Query 026624
Match_columns 235
No_of_seqs 186 out of 1931
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01533 4RHOD_Repeat_2 Member 99.9 1.5E-22 3.3E-27 155.0 9.0 105 42-179 3-109 (109)
2 cd01518 RHOD_YceA Member of th 99.9 1E-22 2.2E-27 153.8 7.9 100 49-177 2-101 (101)
3 PLN02160 thiosulfate sulfurtra 99.9 1.3E-21 2.8E-26 156.5 12.1 117 47-187 13-131 (136)
4 cd01527 RHOD_YgaP Member of th 99.9 7.3E-22 1.6E-26 148.3 9.8 98 49-182 2-99 (99)
5 PRK00162 glpE thiosulfate sulf 99.9 5.5E-22 1.2E-26 151.6 9.0 104 47-185 3-106 (108)
6 cd01523 RHOD_Lact_B Member of 99.9 4.4E-21 9.6E-26 144.4 10.1 99 51-177 1-100 (100)
7 KOG1530 Rhodanese-related sulf 99.8 6.9E-21 1.5E-25 148.9 10.6 114 46-182 20-134 (136)
8 cd01520 RHOD_YbbB Member of th 99.8 1.4E-21 3.1E-26 154.2 6.6 123 51-177 1-126 (128)
9 cd01522 RHOD_1 Member of the R 99.8 1E-20 2.2E-25 147.1 10.1 104 51-179 1-106 (117)
10 cd01519 RHOD_HSP67B2 Member of 99.8 1.5E-20 3.2E-25 142.4 10.3 102 52-177 2-106 (106)
11 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.1E-20 2.4E-25 140.5 8.7 93 50-177 1-96 (96)
12 cd01528 RHOD_2 Member of the R 99.8 1.7E-20 3.6E-25 141.6 9.3 97 50-178 1-99 (101)
13 cd01534 4RHOD_Repeat_3 Member 99.8 2.4E-20 5.2E-25 139.3 9.9 93 51-177 1-95 (95)
14 cd01447 Polysulfide_ST Polysul 99.8 1.5E-20 3.2E-25 141.3 8.5 102 51-179 1-103 (103)
15 cd01526 RHOD_ThiF Member of th 99.8 1.3E-20 2.8E-25 147.3 8.5 111 46-181 5-117 (122)
16 cd01525 RHOD_Kc Member of the 99.8 1.9E-20 4.2E-25 141.6 9.0 102 51-177 1-105 (105)
17 PF00581 Rhodanese: Rhodanese- 99.8 6E-20 1.3E-24 139.1 11.5 107 52-177 1-112 (113)
18 cd01521 RHOD_PspE2 Member of t 99.8 4.7E-20 1E-24 141.5 10.5 99 49-182 8-110 (110)
19 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 6E-20 1.3E-24 151.0 11.2 113 46-182 33-162 (162)
20 cd01524 RHOD_Pyr_redox Member 99.8 3E-20 6.5E-25 137.5 8.4 89 51-176 1-89 (90)
21 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.1E-19 2.5E-24 141.3 11.6 111 51-179 2-122 (122)
22 cd01449 TST_Repeat_2 Thiosulfa 99.8 5.4E-20 1.2E-24 142.0 9.3 105 51-177 1-118 (118)
23 cd01529 4RHOD_Repeats Member o 99.8 1.1E-19 2.3E-24 136.0 9.4 87 62-177 10-96 (96)
24 cd01530 Cdc25 Cdc25 phosphatas 99.8 1.2E-19 2.7E-24 142.1 10.1 98 49-176 2-120 (121)
25 smart00450 RHOD Rhodanese Homo 99.8 2.9E-19 6.3E-24 131.5 8.1 98 62-181 2-100 (100)
26 cd01535 4RHOD_Repeat_4 Member 99.8 3.1E-19 6.6E-24 144.2 8.4 96 56-186 2-98 (145)
27 cd01532 4RHOD_Repeat_1 Member 99.8 7.8E-19 1.7E-23 130.7 8.9 85 59-177 5-92 (92)
28 cd01445 TST_Repeats Thiosulfat 99.8 1.6E-18 3.4E-23 139.0 11.0 108 51-176 1-137 (138)
29 cd01531 Acr2p Eukaryotic arsen 99.8 8.4E-19 1.8E-23 135.1 8.0 101 48-178 1-112 (113)
30 PRK01415 hypothetical protein; 99.8 1.3E-18 2.9E-23 151.7 10.0 104 47-179 110-213 (247)
31 cd00158 RHOD Rhodanese Homolog 99.8 1.1E-18 2.5E-23 126.6 7.8 88 56-176 2-89 (89)
32 PRK11493 sseA 3-mercaptopyruva 99.8 3.1E-18 6.7E-23 152.0 12.1 118 50-185 6-136 (281)
33 PLN02723 3-mercaptopyruvate su 99.8 5.4E-18 1.2E-22 153.3 12.0 119 49-185 22-152 (320)
34 PRK00142 putative rhodanese-re 99.8 4.8E-18 1E-22 153.3 11.0 105 46-179 109-213 (314)
35 PRK08762 molybdopterin biosynt 99.8 5E-18 1.1E-22 156.5 11.3 103 48-185 2-105 (376)
36 PRK05320 rhodanese superfamily 99.7 6E-18 1.3E-22 148.7 10.2 104 46-178 107-216 (257)
37 PRK09629 bifunctional thiosulf 99.7 9.3E-18 2E-22 163.1 12.5 119 49-185 9-130 (610)
38 COG0607 PspE Rhodanese-related 99.7 7.8E-18 1.7E-22 127.6 9.4 99 53-184 9-108 (110)
39 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1.7E-17 3.6E-22 127.9 8.7 98 49-176 2-112 (113)
40 PLN02723 3-mercaptopyruvate su 99.7 4.1E-17 8.9E-22 147.5 10.4 112 50-183 191-316 (320)
41 PRK11784 tRNA 2-selenouridine 99.7 1.8E-17 4E-22 151.1 7.8 129 52-184 4-135 (345)
42 TIGR03167 tRNA_sel_U_synt tRNA 99.7 1.4E-17 3.1E-22 149.9 6.7 118 64-184 2-121 (311)
43 PRK07878 molybdopterin biosynt 99.7 5.1E-17 1.1E-21 150.7 10.2 101 46-179 284-385 (392)
44 PRK11493 sseA 3-mercaptopyruva 99.7 4.5E-17 9.8E-22 144.5 9.3 111 51-184 155-279 (281)
45 COG2897 SseA Rhodanese-related 99.7 1.6E-16 3.4E-21 141.1 11.5 120 47-184 9-138 (285)
46 PRK10287 thiosulfate:cyanide s 99.7 5.3E-17 1.2E-21 124.2 7.3 82 63-178 19-100 (104)
47 TIGR02981 phageshock_pspE phag 99.7 1.3E-16 2.8E-21 121.5 9.1 81 63-177 17-97 (101)
48 PRK07411 hypothetical protein; 99.7 1.8E-16 4E-21 146.9 9.3 105 46-181 279-385 (390)
49 PRK09629 bifunctional thiosulf 99.7 4.5E-16 9.8E-21 151.4 11.2 113 50-184 148-271 (610)
50 PRK05597 molybdopterin biosynt 99.6 1.1E-15 2.5E-20 140.0 8.8 96 47-177 259-354 (355)
51 COG2897 SseA Rhodanese-related 99.6 1.9E-15 4.2E-20 134.2 9.9 112 50-183 157-281 (285)
52 cd01446 DSP_MapKP N-terminal r 99.6 3.1E-15 6.8E-20 118.2 10.0 113 51-178 2-127 (132)
53 PRK05600 thiamine biosynthesis 99.6 8.1E-15 1.8E-19 135.0 8.4 95 49-173 271-369 (370)
54 COG1054 Predicted sulfurtransf 99.4 6.2E-13 1.3E-17 117.4 5.1 103 47-178 111-213 (308)
55 KOG1529 Mercaptopyruvate sulfu 99.3 9.1E-12 2E-16 109.5 10.4 119 50-186 6-138 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.3 8.2E-12 1.8E-16 118.8 7.8 72 63-169 406-481 (482)
57 KOG3772 M-phase inducer phosph 99.2 4E-11 8.6E-16 107.4 5.8 108 44-180 151-278 (325)
58 KOG2017 Molybdopterin synthase 99.0 2.4E-10 5.2E-15 103.0 5.0 103 46-178 314-419 (427)
59 KOG1529 Mercaptopyruvate sulfu 98.6 9.2E-08 2E-12 84.4 6.6 94 63-178 171-276 (286)
60 COG5105 MIH1 Mitotic inducer, 98.3 1.5E-06 3.2E-11 77.9 7.1 107 46-185 239-365 (427)
61 COG2603 Predicted ATPase [Gene 97.6 1.3E-05 2.8E-10 71.2 -0.2 116 55-175 7-126 (334)
62 TIGR01244 conserved hypothetic 96.4 0.021 4.4E-07 45.4 7.9 104 49-183 13-129 (135)
63 PF04273 DUF442: Putative phos 96.1 0.031 6.7E-07 43.1 7.3 78 49-156 13-105 (110)
