BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026624
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 35/110 (31%)
Query: 67 VLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126
+LDVR+++++N H+ + HVP G +++ LPF K + +
Sbjct: 390 ILDVRNDNEWNNGHLSQAVHVP---------HGKLLETD-----------LPFNKNDVIY 429
Query: 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176
V CQ G+RS+ A LE G+ NI + G + ++
Sbjct: 430 VH---------------CQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQ 464
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 25/113 (22%)
Query: 59 LIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118
L+A RY LDVR ++++ H + +VP ++ SG+
Sbjct: 29 LLAGHRY--LDVRTPEEFSQGHACGAINVPY----------------MNRGASGM----- 65
Query: 119 FTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSG 171
+N +F++ V S F ++V CQ G RS A L AGF + I G
Sbjct: 66 --SKNTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 116
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 60 IAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119
+ +++ +DVR +Y HI ++ + PLF N+ N++GTI K + F
Sbjct: 13 LKLDKVIFVDVRTEGEYEEDHILNAINXPLFKNNEHNEVGTIYKXQGKHEAIQKGFDYVS 72
Query: 120 TKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176
K ++Q+ + + ++ ++ + G RS + N L G N+ + G + +
Sbjct: 73 YKLKDIYLQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGV-NVYQLEGGYKAYR 128
>pdb|1TWU|A Chain A, 2.0 A Crystal Structure Of A Yyce Protein Of Unknown
Function From Bacillus Subtilis, Putative
GlyoxalaseFOSFOMYCIN RESISTANCE PROTEIN
Length = 139
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 107 HNNFSGLFFGLPFTKQNPEFVQ----SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGF 162
HN + G+ FGLP + EF Q S P+S L+ + AA +KL+ G+
Sbjct: 44 HNGYDGVMFGLPHADYHLEFTQYEGGSTAPVPHPDSLLVFYVPNAVELAAITSKLKHMGY 103
Query: 163 QNI 165
Q +
Sbjct: 104 QEV 106
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173
KS PE ++V C+ R+A A L E GF+ I G+
Sbjct: 75 AKSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 34/112 (30%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124
+ +LDVRD S YN HI + +P+
Sbjct: 21 FTILDVRDRSTYNDGHIMGAMAMPI----------------------------------E 46
Query: 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176
+ V S + V +++ A N L AGF++++ + GL K
Sbjct: 47 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWK 98
>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|B Chain B, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
pdb|3HIX|C Chain C, Crystal Structure Of The Rhodanese_3 Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437i
Length = 106
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 34/112 (30%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124
+ +LDVRD S YN HI + P+
Sbjct: 14 FTILDVRDRSTYNDGHIXGAXAXPI----------------------------------E 39
Query: 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176
+ V S + V +++ A N L AGF++++ + GL K
Sbjct: 40 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWK 91
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPL 89
V+ +E + +A + +LDVR+ ++ H+ ++H+PL
Sbjct: 376 VSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL 414
>pdb|1WV9|A Chain A, Crystal Structure Of Rhodanese Homolog Tt1651 From An
Extremely Thermophilic Bacterium Thermus Thermophilus
Hb8
pdb|1WV9|B Chain B, Crystal Structure Of Rhodanese Homolog Tt1651 From An
Extremely Thermophilic Bacterium Thermus Thermophilus
Hb8
Length = 94
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG 178
P LL+VC++GL S AA LE G++ + + GLQ + G
Sbjct: 52 PRRPLLLVCEKGLLSQVAALYLEAEGYEAXS-LEGGLQALTQG 93
>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|B Chain B, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|C Chain C, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
pdb|3ILM|D Chain D, Crystal Structure Of The Alr3790 Protein From Anabaena Sp.
Northeast Structural Genomics Consortium Target Nsr437h
Length = 141
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 34/112 (30%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124
+ +LDVRD S YN HI + P+
Sbjct: 18 FTILDVRDRSTYNDGHIXGAXAXPI----------------------------------E 43
Query: 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176
+ V S + V +++ A N L AGF++++ + GL K
Sbjct: 44 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWK 95
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 34/112 (30%)
Query: 65 YAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124
+ +LDVRD S YN HI + P+
Sbjct: 23 FTILDVRDRSTYNDGHIXGAXAXPI----------------------------------E 48
Query: 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176
+ V S + V +++ A N L AGF++++ + GL K
Sbjct: 49 DLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWK 100
>pdb|2YGW|A Chain A, Crystal Structure Of Human Mcd
pdb|2YGW|B Chain B, Crystal Structure Of Human Mcd
Length = 460
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 152 AAANKLEEAGFQNIACITSGLQTVKPGTF 180
AAANK+ A F +I+ GLQ V+ GTF
Sbjct: 248 AAANKITAAIFYSISLTQQGLQGVELGTF 276
>pdb|2IFD|A Chain A, Crystal Structure Of A Remote Binding Site Mutant,
R492l, Of Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|1YMK|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain In The Apo Form
pdb|1YS0|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Disulfide
Form
Length = 175
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|2A2K|A Chain A, Crystal Structure Of An Active Site Mutant, C473s, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|1YM9|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfinic
Form
pdb|1YMD|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfonic
Form
pdb|1YML|A Chain A, Crystal Structure Of The Cdc25b Phosphatase Catalytic
Domain With The Active Site Cysteine In The Sulfenic
Form
Length = 175
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|2IFV|A Chain A, Crystal Structure Of An Active Site Mutant, C473d, Of
Cdc25b Phosphatase Catalytic Domain
Length = 175
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 70
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQT 174
+ K V+C G RSAAA L + G NI + G+Q+
Sbjct: 55 DKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQS 91
>pdb|2UZQ|A Chain A, Protein Phosphatase, New Crystal Form
pdb|2UZQ|B Chain B, Protein Phosphatase, New Crystal Form
pdb|2UZQ|C Chain C, Protein Phosphatase, New Crystal Form
pdb|2UZQ|D Chain D, Protein Phosphatase, New Crystal Form
pdb|2UZQ|E Chain E, Protein Phosphatase, New Crystal Form
pdb|2UZQ|F Chain F, Protein Phosphatase, New Crystal Form
Length = 203
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 34 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 82
>pdb|1CWT|A Chain A, Human Cdc25b Catalytic Domain With Methyl Mercury
Length = 178
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 24 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 72
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI-ACITSGLQTVKPG------ 178
F S+K++F E+ LV Q L A N + ++ + ++ T +P
Sbjct: 204 FAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSV 263
Query: 179 TFDSVGSTELQDAGKAGLVTVQGKI 203
+F+ G+ E + G TVQG+I
Sbjct: 264 SFEDEGTYECEAENSKGRDTVQGRI 288
>pdb|1QB0|A Chain A, Human Cdc25b Catalytic Domain
pdb|1CWS|A Chain A, Human Cdc25b Catalytic Domain With Tungstate
pdb|1CWR|A Chain A, Human Cdc25b Catalytic Domain Without Ion In Catalytic
Site
Length = 211
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSYHVPL 89
D+ Y++ E L+ V+++ ++D R +Y HIK++ ++PL
Sbjct: 42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,538,206
Number of Sequences: 62578
Number of extensions: 244963
Number of successful extensions: 672
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 32
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)