccccccccC-CCCCCC-cccee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER------GL----IGIYHDWCEG-FSTYPR-TYDLI 147 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R------gl----~~~~~~~~e~-l~~~p~-sFDlV 147 (235)
+.++||=+|-|.|+.+..+.+.+. +..|+.+|+. ..++++.+- ++ ...+++++-. +...++ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 578999999999999999998752 3467788887 666655432 10 1122221111 122345 99999
Q ss_pred eehhhhccCCC-CCChHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCC--CCCCCCceEEE
Q 026623 148 HANGVFSLYEN-TCKPEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHE--DGPLMPEKILI 219 (235)
Q Consensus 148 ~a~~vl~h~~~-~~~~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~--~~~~~~e~~l~ 219 (235)
+....-...+. .---..+++.+.|.|+|||.+++.- ..+....+.+.+++..-.+..+-.. .-+...=-+.+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~ 234 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFAS 234 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEE
Confidence 87332211000 0001589999999999999999974 2334556666666666666543222 11111124666
Q ss_pred EEecc
Q 026623 220 AVKQY 224 (235)
Q Consensus 220 ~~k~~ 224 (235)
+.|..
T Consensus 235 ~s~~~ 239 (246)
T PF01564_consen 235 ASKDI 239 (246)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 66654
No 215
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.69 E-value=0.0043 Score=58.18 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=68.0
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc--C--c---cccccccccCCCCCCCccceeeehhh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER--G--L---IGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R--g--l---~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
-..+.|||+|||.|-+...-+..| ...|.++..|+|.+.+..- | + |..+-+--|.+. .|+..|+|++.-.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEPM 252 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEPM 252 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEEeccc
Confidence 457889999999997554444434 3468899999888865431 1 1 111111114444 5689999997322
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE--e-----ChHHHHHHHHHHhccCcee
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR--D-----EVDALNKVRKFAEGMRWDT 202 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d-----~~~~~~~i~~~~~~~~W~~ 202 (235)
=..+-+ +.+...-.-.+|-|+|.|..+=+ | -.+....++-.-|..-|--
T Consensus 253 G~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQ 308 (517)
T KOG1500|consen 253 GYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQ 308 (517)
T ss_pred hhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhh
Confidence 211212 12223333456999999987644 2 1222334555666677753
No 216
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.67 E-value=0.023 Score=55.43 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=30.7
Q ss_pred CceEeeeccccchHHHHHhcCC-------CceeEEeecCcc-ccHHHHHH
Q 026623 82 YRNVMDMNAGLGGFAAALESPK-------SWVMNVVPTTAK-NTLGVIYE 123 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~-------~~~~~V~~~D~s-~~L~~~~~ 123 (235)
..+|||.+||+|+|..++.++- ....++.++|+. ..+..+..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 4589999999999988876521 124688999998 66665443
No 217
>PRK13699 putative methylase; Provisional
Probab=96.67 E-value=0.0028 Score=55.68 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=18.9
Q ss_pred hHHHHHHHhhhhcCCcEEEEEe
Q 026623 162 PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~d 183 (235)
+..++.|+.|||||||.+++.-
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 3588999999999999998753
No 218
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.012 Score=54.94 Aligned_cols=107 Identities=20% Similarity=0.295 Sum_probs=66.4
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCC-CceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCC-CCC--Cccc
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPK-SWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFS-TYP--RTYD 145 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~-~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~-~~p--~sFD 145 (235)
+...++.+||||+++.||=+.+|+... .-...|+++|.+ .-+....++ |+.. ..+.....++ ..+ ..||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 666678999999999998666665431 001237999998 666654443 5532 2222222233 233 3599
Q ss_pred eeee------hhhhccCC------CCCCh-------HHHHHHHhhhhcCCcEEEEEe
Q 026623 146 LIHA------NGVFSLYE------NTCKP-------EDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 lV~a------~~vl~h~~------~~~~~-------~~~L~Em~RVLRPGG~lii~d 183 (235)
.|.. ..++..-| ...++ ..+|....++|||||.++-++
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9985 34443111 11111 278899999999999999995
No 219
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.51 E-value=0.0055 Score=53.75 Aligned_cols=100 Identities=18% Similarity=0.266 Sum_probs=54.5
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----------Cc---cccccccccCCCCCCCccceee
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----------GL---IGIYHDWCEGFSTYPRTYDLIH 148 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----------gl---~~~~~~~~e~l~~~p~sFDlV~ 148 (235)
-.+-|||||+|+|...|..... -.-+.|..+- ..-+...+| |. ++..+..| +-+.|+-|---.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na--mk~lpn~f~kgq 138 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA--MKFLPNFFEKGQ 138 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc--hhhccchhhhcc
Confidence 3689999999999999988632 2245566553 222222222 11 22332222 223344444333
Q ss_pred ehhhhccCCC---------CCCh-HHHHHHHhhhhcCCcEEEEEeCh
Q 026623 149 ANGVFSLYEN---------TCKP-EDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 149 a~~vl~h~~~---------~~~~-~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
.+-.|.-+++ +.-+ ...+.|..=+||+||.++.....
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 3333322221 0001 27888999999999999887543
No 220
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.014 Score=56.58 Aligned_cols=99 Identities=12% Similarity=0.205 Sum_probs=72.2
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc-----cccccccccCCCCCCCccceeeehhhhccCC
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL-----IGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl-----~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
++|=+|||.-.+...|.+.+ ..+|+.+|+| -.+..+..++. ..........+.|.+.+||+|+.-..|.++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 89999999999999998876 4589999998 56665555542 2222333345676779999999988887763
Q ss_pred CCCC-------hHHHHHHHhhhhcCCcEEEEEeC
Q 026623 158 NTCK-------PEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 158 ~~~~-------~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
...+ ....+.|+.|+|+|||.++.-.-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2111 23678999999999999776643
No 221
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0081 Score=56.59 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCce--eEEeecCccccHHHH-H--HcCcccccccc------ccCCCCCC-Cccceee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWV--MNVVPTTAKNTLGVI-Y--ERGLIGIYHDW------CEGFSTYP-RTYDLIH 148 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~--~~V~~~D~s~~L~~~-~--~Rgl~~~~~~~------~e~l~~~p-~sFDlV~ 148 (235)
.-.+|||+|.|.|.-+.++.+ +|- -+++-+..|..|..+ . ++.....-.+| -+.+++.. ..|++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhh
Confidence 345699999999987666654 231 133444444333321 1 11111111122 12355444 8999988
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
..+=|-|-.+.-.+...+.-...+++|||.++|.+
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 76666554443346678888999999999999998
No 222
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.09 E-value=0.05 Score=48.17 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=59.0
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-----ccHHHHHHcCc-cccccccccCCCC-C---CCcccee
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-----NTLGVIYERGL-IGIYHDWCEGFST-Y---PRTYDLI 147 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-----~~L~~~~~Rgl-~~~~~~~~e~l~~-~---p~sFDlV 147 (235)
.-.++.+||-+|+.+|+....+.+--....-|.++.+| +.+.++.+|-. +.++.|-. .|. | -...|+|
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr--~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR--HPEKYRMLVEMVDVI 147 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT--SGGGGTTTS--EEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC--ChHHhhcccccccEE
Confidence 33456899999999999877776620001237777776 34456777765 33443322 231 2 2688999
Q ss_pred eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
++.-. +....+-++.-+..-||+||.++|.
T Consensus 148 ~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 148 FQDVA-----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 87322 2234456677777899999999998
No 223
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.08 E-value=0.0039 Score=53.07 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=58.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc---cc-cccccCCCC---CCCccceee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG---IY-HDWCEGFST---YPRTYDLIH 148 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~---~~-~~~~e~l~~---~p~sFDlV~ 148 (235)
...+|||+=||+|.++..-..+| +..|+-+|.+ ..+..+.+. ++.. .+ .|....+.- ....||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 46799999999999998777777 4579999998 666654432 3222 11 111112221 248999998
Q ss_pred ehhhhccCCCCCC-hHHHHHHHh--hhhcCCcEEEEEeCh
Q 026623 149 ANGVFSLYENTCK-PEDILLEMD--RILRPEGAVIFRDEV 185 (235)
Q Consensus 149 a~~vl~h~~~~~~-~~~~L~Em~--RVLRPGG~lii~d~~ 185 (235)
+.==+. ... +..+|.-+. .+|+++|.+|+-...
T Consensus 120 lDPPY~----~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 LDPPYA----KGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp E--STT----SCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ECCCcc----cchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 732221 112 256666665 799999999987543
No 224
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.05 E-value=0.03 Score=53.13 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=15.7
Q ss_pred CC-CccceeeehhhhccCC
Q 026623 140 YP-RTYDLIHANGVFSLYE 157 (235)
Q Consensus 140 ~p-~sFDlV~a~~vl~h~~ 157 (235)
|| +|.+++|++..+|.+.
T Consensus 158 fP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cCCCceEEEEeeccceecc
Confidence 45 9999999999999774
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.97 E-value=0.011 Score=55.92 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=63.5
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc--cccccccccCC-CCCCCccceeeehhhhc
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL--IGIYHDWCEGF-STYPRTYDLIHANGVFS 154 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl--~~~~~~~~e~l-~~~p~sFDlV~a~~vl~ 154 (235)
-+|||+-||+|.++...+....-+..|+..|.+ +.++.+.+. ++ +..++..+..+ ....+.||+|...- |.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 489999999999998888751113579999998 777765442 22 12232222222 21236799998744 31
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
....++...-+.+++||++.++
T Consensus 125 ------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ------CcHHHHHHHHHhcccCCEEEEE
Confidence 3358999999999999999998
No 226
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.93 E-value=0.082 Score=49.30 Aligned_cols=140 Identities=14% Similarity=0.209 Sum_probs=72.4
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccc--cccccccCCCC---
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIG--IYHDWCEGFST--- 139 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~--~~~~~~e~l~~--- 139 (235)
|..++..++.... +|||+-||.|.|+..|++.. ..|++++.. +++..|.+ .|+-. .++..++.+..
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA 261 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence 4545555555434 79999999999999999874 468899988 77775543 34321 22222222210
Q ss_pred -------------CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-HHHHHHHHHhccCceeE--
Q 026623 140 -------------YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-ALNKVRKFAEGMRWDTK-- 203 (235)
Q Consensus 140 -------------~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-~~~~i~~~~~~~~W~~~-- 203 (235)
....+|+|+. - |.|..+...+.++ +.++.=.++||=++. ...-++.+.+ .|++.
T Consensus 262 ~~r~~~~~~~~~~~~~~~d~vil----D--PPR~G~~~~~~~~--~~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~~v 331 (352)
T PF05958_consen 262 KAREFNRLKGIDLKSFKFDAVIL----D--PPRAGLDEKVIEL--IKKLKRIVYVSCNPATLARDLKILKE--GYKLEKV 331 (352)
T ss_dssp CS-GGTTGGGS-GGCTTESEEEE---------TT-SCHHHHHH--HHHSSEEEEEES-HHHHHHHHHHHHC--CEEEEEE
T ss_pred hhHHHHhhhhhhhhhcCCCEEEE----c--CCCCCchHHHHHH--HhcCCeEEEEECCHHHHHHHHHHHhh--cCEEEEE
Confidence 0135788764 1 2333333333333 235667888885554 4455555554 47764
Q ss_pred -eecCCCCCCCCceEEEEEec
Q 026623 204 -MMDHEDGPLMPEKILIAVKQ 223 (235)
Q Consensus 204 -~~~~~~~~~~~e~~l~~~k~ 223 (235)
..|.=....+-|.+.+-+|+
T Consensus 332 ~~~DmFP~T~HvE~v~lL~rk 352 (352)
T PF05958_consen 332 QPVDMFPQTHHVETVALLERK 352 (352)
T ss_dssp EEE-SSTTSS--EEEEEEEE-
T ss_pred EEeecCCCCCcEEEEEEEEeC
Confidence 33333344466777666653
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.85 E-value=0.017 Score=46.63 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=33.0
Q ss_pred CCCceEeeeccccchHHHHHhc-----CCCceeEEeecCcc-ccHHHHHHc
Q 026623 80 RRYRNVMDMNAGLGGFAAALES-----PKSWVMNVVPTTAK-NTLGVIYER 124 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~-----~~~~~~~V~~~D~s-~~L~~~~~R 124 (235)
.+...|+|+|||-|.++..|+. .+ ...|+++|.. ..+..+.+|
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~--~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP--NLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC--CCeEEEEECCcHHHHHHHHH
Confidence 4578999999999999998887 43 4579999998 555544443
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.83 E-value=0.022 Score=49.50 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=55.2
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchH--HHHHhcCCCceeEEeecCccccHHHHHH--
Q 026623 48 VEGVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGF--AAALESPKSWVMNVVPTTAKNTLGVIYE-- 123 (235)
Q Consensus 48 ~~g~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~f--aa~L~~~~~~~~~V~~~D~s~~L~~~~~-- 123 (235)
..+++...|-+-.- ..+.. ++..++..+....+|+|||.|.. .++|... +...+|+.+...+..+.+
T Consensus 15 y~~~s~~~YGEi~~---~~~~~---il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~---~~~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 15 YKSFSSETYGEISP---EFVSK---ILDELNLTPDDVFYDLGSGVGNVVFQAALQTG---CKKSVGIEILPELHDLAEEL 85 (205)
T ss_dssp STTTCCCCGGGCHH---HHHHH---HHHHTT--TT-EEEEES-TTSHHHHHHHHHH-----SEEEEEE-SHHHHHHHHHH
T ss_pred cccCCCcceeecCH---HHHHH---HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC---CcEEEEEEechHHHHHHHHH
Confidence 34556666644432 22322 34444445567999999999974 4454432 223567666522221111
Q ss_pred ----------cCc-cccccccccCCCCCC--------CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 124 ----------RGL-IGIYHDWCEGFSTYP--------RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 124 ----------Rgl-~~~~~~~~e~l~~~p--------~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-|. .+.+.-. .-.|.+ ..-|+|++++..- + .++...|.++..-||||-.+|-.
T Consensus 86 ~~~~~~~~~~~g~~~~~v~l~--~gdfl~~~~~~~~~s~AdvVf~Nn~~F---~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 86 LEELKKRMKHYGKRPGKVELI--HGDFLDPDFVKDIWSDADVVFVNNTCF---D-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHHHHHHHCTB---EEEEE--CS-TTTHHHHHHHGHC-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEES
T ss_pred HHHHHHHHHHhhcccccceee--ccCccccHhHhhhhcCCCEEEEecccc---C-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 122 1111000 111222 2358999976542 1 25667778888899988776543
No 229
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.76 E-value=0.0065 Score=55.03 Aligned_cols=127 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cc-cccccCCCCCC-Ccccee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IY-HDWCEGFSTYP-RTYDLI 147 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~-~~~~e~l~~~p-~sFDlV 147 (235)
|...+..+|||++||.|+-+..|++.-.-...+++.|.+ ..+....++ |+.. .. .|..+..+..+ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 455567789999999998766666521102368999998 666654433 4422 22 22112112223 469999
Q ss_pred ee----hh--hhccCC------CCCCh-------HHHHHHHhhhh----cCCcEEEEEeCh----HHHHHHHHHHhcc-C
Q 026623 148 HA----NG--VFSLYE------NTCKP-------EDILLEMDRIL----RPEGAVIFRDEV----DALNKVRKFAEGM-R 199 (235)
Q Consensus 148 ~a----~~--vl~h~~------~~~~~-------~~~L~Em~RVL----RPGG~lii~d~~----~~~~~i~~~~~~~-~ 199 (235)
.. +. ++.+-+ ...++ ..+|....+.| ||||+++-+... +--.-|+.+++.- .
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~ 240 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPD 240 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTS
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCC
Confidence 85 22 233211 11111 17889999999 999999999632 1122345555543 4
Q ss_pred ceeE
Q 026623 200 WDTK 203 (235)
Q Consensus 200 W~~~ 203 (235)
+++.
T Consensus 241 ~~l~ 244 (283)
T PF01189_consen 241 FELV 244 (283)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 4443
No 230
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.72 E-value=0.07 Score=47.85 Aligned_cols=96 Identities=24% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCceEeeeccccc--hHHHHHhcCCCceeEEeecCcc---ccHHHHHHcCc----------cccccccccCCC--CCCCc
Q 026623 81 RYRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK---NTLGVIYERGL----------IGIYHDWCEGFS--TYPRT 143 (235)
Q Consensus 81 ~~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s---~~L~~~~~Rgl----------~~~~~~~~e~l~--~~p~s 143 (235)
...+||.+|+|+| +.++++.. ..+++-.|.+ ..|+...+++. +....+|-+++. +++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~----~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL----GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh----cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 4678999999999 55555543 2467666665 34444433321 223356666554 34444
Q ss_pred -cceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 144 -YDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 144 -FDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
||+|+++.++.+....+.++ .=|.-.|-.+|.+++.-
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv---~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLV---KTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cccEEEEeeeeecCCcchhHH---HHHHHHHhcCCeEEEEE
Confidence 99999999998765444444 44455577777655553
No 231
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.65 E-value=0.0093 Score=50.46 Aligned_cols=44 Identities=11% Similarity=0.330 Sum_probs=35.6
Q ss_pred CCCccceeeehhhhccC-----CCCCC---hHHHHHHHhhhhcCCcEEEEEe
Q 026623 140 YPRTYDLIHANGVFSLY-----ENTCK---PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 140 ~p~sFDlV~a~~vl~h~-----~~~~~---~~~~L~Em~RVLRPGG~lii~d 183 (235)
|.++||.+.|-++++|. -+.-+ -...+.++.|+|||||.+++.-
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 67999999999999885 12222 2588999999999999999994
No 232
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.05 Score=52.39 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=70.5
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccc--cccccccCCCCC--
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIG--IYHDWCEGFSTY-- 140 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~--~~~~~~e~l~~~-- 140 (235)
|...+..++.....+|||+=||.|+|+..|+++ +..|.+++++ +++..+.+ -|+.. ......|.+..-
T Consensus 282 ~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 282 YETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 444555566555679999999999999999965 4578899888 66665433 24322 122333444322
Q ss_pred -CCccceeeehhhhccCCCCCChH-HHHHHHhhhhcCCcEEEEEeChHHH
Q 026623 141 -PRTYDLIHANGVFSLYENTCKPE-DILLEMDRILRPEGAVIFRDEVDAL 188 (235)
Q Consensus 141 -p~sFDlV~a~~vl~h~~~~~~~~-~~L~Em~RVLRPGG~lii~d~~~~~ 188 (235)
...||+|+. - |.|+-+. .++.++.+ ++|-..++||=++..+
T Consensus 359 ~~~~~d~Vvv----D--PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 359 EGYKPDVVVV----D--PPRAGADREVLKQLAK-LKPKRIVYVSCNPATL 401 (432)
T ss_pred ccCCCCEEEE----C--CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHH
Confidence 258899975 1 3444555 55555554 6788899999777654
No 233
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.61 E-value=0.041 Score=48.12 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=66.0
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcC---CCceeEEeecCcc-------ccHH-HHHHcCccc--cccccccCCCC
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESP---KSWVMNVVPTTAK-------NTLG-VIYERGLIG--IYHDWCEGFST 139 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~---~~~~~~V~~~D~s-------~~L~-~~~~Rgl~~--~~~~~~e~l~~ 139 (235)
+|...+-....+|.|+=-|.|.|++-|... ...|.+++|.+.. ..+. ++++.+.-. .+-..--++.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG- 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-
Confidence 343334455789999999999998888763 1246677777762 1122 222222211 1110001233
Q ss_pred CCCccceeeehhhhc--cCC--CCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 140 YPRTYDLIHANGVFS--LYE--NTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 140 ~p~sFDlV~a~~vl~--h~~--~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
.|+-.|++..+..-| |.+ +.....++-.++++.|||||.+.+-|+
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 347777776644443 211 223467999999999999999999974
No 234
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=0.038 Score=48.08 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCc----------cccccccccCCCCCCCccceeeeh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL----------IGIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl----------~~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
+..+|||+||..|....--.++-.-..-|.++|+-. +.--+|. +.++....|.|| .+..|+|.+.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp--~r~VdvVlSD 143 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---IEPPEGATIIQGNDVTDPETYRKIFEALP--NRPVDVVLSD 143 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---ccCCCCcccccccccCCHHHHHHHHHhCC--CCcccEEEec
Confidence 467999999999987654443210122356666621 1111221 111222235554 4888998875
Q ss_pred hhh--------ccCC--CCCChHHHHHHHhhhhcCCcEEEEEe-----ChHHHHHHHHHHhccCceeEeecCCCCCCCCc
Q 026623 151 GVF--------SLYE--NTCKPEDILLEMDRILRPEGAVIFRD-----EVDALNKVRKFAEGMRWDTKMMDHEDGPLMPE 215 (235)
Q Consensus 151 ~vl--------~h~~--~~~~~~~~L~Em~RVLRPGG~lii~d-----~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e 215 (235)
+.= .|+. +-|+ .+|.=.--.|+|+|.|++-- .......+++....++ ..+++.-.+. ..|
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~--s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk--~vKP~Asr~e-S~E 218 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCD--SALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK--KVKPDASRDE-SAE 218 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHH--HHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE--eeCCcccccc-ccc
Confidence 432 1221 1111 22322334567999999972 2333444444433322 1122222111 579
Q ss_pred eEEEEEec
Q 026623 216 KILIAVKQ 223 (235)
Q Consensus 216 ~~l~~~k~ 223 (235)
.+|+|++.
T Consensus 219 ~y~v~~~~ 226 (232)
T KOG4589|consen 219 TYLVCLNF 226 (232)
T ss_pred eeeeeeec
Confidence 99999763
No 235
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.36 E-value=0.066 Score=51.41 Aligned_cols=102 Identities=21% Similarity=0.380 Sum_probs=63.2
Q ss_pred hCCCCCceEeeeccccch---HHHHHhc-CCCceeEEeecCcc-ccHHH----HHHcCccccc---cccccCCC--CCCC
Q 026623 77 IGTRRYRNVMDMNAGLGG---FAAALES-PKSWVMNVVPTTAK-NTLGV----IYERGLIGIY---HDWCEGFS--TYPR 142 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~---faa~L~~-~~~~~~~V~~~D~s-~~L~~----~~~Rgl~~~~---~~~~e~l~--~~p~ 142 (235)
+.+.++.+||||+|..|| +.|+|.+ .| -|.+-|.. +.+.. +.+-|+.+++ +|- ..|| -++.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~-~ef~~~~~~~ 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG-REFPEKEFPG 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCc-ccccccccCc
Confidence 566778999999999996 4444443 44 37788876 55553 3334654433 332 2344 1346
Q ss_pred ccceee----ehh--hhccCCCCCCh-------------HHHHHHHhhhhcCCcEEEEEe
Q 026623 143 TYDLIH----ANG--VFSLYENTCKP-------------EDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 143 sFDlV~----a~~--vl~h~~~~~~~-------------~~~L~Em~RVLRPGG~lii~d 183 (235)
+||-|. |+. |++--+..|-. .++|...--.+||||+++-++
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 999988 566 55432111111 155666667899999999996
No 236
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.27 E-value=0.0059 Score=48.27 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=37.1
Q ss_pred ccceeeehhhhc--cCCC-CCChHHHHHHHhhhhcCCcEEEEEeC--------hHHHHHHHHHHhccCcee
Q 026623 143 TYDLIHANGVFS--LYEN-TCKPEDILLEMDRILRPEGAVIFRDE--------VDALNKVRKFAEGMRWDT 202 (235)
Q Consensus 143 sFDlV~a~~vl~--h~~~-~~~~~~~L~Em~RVLRPGG~lii~d~--------~~~~~~i~~~~~~~~W~~ 202 (235)
.||+|.|-+|-- |+.. ++.+..++..|.+.|||||.||+--. ....+.+...+++++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 489999966654 4421 12477999999999999999999842 112455666677777653
No 237
>PRK11524 putative methyltransferase; Provisional
Probab=95.24 E-value=0.056 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhcCCcEEEEEeChHH
Q 026623 163 EDILLEMDRILRPEGAVIFRDEVDA 187 (235)
Q Consensus 163 ~~~L~Em~RVLRPGG~lii~d~~~~ 187 (235)
..+|.|+.|+|||||.+++.-....
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~~~~~ 84 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMNSTEN 84 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCchh
Confidence 5799999999999999998755443
No 238
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.033 Score=47.47 Aligned_cols=121 Identities=17% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc----ccHHHHHHcCcccc--------ccccccCCCCCCCccceee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK----NTLGVIYERGLIGI--------YHDWCEGFSTYPRTYDLIH 148 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s----~~L~~~~~Rgl~~~--------~~~~~e~l~~~p~sFDlV~ 148 (235)
+.++||.+|.|.=+++--|....+-.-.|--.|.. ..++.+..+..... .+.|-....-..++||+|.
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 46899999999988888777643333344444543 34444443321010 1111111221337999999
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHHHHhccCceeEe
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~~~~~~~W~~~~ 204 (235)
|++-+-.- +--+.++.-|.+.|||.|..++.-+. +.+.+..+.+...-..+..
T Consensus 109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 85544211 12358888999999999998887543 3455555555555554443
No 239
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.00 E-value=0.067 Score=47.50 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=68.4
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc------cccccccccCCCCCC-Cccceeeehh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL------IGIYHDWCEGFSTYP-RTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl------~~~~~~~~e~l~~~p-~sFDlV~a~~ 151 (235)
.++++||.+|=|-|-...++.+++.-. .. -+... +.++..++-|- +...--|-..+++.| +.||-|.-..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~-H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDE-HW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcc-eE-EEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence 457899999999999888888875422 22 23334 66666655542 222344555677766 8999998543
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.=.|+ +++-.+-+-+-|.|||||.+-...
T Consensus 178 y~e~y---Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 178 YSELY---EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhhHH---HHHHHHHHHHhhhcCCCceEEEec
Confidence 33454 367788889999999999998875
No 240
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.1 Score=44.91 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=63.6
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---ccccccccc-CCCCCC--Cccceee
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCE-GFSTYP--RTYDLIH 148 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e-~l~~~p--~sFDlV~ 148 (235)
..+.++||+=||+|.++..=..++. ..++-+|.+ ....++.+. ++ ...++..+. .|+... +.||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 3567999999999999988888874 468888887 666655443 21 222222222 223233 3599999
Q ss_pred ehhhhccCCCCCCh--HHHHH--HHhhhhcCCcEEEEEeChH
Q 026623 149 ANGVFSLYENTCKP--EDILL--EMDRILRPEGAVIFRDEVD 186 (235)
Q Consensus 149 a~~vl~h~~~~~~~--~~~L~--Em~RVLRPGG~lii~d~~~ 186 (235)
..==++ ..-+ +..+. +-...|+|+|.+++-...+
T Consensus 120 lDPPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LDPPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eCCCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 744333 1122 23333 3568899999999986554
No 241
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.077 Score=44.55 Aligned_cols=111 Identities=15% Similarity=0.213 Sum_probs=62.6
Q ss_pred ccccccchHHHHHHHHHHHHHhh-hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCc----
Q 026623 53 GKSYQEDSKLWKKHVNAYKKMNS-LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGL---- 126 (235)
Q Consensus 53 ~~~f~~d~~~W~~~v~~y~~~l~-~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl---- 126 (235)
-|.|....+. +..+..++. -.+.-.+..++|+|||.|-+..+....+ .-.|+|+|+. +.|++......
T Consensus 23 LEQY~T~p~i----AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 23 LEQYPTRPHI----AASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred hhhCCCcHHH----HHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhhh
Confidence 3456666554 233333332 3565567899999999998764444332 2369999998 88886433211
Q ss_pred -cccccccccCCC--CCCCccceeeehhhhccCCCCCChH--HHHHHHhh
Q 026623 127 -IGIYHDWCEGFS--TYPRTYDLIHANGVFSLYENTCKPE--DILLEMDR 171 (235)
Q Consensus 127 -~~~~~~~~e~l~--~~p~sFDlV~a~~vl~h~~~~~~~~--~~L~Em~R 171 (235)
+..+. |.-+. +-.+.||.++.+-=|---.+..|++ ++-.||.|
T Consensus 97 qidlLq--cdildle~~~g~fDtaviNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 97 QIDLLQ--CDILDLELKGGIFDTAVINPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred hhheee--eeccchhccCCeEeeEEecCCCCcccccccHHHHHHHHHHHH
Confidence 11111 22122 1228999999887775322223443 44445554
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.92 E-value=0.083 Score=46.15 Aligned_cols=97 Identities=26% Similarity=0.280 Sum_probs=59.2
Q ss_pred CCCCceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCc-cccccccccCCCCCCCccceeeeh
Q 026623 79 TRRYRNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGV----IYERGL-IGIYHDWCEGFSTYPRTYDLIHAN 150 (235)
Q Consensus 79 ~~~~r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl-~~~~~~~~e~l~~~p~sFDlV~a~ 150 (235)
..+.++|||+|+|.|- .++++.- ...|+..|.. ...+. +...|. +...|..+ -..|..||+|.++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG----A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~Lag 149 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG----AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAG 149 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh----hHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEee
Confidence 3467899999999994 4555442 2245555655 22222 222332 34445322 2256999999999
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
.+|.. +..-..++.=.+|+...|-.+++-|..