64 KOG1717 Dual specificity phosp 95.4 0.013 2.8E-07 51.9 3.0 110 50-178 5-124 (343)
65 PF13350 Y_phosphatase3: Tyros 95.3 0.076 1.7E-06 43.2 7.2 57 34-90 13-74 (164)
66 KOG1093 Predicted protein kina 94.1 0.016 3.5E-07 56.1 0.5 99 47-175 620-718 (725)
67 cd00127 DSPc Dual specificity 90.9 1.3 2.8E-05 34.1 7.4 28 135-162 79-109 (139)
68 smart00195 DSPc Dual specifici 88.5 2.8 6E-05 32.5 7.6 30 134-163 75-107 (138)
69 KOG3636 Uncharacterized conser 83.9 1.5 3.2E-05 41.8 4.3 110 51-176 309-427 (669)
70 PRK00142 putative rhodanese-re 83.3 0.24 5.2E-06 45.0 -1.1 40 51-91 16-55 (314)
71 COG3453 Uncharacterized protei 82.7 5.1 0.00011 31.5 6.2 28 48-75 13-40 (130)
72 TIGR03167 tRNA_sel_U_synt tRNA 81.1 3.8 8.3E-05 37.2 5.8 36 47-82 134-172 (311)
73 PLN02727 NAD kinase 79.8 5.3 0.00011 41.4 6.8 28 48-75 266-293 (986)
74 PF00782 DSPc: Dual specificit 76.8 7.6 0.00017 29.7 5.6 30 134-163 70-102 (133)
75 PF01451 LMWPc: Low molecular 71.0 2.4 5.3E-05 33.0 1.5 91 140-233 1-96 (138)
76 COG2453 CDC14 Predicted protei 67.0 9.6 0.00021 31.5 4.4 37 126-162 94-133 (180)
77 PF09992 DUF2233: Predicted pe 66.2 7.5 0.00016 31.4 3.5 40 135-174 98-142 (170)
78 PF05706 CDKN3: Cyclin-depende 63.7 16 0.00034 30.4 4.9 36 126-161 122-159 (168)
79 smart00226 LMWPc Low molecular 55.8 18 0.00039 28.1 3.9 36 140-175 1-37 (140)
80 PF03853 YjeF_N: YjeF-related 54.1 22 0.00048 29.0 4.3 32 135-167 23-57 (169)
81 COG0062 Uncharacterized conser 53.0 40 0.00086 28.8 5.7 39 128-167 38-81 (203)
82 PTZ00242 protein tyrosine phos 51.0 69 0.0015 26.1 6.8 26 135-160 96-123 (166)
83 TIGR00853 pts-lac PTS system, 50.2 24 0.00051 26.2 3.5 38 137-175 3-44 (95)
84 TIGR02689 ars_reduc_gluta arse 50.2 29 0.00063 26.7 4.2 36 138-173 1-37 (126)
85 COG4033 Uncharacterized protei 48.3 24 0.00052 26.6 3.2 63 156-228 23-85 (102)
86 TIGR00201 comF comF family pro 47.0 32 0.00069 28.5 4.2 33 136-168 151-186 (190)
87 PRK12361 hypothetical protein; 45.8 33 0.00071 33.3 4.7 24 135-158 173-198 (547)
88 cd05565 PTS_IIB_lactose PTS_II 44.6 24 0.00052 26.5 2.8 36 139-175 2-41 (99)
89 PF00156 Pribosyltran: Phospho 44.2 39 0.00085 25.2 4.0 33 135-167 86-121 (125)
90 PRK07688 thiamine/molybdopteri 43.7 18 0.00039 33.1 2.4 39 46-85 274-318 (339)
91 TIGR00197 yjeF_nterm yjeF N-te 43.1 65 0.0014 27.2 5.6 37 131-168 39-78 (205)
92 PRK09590 celB cellobiose phosp 42.8 33 0.0007 26.0 3.3 36 138-174 2-41 (104)
93 PF00218 IGPS: Indole-3-glycer 42.8 28 0.00061 30.7 3.4 92 50-166 141-236 (254)
94 PRK11391 etp phosphotyrosine-p 42.6 48 0.001 26.3 4.5 37 138-175 3-40 (144)
95 cd00115 LMWPc Substituted upda 42.4 30 0.00065 27.0 3.2 37 139-175 2-40 (141)
96 PRK10565 putative carbohydrate 42.1 55 0.0012 31.7 5.6 36 132-168 55-93 (508)
97 PLN03050 pyridoxine (pyridoxam 40.9 44 0.00096 29.2 4.3 30 138-168 61-93 (246)
98 PF02302 PTS_IIB: PTS system, 40.8 35 0.00076 24.2 3.1 25 139-163 1-30 (90)
99 cd05564 PTS_IIB_chitobiose_lic 39.8 32 0.00068 25.4 2.8 36 139-175 1-40 (96)
100 KOG1720 Protein tyrosine phosp 39.6 90 0.002 27.0 5.8 117 18-163 52-176 (225)
101 PRK13802 bifunctional indole-3 39.5 1.4E+02 0.003 30.3 8.0 90 51-165 144-237 (695)
102 PRK13530 arsenate reductase; P 39.2 53 0.0011 25.7 4.2 36 138-173 4-40 (133)
103 PLN03049 pyridoxine (pyridoxam 37.9 69 0.0015 30.7 5.4 31 137-168 59-92 (462)
104 PRK10126 tyrosine phosphatase; 37.3 60 0.0013 25.7 4.3 37 138-175 3-40 (147)
105 cd00079 HELICc Helicase superf 36.4 1E+02 0.0022 22.5 5.2 36 136-172 27-62 (131)
106 PF02590 SPOUT_MTase: Predicte 36.1 70 0.0015 26.0 4.5 47 129-175 59-110 (155)
107 PRK10310 PTS system galactitol 35.1 59 0.0013 23.9 3.6 36 139-175 4-44 (94)
108 PRK07199 phosphoribosylpyropho 34.9 58 0.0013 29.3 4.2 33 136-168 210-245 (301)
109 PRK10499 PTS system N,N'-diace 34.7 53 0.0011 24.8 3.4 22 138-159 4-25 (106)
110 PLN02918 pyridoxine (pyridoxam 33.8 86 0.0019 30.9 5.4 30 138-168 136-168 (544)
111 cd05567 PTS_IIB_mannitol PTS_I 33.6 50 0.0011 23.6 3.0 38 138-176 1-43 (87)
112 PF13344 Hydrolase_6: Haloacid 33.6 75 0.0016 23.5 4.0 37 124-163 20-57 (101)
113 COG2518 Pcm Protein-L-isoaspar 33.5 72 0.0016 27.4 4.3 28 151-178 108-136 (209)
114 PRK13809 orotate phosphoribosy 33.3 96 0.0021 26.3 5.1 30 134-163 115-147 (206)
115 COG0394 Wzb Protein-tyrosine-p 33.2 65 0.0014 25.6 3.8 37 138-174 3-40 (139)
116 PRK09162 hypoxanthine-guanine 33.0 64 0.0014 26.6 3.9 34 136-169 96-132 (181)
117 PRK11595 DNA utilization prote 32.9 71 0.0015 27.3 4.3 33 136-168 186-221 (227)
118 PLN02460 indole-3-glycerol-pho 31.7 3.1E+02 0.0067 25.4 8.4 89 51-165 214-314 (338)
119 PRK00103 rRNA large subunit me 31.2 1.3E+02 0.0027 24.5 5.3 49 129-177 59-112 (157)
120 PF01488 Shikimate_DH: Shikima 30.8 99 0.0021 24.0 4.5 37 136-173 11-47 (135)
121 PRK13957 indole-3-glycerol-pho 30.7 2.8E+02 0.006 24.4 7.7 89 51-165 135-227 (247)
122 cd00133 PTS_IIB PTS_IIB: subun 30.5 58 0.0013 21.9 2.8 21 139-159 1-22 (84)
123 COG0034 PurF Glutamine phospho 30.1 71 0.0015 30.7 4.1 36 136-171 347-385 (470)
124 TIGR00824 EIIA-man PTS system, 29.8 1.5E+02 0.0033 22.5 5.3 39 130-170 51-91 (116)
125 PRK03092 ribose-phosphate pyro 29.6 94 0.002 28.0 4.7 34 136-169 200-236 (304)
126 TIGR02691 arsC_pI258_fam arsen 29.1 72 0.0016 24.8 3.4 34 140-173 1-35 (129)
127 PRK06781 amidophosphoribosyltr 28.9 82 0.0018 30.3 4.4 36 136-171 347-385 (471)
128 PRK09246 amidophosphoribosyltr 28.4 85 0.0018 30.4 4.4 35 136-170 357-394 (501)
129 COG2185 Sbm Methylmalonyl-CoA 28.2 63 0.0014 26.1 2.9 39 134-172 60-102 (143)
130 PRK04923 ribose-phosphate pyro 28.2 95 0.0021 28.3 4.5 32 136-167 216-250 (319)
131 TIGR01587 cas3_core CRISPR-ass 28.1 1.3E+02 0.0027 27.0 5.3 46 127-172 212-258 (358)
132 COG1440 CelA Phosphotransferas 27.8 70 0.0015 24.4 2.9 23 138-160 2-24 (102)
133 COG0134 TrpC Indole-3-glycerol 27.7 3.4E+02 0.0074 24.0 7.7 89 51-164 140-232 (254)
134 PF03610 EIIA-man: PTS system 27.7 2.3E+02 0.0051 21.1 6.0 39 130-170 50-90 (116)
135 PF07755 DUF1611: Protein of u 27.3 96 0.0021 28.1 4.3 44 138-182 113-163 (301)
136 TIGR01744 XPRTase xanthine pho 27.1 1.8E+02 0.0039 24.3 5.7 50 134-183 114-173 (191)
137 cd05566 PTS_IIB_galactitol PTS 26.5 78 0.0017 22.4 3.0 21 139-159 2-23 (89)
138 COG4822 CbiK Cobalamin biosynt 26.3 1.6E+02 0.0035 25.7 5.2 45 124-168 121-173 (265)
139 PRK13812 orotate phosphoribosy 25.7 1.6E+02 0.0035 24.2 5.1 30 134-163 104-136 (176)
140 PF14572 Pribosyl_synth: Phosp 25.7 1E+02 0.0022 26.0 3.8 33 136-168 82-117 (184)
141 PRK02269 ribose-phosphate pyro 25.7 1E+02 0.0022 28.0 4.2 32 136-167 216-250 (320)
142 TIGR01090 apt adenine phosphor 25.4 1.2E+02 0.0025 24.6 4.1 30 135-164 107-139 (169)
143 PRK11784 tRNA 2-selenouridine 25.3 1.8E+02 0.0039 26.8 5.8 31 48-78 149-179 (345)
144 TIGR00640 acid_CoA_mut_C methy 25.3 1.8E+02 0.0038 22.8 5.0 45 124-171 43-91 (132)
145 PF04722 Ssu72: Ssu72-like pro 25.1 1.2E+02 0.0025 25.8 4.1 30 139-169 3-33 (195)
146 COG1040 ComFC Predicted amidop 24.7 1.1E+02 0.0023 26.4 3.9 31 138-168 185-218 (225)
147 PRK02304 adenine phosphoribosy 24.5 1.3E+02 0.0029 24.3 4.4 31 135-165 112-145 (175)
148 PRK07631 amidophosphoribosyltr 24.2 99 0.0021 29.8 4.0 35 136-170 347-384 (475)
149 smart00404 PTPc_motif Protein 24.1 1.5E+02 0.0032 20.8 4.2 17 137-153 39-56 (105)
150 smart00012 PTPc_DSPc Protein t 24.1 1.5E+02 0.0032 20.8 4.2 17 137-153 39-56 (105)
151 COG1576 Uncharacterized conser 24.0 2.2E+02 0.0048 23.3 5.4 47 128-175 58-109 (155)
152 PTZ00393 protein tyrosine phos 24.0 97 0.0021 27.2 3.6 39 125-163 158-198 (241)
153 KOG4053 Ataxin-1, involved in 24.0 1.8E+02 0.0038 24.9 4.9 45 46-90 50-94 (224)
154 KOG0330 ATP-dependent RNA heli 23.9 1.9E+02 0.0041 27.6 5.6 35 137-172 300-334 (476)
155 PRK07322 adenine phosphoribosy 23.8 1.4E+02 0.003 24.5 4.4 31 136-166 119-152 (178)
156 PRK05298 excinuclease ABC subu 23.7 1E+02 0.0022 30.8 4.2 48 125-173 434-481 (652)
157 COG2519 GCD14 tRNA(1-methylade 23.7 1.6E+02 0.0034 26.2 4.8 43 124-166 175-217 (256)
158 PRK00553 ribose-phosphate pyro 23.6 1.2E+02 0.0027 27.7 4.3 33 136-168 217-252 (332)
159 PRK02458 ribose-phosphate pyro 23.5 1.1E+02 0.0023 27.9 4.0 32 136-167 217-251 (323)
160 PRK08341 amidophosphoribosyltr 23.5 1.1E+02 0.0023 29.3 4.0 34 136-169 333-369 (442)
161 KOG0572 Glutamine phosphoribos 23.5 1.1E+02 0.0024 29.0 4.0 32 136-167 355-389 (474)
162 PRK07349 amidophosphoribosyltr 23.4 1.2E+02 0.0026 29.5 4.4 33 136-168 376-411 (500)
163 TIGR03372 putres_am_tran putre 23.4 1.6E+02 0.0035 27.9 5.3 53 126-178 122-179 (442)
164 TIGR01203 HGPRTase hypoxanthin 23.4 1.3E+02 0.0029 24.3 4.1 33 136-168 83-118 (166)
165 cd05563 PTS_IIB_ascorbate PTS_ 23.1 94 0.002 21.8 2.8 21 139-159 1-22 (86)
166 PRK00278 trpC indole-3-glycero 22.8 4.4E+02 0.0096 22.9 7.6 40 124-165 198-237 (260)
167 TIGR01134 purF amidophosphorib 22.7 1.3E+02 0.0028 28.6 4.5 35 136-170 337-374 (442)
168 PRK12560 adenine phosphoribosy 22.6 2.1E+02 0.0045 23.7 5.2 30 134-163 111-143 (187)
169 PRK00129 upp uracil phosphorib 22.5 1.5E+02 0.0032 25.1 4.3 32 136-167 123-157 (209)
170 COG0462 PrsA Phosphoribosylpyr 22.4 1.5E+02 0.0033 27.1 4.6 33 136-168 213-248 (314)
171 PF02879 PGM_PMM_II: Phosphogl 22.2 1.9E+02 0.0041 21.0 4.5 28 137-164 21-48 (104)
172 PRK00934 ribose-phosphate pyro 21.8 1.4E+02 0.0029 26.6 4.2 33 136-168 203-238 (285)
173 PLN02541 uracil phosphoribosyl 21.7 1.6E+02 0.0036 25.7 4.6 43 136-178 156-208 (244)
174 PTZ00110 helicase; Provisional 21.6 2E+02 0.0043 28.0 5.6 36 136-172 376-411 (545)
175 PF07879 PHB_acc_N: PHB/PHA ac 21.6 1E+02 0.0023 21.4 2.6 30 46-75 15-45 (64)
176 KOG0685 Flavin-containing amin 21.5 1.5E+02 0.0033 28.8 4.5 35 136-171 20-54 (498)
177 PRK08525 amidophosphoribosyltr 21.5 1.3E+02 0.0027 28.8 4.1 34 136-169 339-375 (445)
178 PF13399 LytR_C: LytR cell env 21.5 1.7E+02 0.0036 20.8 3.9 28 137-164 3-32 (90)
179 PRK14665 mnmA tRNA-specific 2- 21.4 1.3E+02 0.0029 27.8 4.2 30 134-163 2-31 (360)
180 PRK05500 bifunctional orotidin 21.3 1.8E+02 0.004 28.1 5.2 31 133-163 389-422 (477)
181 KOG0333 U5 snRNP-like RNA heli 21.2 1.1E+02 0.0025 30.1 3.7 35 137-172 517-551 (673)
182 PRK05793 amidophosphoribosyltr 20.9 1.4E+02 0.003 28.7 4.3 34 136-169 352-388 (469)
183 TIGR01091 upp uracil phosphori 20.8 1.6E+02 0.0035 24.7 4.3 32 136-167 121-155 (207)
184 PLN02293 adenine phosphoribosy 20.8 1.8E+02 0.0039 24.2 4.5 31 134-164 122-155 (187)
185 PRK06388 amidophosphoribosyltr 20.8 1.3E+02 0.0028 29.0 4.1 35 136-170 355-392 (474)
186 TIGR00631 uvrb excinuclease AB 20.5 1.3E+02 0.0029 30.1 4.2 49 124-173 429-477 (655)
187 PLN02369 ribose-phosphate pyro 20.4 1.6E+02 0.0034 26.5 4.3 34 136-169 201-237 (302)
188 KOG1716 Dual specificity phosp 20.4 1.7E+02 0.0036 26.0 4.4 28 135-162 153-183 (285)
189 PRK08117 4-aminobutyrate amino 20.4 2E+02 0.0043 26.8 5.2 55 125-179 90-146 (433)
190 PLN02440 amidophosphoribosyltr 20.4 1.3E+02 0.0029 28.9 4.0 35 136-170 339-376 (479)
191 TIGR01367 pyrE_Therm orotate p 20.2 1.8E+02 0.0039 24.1 4.4 31 135-165 103-136 (187)
192 PRK03094 hypothetical protein; 20.1 3.5E+02 0.0076 19.6 5.8 23 137-159 55-77 (80)
No 1
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.88 E-value=1.5e-22 Score=154.95 Aligned_cols=105 Identities=26% Similarity=0.271 Sum_probs=86.8
Q ss_pred cccccCCceecHHHHHHHhhCC-CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCC
Q 026624 42 LKIRADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (235)
Q Consensus 42 ~~~~~~~~~Is~~el~~~l~~~-~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (235)
+++....+.|+++++.++++++ +.+|||||++.||..+|||||+|+|+.++..