T Consensus 150 Dlfy~---~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 150 DLFYN---HTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ceecC---chHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 99962 233456777556666667777777754
No 243
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.80 E-value=0.077 Score=47.16 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=58.9
Q ss_pred CCCCCceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCc---cccccc-cccCCC----CCC-
Q 026623 78 GTRRYRNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGV----IYERGL---IGIYHD-WCEGFS----TYP- 141 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl---~~~~~~-~~e~l~----~~p- 141 (235)
...+.++.||+|.=||. ++.+|+=-. ...|+.+|.. +.... ....|. +...+. -||.|+ -.+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~--dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPE--DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCC--CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 33346799999976664 444443211 2357888876 44443 333343 222222 123332 234
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+|||+++. -|.+ .+-.....+.-|.|||||.+++..
T Consensus 148 ~tfDfaFv----DadK--~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFV----DADK--DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CceeEEEE----ccch--HHHHHHHHHHHhhcccccEEEEec
Confidence 99999985 3332 244588999999999999999984
No 244
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.57 E-value=0.16 Score=44.99 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=56.8
Q ss_pred CCceEeeeccc-cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC----C-CCCCCccceeeehhhh
Q 026623 81 RYRNVMDMNAG-LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG----F-STYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~----l-~~~p~sFDlV~a~~vl 153 (235)
...+||..||| .|.++..++.... .+|+.++.+ +.++.+.+.|....+...... + ....+.+|+|+...
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~-- 240 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV-- 240 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC--
Confidence 35688888876 4777777776421 246777766 777777666752222111010 1 11236789886411
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.....+.++.|.|+|+|.++..
T Consensus 241 -------g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 -------GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1246899999999999999976
No 245
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.40 E-value=0.15 Score=51.89 Aligned_cols=79 Identities=8% Similarity=0.014 Sum_probs=44.1
Q ss_pred EEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCC-C-Cccceeeehhhhc-cCCCCCChHHHHHHHhhhh---
Q 026623 108 NVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTY-P-RTYDLIHANGVFS-LYENTCKPEDILLEMDRIL--- 173 (235)
Q Consensus 108 ~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~-p-~sFDlV~a~~vl~-h~~~~~~~~~~L~Em~RVL--- 173 (235)
.++++|.+ .++..+.+. |+. ...+..+..++.. + ++||+|++|-=+- .+.+..++..+..++.+.|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 58999998 888865543 552 2333333344432 2 6899999963321 1112123344444444444
Q ss_pred cCCcEEEEEeChH
Q 026623 174 RPEGAVIFRDEVD 186 (235)
Q Consensus 174 RPGG~lii~d~~~ 186 (235)
.||+.+++-....
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4998887765543
No 246
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.094 Score=47.32 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=45.0
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC----ccccccccccCCCCCCC--ccceeee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG----LIGIYHDWCEGFSTYPR--TYDLIHA 149 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg----l~~~~~~~~e~l~~~p~--sFDlV~a 149 (235)
++..+..+||.+|+|.|.++..|.++.. .|+++.+- .+.+...++- -+..++.++-.+. +++ .++.|++
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~~~~vVa 101 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQPYKVVA 101 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcCCCEEEE
Confidence 3334467999999999999999999853 47777776 5555544442 2334444333333 233 6788887
Q ss_pred h
Q 026623 150 N 150 (235)
Q Consensus 150 ~ 150 (235)
|
T Consensus 102 N 102 (259)
T COG0030 102 N 102 (259)
T ss_pred c
Confidence 4
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=94.17 E-value=0.058 Score=48.01 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=57.1
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCCCC---Cccceee
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFSTYP---RTYDLIH 148 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~~p---~sFDlV~ 148 (235)
++......|||+|+|+|.++.+|.+.+ .+++.++.. ...+...++ +-+..++.+.-.+.++. +...+|+
T Consensus 26 ~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv 102 (262)
T PF00398_consen 26 LDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVV 102 (262)
T ss_dssp HTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEE
T ss_pred cCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEE
Confidence 343357899999999999999999875 468888887 565655553 22334443333344333 3455676
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcC---CcEEEEEe
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRP---EGAVIFRD 183 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRP---GG~lii~d 183 (235)
+|-=+ ++ -..++..+-+.-+. ..++++..
T Consensus 103 ~NlPy-~i-----s~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 103 GNLPY-NI-----SSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp EEETG-TG-----HHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred EEecc-cc-----hHHHHHHHhhcccccccceEEEEeh
Confidence 65433 22 13555555553333 35555553
No 248
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.91 E-value=0.14 Score=47.61 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=35.1
Q ss_pred CCceEeeeccccchHHHHHhc---------------CCCceeEEeecCcc-ccHHHHHHc-----------------Ccc
Q 026623 81 RYRNVMDMNAGLGGFAAALES---------------PKSWVMNVVPTTAK-NTLGVIYER-----------------GLI 127 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~---------------~~~~~~~V~~~D~s-~~L~~~~~R-----------------gl~ 127 (235)
..-+|.|+||..|.-+..+.+ .+.-...|.--|.+ +--...+.. |++
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 456999999999975433321 11123567777776 433322221 223
Q ss_pred ccccccccCCCCCC-CccceeeehhhhccCC
Q 026623 128 GIYHDWCEGFSTYP-RTYDLIHANGVFSLYE 157 (235)
Q Consensus 128 ~~~~~~~e~l~~~p-~sFDlV~a~~vl~h~~ 157 (235)
|.+++ + .+| +|.|++|++..||++.
T Consensus 96 gSFy~---r--LfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 96 GSFYG---R--LFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp S-TTS-------S-TT-EEEEEEES-TTB-S
T ss_pred chhhh---c--cCCCCceEEEEEechhhhcc
Confidence 33331 1 245 9999999999999764
No 249
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.11 Score=50.52 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=63.9
Q ss_pred CCceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHHHHH--cC--ccc-------cccccccCCCCCC-Cccc
Q 026623 81 RYRNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGVIYE--RG--LIG-------IYHDWCEGFSTYP-RTYD 145 (235)
Q Consensus 81 ~~r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~~~~--Rg--l~~-------~~~~~~e~l~~~p-~sFD 145 (235)
..+.++|+|-|.|. .++.+.-.. ....++-+|-+ .|+..+.. |+ -++ ..|+ ..+|--. +.||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r--~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR--QRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc--ccCCCCccccee
Confidence 44668999888774 333333221 12346778888 77764322 22 011 1121 2345334 6799
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhh-hhcCCcEEEEEeC
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDR-ILRPEGAVIFRDE 184 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~R-VLRPGG~lii~d~ 184 (235)
+|+|++.++++.+...-.++..+..| ..||||++++-+.
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 99999999998766655677777765 6899999999863
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.32 E-value=1.9 Score=38.01 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=78.3
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-----ccHHHHHHcCc-cccccccccCCCC-C---CCcccee
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-----NTLGVIYERGL-IGIYHDWCEGFST-Y---PRTYDLI 147 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-----~~L~~~~~Rgl-~~~~~~~~e~l~~-~---p~sFDlV 147 (235)
.-..+.+||=+|+.+|+....+.+--. ..-+.++.+| +.|.++.+|-. +..+-| + .+|- | =...|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D-A-~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILED-A-RKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecc-c-CCcHHhhhhcccccEE
Confidence 345578999999999998888876310 1125566655 45557777764 334322 1 2331 2 2567887
Q ss_pred eehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE----------eChHHHH-HHHHHHhccCceeEe-ecCCCCCCCCc
Q 026623 148 HANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR----------DEVDALN-KVRKFAEGMRWDTKM-MDHEDGPLMPE 215 (235)
Q Consensus 148 ~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~----------d~~~~~~-~i~~~~~~~~W~~~~-~~~~~~~~~~e 215 (235)
++ -+.++...+-+..-++.-||+||++++. |..++.. +++++ +.-..++.- .+. .|.+++
T Consensus 150 y~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL-~~~~f~i~e~~~L--ePye~D 221 (231)
T COG1889 150 YQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKL-EEGGFEILEVVDL--EPYEKD 221 (231)
T ss_pred EE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHH-HhcCceeeEEecc--CCcccc
Confidence 65 2223334556777789999999988877 2333333 44444 444455542 222 244566
Q ss_pred eEEEEEe
Q 026623 216 KILIAVK 222 (235)
Q Consensus 216 ~~l~~~k 222 (235)
-++|.-|
T Consensus 222 H~~i~~~ 228 (231)
T COG1889 222 HALIVAK 228 (231)
T ss_pred eEEEEEe
Confidence 6666554
No 251
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.10 E-value=0.31 Score=45.40 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=46.2
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--------eC--------hH-HHHHHHHHHhccCceeEe
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--------DE--------VD-ALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--------d~--------~~-~~~~i~~~~~~~~W~~~~ 204 (235)
++||+|+..+.+. .-.++-+.|.-|..+|||||..|=. |. .+ ..+.+.++++.+.|++..
T Consensus 258 ~~~d~VvTcfFID---Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFID---TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEee---chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 4799999876553 2236889999999999999987744 31 12 267789999999999875
Q ss_pred e
Q 026623 205 M 205 (235)
Q Consensus 205 ~ 205 (235)
.
T Consensus 335 e 335 (369)
T KOG2798|consen 335 E 335 (369)
T ss_pred e
Confidence 4
No 252
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.02 E-value=0.033 Score=49.80 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=76.0
Q ss_pred CceEeeeccccchHHHHHhcC------CCcee--EEeecCccccHHHHHHcCcccccccc------ccCCCCCC-Cccce
Q 026623 82 YRNVMDMNAGLGGFAAALESP------KSWVM--NVVPTTAKNTLGVIYERGLIGIYHDW------CEGFSTYP-RTYDL 146 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~------~~~~~--~V~~~D~s~~L~~~~~Rgl~~~~~~~------~e~l~~~p-~sFDl 146 (235)
..+|.|+++..|+....|.++ +--.. -++++|+..|.++ +|++...-|. -.-+..|. .--|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 789999999999987776542 10011 2888888766553 2322111110 01123355 58899
Q ss_pred eeehhh-----hccC---CCCCChHHHHHHHhhhhcCCcEEEEE-----eChHHHHHHHHHHhccCceeEeecCCCCCCC
Q 026623 147 IHANGV-----FSLY---ENTCKPEDILLEMDRILRPEGAVIFR-----DEVDALNKVRKFAEGMRWDTKMMDHEDGPLM 213 (235)
Q Consensus 147 V~a~~v-----l~h~---~~~~~~~~~L~Em~RVLRPGG~lii~-----d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~ 213 (235)
|+|... +|-+ .+-.-+..+|.=.-+||||||.|+-- +..-.-..++.+.++++= .++.+..++ .
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~~--~KPrsSR~s-S 195 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVTC--AKPRSSRNS-S 195 (294)
T ss_pred EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhceee--ecCCccccc-c
Confidence 998554 2211 01122346777788999999999864 222233456666666542 233333333 4
Q ss_pred CceEEEEE
Q 026623 214 PEKILIAV 221 (235)
Q Consensus 214 ~e~~l~~~ 221 (235)
-|-+++|+
T Consensus 196 iEaFvvC~ 203 (294)
T KOG1099|consen 196 IEAFVVCL 203 (294)
T ss_pred ceeeeeec
Confidence 67888885
No 253
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=92.88 E-value=0.11 Score=41.06 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=28.7
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE 123 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~ 123 (235)
.|||+|||.|.++..++.... ...+.+++.. .+.+.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHH
Confidence 489999999999988887542 1268888887 66654433
No 254
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=92.77 E-value=0.4 Score=44.94 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
+..||||=||.|.|+..++.++. ..|+++|+. .......+. ++ +..++.+|..+...-+.||-|+.+..-
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 67899999999999999988764 238999997 655543332 33 334455566566344899999875443
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH-------HHHHHHHHHhccC
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRDEVD-------ALNKVRKFAEGMR 199 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~-------~~~~i~~~~~~~~ 199 (235)
+-..++-..-+.||+||.+-.-+..+ ....+++...++.
T Consensus 267 -------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~ 312 (341)
T COG2520 267 -------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGG 312 (341)
T ss_pred -------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhcc
Confidence 22467778888999999988775321 3456677666553
No 255
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.57 E-value=1.2 Score=38.63 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=78.3
Q ss_pred EeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHH----HHcCccccccc-cccCCCCC-C-CccceeeehhhhccC
Q 026623 85 VMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVI----YERGLIGIYHD-WCEGFSTY-P-RTYDLIHANGVFSLY 156 (235)
Q Consensus 85 VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~----~~Rgl~~~~~~-~~e~l~~~-p-~sFDlV~a~~vl~h~ 156 (235)
|.|+||--|.+..+|.+.+. +..++++|++ .-|+.+ ...|+...+.- .+..|... + +..|.|+.+.+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--
Confidence 68999999999999999874 5578899997 555543 33465432211 12224322 3 3367776543322
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEecc
Q 026623 157 ENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQY 224 (235)
Q Consensus 157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~~ 224 (235)
.-+.++|.+....++..-.||+.-... ...+++.+....|.+..-+.-.....--.|+.+.++-
T Consensus 78 ---~lI~~ILe~~~~~~~~~~~lILqP~~~-~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~ 141 (205)
T PF04816_consen 78 ---ELIIEILEAGPEKLSSAKRLILQPNTH-AYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGE 141 (205)
T ss_dssp ---HHHHHHHHHTGGGGTT--EEEEEESS--HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred ---HHHHHHHHhhHHHhccCCeEEEeCCCC-hHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCC
Confidence 135688998989998888899987653 4578899999999876322211111233456665543
No 256
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.45 E-value=0.043 Score=41.49 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=33.4
Q ss_pred eeeccccchHHHHHhcC--CCceeEEeecCccc---cHH-HHHHcCccccc---cccc-cCCCCCC-Cccceeeehhhhc
Q 026623 86 MDMNAGLGGFAAALESP--KSWVMNVVPTTAKN---TLG-VIYERGLIGIY---HDWC-EGFSTYP-RTYDLIHANGVFS 154 (235)
Q Consensus 86 LD~GCG~G~faa~L~~~--~~~~~~V~~~D~s~---~L~-~~~~Rgl~~~~---~~~~-e~l~~~p-~sFDlV~a~~vl~ 154 (235)
|.+|+..|..+..|.+. ..-...++.+|... ..+ .+.+.++...+ .... +.++.++ +.||+++...-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 57898899877666642 10012466777653 222 33333442222 1111 1233344 89999997431
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|- .......+..+.+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 0134577888889999999999865
No 257
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.45 E-value=1.7 Score=39.53 Aligned_cols=138 Identities=13% Similarity=0.154 Sum_probs=63.5
Q ss_pred CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH-----cCcc---ccccccccCCCCCC-Cccceeeeh
Q 026623 82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE-----RGLI---GIYHDWCEGFSTYP-RTYDLIHAN 150 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~-----Rgl~---~~~~~~~e~l~~~p-~sFDlV~a~ 150 (235)
.++|+=+|||.=-+++-+..+ -.-...|.++|.. +..+.+.+ -||- ..........+ .+ ..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEh
Confidence 359999999987776655542 1113467888887 55554321 2331 11221122223 45 899999876
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeChH---HHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEVD---ALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ 223 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~---~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~ 223 (235)
....- +..+=+++|..+.+.++||..+++|.... ++...-....--.|++-...++.+. .-+-+++++|.
T Consensus 200 alVg~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~-ViNSvv~~rk~ 272 (276)
T PF03059_consen 200 ALVGM--DAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDE-VINSVVFARKK 272 (276)
T ss_dssp TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT----EEEEE---
T ss_pred hhccc--ccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCC-ceeEEEEEEec
Confidence 66642 23456799999999999999999996432 1111111111126777655565444 56778999885
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.39 E-value=0.51 Score=38.82 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred EeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCC-C-CccceeeehhhhccCCCC--------CChHHHHHHHh
Q 026623 109 VVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTY-P-RTYDLIHANGVFSLYENT--------CKPEDILLEMD 170 (235)
Q Consensus 109 V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~-p-~sFDlV~a~~vl~h~~~~--------~~~~~~L~Em~ 170 (235)
|.++|+- ..+....+| |+. ..+++.=|.+.-| + +.+|+++-|.. ++|.. ..-..+|....
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHHH
Confidence 6778886 666644443 332 2222222445433 3 48999886544 34421 11238999999
Q ss_pred hhhcCCcEEEEEe------ChHHHHHHHHHHhcc---CceeEeecCCCCCCCCceEEEEEe
Q 026623 171 RILRPEGAVIFRD------EVDALNKVRKFAEGM---RWDTKMMDHEDGPLMPEKILIAVK 222 (235)
Q Consensus 171 RVLRPGG~lii~d------~~~~~~~i~~~~~~~---~W~~~~~~~~~~~~~~e~~l~~~k 222 (235)
++|+|||.++|.- ..+..+.+.++++++ .|.|..+...+-.+....+++.+|
T Consensus 80 ~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 9999999999984 123455666776654 678887777766666677777765
No 259
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.36 E-value=0.39 Score=44.99 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=62.6
Q ss_pred CCCceEeeeccc-cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccc-ccCCCCCCCccceeeehhhhccC
Q 026623 80 RRYRNVMDMNAG-LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW-CEGFSTYPRTYDLIHANGVFSLY 156 (235)
Q Consensus 80 ~~~r~VLD~GCG-~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~-~e~l~~~p~sFDlV~a~~vl~h~ 156 (235)
.+...|+=+|+| .|.++..+++.- .++|+.+|.+ +.++.+.+-|....+... -+.+.-..+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv----- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV----- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-----
Confidence 345677777776 446777777632 2689999999 889998888764443211 111121224599998522
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 157 ENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
. ...+...-+.||+||.+++-=..
T Consensus 238 ----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 ----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788888999999999998433
No 260
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.93 E-value=1 Score=41.70 Aligned_cols=101 Identities=18% Similarity=0.046 Sum_probs=60.6
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc---c--ccccCC-CC-CCCccceeeeh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY---H--DWCEGF-ST-YPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~---~--~~~e~l-~~-~p~sFDlV~a~ 150 (235)
...+||..|||. |.++..+++. +. ..++.++.+ ++++.+.+.+-...+ . ++.+.+ .. ..+.+|+|+-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~--~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGA--ERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 456899999987 7777777664 32 247777777 788888777311111 1 011111 11 22478988753
Q ss_pred hh-------hccC-----CCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 151 GV-------FSLY-----ENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 151 ~v-------l~h~-----~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.. ++++ ....+....+.++.|.|+|+|.+++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 21 1111 001123578999999999999999864
No 261
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.43 E-value=0.59 Score=42.87 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC--cc-----ccccccccCCCCCCCccceeeehh
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG--LI-----GIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg--l~-----~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
.+...||.+|-|||.++..|.+.+ ..|+++..- .|.....+|+ .. .++| |+.|.+..-.||+++++.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~--gD~lK~d~P~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH--GDFLKTDLPRFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEe--cccccCCCcccceeeccC
Confidence 446789999999999999999986 358888887 7777776764 22 1223 344554446788888732
Q ss_pred --------hhccCC----CCCChHHHHHHH--hhhhcCCcEEEEEeCh--HHHHHHHHHHh
Q 026623 152 --------VFSLYE----NTCKPEDILLEM--DRILRPEGAVIFRDEV--DALNKVRKFAE 196 (235)
Q Consensus 152 --------vl~h~~----~~~~~~~~L~Em--~RVLRPGG~lii~d~~--~~~~~i~~~~~ 196 (235)
||-.+. -+|.+..+-+|. .-+-|||-.++++-+. +++..++-+.+
T Consensus 132 PyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~i~K 192 (315)
T KOG0820|consen 132 PYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTHIMK 192 (315)
T ss_pred CccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchhhee
Confidence 232221 234432222332 2266888888887543 44555554443
No 262
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.80 E-value=0.28 Score=41.01 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred hHHHHHHHhhhhcCCcEEEEE
Q 026623 162 PEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~ 182 (235)
+...+.|+.|||||||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 468999999999999999988
No 263
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=89.38 E-value=0.39 Score=47.23 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=44.2
Q ss_pred cccccccccchHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH
Q 026623 50 GVTGKSYQEDSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE 123 (235)
Q Consensus 50 g~~~~~f~~d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~ 123 (235)
.+|+.+|=..+.. ..-.-|..+-+..+-.....+||+.||||.|+.+|++. +..|.|+..+ +.+..|..
T Consensus 354 ~iSp~AFFQ~Nt~--~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 354 RISPGAFFQTNTS--AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEK 423 (534)
T ss_pred EECCchhhccCcH--HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhh
Confidence 4566655444442 11223554444444444578999999999999999875 3457788777 66665543
No 264
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=89.33 E-value=3.2 Score=37.26 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=39.9
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccc-cccccccCCCCC--CCccceeeehh
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIG-IYHDWCEGFSTY--PRTYDLIHANG 151 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~-~~~~~~e~l~~~--p~sFDlV~a~~ 151 (235)
+|+|+-||.|++...|...+. -.+.++|.. ..++ .+++-... .++...+.+... ...+|+++++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~-~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAE-TYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHH-HHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999888887763 347788887 4443 33332221 122222333221 35699999854
No 265
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=88.67 E-value=4.3 Score=37.36 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=71.6
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHH-----HHHHcCcc---cc-ccccccC-CCCCCCccc
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLG-----VIYERGLI---GI-YHDWCEG-FSTYPRTYD 145 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~-----~~~~Rgl~---~~-~~~~~e~-l~~~p~sFD 145 (235)
.|.-.++..|+..|.|.|++.-+++..=.-...+.-+|+.++.. --.+.|+. .. ..|.|.. |.-....+|
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence 34445678999999999999888876311134677788763332 23334542 22 2444542 222247888
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE--eChHHHHHHHHHHhccCcee
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR--DEVDALNKVRKFAEGMRWDT 202 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~--d~~~~~~~i~~~~~~~~W~~ 202 (235)
.|+. |-..+-.++--.+.+||-+|.-+++ -..+.+++--..+.+..|.-
T Consensus 180 aVFL--------DlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 180 AVFL--------DLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIE 230 (314)
T ss_pred eEEE--------cCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCce
Confidence 8875 3234445666666799988754444 33455555556677888853
No 266
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.08 E-value=3.5 Score=39.08 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=72.1
Q ss_pred hCCCCCceEeeeccccchHHHHHhcC--CCce-eEEeecCcc----ccHHHHHHcCc----cccccccccCCCC------
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESP--KSWV-MNVVPTTAK----NTLGVIYERGL----IGIYHDWCEGFST------ 139 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~--~~~~-~~V~~~D~s----~~L~~~~~Rgl----~~~~~~~~e~l~~------ 139 (235)
|+-.+..+||||++..|+=+++|.+. ..|. ..|++=|.. ++|.-...|-. ..+-|+ ...+|-
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~-~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHD-ASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeeccc-ceeccccccccC
Confidence 45556789999999999988777652 1111 146665654 45544444421 111121 111221
Q ss_pred --CC-Cccceeeehhhhcc---CCCCCCh-----------------HHHHHHHhhhhcCCcEEEEEe-------ChHH-H
Q 026623 140 --YP-RTYDLIHANGVFSL---YENTCKP-----------------EDILLEMDRILRPEGAVIFRD-------EVDA-L 188 (235)
Q Consensus 140 --~p-~sFDlV~a~~vl~h---~~~~~~~-----------------~~~L~Em~RVLRPGG~lii~d-------~~~~-~ 188 (235)
+. ..||-|.|.-=.++ +++..++ ..+|.---|.|||||.++-|+ +..+ -
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~ 309 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQ 309 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHH
Confidence 12 57888876322221 0100011 267778889999999999995 2223 3
Q ss_pred HHHHHHHhccCceeEee
Q 026623 189 NKVRKFAEGMRWDTKMM 205 (235)
Q Consensus 189 ~~i~~~~~~~~W~~~~~ 205 (235)
..++++...+.|.....
T Consensus 310 ~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 310 EALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHHhcCcccceeecc
Confidence 45666677888876643
No 267
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=87.31 E-value=0.6 Score=39.29 Aligned_cols=89 Identities=21% Similarity=0.351 Sum_probs=46.5
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cc---cccccc-cccCCCCCC--Cccceeeeh-
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GL---IGIYHD-WCEGFSTYP--RTYDLIHAN- 150 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl---~~~~~~-~~e~l~~~p--~sFDlV~a~- 150 (235)
+.|+|+.||.||-+.+++... -.|+++|.. ..+..+..- |. +..++. +.+.++... ..||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999998864 368999998 666654332 32 222222 222223222 238999963
Q ss_pred --h--------hhcc--CCCCCChHHHHHHHhhhhc
Q 026623 151 --G--------VFSL--YENTCKPEDILLEMDRILR 174 (235)
Q Consensus 151 --~--------vl~h--~~~~~~~~~~L~Em~RVLR 174 (235)
. +|.- .....++.+++..+.++-+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~ 113 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITP 113 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCC
Confidence 1 2221 1122346677777666653
No 268
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.08 E-value=0.55 Score=44.53 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=37.4
Q ss_pred CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+++||.++.++.+.... .+.....+.++.|.+||||.++++.
T Consensus 293 ~~s~~~~vL~D~~Dwm~-~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWMD-PEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCeeEEEecchhhhCC-HHHHHHHHHHHHHHhCCCCEEEEee
Confidence 69999999999998774 3667899999999999999999996
No 269
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.34 E-value=4.3 Score=36.80 Aligned_cols=89 Identities=11% Similarity=-0.028 Sum_probs=53.4
Q ss_pred CCCceEeeeccccc-hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC
Q 026623 80 RRYRNVMDMNAGLG-GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 80 ~~~r~VLD~GCG~G-~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
....+||=.|||.- .++..+++.. ..+|+.++.+ +.++.+.+-|.-..+. .+ ....+.||+++-..
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~--~~--~~~~~~~d~~i~~~------ 231 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGG--AY--DTPPEPLDAAILFA------ 231 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceecc--cc--ccCcccceEEEECC------
Confidence 34678998997643 3445555432 1357777776 7778888877532221 01 11124688764211
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 158 NTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 158 ~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.....+.+.-+.|||||.+++.-
T Consensus 232 ---~~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 232 ---PAGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ---CcHHHHHHHHHhhCCCcEEEEEe
Confidence 11357888999999999998853
No 270
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.85 E-value=4.9 Score=38.27 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=68.1
Q ss_pred hCCCCCceEeeeccccchHHHHHhcCCC---------c----------------------ee-------EEeecCcc-cc
Q 026623 77 IGTRRYRNVMDMNAGLGGFAAALESPKS---------W----------------------VM-------NVVPTTAK-NT 117 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G~faa~L~~~~~---------~----------------------~~-------~V~~~D~s-~~ 117 (235)
-++.....++|==||+|+|+..-+-... | .. .+.++|+. .+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 3666667899999999998543322110 0 00 26699998 88
Q ss_pred HHHHHHc----Cc---cccccccccCCCCCCCccceeeehhhhc-cCCCCCChH----HHHHHHhhhhcCCcEEEEEeCh
Q 026623 118 LGVIYER----GL---IGIYHDWCEGFSTYPRTYDLIHANGVFS-LYENTCKPE----DILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 118 L~~~~~R----gl---~~~~~~~~e~l~~~p~sFDlV~a~~vl~-h~~~~~~~~----~~L~Em~RVLRPGG~lii~d~~ 185 (235)
++.|+.. |+ |.........|+...+.+|+|+||-=-- .+.+...+. .+..+|.|.++--+.+|++.+.