T Consensus 3 ~~~~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~-------------------------- 56 (109)
T cd01533 3 VEAVRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVL-------------------------- 56 (109)
T ss_pred ccccccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHH--------------------------
Confidence 3455667889999999998765 5789999999999999999999999964421
Q ss_pred CCChHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcc-eeEccccHHhhccCC
Q 026624 121 KQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQN-IACITSGLQTVKPGT 179 (235)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~n-v~~L~GG~~~W~~~g 179 (235)
....+ ..+++++||+||++|.||..+++.|+..||+| +++|+||+.+|+.+|
T Consensus 57 -----~~~~l--~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 57 -----RVGEL--APDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -----HHHhc--CCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 11111 12457899999999999999999999999988 999999999998764
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.88 E-value=1e-22 Score=153.76 Aligned_cols=100 Identities=23% Similarity=0.401 Sum_probs=83.3
Q ss_pred ceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (235)
..|+++++.+++++++.+|||||++.||+.+|||||+|+|+.++... .+.+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~----------------------------~~~~~ 53 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF----------------------------PFWLD 53 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHh----------------------------HHHHH
Confidence 36899999999987789999999999999999999999999754320 01111
Q ss_pred HHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
.. ...+++++||+||++|.||..+++.|...||+|+++|+||+.+|.+
T Consensus 54 ~~-~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 54 EN-LDLLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hh-hhhcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 11 1236789999999999999999999999999999999999999974
No 3
>PLN02160 thiosulfate sulfurtransferase
Probab=99.87 E-value=1.3e-21 Score=156.49 Aligned_cols=117 Identities=27% Similarity=0.471 Sum_probs=94.9
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCc--EEeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSS--YHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGA--vnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (235)
.+..|+++++.+++++ +.+|||||++.||..|||||| +|+|+..+....+ ..++
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~-----------------------l~~~ 68 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGR-----------------------VKNQ 68 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcccc-----------------------cCCH
Confidence 5778999999998876 468999999999999999999 8999854322111 1123
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCccccccc
Q 026624 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGSTE 187 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~~~ 187 (235)
++...+...++++++||+||++|.||..++..|...||+++++|+||+.+|++.|+|+....+
T Consensus 69 ~~~~~~~~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 131 (136)
T PLN02160 69 EFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEE 131 (136)
T ss_pred HHHHHHHhccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcccccc
Confidence 443334444577899999999999999999999999999999999999999999999986544
No 4
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.87 E-value=7.3e-22 Score=148.26 Aligned_cols=98 Identities=19% Similarity=0.351 Sum_probs=86.0
Q ss_pred ceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (235)
+.|+++|+.++++++ .+|||+|+++||..+|||||+|+|+.++...
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------------------------- 47 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------------------------- 47 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc---------------------------------
Confidence 568999999998875 8999999999999999999999999755320
Q ss_pred HHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcc
Q 026624 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDS 182 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~ 182 (235)
...++++++||+||++|.+|..++..|.+.||+|+++|+||+.+|+..++|+
T Consensus 48 --~~~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 48 --GLPLVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred --ccCCCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 1135778899999999999999999999999999999999999999988764
No 5
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.87 E-value=5.5e-22 Score=151.57 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=91.0
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
..+.|+++++.+.+++++.+|||+|++.||+.+|||||+|+|+..+.+
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~-------------------------------- 50 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA-------------------------------- 50 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH--------------------------------
Confidence 567899999999998777899999999999999999999999853321
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCccccc
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGS 185 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~ 185 (235)
....++++++|++||.+|.+|..++..|+..||+|+++|+||+.+|+..++|+++.
T Consensus 51 ---~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 51 ---FMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred ---HHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 22336778899999999999999999999999999999999999999999887753
No 6
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.85 E-value=4.4e-21 Score=144.38 Aligned_cols=99 Identities=22% Similarity=0.406 Sum_probs=81.8
Q ss_pred ecHHHHHHHhhC-CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH
Q 026624 51 VNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (235)
Q Consensus 51 Is~~el~~~l~~-~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (235)
|+++|+.+++++ ++.+|||||++.||+.+|||||+|+|+.++... + .+....
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-----~----------------------~~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD-----F----------------------LEIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH-----H----------------------HHhhHH
Confidence 678999999877 468999999999999999999999999755320 0 000122
Q ss_pred HhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 130 ~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
....++++++||+||.+|.||..++..|+..||+ +++|.||+.+|+.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~~ 100 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWSE 100 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhcC
Confidence 3455778899999999999999999999999998 9999999999963
No 7
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.9e-21 Score=148.89 Aligned_cols=114 Identities=25% Similarity=0.426 Sum_probs=99.5
Q ss_pred cCCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 026624 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (235)
..+..++.++++++++.++.++||||.++||..+|||.++|||+..... .....|++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-----------------------~~~l~~~e 76 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-----------------------AGALKNPE 76 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-----------------------ccccCCHH
Confidence 4667899999999999988999999999999999999999999964332 22355789
Q ss_pred HHHHHhhcCCC-CCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcc
Q 026624 126 FVQSVKSQFSP-ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDS 182 (235)
Q Consensus 126 ~~~~~~~~~~~-~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~ 182 (235)
|...+....++ ++.||++|++|.||..|...|..+||+||.++.||+.+|.+.++|.
T Consensus 77 F~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 77 FLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred HHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 98887776654 5699999999999999999999999999999999999999998764
No 8
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.85 E-value=1.4e-21 Score=154.17 Aligned_cols=123 Identities=21% Similarity=0.418 Sum_probs=83.4
Q ss_pred ecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHH
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQS 129 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 129 (235)
|+++|+.++++ ++.+|||||++.||..||||||+|+|+..+......++..+..+++. +...|....... +++...
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREA--AIELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHH--HHHHHHHHHhhhHHHHHHH
Confidence 68999999988 57899999999999999999999999965432111011100000000 000000000011 223332
Q ss_pred Hh-hcCCCCCeEEEEeC-CChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 130 VK-SQFSPESKLLVVCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 130 ~~-~~~~~~~~VVvyC~-~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
.. ..++++++||+||+ +|.||..+++.|+..|| ++++|+||+.+|+.
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 22 36788999999997 68999999999999999 69999999999974
No 9
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.84 E-value=1e-20 Score=147.13 Aligned_cols=104 Identities=23% Similarity=0.425 Sum_probs=86.9
Q ss_pred ecHHHHHHHhhC-CCcEEEEeCChhhHh-hccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 026624 51 VNAEEAKNLIAV-ERYAVLDVRDNSQYN-RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (235)
Q Consensus 51 Is~~el~~~l~~-~~~~ILDvR~~~ey~-~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (235)
|+++++.+++++ ++.+|||||++.||+ .+|||||+|+|+.++... ..++++..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~-------------------------~~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM-------------------------EINPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc-------------------------ccCHHHHH
Confidence 689999999987 579999999999999 999999999999765431 11123444
Q ss_pred HHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCC
Q 026624 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g 179 (235)
.+....+++++||+||++|.+|..+++.|...||+|++++.||+++|+++-
T Consensus 56 ~l~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~ 106 (117)
T cd01522 56 ELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAA 106 (117)
T ss_pred HHHhhCCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCCC
Confidence 444445778999999999999999999999999999999999999998763
No 10
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.84 E-value=1.5e-20 Score=142.40 Aligned_cols=102 Identities=24% Similarity=0.332 Sum_probs=82.1
Q ss_pred cHHHHHHHhh-CCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHH
Q 026624 52 NAEEAKNLIA-VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQS 129 (235)
Q Consensus 52 s~~el~~~l~-~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 129 (235)
+++++.++++ .++.+|||+|++.||..||||||+|+|+.++.+.. ..+ +++...
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~------------------------~~~~~~~~~~ 57 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL------------------------ALSEEEFEKK 57 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh------------------------CCCHHHHHHH
Confidence 6788999887 67899999999999999999999999997653210 111 233332
Q ss_pred Hhh-cCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 130 VKS-QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 130 ~~~-~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
+.. ..+++++||+||.+|.+|..+++.|...||+||++|+||+.+|.+
T Consensus 58 ~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 58 YGFPKPSKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred hcccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 222 235688999999999999999999999999999999999999964
No 11
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.84 E-value=1.1e-20 Score=140.49 Aligned_cols=93 Identities=27% Similarity=0.446 Sum_probs=81.5
Q ss_pred eecHHHHHHHhhC-CCcEEEEeCChhhHhh--ccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 50 YVNAEEAKNLIAV-ERYAVLDVRDNSQYNR--AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 50 ~Is~~el~~~l~~-~~~~ILDvR~~~ey~~--ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
.|+++++.+++++ ++.+|||+|++.+|+. +|||||+|+|+.++.+
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~-------------------------------- 48 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDD-------------------------------- 48 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHH--------------------------------
Confidence 3789999998877 5799999999999999 9999999999974421
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
....++++++||+||++|.+|..+++.|+..||+|+++|+||+.+|+.
T Consensus 49 ---~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~~ 96 (96)
T cd01444 49 ---WLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWRR 96 (96)
T ss_pred ---HHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence 123467889999999999999999999999999999999999999963
No 12
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.83 E-value=1.7e-20 Score=141.61 Aligned_cols=97 Identities=22% Similarity=0.368 Sum_probs=81.2
Q ss_pred eecHHHHHHHhhCC--CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHH
Q 026624 50 YVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (235)
Q Consensus 50 ~Is~~el~~~l~~~--~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 127 (235)
.|+++++.++++.+ +.+|||+|++.||+.+|||||+|+|+.++.+ +.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~-------------------------------~~ 49 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE-------------------------------RS 49 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH-------------------------------HH
Confidence 37899999999865 6899999999999999999999999865431 11
Q ss_pred HHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC
Q 026624 128 QSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 128 ~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~ 178 (235)
..+. ..+++++||+||++|.||..++..|...||+++++|+||+.+|+..
T Consensus 50 ~~~~-~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 50 KELD-SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred HHhc-ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 1111 1246889999999999999999999999999999999999999764
No 13
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.83 E-value=2.4e-20 Score=139.34 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=76.8
Q ss_pred ecHHHHHHHhhCC--CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 026624 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (235)
Q Consensus 51 Is~~el~~~l~~~--~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (235)
|+++|+.++++++ +++|||||++.||+.+|||||+|+|+.++... ..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~-------------------------------~~ 49 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQE-------------------------------TD 49 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHH-------------------------------HH
Confidence 6889999998764 57899999999999999999999998644210 00
Q ss_pred HHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
.+. -.++++||+||++|.||..++..|...||+ +++|+||+.+|..
T Consensus 50 ~~~--~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 50 HFA--PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred Hhc--ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 011 124678999999999999999999999998 9999999999963
No 14
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.83 E-value=1.5e-20 Score=141.34 Aligned_cols=102 Identities=24% Similarity=0.423 Sum_probs=81.3
Q ss_pred ecHHHHHHHhhCCCcEEEEeCChhhH-hhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDNSQY-NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~~ey-~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (235)
|+++++.+++++++.+|||+|++.+| ..+|||||+|+|+..+....+. +..+
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~------------------------~~~~--- 53 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADP------------------------DSPY--- 53 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCc------------------------cccc---
Confidence 68899999988778999999999998 5799999999998654310000 0000
Q ss_pred HhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCC
Q 026624 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 130 ~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g 179 (235)
....++++++||+||++|.+|..+++.|+..||+|+++|+||+.+|...|
T Consensus 54 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 54 HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred cccCCCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 01235778999999999999999999999999999999999999997653
No 15
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.83 E-value=1.3e-20 Score=147.31 Aligned_cols=111 Identities=22% Similarity=0.335 Sum_probs=88.2
Q ss_pred cCCceecHHHHHHHhhC-CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 026624 46 ADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~-~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (235)
.....|+++++.+++++ ++.+|||+|++.||+.+|||||+|+|+..+.+. ...+.
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~--~~~~~---------------------- 60 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK--AAELK---------------------- 60 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh--hhhhh----------------------
Confidence 45668999999999876 578999999999999999999999999765421 00000
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCC-cceeEccccHHhhccCCCc
Q 026624 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGF-QNIACITSGLQTVKPGTFD 181 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~-~nv~~L~GG~~~W~~~g~p 181 (235)
.. ......++++++||+||++|.||..++..|+..|| +|+++|+||+.+|+....+
T Consensus 61 ~~-~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 61 SL-QELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred hh-hhcccccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 00 00112357789999999999999999999999999 6999999999999887533
No 16
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.83 E-value=1.9e-20 Score=141.63 Aligned_cols=102 Identities=18% Similarity=0.334 Sum_probs=79.4
Q ss_pred ecHHHHHHHhhCC--CcEEEEeCChhhHhhccCCCcEEeccccccCC-CcchhhhhhhccccccccccCCCCCCCChHHH
Q 026624 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQD-NDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (235)
Q Consensus 51 Is~~el~~~l~~~--~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 127 (235)
|+++|++++++++ +++|||||++.||..+|||||+|+|+.++... ..... ....+.+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~--------------------~~~~~~~ 60 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQ--------------------LPTVPRL 60 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccc--------------------ccchHHH
Confidence 6899999999763 68999999999999999999999998754321 00000 0011111
Q ss_pred HHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 128 QSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 128 ~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
.. ..+++||+||.+|.+|..+++.|+..||+||++|+||+.+|+.
T Consensus 61 ---~~--~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~~ 105 (105)
T cd01525 61 ---EN--YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALKP 105 (105)
T ss_pred ---Hh--hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhcC
Confidence 11 2367899999999999999999999999999999999999963
No 17
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.83 E-value=6e-20 Score=139.14 Aligned_cols=107 Identities=25% Similarity=0.492 Sum_probs=82.5
Q ss_pred cHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHh
Q 026624 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (235)
Q Consensus 52 s~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 131 (235)
||+|+++++++++++|||+|++.+|..+|||||+|+|+..+........ .....+......
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLS-------------------EDKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCH-------------------HHHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccc-------------------cccccccccccc
Confidence 6899999997789999999999999999999999999965411100000 001123334445
Q ss_pred hcCCCCCeEEEEeCCChhHHHHHHH-----HHHcCCcceeEccccHHhhcc
Q 026624 132 SQFSPESKLLVVCQEGLRSAAAANK-----LEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 132 ~~~~~~~~VVvyC~~G~rS~~aa~~-----L~~~G~~nv~~L~GG~~~W~~ 177 (235)
..++++++||+||.+|.++..++.. |...||++|++|+||+++|.+
T Consensus 62 ~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 5567889999999999888877776 889999999999999999975
No 18
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.83 E-value=4.7e-20 Score=141.52 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=84.6
Q ss_pred ceecHHHHHHHhhC--CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 49 NYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 49 ~~Is~~el~~~l~~--~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
..++++|+.+++++ ++.+|||+|++.+|..+|||||+|+|...+..
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~-------------------------------- 55 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICE-------------------------------- 55 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhh--------------------------------
Confidence 46999999999876 35899999999999999999999999864321
Q ss_pred HHHHhhcCCCCCeEEEEeCCC--hhHHHHHHHHHHcCCcceeEccccHHhhccCCCcc
Q 026624 127 VQSVKSQFSPESKLLVVCQEG--LRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDS 182 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G--~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~ 182 (235)
.....++++++||+||++| .+|..+++.|+..||+ +++|+||+.+|+..|+|+
T Consensus 56 --~~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 56 --NATAKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred --HhhhcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 1123567889999999977 4899999999999995 999999999999998764
No 19
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.82 E-value=6e-20 Score=150.97 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=87.0
Q ss_pred cCCceecHHHHHHHhhCCCcEEEEeCChh----hHhhc---------cCCCcEEeccccccCCCcchhhhhhhccccccc
Q 026624 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNS----QYNRA---------HIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSG 112 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~~~~ILDvR~~~----ey~~g---------hIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~ 112 (235)
.+...|+++|+.+++++++.+|||||++. ||..| |||||+|+|+.....-.
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~---------------- 96 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLA---------------- 96 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCC----------------
Confidence 56788999999999988889999999866 45444 99999999964221100
Q ss_pred cccCCCCCCCC-hHHHHHHhh--cCCCCCeEEEEeCCCh-hHHHHHHHHHHcCCcceeEccccHHhhccCCCcc
Q 026624 113 LFFGLPFTKQN-PEFVQSVKS--QFSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKPGTFDS 182 (235)
Q Consensus 113 ~~~g~~~~~~~-~~~~~~~~~--~~~~~~~VVvyC~~G~-rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~ 182 (235)
... +.+...+.. ..+++++||+||.+|. +|..+++.|...||+||++|+||+.+|+.+|+|+
T Consensus 97 --------~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 97 --------PAWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred --------CchhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 001 112222222 2267899999999886 8999999999999999999999999999999874
No 20
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.82 E-value=3e-20 Score=137.50 Aligned_cols=89 Identities=26% Similarity=0.472 Sum_probs=77.2
Q ss_pred ecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHH
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (235)
++++|+.+++ .++.+|||+|++++|..+|||||+|+|+.++.+ .