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 8876553 54 3333433445553338999999853211 121222233 4556777888888889998876
Q ss_pred HHH
Q 026623 186 DAL 188 (235)
Q Consensus 186 ~~~ 188 (235)
...
T Consensus 347 ~~~ 349 (381)
T COG0116 347 DLL 349 (381)
T ss_pred HHH
Confidence 644
No 271
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=85.03 E-value=1.2 Score=34.22 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=54.6
Q ss_pred ccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccccc----CC-CCCC-CccceeeehhhhccCCCCCChH
Q 026623 91 GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE----GF-STYP-RTYDLIHANGVFSLYENTCKPE 163 (235)
Q Consensus 91 G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e----~l-~~~p-~sFDlV~a~~vl~h~~~~~~~~ 163 (235)
|.|.++..+++.-. .+|+.+|.+ ..++.+.+-|....+....+ .+ ...+ +.+|+|+=. -.-.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~---------~g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC---------VGSG 69 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES---------SSSH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe---------cCcH
Confidence 56778777776432 578888888 78888888884322211111 11 1123 589998631 1226
Q ss_pred HHHHHHhhhhcCCcEEEEEe
Q 026623 164 DILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 164 ~~L~Em~RVLRPGG~lii~d 183 (235)
..+.+.-.+|||||.+++--
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEES
T ss_pred HHHHHHHHHhccCCEEEEEE
Confidence 89999999999999999984
No 272
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.59 E-value=6.8 Score=35.56 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=52.3
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCc---c-ccHHHHHHcCccccccccc-cCC--CCCCCccceeeehh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTA---K-NTLGVIYERGLIGIYHDWC-EGF--STYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~---s-~~L~~~~~Rgl~~~~~~~~-e~l--~~~p~sFDlV~a~~ 151 (235)
...+||=+|||. |.++..+++. +. .|+.++. + ..++.+.+.|.... +.- +.+ ....+.||+|+-..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~---~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF---EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECc
Confidence 356888888864 4466666553 42 4666654 4 66677777665321 111 110 00124688876411
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.+..++|||||.+++.
T Consensus 247 ---------g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 247 ---------GVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred ---------CCHHHHHHHHHHccCCcEEEEE
Confidence 1135788999999999999875
No 273
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.01 E-value=4.3 Score=36.01 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=53.5
Q ss_pred CCCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-CCCCccceeeehhhhcc
Q 026623 80 RRYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-TYPRTYDLIHANGVFSL 155 (235)
Q Consensus 80 ~~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-~~p~sFDlV~a~~vl~h 155 (235)
....+||-.||| .|..+..+++. +. +|+.++.+ +.++.+.+.|....+....+.+. ...+.+|+++.. +
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~-~--- 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGF---ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVT-V--- 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEEC-C---
Confidence 345688888886 66666666554 43 46666656 66777666663211111001110 012468888641 1
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.|.|+++|.++..
T Consensus 234 -----~~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 234 -----VSGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred -----CcHHHHHHHHHhcccCCEEEEE
Confidence 1135788999999999999876
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.98 E-value=3.4 Score=38.21 Aligned_cols=90 Identities=21% Similarity=0.133 Sum_probs=57.6
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC-----C-C-CCCCccceeeehhhhcc
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG-----F-S-TYPRTYDLIHANGVFSL 155 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~-----l-~-~~p~sFDlV~a~~vl~h 155 (235)
+|+=+|||+=|+.+.+..+-.-...|+.+|.+ +.|+.|.+.+-.....+.-+. . . +..+.||+++=...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G--- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG--- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC---
Confidence 89999999866554333321113568888998 899998885532221111110 0 1 11246998873211
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
...++.++-+.+||||.+++-
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEE
Confidence 356899999999999999987
No 275
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.84 E-value=5 Score=33.80 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC-----CCCCCccceeeehhh
Q 026623 80 RRYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-----STYPRTYDLIHANGV 152 (235)
Q Consensus 80 ~~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-----~~~p~sFDlV~a~~v 152 (235)
....+||..|+|. |..++.++... ..+|+.++.+ +..+.+.+.|....+...-..+ ....+.||+++.+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~- 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV- 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC-
Confidence 3467899999985 66666665532 1457777776 6666666655322111000000 01136799987521
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+..+.+.|+++|.++...
T Consensus 210 --------~~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 210 --------GGPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred --------CCHHHHHHHHHhcccCCEEEEEc
Confidence 11256777889999999999764
No 276
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.43 E-value=3.9 Score=36.26 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=52.3
Q ss_pred CCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC----CCCCCccceeeehhhh
Q 026623 81 RYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF----STYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l----~~~p~sFDlV~a~~vl 153 (235)
...+||-.|+| .|..+..+++. +.. .++.++.+ +....+.+.|....+...-..+ ....+.+|+++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~-- 234 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT-- 234 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECC--
Confidence 45688999865 24455555543 321 25555555 6666666666422111100000 11236789987511
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.|.|+|+|.++..
T Consensus 235 -------~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 235 -------GVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred -------CChHHHHHHHHHHhcCCEEEEE
Confidence 1146889999999999999875
No 277
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=81.71 E-value=3 Score=40.00 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=65.4
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHH----cCccc---------cccccccCCC---CCCCc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYE----RGLIG---------IYHDWCEGFS---TYPRT 143 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~---------~~~~~~e~l~---~~p~s 143 (235)
..++||=+|-|.|--++.|.++|. ++.++-+|.. .|.+++.. |.+.+ .+.+ +++. +-.+.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d--DAf~wlr~a~~~ 365 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND--DAFQWLRTAADM 365 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEec--cHHHHHHhhccc
Confidence 478999999999999999999874 5788989987 88887652 22211 1111 2222 12379
Q ss_pred cceeeehhhhccCCCCCCh-------HHHHHHHhhhhcCCcEEEEEeCh
Q 026623 144 YDLIHANGVFSLYENTCKP-------EDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 144 FDlV~a~~vl~h~~~~~~~-------~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
||.|+.. ++|..++ +.+-.-..|-|+++|.+++.-..
T Consensus 366 fD~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 366 FDVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred ccEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 9999862 2222222 35566677889999999999543
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=81.70 E-value=2.9 Score=38.85 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHH---HHHHcCc------------cccccccccCCCCCCCcc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLG---VIYERGL------------IGIYHDWCEGFSTYPRTY 144 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~---~~~~Rgl------------~~~~~~~~e~l~~~p~sF 144 (235)
.+.++||=+|-|-|++.+.....+ -+-|+.-+|+-.++. ..+-+.+ +|.=...|+.+ ..++|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~--~~~~~ 196 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL--KENPF 196 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh--ccCCc
Confidence 357899999999999988877663 345666555542222 2333322 11111112221 14999
Q ss_pred ceeeehhhhccCCCCCC--hHHHHHHHhhhhcCCcEEEEEe
Q 026623 145 DLIHANGVFSLYENTCK--PEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 145 DlV~a~~vl~h~~~~~~--~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+|+...-=--- +-|. .+....-+.|-|||||++++..
T Consensus 197 dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999862111000 1111 1367788999999999999984
No 279
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=81.68 E-value=5.7 Score=35.43 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccccc---CCCCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE---GFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e---~l~~~p~sFDlV~a~~vl~ 154 (235)
...+||-.|||. |.++..+++. +. ..++.++.+ +....+.+.|....+....+ .+....+.||+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC--
Confidence 467889888765 5555556553 32 146666666 66665555554222211001 11112245898874211
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-...+.++.+.|+++|.++.-
T Consensus 241 -------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 241 -------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEE
Confidence 135788999999999999864
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.87 E-value=6.4 Score=38.86 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCceEeeeccccchHHHHHhc--CCCceeEEeecCcc-ccHHHHHHcCcccccccccc----------CCC--------
Q 026623 80 RRYRNVMDMNAGLGGFAAALES--PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE----------GFS-------- 138 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e----------~l~-------- 138 (235)
....+|+=+|||.=|+++.... .| ..|+.+|.+ +.++.+.+-|......+-.+ .++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 4578999999999887664433 34 369999998 88888777664211011001 011
Q ss_pred --CCC--CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 139 --TYP--RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 139 --~~p--~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+.+ +.+|+|+....... +..+.-+..|+-+.+||||.++.-
T Consensus 240 ~~~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEE
Confidence 011 46999987554421 112334469999999999998765
No 281
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=80.14 E-value=5.9 Score=31.70 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=46.6
Q ss_pred CccceeeehhhhccCCCCCCh----HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceE
Q 026623 142 RTYDLIHANGVFSLYENTCKP----EDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKI 217 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~----~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~ 217 (235)
..||+|+-. .|+- ..++ ..++.++.|+++|||.+..-.... .|++-+...-+.+.... |...+-..
T Consensus 49 ~~~Da~ylD-gFsP---~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~---~Vr~~L~~aGF~v~~~~---g~g~Kr~~ 118 (124)
T PF05430_consen 49 ARFDAWYLD-GFSP---AKNPELWSEELFKKLARLSKPGGTLATYSSAG---AVRRALQQAGFEVEKVP---GFGRKREM 118 (124)
T ss_dssp T-EEEEEE--SS-T---TTSGGGSSHHHHHHHHHHEEEEEEEEES--BH---HHHHHHHHCTEEEEEEE----STTSSEE
T ss_pred ccCCEEEec-CCCC---cCCcccCCHHHHHHHHHHhCCCcEEEEeechH---HHHHHHHHcCCEEEEcC---CCCCcchh
Confidence 677777653 2441 2233 599999999999999988765554 45677888888887543 22356778
Q ss_pred EEEEec
Q 026623 218 LIAVKQ 223 (235)
Q Consensus 218 l~~~k~ 223 (235)
+++.|.
T Consensus 119 ~~a~~~ 124 (124)
T PF05430_consen 119 LRAVKP 124 (124)
T ss_dssp EEEEC-
T ss_pred eEEEcC
Confidence 888774
No 282
>PRK10742 putative methyltransferase; Provisional
Probab=79.24 E-value=7.1 Score=35.16 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHH--HHHHhhhhCCCCCc--eEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccc--
Q 026623 55 SYQEDSKLWKKHVNA--YKKMNSLIGTRRYR--NVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIG-- 128 (235)
Q Consensus 55 ~f~~d~~~W~~~v~~--y~~~l~~l~~~~~r--~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~-- 128 (235)
+|.+..-..++.-.. -..+.+.++..... +|||+=||+|.-+..++..+. .|+.++-+..+....+.|+-.
T Consensus 58 DF~~~~~a~rR~~~~g~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~ 134 (250)
T PRK10742 58 DFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGY 134 (250)
T ss_pred EccCchHHHHHHhcCCCccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhh
Confidence 455544444443321 11233444433344 899999999999999998863 488888873333322333211
Q ss_pred --------------cccccc-cCCCCCCCccceeeehhhhccCCCCCChHHHHHHHh
Q 026623 129 --------------IYHDWC-EGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMD 170 (235)
Q Consensus 129 --------------~~~~~~-e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~ 170 (235)
.++..+ +-|...+.+||+|+..=.|.|-.. . ..+.+||.
T Consensus 135 ~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~~k-s--a~vkk~mr 188 (250)
T PRK10742 135 ADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQK-S--ALVKKEMR 188 (250)
T ss_pred hccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCCcc-c--cchhhhHH
Confidence 112111 112323468999999888876422 1 24556664
No 283
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=78.30 E-value=5.4 Score=36.25 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=30.4
Q ss_pred eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 146 LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 146 lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.|....+|||+++..++..++......|-||.+++|+
T Consensus 153 avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 153 AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 4677899999988789999999999999999999999
No 284
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=77.87 E-value=11 Score=35.86 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=58.2
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCc--c-c-cHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC-C
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTA--K-N-TLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE-N 158 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~--s-~-~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~-~ 158 (235)
+||=+|=.+|.++..|...++. .+ .|. + . ...-+...|+......+....+..|+.+|+|.. .+| +
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~-----~~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLI-----KVPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEE-----EeCCC
Confidence 7899999999999999865532 12 232 1 1 111233345543211111233445678999864 333 3
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
...++..|..+.++|.||+.+++....
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 334678888899999999999888654
No 285
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.80 E-value=17 Score=33.20 Aligned_cols=134 Identities=17% Similarity=0.290 Sum_probs=66.5
Q ss_pred EeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccc-cccccccCCCCCC-Cccceeeehh---hhccC---
Q 026623 85 VMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIG-IYHDWCEGFSTYP-RTYDLIHANG---VFSLY--- 156 (235)
Q Consensus 85 VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~-~~~~~~e~l~~~p-~sFDlV~a~~---vl~h~--- 156 (235)
|+|+=||.|++...|...+.- -+.++|....-...++.-..+ .++...+.+...+ ..+|++++.. -|+-.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~ 78 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKR 78 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhccc
Confidence 689999999999999876622 245677752222233332211 1122222232211 3589988742 23211
Q ss_pred CCCCC-hHHHHHHHhhhh---cCCcEEEEEeChHH---------HHHHHHHHhccCceeE--eecCC--CCCCCCceE-E
Q 026623 157 ENTCK-PEDILLEMDRIL---RPEGAVIFRDEVDA---------LNKVRKFAEGMRWDTK--MMDHE--DGPLMPEKI-L 218 (235)
Q Consensus 157 ~~~~~-~~~~L~Em~RVL---RPGG~lii~d~~~~---------~~~i~~~~~~~~W~~~--~~~~~--~~~~~~e~~-l 218 (235)
....+ -..++.|+.|++ || .+++-++..- +..+...++.+...+. +.+.. .-|+.++++ +
T Consensus 79 ~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ 156 (315)
T TIGR00675 79 KGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYI 156 (315)
T ss_pred CCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEE
Confidence 01112 224566666666 77 4666666542 2233333444444432 22222 246677776 5
Q ss_pred EEEe
Q 026623 219 IAVK 222 (235)
Q Consensus 219 ~~~k 222 (235)
++.+
T Consensus 157 ia~r 160 (315)
T TIGR00675 157 VGFR 160 (315)
T ss_pred EEEe
Confidence 5555
No 286
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.74 E-value=10 Score=34.36 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC---CCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF---STYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l---~~~p~sFDlV~a~~vl~ 154 (235)
...+||=.|||. |.++..+++. + ...|+.+|.+ +.++.+.+.|....+...-+.+ ....+.||+|+-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 457888888752 3344445443 3 2247777877 8888888877432221000111 1111348888641
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.+..+.|||||.+++.
T Consensus 243 -~----G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 -S----GHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 1 1135788899999999999976
No 287
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=76.56 E-value=9.5 Score=34.07 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=69.6
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcCc--------cc--cccccccCCC--C
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERGL--------IG--IYHDWCEGFS--T 139 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rgl--------~~--~~~~~~e~l~--~ 139 (235)
.+..+ .+.|+.+|||.=+.+-.|.... ...+..+|.+++++. +.+.|. ++ ...+|.+.|. -
T Consensus 77 ~~~~g-~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~g 153 (260)
T TIGR00027 77 AVAAG-IRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAG 153 (260)
T ss_pred HHhcC-CcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCC
Confidence 34444 6789999999998887775432 246889999877763 222111 00 0134544443 1
Q ss_pred CC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 140 YP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 140 ~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+ +.-=++++-.|+.+++ ......+|..|.+..-||+.+++.-
T Consensus 154 fd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 154 FDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 32 4455788999999985 3567889999999888999998863
No 288
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=75.88 E-value=4 Score=36.74 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=63.8
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----CccccccccccCCCC-CCCccceeeehhhhcc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIGIYHDWCEGFST-YPRTYDLIHANGVFSL 155 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~~~~~~~e~l~~-~p~sFDlV~a~~vl~h 155 (235)
..+|||+|||.=-|+........ ...+.++|+. .+.+++..- |....+ .+++-+.- .+.+.|+.+.-=+++-
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~-~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPHDA-RVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CEEE-EEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCcce-eEeeeeccCCCCCcchhhHHHHHHH
Confidence 67999999999999887776532 2368899998 666653222 211111 11233333 3388999987544442
Q ss_pred CC-CCCC-hHHHHHHHhhhhcCCcEEEEEeChH------------HHHHHHHHHhccCceeEee
Q 026623 156 YE-NTCK-PEDILLEMDRILRPEGAVIFRDEVD------------ALNKVRKFAEGMRWDTKMM 205 (235)
Q Consensus 156 ~~-~~~~-~~~~L~Em~RVLRPGG~lii~d~~~------------~~~~i~~~~~~~~W~~~~~ 205 (235)
+. .+.. --++|.+++ .=.++||-+.. +-..++.++..=.|.+...
T Consensus 184 le~q~~g~g~~ll~~~~-----~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 184 LERQRRGAGLELLDALR-----SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRL 242 (251)
T ss_dssp HHHHSTTHHHHHHHHSC-----ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHhcchHHHHHHHhC-----CCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeee
Confidence 21 1111 123333332 22677774221 2456888888888987643
No 289
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=75.56 E-value=11 Score=32.49 Aligned_cols=90 Identities=20% Similarity=0.117 Sum_probs=51.8
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
+..+||=.|||. |..+..+++. +.. .|+.++.+ +.+..+.+.|.........+.+. ..+.+|+|+-..
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~d~vl~~~------ 167 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAADTADEI-GGRGADVVIEAS------ 167 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCccccccchhhh-cCCCCCEEEEcc------
Confidence 456777778764 4454445443 321 26677766 67777777762111100011111 235688887411
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 158 NTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 158 ~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.....+.+..+.|+++|.++..
T Consensus 168 ---~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 ---GSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ---CChHHHHHHHHHhcCCcEEEEE
Confidence 1245788999999999999865
No 290
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=75.17 E-value=9.2 Score=35.45 Aligned_cols=84 Identities=19% Similarity=0.308 Sum_probs=51.7
Q ss_pred hhhhCCCCCceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehh
Q 026623 74 NSLIGTRRYRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANG 151 (235)
Q Consensus 74 l~~l~~~~~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~ 151 (235)
+..|...+...++|.=-|.||-+.++++. +. ..|+++|-- +++..+.++ |..|.+.|-++|++
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~--~~li~~DrD~~a~~~a~~~------------l~~~~~r~~~~~~~- 77 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPN--GRLIGIDRDPEALERAKER------------LKKFDDRFIFIHGN- 77 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT---EEEEEES-HHHHHHHHCC------------TCCCCTTEEEEES--
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHH------------HhhccceEEEEecc-
Confidence 33444555678999999999999999875 32 579999997 777776543 34456788888873
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAV 179 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~l 179 (235)
| .++...|.+...+-+..|.+
T Consensus 78 -F------~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 78 -F------SNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp -G------GGHHHHHHHTTTTS-EEEEE
T ss_pred -H------HHHHHHHHHccCCCccCEEE
Confidence 2 24556666663333444443
No 291
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=74.86 E-value=15 Score=32.36 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=53.1
Q ss_pred CCCceEeeecc--ccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccC----CC-CCCCccceeeehh
Q 026623 80 RRYRNVMDMNA--GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG----FS-TYPRTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GC--G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~----l~-~~p~sFDlV~a~~ 151 (235)
....+||=.|+ |.|.++..+++.. ...|+.++.+ +..+.+.+.|....+....+. +- ..++.+|+|+-
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld-- 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFD-- 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEE--
Confidence 34567877774 5666776676542 1246666665 666777666652222111111 10 11256888863
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+-=...+.+..+.|+++|.++..
T Consensus 218 --------~~g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 218 --------NVGGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred --------CCCHHHHHHHHHhhccCCEEEEE
Confidence 11136789999999999999864
No 292
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=74.64 E-value=23 Score=31.30 Aligned_cols=98 Identities=22% Similarity=0.227 Sum_probs=61.6
Q ss_pred HHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhh
Q 026623 95 FAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRIL 173 (235)
Q Consensus 95 faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVL 173 (235)
||.+|++.+. ...|++.|.+ ..+..+.+.|.+......-+.+ ..+|+|+.+-=+. .+..+|.|+...|
T Consensus 1 ~A~aL~~~g~-~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP~~------~~~~~l~~~~~~~ 69 (258)
T PF02153_consen 1 IALALRKAGP-DVEVYGYDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVPVS------AIEDVLEEIAPYL 69 (258)
T ss_dssp HHHHHHHTTT-TSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S-HH------HHHHHHHHHHCGS
T ss_pred ChHHHHhCCC-CeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCCHH------HHHHHHHHhhhhc
Confidence 5788888752 3479999999 8888888999765442111111 4569987633222 3568999999988
Q ss_pred cCCcEEEEEe--ChHHHHHHHHHHh-ccCceeE
Q 026623 174 RPEGAVIFRD--EVDALNKVRKFAE-GMRWDTK 203 (235)
Q Consensus 174 RPGG~lii~d--~~~~~~~i~~~~~-~~~W~~~ 203 (235)
+||+.+.=.- ..+++..+++... ..++-..
T Consensus 70 ~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~ 102 (258)
T PF02153_consen 70 KPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGG 102 (258)
T ss_dssp -TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHhcCcccceeec
Confidence 8886654332 3456777777766 6666544
No 293
>PHA01634 hypothetical protein
Probab=74.63 E-value=6.3 Score=32.53 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHHHhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHc
Q 026623 59 DSKLWKKHVNAYKKMNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYER 124 (235)
Q Consensus 59 d~~~W~~~v~~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~R 124 (235)
+-..|+.-..+|.. |.- ..++|+|+|++-|.-+.+++-+++ -.|+++..+..+.-..+.
T Consensus 11 ~c~ywrey~~~Y~~----idv-k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 11 ECDYWREYPHAYGM----LNV-YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cchHHHHHHHHhhh----eee-cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHH
Confidence 44667776666664 222 467999999999999988887773 468888887544443333
No 294
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=74.52 E-value=11 Score=33.29 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred ceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc----Cccc--cccccccCCCCCC-Cccceeeehhhhc
Q 026623 83 RNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER----GLIG--IYHDWCEGFSTYP-RTYDLIHANGVFS 154 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R----gl~~--~~~~~~e~l~~~p-~sFDlV~a~~vl~ 154 (235)
..+-|+|+|+|-++..-+++ .-.|.++... ..-..+.+. |+.. .+. +.-..|+ ..-|+|+|-++=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~---gDA~~y~fe~ADvvicEmlDT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVV---GDARDYDFENADVVICEMLDT 107 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEe---cccccccccccceeHHHHhhH
Confidence 57899999999764333332 1235555554 222233232 2211 222 2233466 7889999966655
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.+-. +..+.+|.-+-.-||-.|.+|=..
T Consensus 108 aLi~-E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 108 ALIE-EKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred Hhhc-ccccHHHHHHHHHhhcCCccccHH
Confidence 4422 233566666666888888887543
No 295
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=73.83 E-value=12 Score=33.49 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=52.8
Q ss_pred CCceEeeecccc-chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCC-CCC-Cccceeeehhh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFS-TYP-RTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~-~~p-~sFDlV~a~~v 152 (235)
...+||-.|+|. |.++..|++.- ..+|+.+..+ +....+.+.|....+ + ++.+.+. ..+ +.+|+++...
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~- 235 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT- 235 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECC-
Confidence 356888888764 66666676642 2345555444 666666555532211 1 1111121 112 5689887411
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.+.|+++|.++..
T Consensus 236 --------g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 236 --------GNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred --------CCHHHHHHHHHHHhcCCEEEEE
Confidence 0146789999999999999865
No 296
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=73.73 E-value=21 Score=34.92 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCceEeeeccccchHHHHHhc---CCCceeEEeecCcc-ccHHHHHHc----Ccc---ccccccccCCCCC----C-Ccc
Q 026623 81 RYRNVMDMNAGLGGFAAALES---PKSWVMNVVPTTAK-NTLGVIYER----GLI---GIYHDWCEGFSTY----P-RTY 144 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~---~~~~~~~V~~~D~s-~~L~~~~~R----gl~---~~~~~~~e~l~~~----p-~sF 144 (235)
...+|.|-.||+|+|...-.+ ...-...+.|.+.. .+...+.-. |+. ...|+..-.=|.+ . ..|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 455899999999997443332 11101346777766 565554332 322 1222211111112 3 679
Q ss_pred ceeeehhhhc---cC------------------CCCC-ChHHHHHHHhhhhcCCcEEEEE
Q 026623 145 DLIHANGVFS---LY------------------ENTC-KPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 145 DlV~a~~vl~---h~------------------~~~~-~~~~~L~Em~RVLRPGG~lii~ 182 (235)
|.|+++-=|+ +. +... .-...+++|.+.|+|||...|.
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 9999865553 00 0001 1148899999999999876554
No 297
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.40 E-value=9.5 Score=34.65 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=71.7
Q ss_pred ceEeeeccc--cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-CccceeeehhhhccCCC
Q 026623 83 RNVMDMNAG--LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHANGVFSLYEN 158 (235)
Q Consensus 83 r~VLD~GCG--~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~~vl~h~~~ 158 (235)
.+|.=+|.| -|.|+.+|+..+ +...+++.|.+ +.+..+.+.|++..+. +..-.-. ...|+|+-+-=+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lgv~d~~~---~~~~~~~~~~aD~VivavPi----- 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELGVIDELT---VAGLAEAAAEADLVIVAVPI----- 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcCcccccc---cchhhhhcccCCEEEEeccH-----
Confidence 355556655 356888888776 56789999999 8888888888765431 2221123 778999853222
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEE--eChHHHHHHHHHHhccCceeE
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFR--DEVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~--d~~~~~~~i~~~~~~~~W~~~ 203 (235)
.....++.|+..-|+||-.+.=. ....+++.+++...... .+.
T Consensus 75 -~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v 119 (279)
T COG0287 75 -EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV 119 (279)
T ss_pred -HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE
Confidence 23568888988888888655422 23456777777776655 443
No 298
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=72.02 E-value=13 Score=37.39 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCccceeeehhhhccCCCCCCh----HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEe
Q 026623 141 PRTYDLIHANGVFSLYENTCKP----EDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKM 204 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~----~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~ 204 (235)
+..||+++. +.|+ |. .++ +.++.+|.|.++|||.++--.... .|++-+...-.++..
T Consensus 164 ~~~~d~~~l-D~Fs--P~-~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~---~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 164 DARADAWFL-DGFA--PA-KNPDMWSPNLFNALARLARPGATLATFTSAG---FVRRGLQEAGFTVRK 224 (662)
T ss_pred cccccEEEe-CCCC--Cc-cChhhccHHHHHHHHHHhCCCCEEEEeehHH---HHHHHHHHcCCeeee
Confidence 356888875 3333 11 222 599999999999999999765444 344455555555553
No 299
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=70.80 E-value=14 Score=32.79 Aligned_cols=90 Identities=21% Similarity=0.219 Sum_probs=49.2
Q ss_pred CceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCC--CCCCccceeeehhh
Q 026623 82 YRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFS--TYPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~--~~p~sFDlV~a~~v 152 (235)
..+||-.|+| .|.++..+++. +. ..++.++.+ .....+.+-|....+ + ++.+.+. +..+.||+++-..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~--~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~- 244 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGA--ARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV- 244 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc-
Confidence 5678887765 35555555543 31 245555555 555555554421111 1 1111111 1226789887411
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.+.|+++|.++..