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~-----------------------------------~ 44 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRD-----------------------------------R 44 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHH-----------------------------------H
Confidence 4789999988 457899999999999999999999999864321 1
Q ss_pred hhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhc
Q 026624 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (235)
Q Consensus 131 ~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~ 176 (235)
...++++++||+||++|.++..++..|+..|| ++++|+||+.+|+
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 22467788999999999999999999999999 8999999999996
No 21
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.82 E-value=1.1e-19 Score=141.25 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=87.1
Q ss_pred ecHHHHHHHhhCCCcEEEEeCCh-------hhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDN-------SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~-------~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (235)
|+++++.+++++++.+|||+|++ .+|+.+|||||+|+|+.++.... .....+..+
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~------------------~~~~~~~~~ 63 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDK------------------SPGPHMLPS 63 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccC------------------CCCCCCCCC
Confidence 78999999998878899999999 99999999999999997654310 001112333
Q ss_pred hHHHHHHhh--cCCCCCeEEEEeCC-ChhHHHHHHHHHHcCCcceeEccccHHhhccCC
Q 026624 124 PEFVQSVKS--QFSPESKLLVVCQE-GLRSAAAANKLEEAGFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 124 ~~~~~~~~~--~~~~~~~VVvyC~~-G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g 179 (235)
.+.+.+... .++++++||+||++ |.+|..+++.|+..||+|+++|+||+.+|+.+|
T Consensus 64 ~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 64 PEEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 333333333 35788999999998 599999999999999999999999999998764
No 22
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.82 E-value=5.4e-20 Score=142.00 Aligned_cols=105 Identities=19% Similarity=0.328 Sum_probs=84.6
Q ss_pred ecHHHHHHHhhCCCcEEEEeCChhhHhh-----------ccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDNSQYNR-----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~~ey~~-----------ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
++++++.+++++++.+|||+|++.||.. +|||||+|+|+.++.... .
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----------------------~ 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----------------------G 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----------------------C
Confidence 5789999988776799999999999987 999999999997554310 1
Q ss_pred CCCChHHHHHHhhc--CCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
...+++.+...... ++++++||+||++|.+|..+++.|+..||+|+++|+||+.+|..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 12233444433333 46789999999999999999999999999999999999999974
No 23
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.81 E-value=1.1e-19 Score=135.97 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=72.0
Q ss_pred CCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcCCCCCeEE
Q 026624 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLL 141 (235)
Q Consensus 62 ~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~VV 141 (235)
+++.+|||||++.+|+.+|||||+|+|+.++.. +.+.++. ....+++++||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~----------------------------~~~~~~~-~~~~~~~~~iv 60 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVL----------------------------RSQELQA-LEAPGRATRYV 60 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcC----------------------------CHHHHHH-hhcCCCCCCEE
Confidence 457899999999999999999999999865432 1122222 23356789999
Q ss_pred EEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 142 VVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 142 vyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
+||++|.+|..+++.|+..||+||++|+||+.+|+.
T Consensus 61 v~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 61 LTCDGSLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEeCChHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999999999999963
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.81 E-value=1.2e-19 Score=142.14 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=79.8
Q ss_pred ceecHHHHHHHhhCC------CcEEEEeCChhhHhhccCCCcEEeccc-cccCCCcchhhhhhhccccccccccCCCCCC
Q 026624 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLF-IENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (235)
Q Consensus 49 ~~Is~~el~~~l~~~------~~~ILDvR~~~ey~~ghIpGAvnip~~-~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (235)
..|+++++.++++++ +++|||||++.||+.||||||+|+|+. ++..
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~--------------------------- 54 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEE--------------------------- 54 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHH---------------------------
Confidence 469999999998763 689999999999999999999999985 2221
Q ss_pred CChHHHHHH-hhcCCCCCeEEEEeC-CChhHHHHHHHHHHc------------CCcceeEccccHHhhc
Q 026624 122 QNPEFVQSV-KSQFSPESKLLVVCQ-EGLRSAAAANKLEEA------------GFQNIACITSGLQTVK 176 (235)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~VVvyC~-~G~rS~~aa~~L~~~------------G~~nv~~L~GG~~~W~ 176 (235)
.+.... ...++++++||+||+ +|.||..+++.|+.. ||.+|++|+||+.+|.
T Consensus 55 ---~~~~~~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 55 ---FFLDKPGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ---HHHHhhcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 010000 012578899999997 999999999999985 9999999999999984
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.79 E-value=2.9e-19 Score=131.48 Aligned_cols=98 Identities=27% Similarity=0.354 Sum_probs=76.6
Q ss_pred CCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH-HhhcCCCCCeE
Q 026624 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS-VKSQFSPESKL 140 (235)
Q Consensus 62 ~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~V 140 (235)
+++.+|||+|++.||..+|||||+|+|+..+........ ...+... .....+++++|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~i 59 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELD----------------------ILEFEELLKRLGLDKDKPV 59 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcC----------------------HHHHHHHHHHcCCCCCCeE
Confidence 357899999999999999999999999976543211000 0011111 12345678999
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCc
Q 026624 141 LVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFD 181 (235)
Q Consensus 141 VvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p 181 (235)
|+||.+|.++..+++.|...||+++++|+||+.+|...+.|
T Consensus 60 v~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 60 VVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999999999988754
No 26
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.79 E-value=3.1e-19 Score=144.24 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=80.7
Q ss_pred HHHHhhC-CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcC
Q 026624 56 AKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF 134 (235)
Q Consensus 56 l~~~l~~-~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 134 (235)
+.++++. .+++|||||++.+|+.+|||||+|+|..++. .....+
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~-----------------------------------~~l~~l 46 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLA-----------------------------------QALEKL 46 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHH-----------------------------------HHHHhc
Confidence 4455544 3589999999999999999999999875332 123345
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcccccc
Q 026624 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGST 186 (235)
Q Consensus 135 ~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~~ 186 (235)
+++++||+||.+|.+|..+++.|+..||++|++|+||+.+|+..|+|++...
T Consensus 47 ~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~ 98 (145)
T cd01535 47 PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGE 98 (145)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCC
Confidence 6778999999999999999999999999999999999999999999988543
No 27
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.78 E-value=7.8e-19 Score=130.70 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=70.0
Q ss_pred HhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcC-CCC
Q 026624 59 LIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF-SPE 137 (235)
Q Consensus 59 ~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~ 137 (235)
++++++++|||+|++.||..+|||||+|+|+..+.. .....+ +++
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~----------------------------------~~~~~~~~~~ 50 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLEL----------------------------------DAWVRIPRRD 50 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHh----------------------------------hhHhhCCCCC
Confidence 455678999999999999999999999999864321 011123 348
Q ss_pred CeEEEEeCCChh--HHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 138 SKLLVVCQEGLR--SAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 138 ~~VVvyC~~G~r--S~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
++||+||++|.+ |..+++.|+..||+|+++|+||+.+|++
T Consensus 51 ~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 51 TPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 899999999876 6899999999999999999999999974
No 28
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.78 E-value=1.6e-18 Score=138.95 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=84.5
Q ss_pred ecHHHHHHHhh----CCCcEEEEeCCh--------hhHhh------------ccCCCcEEeccccccCCCcchhhhhhhc
Q 026624 51 VNAEEAKNLIA----VERYAVLDVRDN--------SQYNR------------AHIKSSYHVPLFIENQDNDLGTIIKRTV 106 (235)
Q Consensus 51 Is~~el~~~l~----~~~~~ILDvR~~--------~ey~~------------ghIpGAvnip~~~l~~~~~~~~~~~~~~ 106 (235)
|+++++++.++ +++++|||+|+. .+|.. ||||||+|+|+.++.... +
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~--~------- 71 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA--G------- 71 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC--C-------
Confidence 57899999998 468999999987 89988 999999999986543210 0
Q ss_pred cccccccccCCCCCCCChHHHHHHhh--cCCCCCeEEEEeCC---ChhHHHHHHHHHHcCCcceeEccccHHhhc
Q 026624 107 HNNFSGLFFGLPFTKQNPEFVQSVKS--QFSPESKLLVVCQE---GLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (235)
Q Consensus 107 ~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~VVvyC~~---G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~ 176 (235)
..+...++++.+..... .++++++||+||++ |.+|.+++|.|+..||+||++|+||+.+|+
T Consensus 72 ---------~~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 72 ---------FEESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred ---------CCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 01222334334444444 46788999999986 789999999999999999999999999996
No 29
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.77 E-value=8.4e-19 Score=135.09 Aligned_cols=101 Identities=26% Similarity=0.423 Sum_probs=78.7
Q ss_pred CceecHHHHHHHhhC--CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 026624 48 VNYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (235)
Q Consensus 48 ~~~Is~~el~~~l~~--~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (235)
++.|+++++.+++.+ ++.+|||||++ ||..+|||||+|+|+.++... . ++
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~--~-------------------------~~ 52 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQ--L-------------------------NQ 52 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhC--H-------------------------HH
Confidence 467999999999876 45789999999 999999999999999755321 0 11
Q ss_pred HHHHHhhcCCCCCeEEEEeC-CChhHHHHHHHHHH--------cCCcceeEccccHHhhccC
Q 026624 126 FVQSVKSQFSPESKLLVVCQ-EGLRSAAAANKLEE--------AGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~-~G~rS~~aa~~L~~--------~G~~nv~~L~GG~~~W~~~ 178 (235)
+.. .. ..+++++||+||. +|.|+..++..|.+ .||.||++|+||+.+|++.
T Consensus 53 ~~~-~~-~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 53 LVQ-LL-SGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HHH-HH-hcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 111 11 1256789999998 77888888877654 4999999999999999865
No 30
>PRK01415 hypothetical protein; Validated
Probab=99.77 E-value=1.3e-18 Score=151.65 Aligned_cols=104 Identities=19% Similarity=0.356 Sum_probs=88.2
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
.-+.|+|+++.+++++++.+|||||++.||+.||||||+|+|...+.+. +++
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~----------------------------~~~ 161 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQF----------------------------PAW 161 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhhh----------------------------HHH
Confidence 4578999999999998899999999999999999999999998755320 111
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCC
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g 179 (235)
... ...++++++|++||.+|.||..++..|.+.||+||++|.||+.+|.+..
T Consensus 162 ~~~-~~~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 162 VQQ-NQELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred Hhh-hhhhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 111 1235678999999999999999999999999999999999999998764
No 31
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.77 E-value=1.1e-18 Score=126.65 Aligned_cols=88 Identities=30% Similarity=0.445 Sum_probs=74.7
Q ss_pred HHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcCC
Q 026624 56 AKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFS 135 (235)
Q Consensus 56 l~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 135 (235)
+.++++.++..|||+|++.+|+.+|||||+|+|+..+... . .....+
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~------------------------------~---~~~~~~ 48 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEER------------------------------A---ALLELD 48 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhH------------------------------H---HhhccC
Confidence 4555666789999999999999999999999999754320 0 123457
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhc
Q 026624 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (235)
Q Consensus 136 ~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~ 176 (235)
++++||+||++|.++..+++.|+..||+++++|+||+++|+
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 88999999999999999999999999999999999999995
No 32
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.77 E-value=3.1e-18 Score=152.00 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=93.4
Q ss_pred eecHHHHHHHhhCCCcEEEEeCC----------hhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 50 YVNAEEAKNLIAVERYAVLDVRD----------NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 50 ~Is~~el~~~l~~~~~~ILDvR~----------~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
.++++++.+++++++++|||+|+ +.+|..||||||+|+|+..+.... ...++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~------------------~~~~~ 67 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHT------------------SPLPH 67 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCC------------------CCCCC
Confidence 48999999999988999999996 788999999999999986543210 01223
Q ss_pred CCCChHHHHHHhhc--CCCCCeEEEEeCCCh-hHHHHHHHHHHcCCcceeEccccHHhhccCCCccccc
Q 026624 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGS 185 (235)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~VVvyC~~G~-rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~ 185 (235)
....++.+.+.... ++++++||+||.++. .+.++++.|+..||+||++|+||+.+|++.++|++..
T Consensus 68 ~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 136 (281)
T PRK11493 68 MMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG 136 (281)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence 33444444444444 578999999999776 4778899999999999999999999999999998743
No 33
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.76 E-value=5.4e-18 Score=153.26 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=95.1
Q ss_pred ceecHHHHHHHhhCCCcEEEEeC--------C-hhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVR--------D-NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR--------~-~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
..|+++++.+++++++++|||+| + ..+|..||||||+|+++.++... ....++
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~------------------~~~~~~ 83 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDR------------------TTDLPH 83 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCC------------------CCCcCC
Confidence 57999999999988889999996 3 37899999999999998654431 012334
Q ss_pred CCCChHHHHHHhhc--CCCCCeEEEEeCCCh-hHHHHHHHHHHcCCcceeEccccHHhhccCCCccccc
Q 026624 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGS 185 (235)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~VVvyC~~G~-rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~ 185 (235)
..+.++.+.+.+.. ++++++||+||++|. .+.+++|.|+..||+||++|+||+.+|+++|+|++..
T Consensus 84 ~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 84 MLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 45555555555555 457899999999775 5679999999999999999999999999999998754
No 34
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.75 E-value=4.8e-18 Score=153.26 Aligned_cols=105 Identities=17% Similarity=0.342 Sum_probs=87.7
Q ss_pred cCCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 026624 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (235)
.....|+++++.+++++++++|||||++.||+.||||||+|+|+..+.+. ++
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~----------------------------~~ 160 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF----------------------------PP 160 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh----------------------------HH
Confidence 44578999999999988889999999999999999999999999765421 11
Q ss_pred HHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCC
Q 026624 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g 179 (235)
.+.... ...++++||+||.+|.||..++..|...||+||++|+||+.+|....
T Consensus 161 ~l~~~~-~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~~ 213 (314)
T PRK00142 161 WVEENL-DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGEDP 213 (314)
T ss_pred HHHHhc-CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHhh
Confidence 111111 23578999999999999999999999999999999999999998763
No 35
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.75 E-value=5e-18 Score=156.54 Aligned_cols=103 Identities=19% Similarity=0.344 Sum_probs=89.0
Q ss_pred CceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHH
Q 026624 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (235)
Q Consensus 48 ~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 127 (235)
++.|+++++.+++++ +.+|||||+++||+.+|||||+|+|+..+.. .
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~-------------------------------~- 48 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLEL-------------------------------R- 48 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHH-------------------------------H-
Confidence 568999999999876 5899999999999999999999999864321 1
Q ss_pred HHHhh-cCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCccccc
Q 026624 128 QSVKS-QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGS 185 (235)
Q Consensus 128 ~~~~~-~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~ 185 (235)
... ..+++++||+||++|.||..+++.|+..||+|+++|+||+.+|+..++|++..
T Consensus 49 --~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 49 --IETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred --HhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 111 12678999999999999999999999999999999999999999999998765
No 36
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.75 E-value=6e-18 Score=148.69 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=85.3
Q ss_pred cCCceecHHHHHHHhhCC------CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 46 ADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~------~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
.....|+++++.+++++. +.+|||||++.||+.||||||+|+|+.++.+.
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~------------------------ 162 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEF------------------------ 162 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhh------------------------
Confidence 345789999999988652 47999999999999999999999999755321
Q ss_pred CCCChHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC
Q 026624 120 TKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~ 178 (235)
++++......+ ++++|++||.+|.||..++..|+..||+||++|.||+.+|.+.
T Consensus 163 ----~~~l~~~~~~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 163 ----PEALAAHRADL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ----HHHHHhhhhhc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 11222222223 6889999999999999999999999999999999999999875
No 37
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.75 E-value=9.3e-18 Score=163.11 Aligned_cols=119 Identities=11% Similarity=0.140 Sum_probs=94.5
Q ss_pred ceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (235)
..|+++|+++++++++++|||+|++.+|..||||||+|+|+....... ...++..+.++.++
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~------------------~~~~~~lp~~~~l~ 70 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK------------------PPAPGLLPDTADLE 70 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC------------------CCCCCCCCCHHHHH
Confidence 359999999999988999999999999999999999999986432110 01122233333344
Q ss_pred HHhhc--CCCCCeEEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHHhhccCCCccccc
Q 026624 129 SVKSQ--FSPESKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGS 185 (235)
Q Consensus 129 ~~~~~--~~~~~~VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~ 185 (235)
..+.. ++++++||+||++| .+|.+++|.|+..||++|++|+||+.+|+.+|+|++..
T Consensus 71 ~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~ 130 (610)
T PRK09629 71 QLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD 130 (610)
T ss_pred HHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence 44444 47899999999976 58999999999999999999999999999999998643
No 38
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.8e-18 Score=127.59 Aligned_cols=99 Identities=32% Similarity=0.508 Sum_probs=81.3
Q ss_pred HHHHHHHhhCCCcEEEEeCChhhHhhccCCC-cEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHh
Q 026624 53 AEEAKNLIAVERYAVLDVRDNSQYNRAHIKS-SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (235)
Q Consensus 53 ~~el~~~l~~~~~~ILDvR~~~ey~~ghIpG-Avnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 131 (235)
..........++.+|||||++.||+.+|||+ ++|+|..++.+.. ...