T Consensus 245 --------g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 245 --------GFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred --------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1125889999999999998864
No 300
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=70.41 E-value=24 Score=29.40 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=59.8
Q ss_pred eccccchHHHHHhcCCCceeEEeec--CccccH-----------HHHHHcCccccccccccCCCC----CCCccceeeeh
Q 026623 88 MNAGLGGFAAALESPKSWVMNVVPT--TAKNTL-----------GVIYERGLIGIYHDWCEGFST----YPRTYDLIHAN 150 (235)
Q Consensus 88 ~GCG~G~faa~L~~~~~~~~~V~~~--D~s~~L-----------~~~~~Rgl~~~~~~~~e~l~~----~p~sFDlV~a~ 150 (235)
+|=|-=+|+++|+....-..++++. |..+.+ +...+.|....+--++..+.. ..+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 3444446888888752113345443 332222 233344543322222344442 23899999853
Q ss_pred hhhccCC------------CCCChHHHHHHHhhhhcCCcEEEEEe--ChH--HHHHHHHHHhccCcee
Q 026623 151 GVFSLYE------------NTCKPEDILLEMDRILRPEGAVIFRD--EVD--ALNKVRKFAEGMRWDT 202 (235)
Q Consensus 151 ~vl~h~~------------~~~~~~~~L~Em~RVLRPGG~lii~d--~~~--~~~~i~~~~~~~~W~~ 202 (235)
|-|.. ++.-+..++.-..++|+|+|.+.|+= ..+ .| .|+++++.-...+
T Consensus 83 --FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W-~i~~lA~~~gl~l 147 (166)
T PF10354_consen 83 --FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSW-NIEELAAEAGLVL 147 (166)
T ss_pred --CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccc-cHHHHHHhcCCEE
Confidence 23332 11123488889999999999999983 222 23 3455655554443
No 301
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.29 E-value=74 Score=28.33 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=84.5
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH----HcCccccc-cccccCCCC-CC-Cccceeeehhhhcc
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY----ERGLIGIY-HDWCEGFST-YP-RTYDLIHANGVFSL 155 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~----~Rgl~~~~-~~~~e~l~~-~p-~sFDlV~a~~vl~h 155 (235)
++.|+||=-|.+..+|...+. +-.++..|.. .-++.+. .-++.... ......|+- .+ +.+|+++...+=-
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH-
Confidence 499999999999999998753 3456777776 5454332 22442211 111123443 33 5899887643321
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEecc
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQY 224 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~~ 224 (235)
..+..+|.|-...|+-==.+|+.-+... ..+++++....|....--.-.+...=-.||++.|.-
T Consensus 97 ----~lI~~ILee~~~~l~~~~rlILQPn~~~-~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e~~~ 160 (226)
T COG2384 97 ----TLIREILEEGKEKLKGVERLILQPNIHT-YELREWLSANSYEIKAETILEEDGKIYEILVVEKSS 160 (226)
T ss_pred ----HHHHHHHHHhhhhhcCcceEEECCCCCH-HHHHHHHHhCCceeeeeeeecccCeEEEEEEEecCC
Confidence 2467899999998886668888865532 367899999999987422211111345688888873
No 302
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=70.17 E-value=12 Score=33.41 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=51.6
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccc---cCC-CCCC-Cccceeeehhh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC---EGF-STYP-RTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~---e~l-~~~p-~sFDlV~a~~v 152 (235)
...+||-.|+|. |.++..+++. +.. .++.++.+ ...+.+.+.|....+.... +.+ ..-+ +.||+++-.
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~--~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~-- 234 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAK--RVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA-- 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC--
Confidence 456888888654 5566566553 321 25565555 5566665556422221100 111 1112 458988741
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.++.+.|+++|.++..
T Consensus 235 ---~----g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 ---A----GSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred ---C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 1 1246788999999999999875
No 303
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.76 E-value=12 Score=32.89 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=34.7
Q ss_pred hHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHHhccCceeE
Q 026623 162 PEDILLEMDRILRPEGAVIFRDEVDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~~~~~W~~~ 203 (235)
....+.|+.|+|+++|.+++.........+....+.+.|...
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~ 119 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEIL 119 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEe
Confidence 578999999999999999999887666677777776777654
No 304
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=69.45 E-value=13 Score=32.71 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=66.2
Q ss_pred eEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCC--CCCCccceeeeh---hhhccC--
Q 026623 84 NVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--TYPRTYDLIHAN---GVFSLY-- 156 (235)
Q Consensus 84 ~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--~~p~sFDlV~a~---~vl~h~-- 156 (235)
+|+|+=||.|++...|...+ .-.+.++|........+++-...........+. ..|+.+|++++. .-||..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFPEVICGDITEIDPSDLPKDVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHTEEEESHGGGCHHHHHHHT-SEEEEE---TTTSTTST
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhcccccccccccccccccccccceEEEeccCCceEecccc
Confidence 78999999999999999887 234667777622222333322111111111122 122258998873 233321
Q ss_pred -----CCCCChHHHHHHHhhhhcCCcEEEEEeCh---------HHHHHHHHHHhccCceeE--eecCC--CCCCCCceEE
Q 026623 157 -----ENTCKPEDILLEMDRILRPEGAVIFRDEV---------DALNKVRKFAEGMRWDTK--MMDHE--DGPLMPEKIL 218 (235)
Q Consensus 157 -----~~~~~~~~~L~Em~RVLRPGG~lii~d~~---------~~~~~i~~~~~~~~W~~~--~~~~~--~~~~~~e~~l 218 (235)
..+..+-.-+.++-..+||- +++-|+. ..+..|.+.++++...+. +.+.. ..|+.+++++
T Consensus 80 ~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~f 157 (335)
T PF00145_consen 80 RKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRERVF 157 (335)
T ss_dssp HHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEE
T ss_pred ccccccccchhhHHHHHHHhhccce--EEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCceeeEE
Confidence 12223445556666677893 4444432 234555555666555543 22222 3566677765
Q ss_pred EE
Q 026623 219 IA 220 (235)
Q Consensus 219 ~~ 220 (235)
+.
T Consensus 158 iv 159 (335)
T PF00145_consen 158 IV 159 (335)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 305
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=69.14 E-value=10 Score=35.02 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=50.9
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcC-----ccccccccccCCC----CCC-
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERG-----LIGIYHDWCEGFS----TYP- 141 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rg-----l~~~~~~~~e~l~----~~p- 141 (235)
++..+...+...++|.=||.||-+.+|++.-. ...|+++|.. .++..+.++- -+..+|+....+. -..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCC
Confidence 34444444556899999999999999887521 1469999998 8888776541 1122333222221 112
Q ss_pred Cccceeeehhhhc
Q 026623 142 RTYDLIHANGVFS 154 (235)
Q Consensus 142 ~sFDlV~a~~vl~ 154 (235)
+++|.|+++..++
T Consensus 91 ~~vDgIl~DLGvS 103 (305)
T TIGR00006 91 TKIDGILVDLGVS 103 (305)
T ss_pred CcccEEEEeccCC
Confidence 5678877777766
No 306
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=69.14 E-value=78 Score=28.46 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=59.6
Q ss_pred CCCceEeeeccccc-hHHHHHhcCCCceeEEeecCcc-ccHHH----HHHcCcc--ccccccccCCCCCC-Cccceeeeh
Q 026623 80 RRYRNVMDMNAGLG-GFAAALESPKSWVMNVVPTTAK-NTLGV----IYERGLI--GIYHDWCEGFSTYP-RTYDLIHAN 150 (235)
Q Consensus 80 ~~~r~VLD~GCG~G-~faa~L~~~~~~~~~V~~~D~s-~~L~~----~~~Rgl~--~~~~~~~e~l~~~p-~sFDlV~a~ 150 (235)
-.+++||=+|=.-- ++|.+|...+ .+|+-+|+- ..+.+ +.+.|+. ...||...+||..= +.||++++.
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~---~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLP---KRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCC---CeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeC
Confidence 35789999985544 5777887655 357777776 66664 4445663 34577778888533 999999982
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCc---EEEEEeC---hHHHHHHHHHHhccCceeE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEG---AVIFRDE---VDALNKVRKFAEGMRWDTK 203 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG---~lii~d~---~~~~~~i~~~~~~~~W~~~ 203 (235)
=.-+- ..+.-++.---.-||..| +|.++.. .+.+.++++.+-.|.-.+.
T Consensus 120 PPyT~----~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 120 PPYTP----EGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SSH----HHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred CCCCH----HHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 11110 112355555556777655 4555543 3457788998888887765
No 307
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=68.97 E-value=9.2 Score=33.58 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=41.3
Q ss_pred CceEeeeccccchHHHHHhcC--CC-----ceeEEeecCccccHHHHHHcCccc---------cccccccCCCCCCCccc
Q 026623 82 YRNVMDMNAGLGGFAAALESP--KS-----WVMNVVPTTAKNTLGVIYERGLIG---------IYHDWCEGFSTYPRTYD 145 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~--~~-----~~~~V~~~D~s~~L~~~~~Rgl~~---------~~~~~~e~l~~~p~sFD 145 (235)
.-+|+++|+|.|.++..+.+. .. -.+.+.-++.|..|....++-|.. .-..|.+.++-.| ..-
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p-~~~ 97 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP-FPG 97 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS--CCE
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc-CCE
Confidence 369999999999998887652 11 124678888885444333333322 1123445444223 444
Q ss_pred eeeehhhhccCC
Q 026623 146 LIHANGVFSLYE 157 (235)
Q Consensus 146 lV~a~~vl~h~~ 157 (235)
+|+|+-+|.-+|
T Consensus 98 ~iiaNE~~DAlP 109 (252)
T PF02636_consen 98 FIIANELFDALP 109 (252)
T ss_dssp EEEEESSGGGS-
T ss_pred EEEEeeehhcCc
Confidence 677777776554
No 308
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=68.85 E-value=6.8 Score=34.26 Aligned_cols=108 Identities=14% Similarity=0.024 Sum_probs=50.1
Q ss_pred HHHHHhhhhCCCCCceEeeeccccchHHHHHhc----CCCceeEEeecCcc-ccH-HHHHHc----CccccccccccCCC
Q 026623 69 AYKKMNSLIGTRRYRNVMDMNAGLGGFAAALES----PKSWVMNVVPTTAK-NTL-GVIYER----GLIGIYHDWCEGFS 138 (235)
Q Consensus 69 ~y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~----~~~~~~~V~~~D~s-~~L-~~~~~R----gl~~~~~~~~e~l~ 138 (235)
.|..++-.+++ +.|+.+|.-.||-+..+++ .+ -...|+++|+. ... ..+.+. .-|..+.+.+-...
T Consensus 23 ~~qeli~~~kP---d~IIE~Gi~~GGSli~~A~ml~~~~-~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 23 AYQELIWELKP---DLIIETGIAHGGSLIFWASMLELLG-GKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTH
T ss_pred HHHHHHHHhCC---CeEEEEecCCCchHHHHHHHHHHhC-CCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHH
Confidence 35555555655 5899999999986554432 11 12468999984 222 122232 22333322222111
Q ss_pred C--------CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 139 T--------YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 139 ~--------~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
. .+..-.+|+- +. +|. .+.....|.-...++.||+++|+-|+
T Consensus 99 ~~~~v~~~~~~~~~vlVil-Ds-~H~--~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVIL-DS-SHT--HEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp HHHTSGSS----SSEEEEE-SS-------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHHHhhccCCceEEEE-CC-Ccc--HHHHHHHHHHhCccCCCCCEEEEEec
Confidence 0 1123334442 11 121 13566788888999999999999984
No 309
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.57 E-value=12 Score=33.96 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=52.4
Q ss_pred CCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc--c-----cccCCC--CCCCccc--
Q 026623 80 RRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH--D-----WCEGFS--TYPRTYD-- 145 (235)
Q Consensus 80 ~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~--~-----~~e~l~--~~p~sFD-- 145 (235)
....+||=.|||. |.++..++.. + .+|+.++.+ +.++.+.+.|....+. + +.+.+. +..+-+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 3467899999855 4555555543 4 257777777 7788887777422211 0 001010 1112344
Q ss_pred --eeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 146 --LIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 146 --lV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+|+ .-. .-...+.+..+.||+||.+++.-
T Consensus 242 ~d~v~-----d~~----g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 242 GWKIF-----ECS----GSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred cCEEE-----ECC----CChHHHHHHHHHHhcCCeEEEEC
Confidence 443 111 11367778889999999998863
No 310
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=68.38 E-value=17 Score=32.35 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCceEeeecc--ccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc--cc---cccCCC-CCCCccceeeehh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD---WCEGFS-TYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~---~~e~l~-~~p~sFDlV~a~~ 151 (235)
...+||=.|+ |.|.++..+++.. ...|+.++.+ +.++.+.+-|....+ .+ +.+.+. ..++.+|+|+-
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d-- 213 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFD-- 213 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEE--
Confidence 4568887875 4667777776642 1346666666 677777666642221 10 000000 11356888863
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. . ...+.+..+.|+|||.+++-
T Consensus 214 ---~~----G-~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 214 ---NV----G-GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred ---CC----C-HHHHHHHHHHhCcCcEEEEe
Confidence 11 1 24568899999999999975
No 311
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.30 E-value=15 Score=33.42 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=50.3
Q ss_pred CCceEeeeccccchH-HHHHhcC--CCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccC
Q 026623 81 RYRNVMDMNAGLGGF-AAALESP--KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLY 156 (235)
Q Consensus 81 ~~r~VLD~GCG~G~f-aa~L~~~--~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~ 156 (235)
...+||=.|||.=++ +..++++ + ...|+.+|.+ +.++.+.+-+-.... +.+. ....||+|+=...
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~~~~~k~~~a~~~~~~~~~----~~~~-~~~g~d~viD~~G---- 231 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYP--ESKLVVFGKHQEKLDLFSFADETYLI----DDIP-EDLAVDHAFECVG---- 231 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--CCcEEEEeCcHhHHHHHhhcCceeeh----hhhh-hccCCcEEEECCC----
Confidence 467899999875453 3444432 2 2357777776 666666542211111 1111 1124788763111
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 157 ENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 157 ~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. ......+.+.-+.|||||.+++-
T Consensus 232 -~-~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 232 -G-RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred -C-CccHHHHHHHHHhCcCCcEEEEE
Confidence 0 01246788999999999999875
No 312
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.51 E-value=21 Score=31.97 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=49.6
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccc-------ccCCC-CCC-Cccceee
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW-------CEGFS-TYP-RTYDLIH 148 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~-------~e~l~-~~p-~sFDlV~ 148 (235)
+..+||=.|+|. |.++..+++. +.. .|+.++.+ +....+.+.|....+... .+.+. ..+ +.||+|+
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~--~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGAT--KVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 356777777654 5566666654 321 15555544 555555554432211100 11111 122 5589887
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-.. .-...+.++.+.|+++|.++..
T Consensus 240 d~~---------g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 240 ECT---------GAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ECC---------CCHHHHHHHHHHhhcCCEEEEE
Confidence 411 1134789999999999999865
No 313
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=67.15 E-value=13 Score=33.93 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=56.4
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-----ccHHHHHHcCc-cccccccccCCCC-CC---Cccceeee
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-----NTLGVIYERGL-IGIYHDWCEGFST-YP---RTYDLIHA 149 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-----~~L~~~~~Rgl-~~~~~~~~e~l~~-~p---~sFDlV~a 149 (235)
.+..+||=+|++.|..-....+-=.-..-|.++.+| +.+..+..|-. +.++.| + ..|. |- .-.|+|++
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED-A-rhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED-A-RHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc-C-CCchheeeeeeeEEEEec
Confidence 456799999999998777766530011235555554 34445666654 445422 1 1231 11 35566654
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-+.+.....-+..-..--||+||.|+|+
T Consensus 233 -----Dvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 -----DVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred -----cCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 3322223345566777889999999999
No 314
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=66.12 E-value=13 Score=35.41 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=54.9
Q ss_pred cchHHHHHHHHH-HHHHhhhhCCCCCceEeeeccccchHHHHHhcC-----C--CceeEEeecCccccHHHHHHcCccc-
Q 026623 58 EDSKLWKKHVNA-YKKMNSLIGTRRYRNVMDMNAGLGGFAAALESP-----K--SWVMNVVPTTAKNTLGVIYERGLIG- 128 (235)
Q Consensus 58 ~d~~~W~~~v~~-y~~~l~~l~~~~~r~VLD~GCG~G~faa~L~~~-----~--~~~~~V~~~D~s~~L~~~~~Rgl~~- 128 (235)
+=+..+...+.. ..+++..++......++.||+|.|.|+..|... | .-...+.-+..|..|......-|-+
T Consensus 53 els~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 53 ELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 345667777764 444555565544568999999999998887652 1 0134566666775555332222211
Q ss_pred -cccccccCCCCCCCcc-ceeeehhhhccC
Q 026623 129 -IYHDWCEGFSTYPRTY-DLIHANGVFSLY 156 (235)
Q Consensus 129 -~~~~~~e~l~~~p~sF-DlV~a~~vl~h~ 156 (235)
....|++-+.-.|+.| =+|+||-+|.-+
T Consensus 133 ~~~~~~~~~~e~~p~~~~~i~~~NElfDAl 162 (370)
T COG1565 133 EDLIRWVEWVEDLPKKFPGIVVSNELFDAL 162 (370)
T ss_pred ccchhHHHHHHhccccCceEEEechhhccc
Confidence 2223333333334553 345667666543
No 315
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=65.68 E-value=18 Score=32.96 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=53.7
Q ss_pred CCCceEeeecc--ccchHHHHHhcCCCceeEEeecCcc-ccHHHHH-HcCccccc--c---ccccCCC-CCCCccceeee
Q 026623 80 RRYRNVMDMNA--GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY-ERGLIGIY--H---DWCEGFS-TYPRTYDLIHA 149 (235)
Q Consensus 80 ~~~r~VLD~GC--G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~-~Rgl~~~~--~---~~~e~l~-~~p~sFDlV~a 149 (235)
....+||=.|| |.|.++..+++.- ...|+.++.+ +.++.+. +-|....+ + ++.+.+. ..++.+|+|+-
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 34678888887 4677777777642 1346666666 6666655 45642222 1 1111111 11246888863
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. . ...+.+..+.||+||.+++.
T Consensus 235 -----~v----G-~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 235 -----NV----G-GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred -----CC----C-HHHHHHHHHHhccCCEEEEE
Confidence 11 1 35788899999999999864
No 316
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=65.44 E-value=44 Score=31.50 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=63.5
Q ss_pred hCCCCCceEeeeccccc----hHHHHHhcC--CCceeEEeecCc----c-ccHHH--------HHHcCccccccc-ccc-
Q 026623 77 IGTRRYRNVMDMNAGLG----GFAAALESP--KSWVMNVVPTTA----K-NTLGV--------IYERGLIGIYHD-WCE- 135 (235)
Q Consensus 77 l~~~~~r~VLD~GCG~G----~faa~L~~~--~~~~~~V~~~D~----s-~~L~~--------~~~Rgl~~~~~~-~~e- 135 (235)
+.....-.|+|+|.|.| .|..+|+.+ +.-...||+++. + ..++. |..-|+.-.++. ..+
T Consensus 106 ~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~ 185 (374)
T PF03514_consen 106 FEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVES 185 (374)
T ss_pred hccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCc
Confidence 34445568999999999 478888875 233678999988 4 44443 333455322222 111
Q ss_pred --CC-----CCCCCccceeeehhhhccCCCC----CChHHHHHHHhhhhcCCcEEEEE
Q 026623 136 --GF-----STYPRTYDLIHANGVFSLYENT----CKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 136 --~l-----~~~p~sFDlV~a~~vl~h~~~~----~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.+ ...++..=+|.|..-|||+.+. .++.+.+...-|-|+|.-.+++-
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 12 1233444355567777887521 12456778888999999555554
No 317
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.38 E-value=11 Score=34.88 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCC--Cccceeeehhhh
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYP--RTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p--~sFDlV~a~~vl 153 (235)
+.....|+|+-.||.+-.|.+++ |-|+.+|.-.|-+-..+-|++... -.+.|-|-| ...|-.+|..|=
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma~sL~dtg~v~h~--r~DGfk~~P~r~~idWmVCDmVE 280 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMAQSLMDTGQVTHL--REDGFKFRPTRSNIDWMVCDMVE 280 (358)
T ss_pred CCceeeecccCCCccchhhhhcc---eEEEEeccchhhhhhhcccceeee--eccCcccccCCCCCceEEeehhc
Confidence 35678999999999999999987 558899987777766777866532 234566555 789999986654
No 318
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=65.04 E-value=3.7 Score=32.58 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCc
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA 114 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~ 114 (235)
......|+|||.|-+.--|...|- +-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY---PGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC---Ccccccc
Confidence 355789999999987766665431 2346665
No 319
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=64.76 E-value=26 Score=31.39 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=49.4
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC-----CCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS-----TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~-----~~p~sFDlV~a~~v 152 (235)
+..+||-.|||. |.++..|++. +. ..|..++.+ +....+.+-|....+....+.+. ...+.+|+|+...
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~- 239 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGA--SLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMS- 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECC-
Confidence 456777777653 4455555553 32 135455544 44455555554222111001110 1125788887411
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.++.+.|+|+|.+++..
T Consensus 240 --------g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 --------GNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred --------CCHHHHHHHHHHhccCCEEEEEc
Confidence 01357889999999999998763
No 320
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=64.66 E-value=36 Score=30.93 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=53.4
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceeeehh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~a~~ 151 (235)
...+||=.|||. |.++..+++. + ...|+.+|.+ +.++++.+-|....+. ++.+.+- +..+.+|+|+-.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G--~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~- 252 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAG--ASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA- 252 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC-
Confidence 356888888753 3445555543 3 2247777777 7778887767522221 1111111 112468888631
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.+..+.||+||.+++.
T Consensus 253 ----~----g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 ----V----GRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ----C----CCHHHHHHHHHHhccCCEEEEE
Confidence 1 1135788888999999999875
No 321
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=63.66 E-value=21 Score=31.97 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=52.6
Q ss_pred CCCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH-cCcccccc-----ccccCCC-CCCCccceee
Q 026623 80 RRYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE-RGLIGIYH-----DWCEGFS-TYPRTYDLIH 148 (235)
Q Consensus 80 ~~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~-Rgl~~~~~-----~~~e~l~-~~p~sFDlV~ 148 (235)
..+.+||=.|+ |.|.++..+++. +. +|+.++.+ +..+.+.+ -|....+. ++.+.+. ..++.+|+|+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~---~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC---YVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 34578888886 566677777664 43 46665555 56666655 45422211 1111111 1125688886
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
- .. . ...+.+..+.|+++|.++.-
T Consensus 227 d-----~~----g-~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 227 D-----NV----G-GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred E-----CC----C-HHHHHHHHHHhccCcEEEEe
Confidence 3 11 1 36788999999999999864
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=63.62 E-value=8.6 Score=37.05 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=27.7
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK 115 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s 115 (235)
..+..|.|+|+|-|.++..|.=+- ...|.++|.+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegs 185 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGS 185 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccc
Confidence 457899999999999999997542 3568899987
No 323
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.02 E-value=27 Score=32.93 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=61.1
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc---ccc-ccC----CC-CCC-Cccceeee
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY---HDW-CEG----FS-TYP-RTYDLIHA 149 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~---~~~-~e~----l~-~~p-~sFDlV~a 149 (235)
...+||=+|||+=++.+-|..+..-+..|+.+|.. +.|+.|++-|.-.+. +.. -+. .. .+. ..||+.+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 46799999999988877776653335689999999 999999887752221 110 000 00 122 44888774
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
...+ +..++-.--.||+||.+++-.
T Consensus 249 CsG~---------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 249 CSGA---------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred ccCc---------hHHHHHHHHHhccCCEEEEec
Confidence 3333 344444566899999988874
No 324
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.49 E-value=15 Score=33.74 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=39.1
Q ss_pred CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC-----------hHHHHHHHHHHhccCcee
Q 026623 140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE-----------VDALNKVRKFAEGMRWDT 202 (235)
Q Consensus 140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~-----------~~~~~~i~~~~~~~~W~~ 202 (235)
|.+-||+|+.++...|+-. -|+.++++|||.|++-.. ..+.++|.++++.-.|+-
T Consensus 219 y~~~Fd~ifvs~s~vh~L~--------p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFLK--------PELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred hcCCCCEEEEhhhhHhhcc--------hHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 6689999987555443211 148889999999998742 235678888888888764
No 325
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=61.45 E-value=30 Score=30.84 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=50.2
Q ss_pred CceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH-cCcccccc----ccccCCC-CCCCccceeeehh
Q 026623 82 YRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE-RGLIGIYH----DWCEGFS-TYPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~-Rgl~~~~~----~~~e~l~-~~p~sFDlV~a~~ 151 (235)
..+||=.|+ |.|.++..+++. +. ..|+.++.+ +....+.+ -|....+. ++.+.+- ..++.+|+|+-.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~- 231 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDN- 231 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEEC-
Confidence 368888876 566677666653 32 146666666 55565554 45422111 1111110 113568888731
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. ...+.++.+.|+|||.++.-
T Consensus 232 ----~g-----~~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 232 ----VG-----GEISDTVISQMNENSHIILC 253 (345)
T ss_pred ----CC-----cHHHHHHHHHhccCCEEEEE
Confidence 11 13468889999999999863
No 326
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=59.08 E-value=48 Score=34.04 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCccceeeehhhhccCCCCCChHHHHH-HHhhhhcCCcEEEEEeCh--------HHHHHHHHHHhccCceeEeecCC-CC
Q 026623 141 PRTYDLIHANGVFSLYENTCKPEDILL-EMDRILRPEGAVIFRDEV--------DALNKVRKFAEGMRWDTKMMDHE-DG 210 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~~~~L~-Em~RVLRPGG~lii~d~~--------~~~~~i~~~~~~~~W~~~~~~~~-~~ 210 (235)
.-++|||++.+=..-..--..+++.+. -+.++|.++|.+|+-.-- ..+..+-+..+.+.. ..++ ..
T Consensus 413 ~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l----~qT~~SS 488 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVEL----VQTQFSS 488 (675)
T ss_pred CCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEE----EECCCCC
Confidence 478999998544321100012344444 456899999999998522 234444444444433 3333 34
Q ss_pred CCCCceEEEEEeccccC
Q 026623 211 PLMPEKILIAVKQYWVG 227 (235)
Q Consensus 211 ~~~~e~~l~~~k~~w~~ 227 (235)
++-.|.+++++|.-=..
T Consensus 489 s~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 489 SFTSEVYLVFQKLKKFP 505 (675)
T ss_pred CCceEEEEEEecccCCC
Confidence 55789999999875444
No 327
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=58.66 E-value=33 Score=30.53 Aligned_cols=80 Identities=20% Similarity=0.124 Sum_probs=49.6
Q ss_pred Eeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623 85 VMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 85 VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~ 161 (235)
|.=+|+|. |.++.+|.+.+ ..|+..|.+ +.++.+.++|.+.......+ .-...|+|+.+--. ..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~----~~~~aDlVilavp~------~~ 69 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIERGLVDEASTDLS----LLKDCDLVILALPI------GL 69 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCcccccCCHh----HhcCCCEEEEcCCH------HH
Confidence 44467775 56888887765 358888887 77787878876432211111 11567888753221 13
Q ss_pred hHHHHHHHhhhhcCCc
Q 026623 162 PEDILLEMDRILRPEG 177 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG 177 (235)
...++.|+...++|+-
T Consensus 70 ~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 70 LLPPSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 4577888888887763
No 328
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=58.00 E-value=54 Score=30.09 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=60.4
Q ss_pred CceEeeeccccchHHHHHhc----CCCceeEEeecCcc-ccHHHHHH---c---Cc--cccccccccCCCCCCCccc--e
Q 026623 82 YRNVMDMNAGLGGFAAALES----PKSWVMNVVPTTAK-NTLGVIYE---R---GL--IGIYHDWCEGFSTYPRTYD--L 146 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~----~~~~~~~V~~~D~s-~~L~~~~~---R---gl--~~~~~~~~e~l~~~p~sFD--l 146 (235)
.....|+|.|+-.=++.|.+ .+ .....+|+|++ +.|....+ + ++ .+...+.|.+|...|+.=- .
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 56889999999976666654 33 23568899998 66653221 1 22 2222333455443342221 2
Q ss_pred eeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 147 IHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 147 V~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
++-.+.+-.+. ..+-..+|..+.-.|+||-+|.+-
T Consensus 158 ~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCC-hHHHHHHHHHHHhcCCCcceEEEe
Confidence 33344555542 223468999999999999999997
No 329
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=57.87 E-value=12 Score=33.37 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCc----------------ccccccc-ccCCCCC
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGL----------------IGIYHDW-CEGFSTY 140 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl----------------~~~~~~~-~e~l~~~ 140 (235)
+.+...+|||.=||.|.=+.-|+..| ..|+++..|..+....+.|| +..+|.. .+-|...
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~ 148 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP 148 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH
T ss_pred CCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc
Confidence 44434589999999997433333333 26888888766665555544 1122222 2224423
Q ss_pred CCccceeeehhhhccC
Q 026623 141 PRTYDLIHANGVFSLY 156 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~ 156 (235)
+++||+|...=+|.|-
T Consensus 149 ~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPER 164 (234)
T ss_dssp SS--SEEEE--S----
T ss_pred CCCCCEEEECCCCCCc
Confidence 4999999999999763
No 330
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=57.44 E-value=56 Score=29.65 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=50.2
Q ss_pred CceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCC-CC-CCccceeeehhh
Q 026623 82 YRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFS-TY-PRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~-~~-p~sFDlV~a~~v 152 (235)
..+||-.||| .|.++..+++. +.. .|+.++.+ .....+.+-|....+.. +.+.+. .. .+.||+++...
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~--~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~- 259 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGAS--RIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV- 259 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcC-
Confidence 4677777774 34455555543 421 25555555 55555555554222211 111111 12 36689886311
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.++.|.|+++|.++...
T Consensus 260 --------~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 260 --------GRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred --------CChHHHHHHHHHhhcCCeEEEEe
Confidence 11367889999999999998763
No 331
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=57.22 E-value=83 Score=28.85 Aligned_cols=134 Identities=16% Similarity=0.238 Sum_probs=67.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc--ccccccccCCCCC--CC-ccceeeeh---hh
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI--GIYHDWCEGFSTY--PR-TYDLIHAN---GV 152 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~--~~~~~~~e~l~~~--p~-sFDlV~a~---~v 152 (235)
..+++|+=||.|++...+...+.-+ +..+|+. ..+. .++.-.. ...+..-..+... +. .+|+++.. .-
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~--~~a~Eid~~a~~-ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEI--VFANEIDPPAVA-TYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeE--EEEEecCHHHHH-HHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 3589999999999998888766322 4455554 2222 1221111 1111111111111 12 78999873 33
Q ss_pred hccCC-------CCCChHHHHHHHhhhhcCCcEEEEEeChH--------HHHHHHHHHhc----cCceeEeecCCCCCCC
Q 026623 153 FSLYE-------NTCKPEDILLEMDRILRPEGAVIFRDEVD--------ALNKVRKFAEG----MRWDTKMMDHEDGPLM 213 (235)
Q Consensus 153 l~h~~-------~~~~~~~~L~Em~RVLRPGG~lii~d~~~--------~~~~i~~~~~~----~~W~~~~~~~~~~~~~ 213 (235)
|+..- .+..+..-+.++-..++| .+++-++.+ .++.|.+.+++ +.|.+-....=.-|+.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ 157 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQS 157 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCC
Confidence 33221 112233445555666788 666666543 22333333333 4444442222246678
Q ss_pred CceEEEE
Q 026623 214 PEKILIA 220 (235)
Q Consensus 214 ~e~~l~~ 220 (235)
+|++++.
T Consensus 158 ReRvfii 164 (328)
T COG0270 158 RERVFIV 164 (328)
T ss_pred ccEEEEE
Confidence 8888877
No 332
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=57.16 E-value=37 Score=30.53 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=53.8
Q ss_pred CceEeeeccccc--hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAGLG--GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+|.=+|+|.= .++..|...+. ...|+..|.+ +.++.+.+.|+..... ..+.-.-+..|+|+..---
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiavp~----- 76 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCVPV----- 76 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECCCH-----
Confidence 357788898873 46666766552 2367788887 6777777777532221 1111011567888752211
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEE
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.....++.++...++||..++..
T Consensus 77 -~~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 77 -GASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred -HHHHHHHHHHHhhCCCCCEEEeC
Confidence 12356777887788998866543
No 333
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=56.75 E-value=42 Score=29.97 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=49.2
Q ss_pred CceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC-C-CCCccceeeehhh
Q 026623 82 YRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS-T-YPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~-~-~p~sFDlV~a~~v 152 (235)
..+||-.||| .|.++..++.. +. ..|+.++.+ .....+.+.|....+. ++.+.+. . ..+.||+|+-. +
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~-~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKASGA--YPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM-S 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC-C
Confidence 4566666664 34455555543 32 125555555 5555555556422111 1111111 1 22568988741 1
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.++.+.|+++|.++..-
T Consensus 239 --------g~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 239 --------GAPKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred --------CCHHHHHHHHHhhcCCCEEEEEc
Confidence 11467899999999999988763
No 334
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=55.45 E-value=67 Score=27.50 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccc----ccCCC-C-CCCccceeeeh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW----CEGFS-T-YPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~----~e~l~-~-~p~sFDlV~a~ 150 (235)
...+||-.|| +.|..++.++.. +. .|+.++.+ +..+.+.+.|....+... .+.+. . ..+.+|+++..
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~ 215 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGA---RVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDP 215 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEEC
Confidence 3578999998 344444445443 43 35555555 666666666642222110 01111 1 12468887641
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. -...+.++.+.++++|.++..
T Consensus 216 ~----------g~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 216 V----------GGDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred c----------cHHHHHHHHHhhccCCEEEEE
Confidence 1 024566778899999988764
No 335
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=55.32 E-value=93 Score=28.62 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCCceEeeeccccch----HHHHHhc---CCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhh
Q 026623 80 RRYRNVMDMNAGLGG----FAAALES---PKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~----faa~L~~---~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~v 152 (235)
....+||-+|+|.-. =.+-|++ .+. -++-.|+.+.+ .+. ...+...|..+. .+..||+|++..-
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a---ilvDnDi~d~v---SDa--~~~~~~Dc~t~~-~~~k~DlIiSDmY 130 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA---ILVDNDIRDYV---SDA--DQSIVGDCRTYM-PPDKFDLIISDMY 130 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT----EEEEEESS--B----SS--SEEEES-GGGEE-ESS-EEEEEE---
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCc---EEEecchhhhc---ccc--CCceeccccccC-CCCcccEEEEecc
Confidence 346799999988642 1222332 221 24444442211 111 123344555444 4599999998554
Q ss_pred hc---cC----CCCCChH-HHHHHHhhhhcCCcEEEEEeChHHH-HHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623 153 FS---LY----ENTCKPE-DILLEMDRILRPEGAVIFRDEVDAL-NKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ 223 (235)
Q Consensus 153 l~---h~----~~~~~~~-~~L~Em~RVLRPGG~lii~d~~~~~-~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~ 223 (235)
=. +. ......- -+..=|..-|+=||.+.|--+...+ .++-+++..+.|..-.-..-+.+ ..|.+|++-.-
T Consensus 131 d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt~FcT~VNtS-SSEaFLigiNY 209 (299)
T PF06460_consen 131 DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWTCFCTAVNTS-SSEAFLIGINY 209 (299)
T ss_dssp -TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEEEEEGGGTT-SS-EEEEEEEE
T ss_pred cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEEEEecccCcc-ccceeEEeeec
Confidence 11 11 0111122 2333345678899999998654333 57788888888865433333333 67999998653
No 336
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=54.55 E-value=1.2e+02 Score=29.63 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCceEeeeccccchHHHHHhc---CCCceeEEeecCcc-ccHHHHHH----cCccc-cc-cccccCCCC---CC-Cccce
Q 026623 81 RYRNVMDMNAGLGGFAAALES---PKSWVMNVVPTTAK-NTLGVIYE----RGLIG-IY-HDWCEGFST---YP-RTYDL 146 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~---~~~~~~~V~~~D~s-~~L~~~~~----Rgl~~-~~-~~~~e~l~~---~p-~sFDl 146 (235)
+...|.|+-||+|+|...... .+.-...+++.+.. +|...+.. +|..+ ++ ......|.. .+ ..||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 346899999999998754322 11112356777776 55554332 33322 11 111122221 12 56888
Q ss_pred eeehhhhcc---------------------CCCCC-ChHHHHHHHhhhhcCCcE-EEEE
Q 026623 147 IHANGVFSL---------------------YENTC-KPEDILLEMDRILRPEGA-VIFR 182 (235)
Q Consensus 147 V~a~~vl~h---------------------~~~~~-~~~~~L~Em~RVLRPGG~-lii~ 182 (235)
|.++-=|.. +++.. .=-.++.-+..+|++||. .+|+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 887653321 01000 112677889999999997 3343
No 337
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=54.29 E-value=63 Score=28.79 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=51.4
Q ss_pred CCCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccccc---CCC--CCCCccceeeehh
Q 026623 80 RRYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE---GFS--TYPRTYDLIHANG 151 (235)
Q Consensus 80 ~~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e---~l~--~~p~sFDlV~a~~ 151 (235)
....+||=.|+|. |.++..+++. +. .+|+.++.+ +.++.+.+-|....+....+ .+. +..+.||+|+-..
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~--~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGA--EDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 3456777787753 2334444443 32 237777776 77777777674222211001 111 1124689887310
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.+..+.|+++|.+++.
T Consensus 240 ---------g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 ---------GNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred ---------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1135677888999999999865
No 338
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.34 E-value=53 Score=28.75 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc--ccccCCC--CCCCccceeeehhhh
Q 026623 81 RYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH--DWCEGFS--TYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~--~~~e~l~--~~p~sFDlV~a~~vl 153 (235)
+..+||=+|+|. |.+++.+++ .+. ..|+.+|.+ +.++.+.+-|....+. +..+.+. +..+.+|+|+-.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~--- 194 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF--- 194 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC---
Confidence 456888888753 334444544 332 236666766 7777777777522221 0001110 122468888631
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
. .-...+.+..+.|||||.+++.-
T Consensus 195 --~----G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 195 --S----GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred --C----CChHHHHHHHHHhcCCCEEEEec
Confidence 1 12467888999999999998753
No 339
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.14 E-value=1.2e+02 Score=26.10 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCccccHHHHHHcCccccccccccCC---CCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGF---STYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l---~~~p~sFDlV~a~~vl~ 154 (235)
...+||-.|| +.|.+++.++.. +. .|+.++.+.....+.+.|....+......+ ....+.+|+|+.... .
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~---~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~-~ 218 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGA---HVTGVCSTRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVG-N 218 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCHHHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCC-c
Confidence 4678999997 355566666553 43 455544335555666666422221111111 112367898875211 0
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
........+. .|+|+|.++...
T Consensus 219 ------~~~~~~~~~~-~l~~~g~~i~~g 240 (319)
T cd08267 219 ------SPFSLYRASL-ALKPGGRYVSVG 240 (319)
T ss_pred ------hHHHHHHhhh-ccCCCCEEEEec
Confidence 1123333333 399999998753
No 340
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.89 E-value=70 Score=28.40 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=48.9
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCccccHHHHHHcCccccccccccC----CC-CCCCccceeeehhh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEG----FS-TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~----l~-~~p~sFDlV~a~~v 152 (235)
...+||=.|+ +.|..+..+++. +. +++.++.++.+..+.+.|.. .+.+-.+. .. +..+.+|+|+..
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~---~vi~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~-- 250 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGA---IVIAVAGAAKEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADV-- 250 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCC---EEEEEeCchhhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEec--
Confidence 3568888887 344455555543 43 35555444555666665641 11110011 11 123568988741
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.|.|+++|.++..
T Consensus 251 --------~g~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 251 --------VGGPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred --------CCHHHHHHHHHHhccCCEEEEe
Confidence 1124688899999999999853
No 341
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=52.10 E-value=56 Score=29.64 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred CCceEeeeccc-cchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC-C-CCCccceeeehh
Q 026623 81 RYRNVMDMNAG-LGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS-T-YPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~-~-~p~sFDlV~a~~ 151 (235)
...+||=.|+| .|.++..+++ .+.. .++.++.+ +..+.+.+.|....+. ++.+.+. . ..+.||+|+.
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~--~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld-- 262 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGAS--PIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVE-- 262 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEE--
Confidence 34567755553 3344444444 3422 25555555 5555555555422221 1111111 1 1366898874
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
... . ...+.++.+.|+++|.++..
T Consensus 263 ---~vg---~-~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 263 ---ALG---K-PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred ---eCC---C-HHHHHHHHHHHhcCCEEEEE
Confidence 111 1 13788999999999999875
No 342
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=52.05 E-value=39 Score=30.96 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=46.6
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-cc-HHHHHHcCccccccccc-cCCCCCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NT-LGVIYERGLIGIYHDWC-EGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~-L~~~~~Rgl~~~~~~~~-e~l~~~p~sFDlV~a~~vl~h 155 (235)
...+||=.|||. |.++..+++. + ..++.++.+ +. ...+.+.|....+...- +.+.-..+.+|+|+- .
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid-----~ 254 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFG---LKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIID-----T 254 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEE-----C
Confidence 356788788753 3344455443 4 245555554 33 33444556422211000 011100124787763 1
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.+..+.|||||.+++.
T Consensus 255 ~----g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 255 V----SAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred C----CCHHHHHHHHHHhcCCcEEEEe
Confidence 1 1135788899999999999865
No 343
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=52.02 E-value=56 Score=29.83 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=52.7
Q ss_pred CceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCC-CCCCccceeeehhhh
Q 026623 82 YRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFS-TYPRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~-~~p~sFDlV~a~~vl 153 (235)
..+||=.|+|. |.++..+++. +. ..|+.+|.+ +.++++.+-|....+.. +.+.+. .-++.+|+|+-..
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~-- 267 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGA--SQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA-- 267 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC--
Confidence 45777788753 3455555543 32 247777777 77787777675332211 111111 0123588886311
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.+..+.|||||.+++.-
T Consensus 268 -------G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 -------GSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -------CChHHHHHHHHHHhcCCEEEEEc
Confidence 11367888899999999998753
No 344
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=51.46 E-value=62 Score=28.87 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCC--CCCCccceeeehh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFS--TYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~--~~p~sFDlV~a~~ 151 (235)
...+||=.|+|. |.++..+++. +. ..++.++.+ +.+.++.+.|.-..+ + ++.+.+. ...+.+|+|+...
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~ 240 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGA--RHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMS 240 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECC
Confidence 356777777653 4455555543 32 135555555 666666666642221 1 1111111 1235688886411
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.++.+.|+|+|.++...
T Consensus 241 ---------g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 241 ---------GAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred ---------CCHHHHHHHHHHHhcCCEEEEEe
Confidence 11468899999999999999874
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.37 E-value=56 Score=29.32 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC-----CC-CCCccceeeehh
Q 026623 81 RYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-----ST-YPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-----~~-~p~sFDlV~a~~ 151 (235)
...+||=.||| .|.+++.+++. +. ..++.++.+ +.+..+.+-|....+..-.+.+ .. ..+.+|+++-..
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGA--GRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 35677777776 33445555543 32 246677766 6677776666422221100111 01 125688886311
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.+.|+++|.++..
T Consensus 244 ---------g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 244 ---------GGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred ---------CCHHHHHHHHHHhhcCCEEEEe
Confidence 1136789999999999999865
No 346
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=49.32 E-value=1.2e+02 Score=26.50 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=48.8
Q ss_pred CCceEeeeccccchHHHH---Hhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAGLGGFAAA---LES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~---L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h 155 (235)
...+||=.|+ |.++.+ +++ .+. .++.++.+ +.++.+.+-|..... +. ... +..+.||+++-.
T Consensus 155 ~g~~vlV~g~--g~vg~~~~q~a~~~G~---~vi~~~~~~~~~~~~~~~g~~~~~-~~-~~~-~~~~~~d~vid~----- 221 (319)
T cd08242 155 PGDKVAVLGD--GKLGLLIAQVLALTGP---DVVLVGRHSEKLALARRLGVETVL-PD-EAE-SEGGGFDVVVEA----- 221 (319)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC---eEEEEcCCHHHHHHHHHcCCcEEe-Cc-ccc-ccCCCCCEEEEC-----
Confidence 3467777765 444433 333 343 35666655 677777665543222 11 111 233679988741
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
..-...+..+.+.|+++|.+++.
T Consensus 222 ----~g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 222 ----TGSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----CCChHHHHHHHHHhhcCCEEEEE
Confidence 11135778888999999999874
No 347
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=47.09 E-value=1e+02 Score=27.66 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred CceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCC-CCC-Cccceeeehhh
Q 026623 82 YRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFS-TYP-RTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~-~~p-~sFDlV~a~~v 152 (235)
..+||=.|+| .|.++..+++. +. ..|+.++.+ +.+..+.+.|....+ + ++.+.+. ..+ +.+|+|+-..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~--~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~- 249 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGA--SKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA- 249 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECC-
Confidence 4566666653 33444555543 32 146666666 666666555542211 1 1111111 112 4588886311
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.+.|++||.++..
T Consensus 250 --------g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 250 --------GVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred --------CCHHHHHHHHHhccCCCEEEEE
Confidence 1135788999999999998875
No 348
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=46.65 E-value=63 Score=28.79 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=47.3
Q ss_pred CceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+||=+|||. |.++..+++ .+.. .|+.+|.. +.++.+.+.+.+... +. ..+.||+|+-..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~~~~rl~~a~~~~~i~~~----~~---~~~g~Dvvid~~------- 208 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGS--PPAVWETNPRRRDGATGYEVLDPE----KD---PRRDYRAIYDAS------- 208 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHhhhhccccChh----hc---cCCCCCEEEECC-------
Confidence 45677778763 446666654 3432 24455655 555554432221110 10 125688887411
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEE
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.+..+.|||||.+++.
T Consensus 209 --G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 --GDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred --CCHHHHHHHHHhhhcCcEEEEE
Confidence 1135778889999999999965
No 349
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=46.22 E-value=34 Score=33.95 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcccccccccc----------C------------C
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCE----------G------------F 137 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e----------~------------l 137 (235)
+..+|+=+|||.=++++....+. ...+|+.+|.. +.++.+.+-|..-...+.-| . +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~-lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS-LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 45799999999887655443321 12358888888 77776665443211110000 0 1
Q ss_pred CCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEE
Q 026623 138 STYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVI 180 (235)
Q Consensus 138 ~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~li 180 (235)
+-.-..+|+|++.-.+. -+..+.-+..||-+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~Talip---G~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTALIP---GKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECcccC---CCCCCeeehHHHHhhCCCCCEEE
Confidence 10115799998866553 22233457899999999998876
No 350
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.37 E-value=69 Score=30.85 Aligned_cols=85 Identities=14% Similarity=0.010 Sum_probs=51.4
Q ss_pred CCceEeeeccccchHHHHH--hcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC
Q 026623 81 RYRNVMDMNAGLGGFAAAL--ESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L--~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
..++|+=+|||.=|.+.+. +..+ ++|+.+|.+ ..+..+.+-|..... .-+.+ ..+|+|+...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~~G~~~~~--~~e~v----~~aDVVI~at------ 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAMEGYEVMT--MEEAV----KEGDIFVTTT------ 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHhcCCEEcc--HHHHH----cCCCEEEECC------
Confidence 4679999999975543333 3334 367777776 566677776752111 11111 4679988621
Q ss_pred CCCChHHHHH-HHhhhhcCCcEEEEEe
Q 026623 158 NTCKPEDILL-EMDRILRPEGAVIFRD 183 (235)
Q Consensus 158 ~~~~~~~~L~-Em~RVLRPGG~lii~d 183 (235)
.. ..++. +..+.+||||.++..-
T Consensus 266 --G~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 266 --GN-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred --CC-HHHHHHHHHhcCCCCcEEEEeC
Confidence 11 24444 4588999999997663
No 351
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=44.95 E-value=1.3e+02 Score=27.98 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=59.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCC-CCCccceeeehhhhccCC-CC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFST-YPRTYDLIHANGVFSLYE-NT 159 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~-~p~sFDlV~a~~vl~h~~-~~ 159 (235)
.++||=+|--...|...|.... ..+.--+...........|....+ .-.++. .+..||+|+. ++| ++
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~f---~~~~~~~~~~~~d~~~~-----~~pk~k 88 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDAAS---VRVHTQQFHHWQVLSRQMGDNARF---SLVATAEDVADCDTLIY-----YWPKNK 88 (342)
T ss_pred CCcEEEEcCcchhhHHhhhccc---eEEehhhhHHHHHHHhhcCCceEe---ccccCCccCCCCCEEEE-----ECCCCH
Confidence 5688989988888888886322 123222233222222122311111 111221 2368998864 333 44
Q ss_pred CChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHHHhcc
Q 026623 160 CKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKFAEGM 198 (235)
Q Consensus 160 ~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~~~~~ 198 (235)
...+..|.++.+.|+|||.+++. ++..-++.+.++++++
T Consensus 89 ~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~ 128 (342)
T PRK09489 89 QEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADY 128 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHh
Confidence 45678999999999999999988 3444444445544443
No 352
>PRK08507 prephenate dehydrogenase; Validated
Probab=44.25 E-value=67 Score=28.33 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=48.1
Q ss_pred Eeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623 85 VMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 85 VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~ 161 (235)
|.=+|+|. |.++..|.+.+. ...|+..|.+ +.++.+.+.|.+....+..+ + .+ .|+|+..- +. ..
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~-~---~~-aD~Vilav-----p~-~~ 70 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIVSFEE-L---KK-CDVIFLAI-----PV-DA 70 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccCCHHH-H---hc-CCEEEEeC-----cH-HH
Confidence 44467765 457777776653 2357888887 66776777775422211111 1 13 78887522 21 24
Q ss_pred hHHHHHHHhhhhcCCcEEE
Q 026623 162 PEDILLEMDRILRPEGAVI 180 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~li 180 (235)
+..++.|+.. ++||..++
T Consensus 71 ~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHhc-cCCCCEEE
Confidence 5677788877 77776443
No 353
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=43.96 E-value=1.1e+02 Score=21.16 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=31.0
Q ss_pred HHHHHhhhhcCCcEE-EEEeChHHHHHHHHHHhccCceeEeecCC
Q 026623 165 ILLEMDRILRPEGAV-IFRDEVDALNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 165 ~L~Em~RVLRPGG~l-ii~d~~~~~~~i~~~~~~~~W~~~~~~~~ 208 (235)
.+++.-+-|.+|..+ ++.|.......|.++++...+++.....+
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~~ 60 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEEE 60 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEe
Confidence 334444556778776 66788888899999999999996655444
No 354
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=42.97 E-value=45 Score=27.97 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+++.|+++|. +...+ .....-|||||++++...
T Consensus 65 ~~~~D~lva~----------d~~~~-~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 65 EGQADLLLAL----------EPAEV-ARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCCCEEEEc----------CHHHH-HHHHhhcCCCcEEEEECC
Confidence 4899999982 32333 344556999999998853
No 355
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=42.70 E-value=77 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=21.8
Q ss_pred CccceeeehhhhccCCCCCChHHHHHH--HhhhhcCCcEEEEEeC
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLE--MDRILRPEGAVIFRDE 184 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~E--m~RVLRPGG~lii~d~ 184 (235)
...|+++|-. ..++.. ..+-|||||.+++...
T Consensus 65 ~~~D~lva~~-----------~~~~~~~~~~~~l~~gg~ii~d~~ 98 (177)
T TIGR02175 65 YEPDYVVVLD-----------PTLLKTVNVTAGLKEDGILIVNTK 98 (177)
T ss_pred CCCCEEEEcC-----------HHHhCccchhhCcCCCeEEEEECC
Confidence 7899999822 123322 4567999999998753
No 356
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.51 E-value=88 Score=26.95 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=50.0
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccc---ccCCCCCCCccceeeehhhh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW---CEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~---~e~l~~~p~sFDlV~a~~vl 153 (235)
...+||=.|+ +.|.++..+++. +. .|+.+..+ +....+.+.|....+... .+.+....+.+|+++..
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~--- 215 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGA---TVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLEL--- 215 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHhCCCceEEEEC---
Confidence 3467777776 455666666553 43 35555544 555566555642211110 01111114568888641
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.++.+.|+++|.++..
T Consensus 216 -------~~~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 -------VGTATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred -------CChHHHHHHHHHhccCCEEEEE
Confidence 1125688999999999999865
No 357
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=42.39 E-value=2.8 Score=35.14 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=43.7
Q ss_pred ceEeeeccccchHHHHHhc----CCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 83 RNVMDMNAGLGGFAAALES----PKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 83 r~VLD~GCG~G~faa~L~~----~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
.-||++|=|.|..=-.|++ +.+||.+-.-...++..+- .++-+.|.+.+-...++++....-++|+....++-..
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~-~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~ 108 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPP-EEDLILGDIRETLPALARFGAGAALAHADIGTGDKEK 108 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHH
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCc-hHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcch
Confidence 4799999999976666654 4455443221111111111 1232334333211223345567778888777764311
Q ss_pred CCChH-HHHHHHhhhhcCCcEEEEEeChH
Q 026623 159 TCKPE-DILLEMDRILRPEGAVIFRDEVD 186 (235)
Q Consensus 159 ~~~~~-~~L~Em~RVLRPGG~lii~d~~~ 186 (235)
..... .+=-=|..+|.|||+++-.+..+
T Consensus 109 d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 109 DDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred hHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 00011 22234688999999988776543
No 358
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=42.12 E-value=13 Score=34.13 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=26.5
Q ss_pred cccccchHHHHHHHHHHHHHhhhhC---CCCCceEeeeccccchH
Q 026623 54 KSYQEDSKLWKKHVNAYKKMNSLIG---TRRYRNVMDMNAGLGGF 95 (235)
Q Consensus 54 ~~f~~d~~~W~~~v~~y~~~l~~l~---~~~~r~VLD~GCG~G~f 95 (235)
..|+...+.|--.+.-...+...++ ...+.+|||+|||.|--
T Consensus 86 ~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp 130 (282)
T KOG2920|consen 86 GVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALP 130 (282)
T ss_pred ceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCccccc
Confidence 3578888888766663222222220 12467999999999953
No 359
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.98 E-value=1.7e+02 Score=25.17 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=50.7
Q ss_pred CCceEeeecc--ccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC
Q 026623 81 RYRNVMDMNA--GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
...+||=.|+ +.|.++..++... ..++..++.+ +.+..+.+.|....+.. .+.+. ++.+|+++-. ..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~--~~~~d~vl~~-----~g 201 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALA--GAHVVAVVGSPARAEGLRELGAAEVVVG-GSELS--GAPVDLVVDS-----VG 201 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCcEEEec-ccccc--CCCceEEEEC-----CC
Confidence 3678888887 4555555555432 1346666555 66666666664211111 01111 2568888641 11
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 158 NTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 158 ~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
...+.+..+.|+++|.++..
T Consensus 202 -----~~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 202 -----GPQLARALELLAPGGTVVSV 221 (305)
T ss_pred -----cHHHHHHHHHhcCCCEEEEE
Confidence 24678899999999999865
No 360
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=40.97 E-value=39 Score=31.24 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.7
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEeChHH
Q 026623 161 KPEDILLEMDRILRPEGAVIFRDEVDA 187 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d~~~~ 187 (235)
.++.+|..+-.+|+|||.+++-.-+..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 356899999999999999999876654
No 361
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=40.68 E-value=1e+02 Score=28.00 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCC-CCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFS-TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~-~~p~sFDlV~a~~v 152 (235)
...+||=.|+|. |.++..+++. +. ..++.++.+ ..+.++.+-|....+.. ..+.+. ...+.||+|+-..
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~--~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~- 262 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGC--TTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTT- 262 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECC-
Confidence 356788887753 4444445443 32 137777776 66666666554211110 111111 0135688886311
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.++.+.|+++|.++..-
T Consensus 263 --------g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 263 --------GVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred --------CCcHHHHHHHHHhccCCEEEEeC
Confidence 11367899999999999999753
No 362
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=40.25 E-value=1.7e+02 Score=24.86 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCceEeeecc--ccchHHHHHhc-CCCceeEEeecCccccHHHHHHcCccccccccccCCC--CCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFS--TYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~--~~p~sFDlV~a~~vl~h 155 (235)
...+||=.|+ +.|..++.++. .+. .++.++.++....+.+.|....+......+. ...+.+|+++. .
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~-----~ 215 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGA---RVIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLD-----T 215 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC---EEEEEecchhHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEE-----C
Confidence 3567777776 24444444443 343 3433333334455545453122111001111 12356888864 1
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. -...+.++.+.|+++|.++..
T Consensus 216 ~-----~~~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 216 V-----GGETLARSLALVKPGGRLVSI 237 (309)
T ss_pred C-----chHHHHHHHHHHhcCcEEEEE
Confidence 1 124778888999999999865
No 363
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=40.13 E-value=77 Score=29.54 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=39.5
Q ss_pred HhhhhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc
Q 026623 73 MNSLIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER 124 (235)
Q Consensus 73 ~l~~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R 124 (235)
++..|...+....+|.==|.||.+.++.++..-...++++|-- ..+..+.++
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 3444555556789999999999999999864334569999998 888887765
No 364
>PLN02827 Alcohol dehydrogenase-like
Probab=39.43 E-value=42 Score=31.02 Aligned_cols=91 Identities=9% Similarity=-0.037 Sum_probs=50.9
Q ss_pred CCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--c----ccccCCC-CCCCccceeeeh
Q 026623 81 RYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H----DWCEGFS-TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~----~~~e~l~-~~p~sFDlV~a~ 150 (235)
...+||=.|||. |.++..+++ .+. ..|+.++.+ +.++.+.+-|....+ + ++.+.+. ...+.+|+|+-.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~--~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGA--SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 357888888743 234444443 342 246677766 777777777752221 1 1111111 012358887631
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPE-GAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~ 182 (235)
. .-...+.+..+.|||| |.+++-
T Consensus 271 -----~----G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 271 -----V----GDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred -----C----CChHHHHHHHHhhccCCCEEEEE
Confidence 1 1135678888999999 999864
No 365
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=38.78 E-value=88 Score=27.53 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=47.3
Q ss_pred CceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+||=.|||. |.++..+++ .+ .+|+.++.+ +..+.+.+-|....+. ..+ . ..+.+|+++...
T Consensus 168 ~~~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~-~--~~~~vD~vi~~~------- 233 (329)
T cd08298 168 GQRLGLYGFGASAHLALQIARYQG---AEVFAFTRSGEHQELARELGADWAGD-SDD-L--PPEPLDAAIIFA------- 233 (329)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CeEEEEcCChHHHHHHHHhCCcEEec-cCc-c--CCCcccEEEEcC-------
Confidence 44566566542 223333433 34 356666555 5666665556421111 111 1 235688876311
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
.-...+.++.|.|+++|.+++..
T Consensus 234 --~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 --PVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred --CcHHHHHHHHHHhhcCCEEEEEc
Confidence 11367899999999999999753
No 366
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=38.49 E-value=21 Score=32.94 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=30.0
Q ss_pred CceEeeeccccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH----c-Cc---ccccc--cc---ccCCCCCCCccce
Q 026623 82 YRNVMDMNAGLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE----R-GL---IGIYH--DW---CEGFSTYPRTYDL 146 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~----R-gl---~~~~~--~~---~e~l~~~p~sFDl 146 (235)
..++||||+|.--.-.-|..+ ..| ++++.|+. ..+..|.+ . +| |...+ +. ...+-...+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 458999999998543333221 237 57888876 55554332 2 33 22211 11 1112112378999
Q ss_pred eeehhhhc
Q 026623 147 IHANGVFS 154 (235)
Q Consensus 147 V~a~~vl~ 154 (235)
..|+==|+
T Consensus 181 tmCNPPFy 188 (299)
T PF05971_consen 181 TMCNPPFY 188 (299)
T ss_dssp EEE-----
T ss_pred EecCCccc
Confidence 99987776
No 367
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=38.01 E-value=1.8e+02 Score=25.07 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=46.9
Q ss_pred CCceEeeeccc--cchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceeeeh
Q 026623 81 RYRNVMDMNAG--LGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG--~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~a~ 150 (235)
...+||=.|++ .|..++.++. .+. +++.++.+ +.++.+.+.|....+. +..+.+. +..+.+|+++.+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 242 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGA---TVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEH 242 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEEC
Confidence 35678877764 4555555544 342 35555555 5555554444311110 0001110 112468888752
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. ...+.++.+.|+|+|.++..
T Consensus 243 ~g----------~~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 243 VG----------AATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred Cc----------HHHHHHHHHHhhcCCEEEEE
Confidence 11 24567788999999998865
No 368
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=37.96 E-value=1e+02 Score=27.59 Aligned_cols=91 Identities=15% Similarity=0.156 Sum_probs=49.4
Q ss_pred CCceEeeeccccch-HHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--cc-cccCCC--CCCCccc-eeeehh
Q 026623 81 RYRNVMDMNAGLGG-FAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD-WCEGFS--TYPRTYD-LIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG~G~-faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~-~~e~l~--~~p~sFD-lV~a~~ 151 (235)
...+||=.|||.=+ ++..+++ .+. ..|+.++.+ +.++.+.+-|....+ +. ..+.+- +....+| +|+-
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d-- 235 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILE-- 235 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEE--
Confidence 35678888875433 3344444 342 235666766 677777666642221 10 000000 1124566 5431
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
- ..-...+.+..+.|||||.+++-
T Consensus 236 ---~----~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 236 ---T----AGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred ---C----CCCHHHHHHHHHHhhcCCEEEEE
Confidence 1 11246889999999999999986
No 369
>PLN02256 arogenate dehydrogenase
Probab=37.43 E-value=1.4e+02 Score=27.34 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=55.1
Q ss_pred hhCCCCCceEeeecccc--chHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhh
Q 026623 76 LIGTRRYRNVMDMNAGL--GGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl 153 (235)
.+......+|.=+|+|. |.++..|.+.+ ..|+++|.+.....+.+.|... +.+ .+.+ .....|+|+..
T Consensus 30 ~~~~~~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~~~~~~a~~~gv~~-~~~-~~e~--~~~~aDvVila--- 99 (304)
T PLN02256 30 ELEKSRKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRSDYSDIAAELGVSF-FRD-PDDF--CEEHPDVVLLC--- 99 (304)
T ss_pred hhccCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECccHHHHHHHcCCee-eCC-HHHH--hhCCCCEEEEe---
Confidence 34444566788889884 34777777655 2576776664334444445321 111 1111 12346887651
Q ss_pred ccCCCCCChHHHHHHH-hhhhcCCcEEEEEeCh---HHHHHHHHHH
Q 026623 154 SLYENTCKPEDILLEM-DRILRPEGAVIFRDEV---DALNKVRKFA 195 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em-~RVLRPGG~lii~d~~---~~~~~i~~~~ 195 (235)
.+. ..+..++.|+ ...++||. +++.-.. ..++.+++.+
T Consensus 100 --vp~-~~~~~vl~~l~~~~l~~~~-iviDv~SvK~~~~~~~~~~l 141 (304)
T PLN02256 100 --TSI-LSTEAVLRSLPLQRLKRST-LFVDVLSVKEFPKNLLLQVL 141 (304)
T ss_pred --cCH-HHHHHHHHhhhhhccCCCC-EEEecCCchHHHHHHHHHhC
Confidence 111 2356777777 45577765 4444322 3455555554
No 370
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.13 E-value=2.2e+02 Score=24.84 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=50.3
Q ss_pred eEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHHHHHcCcc---ccccccccCCCCC-C-Cccceeeehhhhcc
Q 026623 84 NVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGVIYERGLI---GIYHDWCEGFSTY-P-RTYDLIHANGVFSL 155 (235)
Q Consensus 84 ~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~---~~~~~~~e~l~~~-p-~sFDlV~a~~vl~h 155 (235)
+|.=+|||.-| ++..|.+.+ .+|+.++-. +.++.+.+.|+. +....-....... + ..+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~---- 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAV---- 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEec----
Confidence 46667887643 566666654 256666664 556666666652 1110000001111 1 6788887521
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
...+...++.++...|.++..+++.
T Consensus 75 --k~~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 75 --KAYQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred --ccccHHHHHHHHhhhcCCCCEEEEe
Confidence 1125678899998888887666654
No 371
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=37.12 E-value=27 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=20.1
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcC
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESP 102 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~ 102 (235)
.++.++....+|+|.|.|+...+++..
T Consensus 187 El~~g~~D~F~DLGSGVGqlv~~~aa~ 213 (419)
T KOG3924|consen 187 ELKLGPADVFMDLGSGVGQLVCFVAAY 213 (419)
T ss_pred HhccCCCCcccCCCcccchhhHHHHHh
Confidence 345556778999999999876666553
No 372
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=36.25 E-value=14 Score=28.95 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=11.4
Q ss_pred eeeccccchH-HHHHhc
Q 026623 86 MDMNAGLGGF-AAALES 101 (235)
Q Consensus 86 LD~GCG~G~f-aa~L~~ 101 (235)
+|||||.|.- .+++..
T Consensus 7 IDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRS 23 (124)
T ss_pred cccccCCCcchhhhhhc
Confidence 6999999974 444443
No 373
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=35.94 E-value=1.1e+02 Score=26.75 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeec-CccccHHHHHHcCccccccccccCC----C--CCCCccceeeeh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPT-TAKNTLGVIYERGLIGIYHDWCEGF----S--TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~-D~s~~L~~~~~Rgl~~~~~~~~e~l----~--~~p~sFDlV~a~ 150 (235)
...+||=.|+ +.|.++..+++. +. +++.+ +..+....+.+.|....+....+.+ . +..+.+|+|+-.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~ 215 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGI---NVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDS 215 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEEC
Confidence 3567777775 256666666653 43 33333 3334455555555421111100111 0 122568988741
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. ...+.+..+.|+++|.++..
T Consensus 216 -----~g-----~~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 216 -----VG-----GKLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred -----CC-----ChhHHHHHHhhcCCcEEEEE
Confidence 11 13567889999999999864
No 374
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=34.76 E-value=87 Score=26.21 Aligned_cols=107 Identities=11% Similarity=0.167 Sum_probs=54.3
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccC--CC-CCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEG--FS-TYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~--l~-~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+|+=|||=+-.. +|.+......++.-.|.-..-..-...+.. ..|--++ +| .+.++||+|++.==| +..
T Consensus 26 ~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~--fyD~~~p~~~~~~l~~~~d~vv~DPPF--l~~ 99 (162)
T PF10237_consen 26 DTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQFGGDEFV--FYDYNEPEELPEELKGKFDVVVIDPPF--LSE 99 (162)
T ss_pred CCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHhcCCcceE--ECCCCChhhhhhhcCCCceEEEECCCC--CCH
Confidence 56899999877544 454411113456666654211111111111 1222222 22 234899999983222 111
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEEeChHHHHHHHHHH
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFRDEVDALNKVRKFA 195 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~~ 195 (235)
.| ++.+..=+.-++||++.++++....+...|++++
T Consensus 100 ec-~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 100 EC-LTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL 135 (162)
T ss_pred HH-HHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh
Confidence 00 1233344445558889999998776655666665
No 375
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=34.69 E-value=90 Score=27.99 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHhhhhCCCCCceEeeeccccchHHHHH--hcCCCceeEEeecCcc-ccHHHHHH
Q 026623 70 YKKMNSLIGTRRYRNVMDMNAGLGGFAAAL--ESPKSWVMNVVPTTAK-NTLGVIYE 123 (235)
Q Consensus 70 y~~~l~~l~~~~~r~VLD~GCG~G~faa~L--~~~~~~~~~V~~~D~s-~~L~~~~~ 123 (235)
|.+-+..+.....-.+-|=+||.|.+.--| ...+ -..+|.+.|+. ++|+.+..
T Consensus 40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~-~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR-RLRRVYASDIDEDALELARK 95 (246)
T ss_dssp HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG-GEEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH-HHHhHhcccCCHHHHHHHHH
Confidence 444444444444568999999999875443 3322 24689999998 88886544
No 376
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=34.22 E-value=2.2e+02 Score=24.06 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=49.2
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccccc----ccCCC--CCCCccceeeeh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDW----CEGFS--TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~----~e~l~--~~p~sFDlV~a~ 150 (235)
...+||=.|+ +.|..+..++.. +. .++.++.+ +..+.+.+.|.-..++.. .+.+. +..+.+|+|+..
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~ 212 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGA---TVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDG 212 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEEC
Confidence 3467887774 345555555543 43 45555555 666666666642222110 01111 123568888741
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. ...+.+..+.|+++|.++..
T Consensus 213 -----~~-----~~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 213 -----VG-----KDTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred -----CC-----cHhHHHHHHhhccCcEEEEE
Confidence 11 24677888999999998865
No 377
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=34.08 E-value=39 Score=33.39 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=18.8
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCc
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTA 114 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~ 114 (235)
.--|||+|.|||-+...-...+ +-.|+++..
T Consensus 67 kv~vLdigtGTGLLSmMAvrag--aD~vtA~Ev 97 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG--ADSVTACEV 97 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc--CCeEEeehh
Confidence 3469999999997654433333 123555544
No 378
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=33.60 E-value=60 Score=29.81 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEeChHH
Q 026623 161 KPEDILLEMDRILRPEGAVIFRDEVDA 187 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d~~~~ 187 (235)
.++.+|.....+|+|||.+++-.-+..
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSl 240 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSL 240 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 356899999999999999999876543
No 379
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=33.47 E-value=1.8e+02 Score=25.86 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=48.5
Q ss_pred CCceEeeeccc-cchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccc-cCCC-----CCCCccceeeehh
Q 026623 81 RYRNVMDMNAG-LGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC-EGFS-----TYPRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~-e~l~-----~~p~sFDlV~a~~ 151 (235)
...+||=.||| .|.++..+++ .+ ..|+.++.+ +....+.+.|....+..-. +.+. ..++.+|+++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~- 240 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALG---ARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDA- 240 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEc-
Confidence 34577777753 2334444444 34 346666555 6666666656422221100 0110 112368888741
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. -...+.+..|.|+++|.++..
T Consensus 241 ----~g----~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 241 ----LG----IPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred ----CC----CHHHHHHHHHHhhcCCEEEEe
Confidence 10 135788899999999998864
No 380
>PRK11524 putative methyltransferase; Provisional
Probab=33.11 E-value=49 Score=29.62 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=32.6
Q ss_pred CCCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc
Q 026623 78 GTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER 124 (235)
Q Consensus 78 ~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R 124 (235)
....+..|||-=||+|+.+.+=...+ .+..++|++ +..+++.+|
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 34567899999999997654443332 357899998 888888888
No 381
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=33.01 E-value=1.5e+02 Score=24.07 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=32.5
Q ss_pred cceee-ehhhhccCCCCCChHHHHHHHhhhhc---CCcEEEEEeChHHHHHHHHHHhccCceeEee
Q 026623 144 YDLIH-ANGVFSLYENTCKPEDILLEMDRILR---PEGAVIFRDEVDALNKVRKFAEGMRWDTKMM 205 (235)
Q Consensus 144 FDlV~-a~~vl~h~~~~~~~~~~L~Em~RVLR---PGG~lii~d~~~~~~~i~~~~~~~~W~~~~~ 205 (235)
+|+.+ .+-...|+....+++.+..+..++++ |||.+|+....+ .+...+...+.++..+
T Consensus 72 p~i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~---~~~~~~~~~~~~v~~~ 134 (188)
T PF08245_consen 72 PDIAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDP---ELAEIAANSKCKVITF 134 (188)
T ss_dssp ESEEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSH---HHHHHHHHHTTTEEEE
T ss_pred hheeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCH---HHHHHHHhcCCcEEEe
Confidence 44433 44444576544567777777666655 899999995443 2334444444444433
No 382
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=32.81 E-value=77 Score=30.65 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCceEeeeccc-cchH-HHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCCCccceeeehhhhcc-CC
Q 026623 81 RYRNVMDMNAG-LGGF-AAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSL-YE 157 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~f-aa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h-~~ 157 (235)
...+||=+|+| .|.+ +.+|..+++-.+-|..-........+.+-| +.+... +.++.+=+.+|+|+++..=.| +-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~--~~~~~l-~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG--AEAVAL-EELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC--CeeecH-HHHHHhhhhCCEEEEecCCCcccc
Confidence 56789999999 8865 567777776555555554444455555555 222111 234434489999998644433 22
Q ss_pred CCCChHHHHHHHhh
Q 026623 158 NTCKPEDILLEMDR 171 (235)
Q Consensus 158 ~~~~~~~~L~Em~R 171 (235)
....++.++..-+|
T Consensus 254 ~~~~ve~a~~~r~~ 267 (414)
T COG0373 254 TREMVERALKIRKR 267 (414)
T ss_pred CHHHHHHHHhcccC
Confidence 33445555555444
No 383
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=32.63 E-value=61 Score=26.49 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=27.5
Q ss_pred CCCC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 138 STYP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 138 ~~~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
+.++ +.+|++++ | + ...+.....-|||||++++....
T Consensus 51 ~~~~~~~~Dilv~---l-------~-~~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 51 PSPPVGEADILVA---L-------D-PEALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp SSS-TSSESEEEE---S-------S-HHHHHHCGTTCETTEEEEEETTT
T ss_pred cCcccCCCCEEEE---c-------C-HHHHHHHhcCcCcCeEEEEECCC
Confidence 3455 89999998 1 3 25555888889999999999743
No 384
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=32.51 E-value=85 Score=26.32 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=22.1
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+..|++++ .+...+.+ ...-|||||++++..
T Consensus 63 ~~~Dilva----------ld~~~~~~-~~~~l~~~g~ii~n~ 93 (189)
T TIGR03334 63 GGADLLLA----------FEPLEALR-YLPYLSEGGEVILNT 93 (189)
T ss_pred CCCCEEEE----------eCHHHHHH-HHHhcCCCcEEEEeC
Confidence 89999998 23344443 344589999999885
No 385
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=32.18 E-value=74 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=22.5
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+..|+|+|. +... +.+...-|||||.+++...
T Consensus 67 ~~~D~lva~----------d~~~-~~~~~~~lk~gg~ii~n~~ 98 (197)
T PRK06853 67 GKADLLLAF----------EPLE-ALRYLPYLKKGGKVVVNTQ 98 (197)
T ss_pred CCCCEEEEe----------CHHH-HHHHHHhcCCCcEEEEECC
Confidence 489999982 2222 3455566899999999853
No 386
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=32.14 E-value=1.1e+02 Score=28.48 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=38.3
Q ss_pred CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe-ChHHHHHHHHHHhccCc
Q 026623 141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD-EVDALNKVRKFAEGMRW 200 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d-~~~~~~~i~~~~~~~~W 200 (235)
++.||+|+. ..-+++...+.-|.++.+.|.|||.+++.- +.+-...+++++.+.-+
T Consensus 35 ~~~~d~~l~----~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~ 91 (300)
T COG2813 35 PDDFDAVLL----YWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGG 91 (300)
T ss_pred cCCCCEEEE----EccCchHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcC
Confidence 468999864 222355567899999999999999998873 44445555555554433
No 387
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=32.01 E-value=60 Score=26.70 Aligned_cols=41 Identities=22% Similarity=0.079 Sum_probs=26.1
Q ss_pred CCCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHH
Q 026623 79 TRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIY 122 (235)
Q Consensus 79 ~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~ 122 (235)
..++..|||-=||+|+.+.+-...+ .+..++|.+ ....+|.
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhc
Confidence 3457899999999998655554443 357888888 6555553
No 388
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=31.83 E-value=1.3e+02 Score=26.23 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=49.1
Q ss_pred CceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--cc-cccCCCCC-CCccceeeehhhh
Q 026623 82 YRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD-WCEGFSTY-PRTYDLIHANGVF 153 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~-~~e~l~~~-p~sFDlV~a~~vl 153 (235)
..+||=.|+ +.|.++..+++ .+. .|+.++.+ +.++.+.+-|....+ ++ ..+.+.-. .+.+|+|+-
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld---- 219 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGY---EVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVD---- 219 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---eEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEE----
Confidence 457887886 34455555554 343 45555555 666666665641111 11 01111111 255888753
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. -...+.+..+.|+++|.++..
T Consensus 220 -~~-----g~~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 220 -PV-----GGKTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred -CC-----cHHHHHHHHHHhhcCCEEEEE
Confidence 11 125688899999999999886
No 389
>PRK13699 putative methylase; Provisional
Probab=31.32 E-value=56 Score=28.53 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=30.3
Q ss_pred CCCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHc
Q 026623 80 RRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYER 124 (235)
Q Consensus 80 ~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R 124 (235)
..+..|||-=||+|+.+.+-...+ .+..+++++ ...+++.+|
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 356789999999998766555443 357788888 666666665
No 390
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=31.30 E-value=60 Score=30.14 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=27.0
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEeChHHHHH-HHHHHhc
Q 026623 161 KPEDILLEMDRILRPEGAVIFRDEVDALNK-VRKFAEG 197 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d~~~~~~~-i~~~~~~ 197 (235)
.++.+|..+-.+|+|||.+++-.-+..-++ ++.+.+.
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~ 256 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRE 256 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHH
Confidence 356899999999999999999887654333 3333443
No 391
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=30.61 E-value=3.7e+02 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=23.5
Q ss_pred CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 142 RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+.+|+++-.. .-...+.++.+.|+++|.++..
T Consensus 232 ~~vd~vld~~---------g~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 232 DGADVVIECS---------GAVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCCCEEEECC---------CChHHHHHHHHHhhcCCEEEEE
Confidence 5688876411 0136888999999999999975
No 392
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=30.39 E-value=57 Score=30.63 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCceEeeeccc-cchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccccc--cCCCCCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAG-LGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWC--EGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~--e~l~~~p~sFDlV~a~~vl~h 155 (235)
...+|+=+|+| .|..++..+. .+ ++|+.+|.+ +.++.+.+..-........ +.+.-.-..+|+|++.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~- 241 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG---ATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP- 241 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC-
Confidence 34678889988 3444444443 34 368888876 5444433221110000000 11111115789998743221
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii 181 (235)
....+.-+-.|+-+-+|||+.++-
T Consensus 242 --g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 242 --GAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred --CCCCCcCcCHHHHhcCCCCCEEEE
Confidence 100111233667777899987664
No 393
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=29.95 E-value=69 Score=32.06 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=50.4
Q ss_pred cccchHHHHHhc----CCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC---CC-CccceeeehhhhccCCCCC
Q 026623 90 AGLGGFAAALES----PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST---YP-RTYDLIHANGVFSLYENTC 160 (235)
Q Consensus 90 CG~G~faa~L~~----~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~---~p-~sFDlV~a~~vl~h~~~~~ 160 (235)
||+|.++..+.+ .+ .+++.+|.. +.++.+.+.|....+ .++.+... -. +..|++++ -..+ .
T Consensus 406 ~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~g~~v~~-GDat~~~~L~~agi~~A~~vv~-----~~~d-~ 475 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANK---MRITVLERDISAVNLMRKYGYKVYY-GDATQLELLRAAGAEKAEAIVI-----TCNE-P 475 (601)
T ss_pred ecCchHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhCCCeEEE-eeCCCHHHHHhcCCccCCEEEE-----EeCC-H
Confidence 677776665543 33 368888887 778877777754333 32222111 22 56777665 1112 1
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEe
Q 026623 161 KPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d 183 (235)
+-...+.++-|-+.|...++.+-
T Consensus 476 ~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 476 EDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe
Confidence 23345667778889999999884
No 394
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=29.92 E-value=2.2e+02 Score=25.52 Aligned_cols=91 Identities=19% Similarity=0.065 Sum_probs=48.5
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCC---------CCCCccceee
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFS---------TYPRTYDLIH 148 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~---------~~p~sFDlV~ 148 (235)
...+||=.|+|. |.++..+++. +. .+|+.++.+ +....+.+-|....+......++ +..+.||+|+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~--~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGA--RRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 355677777532 2233344433 32 156666666 66666655564222110000010 1125688887
Q ss_pred ehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 149 ANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 149 a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-.. .-...+.+..+.|+++|.+++.
T Consensus 255 d~~---------g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 255 EAS---------GHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred ECC---------CChHHHHHHHHHhccCCEEEEE
Confidence 311 1135788899999999999865
No 395
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=29.73 E-value=2.5e+02 Score=21.30 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHcCccc-cccccccCCCCCCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 120 VIYERGLIG-IYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 120 ~~~~Rgl~~-~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+..++|+.. .-+.-....+.+...+|+++++. .+..|+..+.. |++++..+
T Consensus 25 ~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~------------~l~~~~~~~~~--~~v~~~~~ 76 (93)
T COG3414 25 VLKELGIDVDVEQCAVDEIKALTDGADIIVTST------------KLADEFEDIPK--GYVVITGN 76 (93)
T ss_pred HHHHcCCCceeeeEEecccccCCCcccEEEEeh------------HhhhhcCcCCC--ceEEEEcc
Confidence 355666632 22222344566778999999833 33344433333 88888753
No 396
>PLN02740 Alcohol dehydrogenase-like
Probab=29.53 E-value=1.2e+02 Score=27.94 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=51.4
Q ss_pred CCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--cc----cccCCC-CCCCccceeeeh
Q 026623 81 RYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD----WCEGFS-TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~----~~e~l~-~~p~sFDlV~a~ 150 (235)
...+||=.|||. |.++..+++ .+. ..|+.+|.+ +.++.+.+-|....+ ++ +.+.+- ...+.||+|+-.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGA--SKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--CcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 356788888753 234444444 332 247777777 788888776753222 11 111111 011358888631
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPE-GAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~ 182 (235)
..-...+.+..+.+|+| |.+++.
T Consensus 276 ---------~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 276 ---------AGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred ---------CCChHHHHHHHHhhhcCCCEEEEE
Confidence 11236778888899997 887765
No 397
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.53 E-value=2.2e+02 Score=25.01 Aligned_cols=102 Identities=14% Similarity=0.216 Sum_probs=53.9
Q ss_pred eEeeeccccch--HHHHHhcCCCceeEEeecCccccHHHHHHcCccccccc-c-------ccCCCCCCCccceeeehhhh
Q 026623 84 NVMDMNAGLGG--FAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHD-W-------CEGFSTYPRTYDLIHANGVF 153 (235)
Q Consensus 84 ~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~-~-------~e~l~~~p~sFDlV~a~~vl 153 (235)
+|+=+|+|.-+ ++..|.+.+. +|+.++-++.++.+.+.|+.-...+ . +.........+|+|+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vila--- 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR---DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILA--- 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC---ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEE---
Confidence 46667888754 5666776542 4555554545555666665211000 0 00011012678877641
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHH
Q 026623 154 SLYENTCKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKF 194 (235)
Q Consensus 154 ~h~~~~~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~ 194 (235)
. ....++.++.++...++++..++.. ......+.+++.
T Consensus 76 --v-k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~ 114 (305)
T PRK12921 76 --V-KAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPY 114 (305)
T ss_pred --e-cccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHh
Confidence 1 1125678999998888887665543 333333444443
No 398
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.45 E-value=84 Score=28.77 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=73.1
Q ss_pred hhCCCCCceEeeeccccchHHHHHhcCCCceeEEeecCccccHHH----HHHcCc--------c--ccc-cccccCCCC-
Q 026623 76 LIGTRRYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGV----IYERGL--------I--GIY-HDWCEGFST- 139 (235)
Q Consensus 76 ~l~~~~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~----~~~Rgl--------~--~~~-~~~~e~l~~- 139 (235)
.+..+ .+.|.=+|||.=.-+-.|-... .+.|..+|.++++++ ..++|. + ... .+|+++|+.
T Consensus 88 ~~~~g-~~qvViLgaGLDTRayRl~~~~--~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~ 164 (297)
T COG3315 88 ALDAG-IRQVVILGAGLDTRAYRLDWPK--GTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAA 164 (297)
T ss_pred HHHhc-ccEEEEeccccccceeecCCCC--CCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhc
Confidence 46666 8999999999998876665443 467999999988774 334442 1 112 677777762
Q ss_pred -CC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 140 -YP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 140 -~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|+ +.-=++++-.+|.+++. .....+|.-+.-.+.||-.++...
T Consensus 165 G~d~~~pt~~iaEGLl~YL~~-~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYLPE-EAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCCcCCCeEEEeccccccCCH-HHHHHHHHHHHHhCCCCceEEEec
Confidence 33 55557889999999853 456677777887777777777664
No 399
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=29.34 E-value=2.1e+02 Score=25.52 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=46.3
Q ss_pred CceEeeeccc-cchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC-CCCCCccceeeehhhhccCCC
Q 026623 82 YRNVMDMNAG-LGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-STYPRTYDLIHANGVFSLYEN 158 (235)
Q Consensus 82 ~r~VLD~GCG-~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-~~~p~sFDlV~a~~vl~h~~~ 158 (235)
..+||=.||| .|.++..+++.. ...+..++.+ +.+..+.+.|....+..-...+ ....+.+|+|+. ....
T Consensus 170 g~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~-----~~g~ 242 (337)
T cd05283 170 GKRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIID-----TVSA 242 (337)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEE-----CCCC
Confidence 4455556652 333444444432 1246666665 6666665555322111000011 112356888863 1111
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEE
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
...+.++.+.|+++|.++..
T Consensus 243 ----~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 243 ----SHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ----cchHHHHHHHhcCCCEEEEE
Confidence 13578889999999999865
No 400
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=29.11 E-value=44 Score=30.05 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.6
Q ss_pred CceEeeeccccchHHHHHhc
Q 026623 82 YRNVMDMNAGLGGFAAALES 101 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~ 101 (235)
...++++|||-|.++.++..
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~ 38 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQ 38 (259)
T ss_pred CCEEEEECCCchHHHHHHHH
Confidence 45899999999999988876
No 401
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=28.79 E-value=1.6e+02 Score=27.21 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=51.7
Q ss_pred ceEeeecccc-ch-HHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCC-CccceeeehhhhccCC
Q 026623 83 RNVMDMNAGL-GG-FAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYP-RTYDLIHANGVFSLYE 157 (235)
Q Consensus 83 r~VLD~GCG~-G~-faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p-~sFDlV~a~~vl~h~~ 157 (235)
.+|-=+|||. |. +...+... .+-..-++..|.. ..+..+.+.|....+.++-+-+.-.+ ..+|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~-------- 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFD-------- 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEE--------
Confidence 3667789887 44 34455543 2222334455554 45566666675433322212222111 45888875
Q ss_pred CCCChHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 158 NTCKPEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 158 ~~~~~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
+.....-.|..+.+.+-|..+|..+.
T Consensus 77 --AT~a~~H~e~a~~a~eaGk~VID~sP 102 (302)
T PRK08300 77 --ATSAGAHVRHAAKLREAGIRAIDLTP 102 (302)
T ss_pred --CCCHHHHHHHHHHHHHcCCeEEECCc
Confidence 22345667788888888888888654
No 402
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=28.79 E-value=1.9e+02 Score=25.55 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=48.2
Q ss_pred CCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--cc--cccCC-CCC-CCccceeeehh
Q 026623 81 RYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--HD--WCEGF-STY-PRTYDLIHANG 151 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~~--~~e~l-~~~-p~sFDlV~a~~ 151 (235)
...+||=.|+| .|.++..+++. +.. .+..++.+ +....+.+-|....+ ++ +.+.+ ... .+.+|+|+-.
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~--~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~- 241 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGAR--KVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVA- 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEEC-
Confidence 34566666765 45555555553 322 15455444 555555444531111 10 00111 011 2458888631
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
. .-...+.++.+.|+++|.++...
T Consensus 242 ----~----~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 242 ----T----GSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred ----C----CChHHHHHHHHHhhcCCEEEEEe
Confidence 0 11357888899999999998753
No 403
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.67 E-value=70 Score=23.82 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=49.4
Q ss_pred cccchHHHHHhcC---CCceeEEeecCcc-ccHHHHHHcCccccccccccCCCC---CC-CccceeeehhhhccCCCCCC
Q 026623 90 AGLGGFAAALESP---KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFST---YP-RTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 90 CG~G~faa~L~~~---~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~---~p-~sFDlV~a~~vl~h~~~~~~ 161 (235)
||+|.++..+.+. .. .+|+.+|.. +....+.++|....+ ..+....+ .. +..|.|++. ..+ ..
T Consensus 4 ~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~-----~~~-d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDATDPEVLERAGIEKADAVVIL-----TDD-DE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEE-----SSS-HH
T ss_pred EcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccchhhhHHhhcCccccCEEEEc-----cCC-HH
Confidence 6777776666542 21 368888887 777777888854333 22221111 12 567766651 111 12
Q ss_pred hHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 162 PEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
....+...-|-+-|...++.+-..
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHCCCCeEEEEECC
Confidence 335566777888888888887543
No 404
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=28.45 E-value=80 Score=29.46 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred ChHHHHHHHhhhhcCCcEEEEEeChHH
Q 026623 161 KPEDILLEMDRILRPEGAVIFRDEVDA 187 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~lii~d~~~~ 187 (235)
.++.+|.-.-++|+|||.+++-.-+..
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFHSL 248 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFHSL 248 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEecch
Confidence 467999999999999999998875543
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.17 E-value=2.6e+02 Score=26.53 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=55.8
Q ss_pred ceEeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccc----------cccCCCC-CC-Ccccee
Q 026623 83 RNVMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----------WCEGFST-YP-RTYDLI 147 (235)
Q Consensus 83 r~VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----------~~e~l~~-~p-~sFDlV 147 (235)
.+|-=+|.|+-| +|+.|++.+ .+|+++|.+ +.++. ..+|.+...-. -...+.. .+ ..-|+|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvv 79 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAF 79 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEE
Confidence 356667888765 567777765 368899987 55554 34443221100 0000110 11 345665
Q ss_pred eehhhhccCCCC---------CChHHHHHHHhhhhcCCcEEEEEeCh--HHHHHHHH
Q 026623 148 HANGVFSLYENT---------CKPEDILLEMDRILRPEGAVIFRDEV--DALNKVRK 193 (235)
Q Consensus 148 ~a~~vl~h~~~~---------~~~~~~L~Em~RVLRPGG~lii~d~~--~~~~~i~~ 193 (235)
+. -++.. ..+..++.++.+.||||-.+|+.-+. ...+++..
T Consensus 80 ii-----~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 80 LI-----AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EE-----EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 53 22211 23457788899999998888777543 23444444
No 406
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=27.80 E-value=1.3e+02 Score=23.44 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=56.4
Q ss_pred ecccc-ch-HHHHHhcCCCceeEEeecCccccHHHHHHcCccccccc------cccCCCCC---CCccceeeehhhhccC
Q 026623 88 MNAGL-GG-FAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHD------WCEGFSTY---PRTYDLIHANGVFSLY 156 (235)
Q Consensus 88 ~GCG~-G~-faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~------~~e~l~~~---p~sFDlV~a~~vl~h~ 156 (235)
+|+|. |. ||..|.+.+ .+|+-++-+..++...+.|+.-...+ --...+.. ...||+|+...
T Consensus 4 ~G~GaiG~~~a~~L~~~g---~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v----- 75 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQAG---HDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV----- 75 (151)
T ss_dssp ESTSHHHHHHHHHHHHTT---CEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-----
T ss_pred ECcCHHHHHHHHHHHHCC---CceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-----
Confidence 55553 33 566665544 35666666565566677776322111 00112222 28899998631
Q ss_pred CCCCChHHHHHHHhhhhcCCcEEEEEeC-hHHHHHHHHHH
Q 026623 157 ENTCKPEDILLEMDRILRPEGAVIFRDE-VDALNKVRKFA 195 (235)
Q Consensus 157 ~~~~~~~~~L~Em~RVLRPGG~lii~d~-~~~~~~i~~~~ 195 (235)
.--+.+.++..+.+.+.|...+++.-+ ....+.+.+..
T Consensus 76 -Ka~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 76 -KAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp -SGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred -cccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 112567999999999999987777643 44444444443
No 407
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.20 E-value=2.3e+02 Score=26.14 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=50.2
Q ss_pred CceEeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHH-----------cCccccccccccCCCCCCCcc-ce
Q 026623 82 YRNVMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYE-----------RGLIGIYHDWCEGFSTYPRTY-DL 146 (235)
Q Consensus 82 ~r~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~-----------Rgl~~~~~~~~e~l~~~p~sF-Dl 146 (235)
+++|-=+|+|+ .++++.++..| .+|+..|.+ +.++.+.+ .|+... ..-+.+.+. .++ |.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~-~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPG--ASPARLRFV-ATIEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChh--hHHhhceec-CCHHHH
Confidence 56788889984 35666677665 467778776 54443221 222110 000111111 122 22
Q ss_pred e-eehhhhccCCCCCCh-HHHHHHHhhhhcCCcEEEEEeCh
Q 026623 147 I-HANGVFSLYENTCKP-EDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 147 V-~a~~vl~h~~~~~~~-~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
+ -|..|++.++..-++ ..++.|++++++|+- ++.+.+.
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS 120 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTS 120 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC
Confidence 1 234445555543333 278899999999987 4444433
No 408
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=26.73 E-value=3.6e+02 Score=23.01 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred CceEeeecc--ccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCC----C--CCCCccceeeehhh
Q 026623 82 YRNVMDMNA--GLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF----S--TYPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l----~--~~p~sFDlV~a~~v 152 (235)
..+||=.|+ +.|.++..++... ..+++.++.+ ..++.+.+.|....+......+ . .....+|+++..
T Consensus 145 ~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~-- 220 (328)
T cd08268 145 GDSVLITAASSSVGLAAIQIANAA--GATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDP-- 220 (328)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEEC--
Confidence 457887776 3444444444432 1245555555 5555555555311111000001 0 012468888741
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. -...+.+..+.|+++|.++..
T Consensus 221 ---~-----~~~~~~~~~~~l~~~g~~v~~ 242 (328)
T cd08268 221 ---V-----GGPQFAKLADALAPGGTLVVY 242 (328)
T ss_pred ---C-----chHhHHHHHHhhccCCEEEEE
Confidence 1 124567778899999999854
No 409
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=26.65 E-value=1.9e+02 Score=25.79 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=50.2
Q ss_pred CCceEeeeccc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCC-CCCCccceeeehhh
Q 026623 81 RYRNVMDMNAG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFS-TYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~-~~p~sFDlV~a~~v 152 (235)
...+||-.|+| .|.++..+++. +. .+|+.++.+ +.+..+.+-|....+.. +.+.+. ..++.+|+++.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid--- 249 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGP--ANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVID--- 249 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEE---
Confidence 35688888764 23344444443 32 246666655 66666666564222211 001111 11235788864
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. .-...+.++.|.|+++|.++..
T Consensus 250 --~~----g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 250 --FV----NNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred --CC----CCHHHHHHHHHHhhcCCeEEEE
Confidence 11 1146799999999999999975
No 410
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.33 E-value=98 Score=30.44 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=47.3
Q ss_pred cccchHHHHHh----cCCCceeEEeecCcc-ccHHHHHHcCccccccccccC--CCCCC-CccceeeehhhhccCCCCCC
Q 026623 90 AGLGGFAAALE----SPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEG--FSTYP-RTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 90 CG~G~faa~L~----~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~--l~~~p-~sFDlV~a~~vl~h~~~~~~ 161 (235)
||+|.++..+. +.+ .+++-+|.. +..+.+.+.|....+-|-++. +---. +..|.+++. .++ .+
T Consensus 423 ~G~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~-----~~~-~~ 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT-----IPN-GY 493 (558)
T ss_pred ECCChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEE-----cCC-hH
Confidence 55665554444 444 368888887 777777777754433222221 11112 677865541 111 11
Q ss_pred hHHHHHHHhhhhcCCcEEEEEeC
Q 026623 162 PEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
-...+...-|-+.|.-.++.+-+
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC
Confidence 12335556677889888888854
No 411
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=26.30 E-value=1.9e+02 Score=27.07 Aligned_cols=99 Identities=18% Similarity=0.022 Sum_probs=51.4
Q ss_pred CceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceeeehhh
Q 026623 82 YRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~a~~v 152 (235)
..+||=.|||. |.++..+++ .+.. .++..|.+ +.++.+.+.|...... +..+.+. +..+.+|+|+-...
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~--~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAA--VVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 45666677753 334444444 3432 24445665 6788888877521110 0001111 12256888874221
Q ss_pred hc-----cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FS-----LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~-----h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
-. |-....+...++.+.-+.|||||.+++-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 10 0000012235899999999999999984
No 412
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=26.20 E-value=2.3e+02 Score=29.30 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=57.0
Q ss_pred CCceEeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHH-----------cCcccc--ccccccCCCCCCCcc
Q 026623 81 RYRNVMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYE-----------RGLIGI--YHDWCEGFSTYPRTY 144 (235)
Q Consensus 81 ~~r~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~-----------Rgl~~~--~~~~~e~l~~~p~sF 144 (235)
.+++|-=+|+|+ ++++..++..+ ..|+-.|.+ +.++.+.+ +|.+.. .......+.+- .++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 409 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY 409 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 567788899986 34565666555 468888887 66654322 232210 00000112110 111
Q ss_pred -ceeeehhhhccCCCCCCh---HHHHHHHhhhhcCCcEEEEEeChHHHHHHHHH
Q 026623 145 -DLIHANGVFSLYENTCKP---EDILLEMDRILRPEGAVIFRDEVDALNKVRKF 194 (235)
Q Consensus 145 -DlV~a~~vl~h~~~~~~~---~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~~ 194 (235)
++--|..|++-++ +++ .+++.|++++++|+..|.-+.+.=.+..|...
T Consensus 410 ~~~~~aDlViEAv~--E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~ 461 (737)
T TIGR02441 410 SGFKNADMVIEAVF--EDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAV 461 (737)
T ss_pred HHhccCCeehhhcc--ccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence 1222333344433 233 39999999999999777766544334444443
No 413
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=25.98 E-value=1.2e+02 Score=27.20 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred Eeeeccccc--hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCC
Q 026623 85 VMDMNAGLG--GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCK 161 (235)
Q Consensus 85 VLD~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~ 161 (235)
|-=+|+|.= .++..|.+.+ .+|+..|.+ +.++.+.+.|..... +. +.+......-|+|+. -+++. .
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~g~~~~~-s~-~~~~~~~~~~dvIi~-----~vp~~-~ 71 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKEDRTTGVA-NL-RELSQRLSAPRVVWV-----MVPHG-I 71 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCcccC-CH-HHHHhhcCCCCEEEE-----EcCch-H
Confidence 334677653 3666776665 246667776 656655565533211 00 111101123577765 23443 5
Q ss_pred hHHHHHHHhhhhcCCcEEEE
Q 026623 162 PEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 162 ~~~~L~Em~RVLRPGG~lii 181 (235)
...++.++...|+||-.+|-
T Consensus 72 ~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred HHHHHHHHHhhCCCCCEEEE
Confidence 67888899888988854443
No 414
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=25.61 E-value=69 Score=26.49 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=56.6
Q ss_pred CceEeeeccccchHHHHHhcCCCceeEEeecCccccHHHHHHcCccccccccccCCCCCC--CccceeeehhhhccCC-C
Q 026623 82 YRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAKNTLGVIYERGLIGIYHDWCEGFSTYP--RTYDLIHANGVFSLYE-N 158 (235)
Q Consensus 82 ~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s~~L~~~~~Rgl~~~~~~~~e~l~~~p--~sFDlV~a~~vl~h~~-~ 158 (235)
.++||=+|.=.-.|...|.... ..|.............+.+-....+ +. ...+ ..||.|+- ++| +
T Consensus 13 ~k~vL~~g~~~D~~~~~L~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~--f~--~~~~~~~~~D~vvl-----y~PKa 80 (155)
T PF08468_consen 13 GKSVLFAGDPQDDLPAQLPAIA---VSVHVFSYHHWYALQKQAQSNVQFH--FG--AELPADQDFDTVVL-----YWPKA 80 (155)
T ss_dssp T-EEEEEE---SSHHHHS--SE---EEEEESBHHHHHHHHHHHGGGEEE---SS----HHHHTT-SEEEE-----E--SS
T ss_pred CCeEEEEcCCchhhHHHhhhcC---CEEEEEEchHHHHHhHhcccCceEe--ee--ccCCcccCCCEEEE-----EccCc
Confidence 5789999988888988888542 2344333221111111211111111 01 1122 67999864 343 4
Q ss_pred CCChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHHHhccCceeEeecCC
Q 026623 159 TCKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKFAEGMRWDTKMMDHE 208 (235)
Q Consensus 159 ~~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~~~~~~W~~~~~~~~ 208 (235)
+......|.-+...|+|||-++|. |+..-++.+.++++.. -.+.+.|+-
T Consensus 81 K~e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~-~~~~KiDSA 130 (155)
T PF08468_consen 81 KAEAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPY-GKINKIDSA 130 (155)
T ss_dssp HHHHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTT-S--EEE---
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhh-CCcceeecc
Confidence 444567777888889999988776 7777677778888877 567776665
No 415
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=24.84 E-value=1.5e+02 Score=26.22 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=41.1
Q ss_pred cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceeeehhhhccCCCCCChH
Q 026623 92 LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIHANGVFSLYENTCKPE 163 (235)
Q Consensus 92 ~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~a~~vl~h~~~~~~~~ 163 (235)
.|.++..+++. + .+++.++.+ +.++.+.+-|....+. ++.+.+- +..+.+|+|+- ... .
T Consensus 156 vG~~a~q~a~~~G---~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid-----~~g-----~ 222 (324)
T cd08291 156 LGRMLVRLCKADG---IKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFD-----AVG-----G 222 (324)
T ss_pred HHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEE-----CCC-----c
Confidence 44455555543 4 246666665 6666666655322221 1111110 12246888874 111 1
Q ss_pred HHHHHHhhhhcCCcEEEEE
Q 026623 164 DILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 164 ~~L~Em~RVLRPGG~lii~ 182 (235)
..+.+..+.|++||.+++.
T Consensus 223 ~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 223 GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred HHHHHHHHhhCCCCEEEEE
Confidence 3345667889999998875
No 416
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=24.79 E-value=1.5e+02 Score=27.46 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=46.7
Q ss_pred CCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-cc-HHHHHHcCcccccccc-ccCCCCCCCccceeeehhhhcc
Q 026623 81 RYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NT-LGVIYERGLIGIYHDW-CEGFSTYPRTYDLIHANGVFSL 155 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~-L~~~~~Rgl~~~~~~~-~e~l~~~p~sFDlV~a~~vl~h 155 (235)
...+||=.|||. |.++..+++ .+. .|+.++.+ +. +.++.+-|....+... -+.+.-..+.+|+|+-.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga---~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~----- 249 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGL---RVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDT----- 249 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCC---eEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEEC-----
Confidence 356788788752 334445544 343 45565554 33 4555555642221100 00010001247777631
Q ss_pred CCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 156 YENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 156 ~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.+..+.|||||.++..
T Consensus 250 ~----G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 V----SAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred C----CcHHHHHHHHHhhcCCCEEEEE
Confidence 1 1134788889999999999865
No 417
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=24.67 E-value=3.9e+02 Score=24.01 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=57.1
Q ss_pred ceEeeecccc-ch-HHHHHhcCCCceeEEeecCcc-ccHHHHHHc-Ccccccccccc--CC----CCCCCccceeeehhh
Q 026623 83 RNVMDMNAGL-GG-FAAALESPKSWVMNVVPTTAK-NTLGVIYER-GLIGIYHDWCE--GF----STYPRTYDLIHANGV 152 (235)
Q Consensus 83 r~VLD~GCG~-G~-faa~L~~~~~~~~~V~~~D~s-~~L~~~~~R-gl~~~~~~~~e--~l----~~~p~sFDlV~a~~v 152 (235)
.+|+=+|||. |+ |+.+|.+.+ .+|+.++-+ +.++.+.++ |+.-.-++--. .. +-....||+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G---~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v- 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG---LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC- 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC---CCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-
Confidence 3677788885 54 677777655 357777666 567766654 65211000000 01 10125789886411
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE-eChHHHHHHHHH
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR-DEVDALNKVRKF 194 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~-d~~~~~~~i~~~ 194 (235)
.--+.+.++..+...+.|+..++.. ......+.+.+.
T Consensus 79 -----K~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~ 116 (305)
T PRK05708 79 -----KAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAAR 116 (305)
T ss_pred -----CHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHh
Confidence 1114578899999999998876555 333333334443
No 418
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=24.54 E-value=55 Score=26.55 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=51.6
Q ss_pred eccccc--hHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCChHH
Q 026623 88 MNAGLG--GFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPED 164 (235)
Q Consensus 88 ~GCG~G--~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~~ 164 (235)
+|+|.= .++..|.+.+ .+|...|.+ +..+...+.|... |+...-.-...|+|+. -+++....+.
T Consensus 7 IGlG~mG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~g~~~-----~~s~~e~~~~~dvvi~-----~v~~~~~v~~ 73 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAG---YEVTVYDRSPEKAEALAEAGAEV-----ADSPAEAAEQADVVIL-----CVPDDDAVEA 73 (163)
T ss_dssp E--SHHHHHHHHHHHHTT---TEEEEEESSHHHHHHHHHTTEEE-----ESSHHHHHHHBSEEEE------SSSHHHHHH
T ss_pred EchHHHHHHHHHHHHhcC---CeEEeeccchhhhhhhHHhhhhh-----hhhhhhHhhcccceEe-----ecccchhhhh
Confidence 455432 3566666665 357778877 6666666666211 1211101144488775 2333334668
Q ss_pred HHHH--HhhhhcCCcEEEEEeCh--HHHHHHHHHHh
Q 026623 165 ILLE--MDRILRPEGAVIFRDEV--DALNKVRKFAE 196 (235)
Q Consensus 165 ~L~E--m~RVLRPGG~lii~d~~--~~~~~i~~~~~ 196 (235)
++.+ +..-|++|..+|-..+. +...++.+.+.
T Consensus 74 v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~ 109 (163)
T PF03446_consen 74 VLFGENILAGLRPGKIIIDMSTISPETSRELAERLA 109 (163)
T ss_dssp HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH
T ss_pred hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh
Confidence 8888 88888888888877644 33455555543
No 419
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.51 E-value=1.2e+02 Score=24.58 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=32.8
Q ss_pred CCCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 140 YPRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 140 ~p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
|++..|.|+....= ..-++.+.|....+-|..+|.+++..
T Consensus 42 ~ddvvD~vllWwR~----~DgDL~D~LvDa~~~L~d~G~IWvlt 81 (127)
T PF11253_consen 42 YDDVVDVVLLWWRD----DDGDLVDALVDARTNLADDGVIWVLT 81 (127)
T ss_pred ccccccEEEEEEEC----CcchHHHHHHHHHhhhcCCCEEEEEc
Confidence 56888888764432 34589999999999999999999996
No 420
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=24.47 E-value=81 Score=30.80 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=56.2
Q ss_pred eEeeeccccchH--HHHHhcCCCceeEEeecCcc-ccHHHHH-------HcCcccccccccc-CCC--C-CC---Cccce
Q 026623 84 NVMDMNAGLGGF--AAALESPKSWVMNVVPTTAK-NTLGVIY-------ERGLIGIYHDWCE-GFS--T-YP---RTYDL 146 (235)
Q Consensus 84 ~VLD~GCG~G~f--aa~L~~~~~~~~~V~~~D~s-~~L~~~~-------~Rgl~~~~~~~~e-~l~--~-~p---~sFDl 146 (235)
+|-=+|+|+.|+ |+.|++.+. ..+|+++|.. +.++.+. +.|+...+..-.. .|. + +. ..-|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~-g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCP-DIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 466679999874 566776642 2468899987 5555432 2222111100000 011 1 01 23455
Q ss_pred eeeh-hhhc--------cCCCCCChHHHHHHHhhhhcCCcEEEEEeChH--HHHHHHHH
Q 026623 147 IHAN-GVFS--------LYENTCKPEDILLEMDRILRPEGAVIFRDEVD--ALNKVRKF 194 (235)
Q Consensus 147 V~a~-~vl~--------h~~~~~~~~~~L~Em~RVLRPGG~lii~d~~~--~~~~i~~~ 194 (235)
++.. ..-. +-++-..++.+..++.+.|++|-.+|+.-+.+ ..+++...
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~ 140 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKI 140 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHH
Confidence 5321 1110 11122235799999999999877777765432 34444444
No 421
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=24.14 E-value=2.8e+02 Score=20.05 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCh-HHHHHHHhhhhcCCcEE-EEEeChHHHHHHHHHHhccCceeEeecCCCCCCCCceEEEEEec
Q 026623 160 CKP-EDILLEMDRILRPEGAV-IFRDEVDALNKVRKFAEGMRWDTKMMDHEDGPLMPEKILIAVKQ 223 (235)
Q Consensus 160 ~~~-~~~L~Em~RVLRPGG~l-ii~d~~~~~~~i~~~~~~~~W~~~~~~~~~~~~~~e~~l~~~k~ 223 (235)
|.. .--+++.-+-|++|+.+ ++.|......-|..+++....++.....+ +.+-.++.+|.
T Consensus 19 CP~Pll~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~~~~----~g~~~~~I~k~ 80 (81)
T PRK00299 19 CPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQETE----QLPYRYLIRKG 80 (81)
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEEec----CCEEEEEEEEC
Confidence 553 23345555566889965 44566667888999999999998754433 23344555664
No 422
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=24.03 E-value=1.2e+02 Score=22.56 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=17.5
Q ss_pred CceEeeeccccc-hHHHHHhcCCCceeEEeecCc
Q 026623 82 YRNVMDMNAGLG-GFAAALESPKSWVMNVVPTTA 114 (235)
Q Consensus 82 ~r~VLD~GCG~G-~faa~L~~~~~~~~~V~~~D~ 114 (235)
..+||=+||-+| ++|..+.......++.+++.+
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 478999999999 466555432112345555543
No 423
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=23.59 E-value=78 Score=21.78 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.6
Q ss_pred ChHHHHHHHhhhhcCCcEEE
Q 026623 161 KPEDILLEMDRILRPEGAVI 180 (235)
Q Consensus 161 ~~~~~L~Em~RVLRPGG~li 180 (235)
..+..-.||.||.|-||.++
T Consensus 32 py~~ls~~~q~I~r~GGkIv 51 (56)
T PF01383_consen 32 PYSQLSQEMQRINRQGGKIV 51 (56)
T ss_dssp EHHHHHHHHHHHHHCT-EEE
T ss_pred cHHHhHHHHHHHHHCCCEEE
Confidence 35789999999999999986
No 424
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=23.57 E-value=1.1e+02 Score=27.63 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=33.6
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc--ccHHHHHH
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK--NTLGVIYE 123 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s--~~L~~~~~ 123 (235)
...-|..+|-|.||++.++.+.++--..|+..|.- ..|+...+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence 44569999999999999999877655678888875 66665544
No 425
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=23.50 E-value=2.2e+02 Score=29.22 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCceEeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHH-----------HcCcccc--ccccccCCCC---CC
Q 026623 81 RYRNVMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIY-----------ERGLIGI--YHDWCEGFST---YP 141 (235)
Q Consensus 81 ~~r~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~-----------~Rgl~~~--~~~~~e~l~~---~p 141 (235)
.+++|-=+|+|+ .+++..++..+ .+|+-.|.+ +.++.+. ++|.+.. .......+.+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 388 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA 388 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH
Confidence 457888999998 35666666655 468888887 6665432 2332211 0000011110 11
Q ss_pred --CccceeeehhhhccCCCCCCh---HHHHHHHhhhhcCCcEEEEEeChHHHHHHHH
Q 026623 142 --RTYDLIHANGVFSLYENTCKP---EDILLEMDRILRPEGAVIFRDEVDALNKVRK 193 (235)
Q Consensus 142 --~sFDlV~a~~vl~h~~~~~~~---~~~L~Em~RVLRPGG~lii~d~~~~~~~i~~ 193 (235)
..-|+| ++-++. ++ .+++.|++++++|+-.|.-+.+.=.+.+|.+
T Consensus 389 ~~~~aDlV-----iEav~E--~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 389 GFERVDVV-----VEAVVE--NPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred HhcCCCEE-----EecccC--cHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 344444 444432 33 3999999999999965554443322334333
No 426
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=23.45 E-value=1.3e+02 Score=26.93 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=44.2
Q ss_pred eecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCCChH
Q 026623 87 DMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTCKPE 163 (235)
Q Consensus 87 D~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~~~~ 163 (235)
=+|+|. ..++..|.+.+ .+|+..|.+ +..+.+.+.|... ..+ .+.+......-|+|+. .+++....+
T Consensus 5 ~IGlG~mG~~mA~~L~~~g---~~v~v~dr~~~~~~~~~~~g~~~-~~s-~~~~~~~~~~advVi~-----~vp~~~~~~ 74 (299)
T PRK12490 5 LIGLGKMGGNMAERLREDG---HEVVGYDVNQEAVDVAGKLGITA-RHS-LEELVSKLEAPRTIWV-----MVPAGEVTE 74 (299)
T ss_pred EEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHCCCee-cCC-HHHHHHhCCCCCEEEE-----EecCchHHH
Confidence 356664 34667777665 246666666 5555555555321 110 1111100012466654 344433556
Q ss_pred HHHHHHhhhhcCCcEEEEE
Q 026623 164 DILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 164 ~~L~Em~RVLRPGG~lii~ 182 (235)
.++.++.-.|+||-++|-.
T Consensus 75 ~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 75 SVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred HHHHHHhccCCCCCEEEEC
Confidence 7777777778887665554
No 427
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=23.39 E-value=1.7e+02 Score=26.57 Aligned_cols=91 Identities=8% Similarity=0.000 Sum_probs=50.5
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc--c----cccCCC-CCCCccceeeeh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH--D----WCEGFS-TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~--~----~~e~l~-~~p~sFDlV~a~ 150 (235)
...+||=.|||. |.++..+++. +. ..|+.++.+ +.++.+.+-|....+. + +.+.+. ..++.+|+|+-.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~--~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGA--SRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 356778778642 3344445443 32 257777777 7777776666422221 0 111110 012358887631
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPE-GAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~ 182 (235)
. .-...+.+..+.|||| |.+++.
T Consensus 264 -----~----g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 264 -----I----GNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred -----C----CChHHHHHHHHhhccCCCeEEEE
Confidence 1 1135788888999997 988865
No 428
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=23.18 E-value=4.5e+02 Score=26.77 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=69.4
Q ss_pred cccccccchHHHHHHHHH-HHHHhhhhC---CCCCceEeeeccccchHHHHH------hcCCCceeEEeecCcc-ccHHH
Q 026623 52 TGKSYQEDSKLWKKHVNA-YKKMNSLIG---TRRYRNVMDMNAGLGGFAAAL------ESPKSWVMNVVPTTAK-NTLGV 120 (235)
Q Consensus 52 ~~~~f~~d~~~W~~~v~~-y~~~l~~l~---~~~~r~VLD~GCG~G~faa~L------~~~~~~~~~V~~~D~s-~~L~~ 120 (235)
+.+.|+.|.=.-.+--.. ++.++.... ..+.-.||=+|+|-|-+..+- .++. ..+.++.-. +..-.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~Rk---VklyavEKNPNAivt 410 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRK---VKLYAVEKNPNAIVT 410 (649)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCc---eEEEEEecCcchhhh
Confidence 567788876532221111 222332221 122557999999999764433 2333 346666654 43332
Q ss_pred HHHcC------ccccccccccCCCCCC-CccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEEe
Q 026623 121 IYERG------LIGIYHDWCEGFSTYP-RTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFRD 183 (235)
Q Consensus 121 ~~~Rg------l~~~~~~~~e~l~~~p-~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d 183 (235)
...|. -+..+..+...++ .| ...|++++-. |--+-+.+--...|--+-+.|||.|..|=+.
T Consensus 411 L~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 411 LQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhhhchhhhcCeeEEEeccccccC-CchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 22222 1233333333344 44 8899988633 3322233333578999999999999988775
No 429
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=23.11 E-value=1.7e+02 Score=26.81 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=48.5
Q ss_pred CceEeeeccccch-HHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccc--c-----ccccCC-CCC-CCccceeee
Q 026623 82 YRNVMDMNAGLGG-FAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIY--H-----DWCEGF-STY-PRTYDLIHA 149 (235)
Q Consensus 82 ~r~VLD~GCG~G~-faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~-----~~~e~l-~~~-p~sFDlV~a 149 (235)
..+||=.|||.=+ .+..+++ .+. ..|+.++.+ +.+..+.+-|....+ + ++.+.+ ... .+.+|+|+.
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~~G~--~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld 281 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKAAGA--SKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVE 281 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEE
Confidence 4566666664222 2233333 342 246666666 556666666642221 1 111111 111 256898874
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. . .....++.++.|.|+++|.++..
T Consensus 282 ~--~------g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 282 A--A------GAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred C--C------CCcHHHHHHHHHHHHcCCEEEEE
Confidence 2 1 11246788999999999999965
No 430
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=22.91 E-value=3.4e+02 Score=23.41 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccCCC--CCCCccceeeeh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEGFS--TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~l~--~~p~sFDlV~a~ 150 (235)
...+||=.|+ +.|..+..+++. +. .++.+..+ +.++.+.+.|.-..+. +..+.+. +....+|+|+..
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~ 214 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGF---KTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDA 214 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC---eEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEEC
Confidence 3567777776 356666666553 43 34444444 5566665555311111 1111111 122568888741
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+- . ..+.++.+.|+++|.++..
T Consensus 215 -~g-------~--~~~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 215 -VG-------G--ESATRLARSLRPGGTLVNY 236 (323)
T ss_pred -CC-------C--HHHHHHHHhhCCCCEEEEE
Confidence 11 1 3356788999999999854
No 431
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=22.31 E-value=3.2e+02 Score=24.13 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCCceEeeeccc--cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccc--c--ccccCCCC--CCCccceeee
Q 026623 80 RRYRNVMDMNAG--LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIY--H--DWCEGFST--YPRTYDLIHA 149 (235)
Q Consensus 80 ~~~r~VLD~GCG--~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~--~--~~~e~l~~--~p~sFDlV~a 149 (235)
....+||=.|+| .|.+++.+++. +. +|+.+..+ +..+.+.+-|....+ + ++.+.+.- -.+.+|+|+-
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~ 240 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMGL---RVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVV 240 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEE
Confidence 345678877775 56666666653 43 45555554 555555444421111 1 11111110 1256888862
Q ss_pred hhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 150 NGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 150 ~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.. .-...+.++.|.|+++|.++..
T Consensus 241 ~~---------~~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 241 TA---------VSAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred cC---------CchHHHHHHHHHhhcCCEEEEe
Confidence 11 1146788899999999999975
No 432
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=22.27 E-value=1.2e+02 Score=27.77 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=54.7
Q ss_pred CceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccc--c--cccccCCC--CCCCccceeeehh
Q 026623 82 YRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGI--Y--HDWCEGFS--TYPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~--~--~~~~e~l~--~~p~sFDlV~a~~ 151 (235)
..+||=.|+ |.|.++..|++. +. .++.+..+ +..+.+.+-|-... + +++.+.+. +..+.+|+|+-
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~---~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D-- 217 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA---TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD-- 217 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC---cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE--
Confidence 567887774 556788888875 32 33333334 55556666664211 1 22333332 12257999874
Q ss_pred hhccCCCCCChHHHHHHHhhhhcCCcEEEEEeC
Q 026623 152 VFSLYENTCKPEDILLEMDRILRPEGAVIFRDE 184 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~d~ 184 (235)
+.=...+.+..+.|+|+|.++..-.
T Consensus 218 --------~vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 218 --------TVGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred --------CCCHHHHHHHHHHhccCCEEEEEec
Confidence 1124778889999999999998643
No 433
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=22.02 E-value=3.5e+02 Score=23.92 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=24.1
Q ss_pred CceEeeecccc-c-hHHHHHhcCCCceeEEeecCcc-ccHHH
Q 026623 82 YRNVMDMNAGL-G-GFAAALESPKSWVMNVVPTTAK-NTLGV 120 (235)
Q Consensus 82 ~r~VLD~GCG~-G-~faa~L~~~~~~~~~V~~~D~s-~~L~~ 120 (235)
+++|.=+|||+ | +++..|+..+ .+|+.+|.+ +.++.
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~ 41 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTG---YDVTIVDVSEEILKN 41 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcC---CeEEEEeCCHHHHHH
Confidence 45777789884 3 4666666665 368888887 66653
No 434
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=21.98 E-value=3.1e+02 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=37.3
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhhh---CCCCCceEeeeccccch----HHHHHhcCCCceeEEeecCcc-ccHH
Q 026623 48 VEGVTGKSYQEDSKLWKKHVNAYKKMNSLI---GTRRYRNVMDMNAGLGG----FAAALESPKSWVMNVVPTTAK-NTLG 119 (235)
Q Consensus 48 ~~g~~~~~f~~d~~~W~~~v~~y~~~l~~l---~~~~~r~VLD~GCG~G~----faa~L~~~~~~~~~V~~~D~s-~~L~ 119 (235)
++|+.+..|+... .|+. ||..--+.| ..+ .....=.|||||+ .+.+|.++..--..+.-.|-+ +-|.
T Consensus 181 i~g~fAdQFeN~A-N~~a---HyetTGPEIw~QtkG-niDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlY 255 (391)
T KOG1481|consen 181 IRGWFADQFENVA-NWLA---HYETTGPEIWHQTKG-NIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLY 255 (391)
T ss_pred cccchhhhhcCHH-HHHH---HhcCcCcHHHHhhcC-CcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchh
Confidence 4566666675443 3443 444333333 122 2345668999996 467777764332456677776 6554
No 435
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.91 E-value=1.4e+02 Score=25.15 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=46.3
Q ss_pred Eeeeccccch--HHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccc----------cccccCCCCC------CCccc
Q 026623 85 VMDMNAGLGG--FAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIY----------HDWCEGFSTY------PRTYD 145 (235)
Q Consensus 85 VLD~GCG~G~--faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~----------~~~~e~l~~~------p~sFD 145 (235)
|==+|.|+=| +|+.|++.| .+|+++|.. +.++. ..+|..... +--...|-+. ....|
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G---~~V~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKG---HQVIGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTT---SEEEEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred EEEECCCcchHHHHHHHHhCC---CEEEEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 3346777765 466677776 479999997 54443 344421111 0000111110 12345
Q ss_pred eeeeh-hhhccCCCCCC---hHHHHHHHhhhhcCCcEEEEEeCh
Q 026623 146 LIHAN-GVFSLYENTCK---PEDILLEMDRILRPEGAVIFRDEV 185 (235)
Q Consensus 146 lV~a~-~vl~h~~~~~~---~~~~L~Em~RVLRPGG~lii~d~~ 185 (235)
+++.. ..-..-...+| ++.++.++.+.||+|-.+++.-+.
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 44421 11111011122 579999999999998888887543
No 436
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=21.82 E-value=5.3e+02 Score=22.29 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=48.6
Q ss_pred CceEeeecc--ccchHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCcccccc----c-cccCCC--CCCCccceeeeh
Q 026623 82 YRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYH----D-WCEGFS--TYPRTYDLIHAN 150 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~-~~e~l~--~~p~sFDlV~a~ 150 (235)
..+||=.|+ +.|.++..++. .+.. ++.+..+ +..+.+.+-|....+. + ..+.+- +..+.+|+++..
T Consensus 141 ~~~vlI~ga~g~~g~~~~~~a~~~g~~---v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 217 (334)
T PTZ00354 141 GQSVLIHAGASGVGTAAAQLAEKYGAA---TIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDC 217 (334)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEEC
Confidence 457776764 45666666655 3433 3334444 6666665555411111 0 111111 113568888741
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. -...+.++.+.|+|+|.++..
T Consensus 218 ~----------~~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 218 V----------GGSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred C----------chHHHHHHHHHhccCCeEEEE
Confidence 1 136788899999999999874
No 437
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.76 E-value=77 Score=27.34 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=32.4
Q ss_pred CccceeeehhhhccCC--C-------CCChHHHHHHHhhhhcCCcEEEEEeChH
Q 026623 142 RTYDLIHANGVFSLYE--N-------TCKPEDILLEMDRILRPEGAVIFRDEVD 186 (235)
Q Consensus 142 ~sFDlV~a~~vl~h~~--~-------~~~~~~~L~Em~RVLRPGG~lii~d~~~ 186 (235)
+..|+||.|..|.-+. . ..+++.++.-|+-+|.|+-.+|...+.+
T Consensus 49 g~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 49 GRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred CceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 6679999998886331 1 1245677778888888998888886554
No 438
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=21.70 E-value=2.1e+02 Score=25.95 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCceEeeeccccchH--HHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCC
Q 026623 81 RYRNVMDMNAGLGGF--AAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYE 157 (235)
Q Consensus 81 ~~r~VLD~GCG~G~f--aa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~ 157 (235)
..++|+=+|+|.=+. +..|...+ .+|+.+|.+ +.+..+.+.|...... +.+...-..+|+|+.. .+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~~~G~~~~~~---~~l~~~l~~aDiVI~t-----~p 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG---ANVTVGARKSAHLARITEMGLSPFHL---SELAEEVGKIDIIFNT-----IP 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCeeecH---HHHHHHhCCCCEEEEC-----CC
Confidence 467999999886543 33344444 367777776 5555555555321100 1122122579999863 12
Q ss_pred CCCChHHHHHHHhhhhcCCcEEE
Q 026623 158 NTCKPEDILLEMDRILRPEGAVI 180 (235)
Q Consensus 158 ~~~~~~~~L~Em~RVLRPGG~li 180 (235)
. .-+-.|+-..++||+.+|
T Consensus 220 ~----~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 220 A----LVLTKEVLSKMPPEALII 238 (296)
T ss_pred h----hhhhHHHHHcCCCCcEEE
Confidence 1 223467778899988766
No 439
>PRK06545 prephenate dehydrogenase; Validated
Probab=21.69 E-value=3.5e+02 Score=24.98 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=47.2
Q ss_pred eEeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCCC
Q 026623 84 NVMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENTC 160 (235)
Q Consensus 84 ~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~~ 160 (235)
+|.=+|+|. |.++..|.+.+. ...+...|.+ ..+..+...|.+... +..+.-.-...|+|+.+--. .
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~aDlVilavP~------~ 71 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPSAAQLARALGFGVIDEL---AADLQRAAAEADLIVLAVPV------D 71 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCCHHHHHHHhcCCCCccc---ccCHHHHhcCCCEEEEeCCH------H
Confidence 344456553 456777776653 2345555544 222222222322211 01111012567888752222 1
Q ss_pred ChHHHHHHHhhh-hcCCcEEEEEe----ChHHHHHHHHH
Q 026623 161 KPEDILLEMDRI-LRPEGAVIFRD----EVDALNKVRKF 194 (235)
Q Consensus 161 ~~~~~L~Em~RV-LRPGG~lii~d----~~~~~~~i~~~ 194 (235)
.+..++.++... ++|| .+++| ....++.++++
T Consensus 72 ~~~~vl~~l~~~~l~~~--~ivtDv~SvK~~i~~~~~~~ 108 (359)
T PRK06545 72 ATAALLAELADLELKPG--VIVTDVGSVKGAILAEAEAL 108 (359)
T ss_pred HHHHHHHHHhhcCCCCC--cEEEeCccccHHHHHHHHHh
Confidence 356788888874 7887 34444 22345555554
No 440
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=21.57 E-value=4.2e+02 Score=24.60 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=50.7
Q ss_pred CCceEeeec-cc-cchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHc--------Ccc-ccc--c---ccccCCC--CC
Q 026623 81 RYRNVMDMN-AG-LGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYER--------GLI-GIY--H---DWCEGFS--TY 140 (235)
Q Consensus 81 ~~r~VLD~G-CG-~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~R--------gl~-~~~--~---~~~e~l~--~~ 140 (235)
...+||=+| || .|.++..+++. +.-...|+.+|.+ +.++.+.+. |.. ..+ + ++.+.+. +.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 356788887 34 55566666653 2112357888887 777777664 321 011 0 1111110 12
Q ss_pred CCccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEE
Q 026623 141 PRTYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIF 181 (235)
Q Consensus 141 p~sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii 181 (235)
.+.||+|+-.. .-...+.+..+.||++|.+++
T Consensus 255 g~g~D~vid~~---------g~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 255 GQGFDDVFVFV---------PVPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCCEEEEcC---------CCHHHHHHHHHHhccCCeEEE
Confidence 25688876411 114678888999998886553
No 441
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=21.47 E-value=4.4e+02 Score=24.06 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCcccccc----ccccC----------------
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYH----DWCEG---------------- 136 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~----~~~e~---------------- 136 (235)
...+||=.|+ +.|..+..+++. + .+++.++.+ +.++.+.+.|....+. +....
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAG---ANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEA 269 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhcc
Confidence 3568888887 344455555543 3 345555555 6677777666321111 00000
Q ss_pred --CC------CCCC-ccceeeehhhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 137 --FS------TYPR-TYDLIHANGVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 137 --l~------~~p~-sFDlV~a~~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
+. +... .+|+|+-. . . ...+.+..+.|+++|.++..
T Consensus 270 ~~~~~~v~~l~~~~~g~d~vid~-----~----g-~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 270 RRFGKAIWDILGGREDPDIVFEH-----P----G-RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred chHHHHHHHHhCCCCCCeEEEEC-----C----c-hHhHHHHHHHhccCCEEEEE
Confidence 00 0112 57877631 1 1 24578888999999999875
No 442
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=21.46 E-value=4.8e+02 Score=22.63 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHH-cCccccccc----cccCCC-CCCCccceeeeh
Q 026623 81 RYRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYE-RGLIGIYHD----WCEGFS-TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~-Rgl~~~~~~----~~e~l~-~~p~sFDlV~a~ 150 (235)
...+||=.|+ +.|.++..+++. +. .++.++.+ +....+.+ .|....+.. +.+.+. ..++.+|+++.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~---~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~- 220 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGA---RVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFD- 220 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEE-
Confidence 3467877774 355555556554 43 45555554 55555555 453221111 001111 11246888763
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
|.=...+.+..+.|+++|.++..
T Consensus 221 ---------~~g~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 221 ---------NVGGEILDAALTLLNKGGRIALC 243 (329)
T ss_pred ---------cchHHHHHHHHHhcCCCceEEEE
Confidence 11135788999999999998864
No 443
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.18 E-value=1.5e+02 Score=26.61 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=49.5
Q ss_pred CceEeeecccc--chHHHHHhcCCCceeEEeecCcc-ccHHH-----------HHHcCcccc--ccccccCCCC---CC-
Q 026623 82 YRNVMDMNAGL--GGFAAALESPKSWVMNVVPTTAK-NTLGV-----------IYERGLIGI--YHDWCEGFST---YP- 141 (235)
Q Consensus 82 ~r~VLD~GCG~--G~faa~L~~~~~~~~~V~~~D~s-~~L~~-----------~~~Rgl~~~--~~~~~e~l~~---~p- 141 (235)
.++|-=+|+|+ +++|..++..+ ..|+-.|.+ +.++. ..++|.... .....+.+.. +.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 34667788884 35666666665 358888887 66654 334443211 0000111111 11
Q ss_pred -CccceeeehhhhccCCCCCCh-HHHHHHHhhhh-cCCcEEEEEeC
Q 026623 142 -RTYDLIHANGVFSLYENTCKP-EDILLEMDRIL-RPEGAVIFRDE 184 (235)
Q Consensus 142 -~sFDlV~a~~vl~h~~~~~~~-~~~L~Em~RVL-RPGG~lii~d~ 184 (235)
..-|+|+ +-+++..++ ..++.++..++ +||-.++-+.+
T Consensus 82 ~~~~d~Vi-----Eav~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 FADRQLVI-----EAVVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred hCCCCEEE-----EecccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 3445554 333332222 27778999998 67755554443
No 444
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=21.06 E-value=3.1e+02 Score=24.01 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=50.2
Q ss_pred CceEeeecc--ccchHHHHHhcC--CCceeEEeecCcc-ccHHHHHHcCcccccc---ccccCCC-CCCCccceeeehhh
Q 026623 82 YRNVMDMNA--GLGGFAAALESP--KSWVMNVVPTTAK-NTLGVIYERGLIGIYH---DWCEGFS-TYPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~~--~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~---~~~e~l~-~~p~sFDlV~a~~v 152 (235)
..+||=.|+ +.|.++..+++. +. +|..+..+ +..+.+.+-|....+. ++.+.+. .-.+.+|+|+-. +
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~---~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~-~ 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGL---TVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSL-T 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCC---EEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEc-C
Confidence 457777775 566666666653 43 45555555 5666665555311111 0111111 112468888631 1
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
.-...+.+..+.|+++|.++..
T Consensus 225 --------~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 225 --------HTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred --------CcHHHHHHHHHHhccCCEEEEE
Confidence 1136788999999999999865
No 445
>PRK10083 putative oxidoreductase; Provisional
Probab=20.97 E-value=2.3e+02 Score=25.01 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=48.6
Q ss_pred CCceEeeecccc-chHHHHHhc--CCCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCCCCCCccceeeehhh
Q 026623 81 RYRNVMDMNAGL-GGFAAALES--PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~--~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~~~p~sFDlV~a~~v 152 (235)
...+||=.|||. |.++..+++ .+.. .++.++.+ +.+..+.+-|.-..+.. +.+.+.-....+|+|+-.
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~--~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~-- 235 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVK--AVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDA-- 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEEC--
Confidence 356777788642 223344444 2532 36666666 66777666665222211 111111111234566531
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.+..+.|+++|.++.-
T Consensus 236 ---~----g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 236 ---A----CHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred ---C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 1 1135789999999999999875
No 446
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=20.85 E-value=2.1e+02 Score=25.43 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCCceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccc----cccCCCCCCCccceeeehhh
Q 026623 80 RRYRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHD----WCEGFSTYPRTYDLIHANGV 152 (235)
Q Consensus 80 ~~~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~----~~e~l~~~p~sFDlV~a~~v 152 (235)
....+||=.|||. |.++..+++ .+. .++.++.+ +.+.++.+-|....+.. +.+.+... +.+|+++..
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~---~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-~~~d~vi~~-- 235 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGF---RTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQEL-GGAKLILAT-- 235 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhc-CCCCEEEEC--
Confidence 3456788888532 223333333 343 45666665 66777766664211110 00001101 347887641
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.++.|.|+++|.++..
T Consensus 236 ---~----g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 236 ---A----PNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred ---C----CchHHHHHHHHHcccCCEEEEE
Confidence 1 1136888899999999999865
No 447
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.84 E-value=5.6e+02 Score=22.21 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCceEeeecc--ccchHHHHHhc-CCCceeEEeecCccccHHHHHHcCcccc-c--cccccCCCCCCCccceeeehhhhc
Q 026623 81 RYRNVMDMNA--GLGGFAAALES-PKSWVMNVVPTTAKNTLGVIYERGLIGI-Y--HDWCEGFSTYPRTYDLIHANGVFS 154 (235)
Q Consensus 81 ~~r~VLD~GC--G~G~faa~L~~-~~~~~~~V~~~D~s~~L~~~~~Rgl~~~-~--~~~~e~l~~~p~sFDlV~a~~vl~ 154 (235)
...+||=.|+ +.|.++..++. .+.. |..++.......+.+.|.... . .+..+. ...++.+|+++.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~---v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~d~vl~----- 209 (331)
T cd08273 139 TGQRVLIHGASGGVGQALLELALLAGAE---VYGTASERNHAALRELGATPIDYRTKDWLPA-MLTPGGVDVVFD----- 209 (331)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCE---EEEEeCHHHHHHHHHcCCeEEcCCCcchhhh-hccCCCceEEEE-----
Confidence 3567887776 34445444544 3433 333332444445545452100 0 000011 111246787763
Q ss_pred cCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 155 LYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 155 h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .-...+.++.+.|+++|.++..
T Consensus 210 ~-----~~~~~~~~~~~~l~~~g~~v~~ 232 (331)
T cd08273 210 G-----VGGESYEESYAALAPGGTLVCY 232 (331)
T ss_pred C-----CchHHHHHHHHHhcCCCEEEEE
Confidence 1 1123478889999999999865
No 448
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=20.75 E-value=5.5e+02 Score=22.33 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=47.0
Q ss_pred CceEeeecc--ccchHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccccccCC-----CCCCCccceeeehhh
Q 026623 82 YRNVMDMNA--GLGGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGF-----STYPRTYDLIHANGV 152 (235)
Q Consensus 82 ~r~VLD~GC--G~G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l-----~~~p~sFDlV~a~~v 152 (235)
..+||=.|+ +.|..+..++.. +. .|+.++.+ +....+.+-|....+....+.+ ...++.+|+|+.
T Consensus 140 ~~~vlI~ga~g~ig~~~~~~a~~~g~---~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~--- 213 (329)
T cd08250 140 GETVLVTAAAGGTGQFAVQLAKLAGC---HVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYE--- 213 (329)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEE---
Confidence 456776664 455555556553 43 35554444 5555555545311111000110 011245788764
Q ss_pred hccCCCCCChHHHHHHHhhhhcCCcEEEEE
Q 026623 153 FSLYENTCKPEDILLEMDRILRPEGAVIFR 182 (235)
Q Consensus 153 l~h~~~~~~~~~~L~Em~RVLRPGG~lii~ 182 (235)
. .=...+.++.+.|+++|.++..
T Consensus 214 --~-----~g~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 214 --S-----VGGEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred --C-----CcHHHHHHHHHHhccCCeEEEE
Confidence 1 1136788999999999998854
No 449
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=20.56 E-value=3.4e+02 Score=26.08 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=48.0
Q ss_pred CCceEeeeccccchHHHHHhcCCCceeEEeecCcc-ccHHHHHHcCccccccccccCCCCCCCccceeeehhhhccCCCC
Q 026623 81 RYRNVMDMNAGLGGFAAALESPKSWVMNVVPTTAK-NTLGVIYERGLIGIYHDWCEGFSTYPRTYDLIHANGVFSLYENT 159 (235)
Q Consensus 81 ~~r~VLD~GCG~G~faa~L~~~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~~~e~l~~~p~sFDlV~a~~vl~h~~~~ 159 (235)
..++|+=+|||.=|.+.+..-+. ..++|+.+|.. .....+...|.... ..-+.+ ...|+|++..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~r~~~A~~~G~~v~--~leeal----~~aDVVItaT-------- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPIRALEAAMDGFRVM--TMEEAA----KIGDIFITAT-------- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChhhHHHHHhcCCEeC--CHHHHH----hcCCEEEECC--------
Confidence 46789999988755433332221 23567777655 33333444453111 000111 4568887621
Q ss_pred CChHHHHH-HHhhhhcCCcEEEEEe
Q 026623 160 CKPEDILL-EMDRILRPEGAVIFRD 183 (235)
Q Consensus 160 ~~~~~~L~-Em~RVLRPGG~lii~d 183 (235)
.-..++. |....+|||++++..-
T Consensus 259 -G~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 259 -GNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred -CCHHHHHHHHHhcCCCCcEEEEEC
Confidence 1235554 5889999999998764
No 450
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=20.36 E-value=2.4e+02 Score=25.66 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=48.2
Q ss_pred CceEeeecccc-chHHHHHhc-CCCceeEEeecCcc-ccHHHHHHcCccccccc------cccCCC-CCCCccceeeehh
Q 026623 82 YRNVMDMNAGL-GGFAAALES-PKSWVMNVVPTTAK-NTLGVIYERGLIGIYHD------WCEGFS-TYPRTYDLIHANG 151 (235)
Q Consensus 82 ~r~VLD~GCG~-G~faa~L~~-~~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~------~~e~l~-~~p~sFDlV~a~~ 151 (235)
..+||=.|||. |..+..+++ .+.. .++.++.+ +.+..+.+-|....+.. ..+.+. ..++.||+|+-.
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~~--~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~- 260 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGAS--RIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEV- 260 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEEC-
Confidence 45777677642 223333333 3422 35666655 66666666664222211 111110 113568888641
Q ss_pred hhccCCCCCChHHHHHHHhhhhc-CCcEEEEE
Q 026623 152 VFSLYENTCKPEDILLEMDRILR-PEGAVIFR 182 (235)
Q Consensus 152 vl~h~~~~~~~~~~L~Em~RVLR-PGG~lii~ 182 (235)
. .-...+.+..+.|+ ++|.++..
T Consensus 261 ----~----g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 261 ----I----GSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred ----C----CCHHHHHHHHHHhccCCCEEEEE
Confidence 1 01367889999999 99999975
No 451
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=20.35 E-value=2.1e+02 Score=26.15 Aligned_cols=91 Identities=10% Similarity=-0.016 Sum_probs=51.7
Q ss_pred CCceEeeecccc-chHHHHHhcC-CCceeEEeecCcc-ccHHHHHHcCccccccc------cccCCC-CCCCccceeeeh
Q 026623 81 RYRNVMDMNAGL-GGFAAALESP-KSWVMNVVPTTAK-NTLGVIYERGLIGIYHD------WCEGFS-TYPRTYDLIHAN 150 (235)
Q Consensus 81 ~~r~VLD~GCG~-G~faa~L~~~-~~~~~~V~~~D~s-~~L~~~~~Rgl~~~~~~------~~e~l~-~~p~sFDlV~a~ 150 (235)
...+||=.|||. |.++..+++. +. .+|+.+|.+ +.++.+.+.|....+.. +.+.+. ..++.+|+|+-
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid- 261 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKA--SRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFE- 261 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEE-
Confidence 356788888753 3455555543 32 257777777 77888877775322210 001010 01135787763
Q ss_pred hhhccCCCCCChHHHHHHHhhhhcCC-cEEEEE
Q 026623 151 GVFSLYENTCKPEDILLEMDRILRPE-GAVIFR 182 (235)
Q Consensus 151 ~vl~h~~~~~~~~~~L~Em~RVLRPG-G~lii~ 182 (235)
.. .-...+.+..+.||+| |.+++.
T Consensus 262 ----~~----G~~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 262 ----CI----GNVNVMRAALECCHKGWGESIII 286 (368)
T ss_pred ----CC----CCHHHHHHHHHHhhcCCCeEEEE
Confidence 11 1135788888999997 988765
Done!