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~-------------------------------~~~- 56 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE-------------------------------NLL- 56 (110)
T ss_pred HHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhh-------------------------------ccc-
Confidence 3333444445689999999999999999999 9999998765310 000
Q ss_pred hcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcccc
Q 026624 132 SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVG 184 (235)
Q Consensus 132 ~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~ 184 (235)
. .+++++||+||++|.||..++..|+.+||++++++.||+.+|...++|...
T Consensus 57 ~-~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 57 E-LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred c-cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 0 467899999999999999999999999999888999999999999988653
No 39
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.72 E-value=1.7e-17 Score=127.93 Aligned_cols=98 Identities=23% Similarity=0.364 Sum_probs=73.3
Q ss_pred ceecHHHHHHHhhCC------CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCC
Q 026624 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (235)
Q Consensus 49 ~~Is~~el~~~l~~~------~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 122 (235)
+.|+++|++++++++ +.+|||||++ ||+.+|||||+|+|+.++.+. .
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~--~------------------------ 54 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQT--L------------------------ 54 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHH--H------------------------
Confidence 568999999999874 6899999999 999999999999999754310 0
Q ss_pred ChHHHHHHhhcCCCCCeEEEEeCC-ChhHHHHHHHHH----HcCC--cceeEccccHHhhc
Q 026624 123 NPEFVQSVKSQFSPESKLLVVCQE-GLRSAAAANKLE----EAGF--QNIACITSGLQTVK 176 (235)
Q Consensus 123 ~~~~~~~~~~~~~~~~~VVvyC~~-G~rS~~aa~~L~----~~G~--~nv~~L~GG~~~W~ 176 (235)
++..... ...+.++||+||.+ |.||..++..|. ..|| .++++|+||+.+|.
T Consensus 55 -~~~~~~~--~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 55 -PQVYALF--SLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred -HHHHHHh--hhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 0111111 11345789999996 678887776654 3475 68999999999995
No 40
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.71 E-value=4.1e-17 Score=147.53 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=88.6
Q ss_pred eecHHHHHHHhhCCCcEEEEeCChhhH-----------hhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCC
Q 026624 50 YVNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (235)
Q Consensus 50 ~Is~~el~~~l~~~~~~ILDvR~~~ey-----------~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~ 118 (235)
.++.+++.+.+++++.+|||+|++.|| ..||||||+|+|+..+.+..
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~---------------------- 248 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS---------------------- 248 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC----------------------
Confidence 378899999888778899999999988 46999999999997654311
Q ss_pred CCCCChHHHHHHhh--cCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC-CCccc
Q 026624 119 FTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG-TFDSV 183 (235)
Q Consensus 119 ~~~~~~~~~~~~~~--~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~-g~p~~ 183 (235)
....+.+.+..... .++++++||+||++|.||..+++.|+..||+||++|+||+.+|... .+|++
T Consensus 249 ~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~ 316 (320)
T PLN02723 249 QTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVA 316 (320)
T ss_pred CCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCcc
Confidence 01223233333333 4678899999999999999999999999999999999999999876 35554
No 41
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.71 E-value=1.8e-17 Score=151.14 Aligned_cols=129 Identities=21% Similarity=0.413 Sum_probs=93.6
Q ss_pred cHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHHH
Q 026624 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSV 130 (235)
Q Consensus 52 s~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ 130 (235)
+.+++.+++. ++.+|||||++.||..||||||+|+|+.+..+...+++++++.++.+ +...|......+ .+...+.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~--a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFA--AIALGHALVAGNIAAHREEA 80 (345)
T ss_pred cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHH--HHHhhhhhcchhHHHHHHHH
Confidence 4667777654 47899999999999999999999999977666666777777643221 111222222222 2222323
Q ss_pred hhcCC-CCCeEEEEeC-CChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcccc
Q 026624 131 KSQFS-PESKLLVVCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVG 184 (235)
Q Consensus 131 ~~~~~-~~~~VVvyC~-~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~ 184 (235)
...++ ++++||+||. +|.||..+++.|...|| ++++|+||+++|+..+.+...
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 33333 7889999996 78999999999999999 589999999999988765543
No 42
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.70 E-value=1.4e-17 Score=149.93 Aligned_cols=118 Identities=21% Similarity=0.425 Sum_probs=88.0
Q ss_pred CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC-hHHHHHHhhcCCCCCeEEE
Q 026624 64 RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSVKSQFSPESKLLV 142 (235)
Q Consensus 64 ~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~VVv 142 (235)
+..|||||++.||..||||||+|+|+.+..+...+++++|+.++ +.+.-.|......+ ++.+.......++++.||+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~--~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGP--FAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccH--HHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 46899999999999999999999999877666677787776422 22222233333333 3344444444455666999
Q ss_pred EeC-CChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcccc
Q 026624 143 VCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVG 184 (235)
Q Consensus 143 yC~-~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~ 184 (235)
||. +|.||..+++.|+..|| ++++|+||+.+|+..+.+...
T Consensus 80 yC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~ 121 (311)
T TIGR03167 80 YCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLE 121 (311)
T ss_pred EECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhh
Confidence 996 79999999999999999 699999999999988765543
No 43
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.70 E-value=5.1e-17 Score=150.70 Aligned_cols=101 Identities=21% Similarity=0.374 Sum_probs=86.7
Q ss_pred cCCceecHHHHHHHhhCC-CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 026624 46 ADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~-~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (235)
...+.|+++|++++++++ +.+|||+|+++||+.+|||||+|+|+.++...
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~----------------------------- 334 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSG----------------------------- 334 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcch-----------------------------
Confidence 345679999999998764 67999999999999999999999999754320
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCC
Q 026624 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g 179 (235)
.....++++++||+||++|.||..+++.|++.||+||++|+||+.+|+...
T Consensus 335 ----~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~ 385 (392)
T PRK07878 335 ----EALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQV 385 (392)
T ss_pred ----hHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhc
Confidence 012346788999999999999999999999999999999999999998875
No 44
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.70 E-value=4.5e-17 Score=144.55 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=86.1
Q ss_pred ecHHHHHHHhhCCCcEEEEeCChhhHh-----------hccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~~ey~-----------~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
++.+++...+++++.+|||+|+++||. .||||||+|+|+.++.++..
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~---------------------- 212 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGE---------------------- 212 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCC----------------------
Confidence 455666666666678999999999995 69999999999976543210
Q ss_pred CCCChHHHHHHh--hcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc-CCCcccc
Q 026624 120 TKQNPEFVQSVK--SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP-GTFDSVG 184 (235)
Q Consensus 120 ~~~~~~~~~~~~--~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~-~g~p~~~ 184 (235)
..+++.+.... ..++++++||+||++|.||..++..|+..||+|+++|+||+.+|.. .++|++.
T Consensus 213 -~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~ 279 (281)
T PRK11493 213 -LKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEP 279 (281)
T ss_pred -cCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCC
Confidence 11222222222 2467888999999999999999999999999999999999999997 6788763
No 45
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.6e-16 Score=141.12 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=99.1
Q ss_pred CCceecHHHHHHHhhCC-----CcEEEEeCCh--hhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 47 DVNYVNAEEAKNLIAVE-----RYAVLDVRDN--SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~-----~~~ILDvR~~--~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
....|+++++.+.+.++ +..+++++.. .+|..+|||||+++++..+..+. .++|+
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~------------------~~~~~ 70 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDP------------------VPLPH 70 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCC------------------CCCCC
Confidence 34569999999999866 5566665555 88999999999999998765431 12577
Q ss_pred CCCChHHHHHHhhc--CCCCCeEEEEeC-CChhHHHHHHHHHHcCCcceeEccccHHhhccCCCcccc
Q 026624 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVG 184 (235)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~VVvyC~-~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~ 184 (235)
+.++++.+.+.+.. +.+|++||+|++ ++..|.+++|.|+..|++||++|+||+++|+++++|++.
T Consensus 71 ~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 71 MLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 88887777777665 578999999997 567899999999999999999999999999999999985
No 46
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.69 E-value=5.3e-17 Score=124.25 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcCCCCCeEEE
Q 026624 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLV 142 (235)
Q Consensus 63 ~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~VVv 142 (235)
.+-+|||+|+++||+.+|||||+|+|+.++.+ .+..+ ..+++++||+
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~-------------------------------~l~~l--~~~~~~~IVl 65 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKE-------------------------------RIATA--VPDKNDTVKL 65 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHH-------------------------------HHHhc--CCCCCCeEEE
Confidence 35679999999999999999999999864321 11111 1245688999
Q ss_pred EeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC
Q 026624 143 VCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 143 yC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~ 178 (235)
||++|.||..+++.|...||+++++ .||+++|..-
T Consensus 66 yC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~~ 100 (104)
T PRK10287 66 YCNAGRQSGQAKEILSEMGYTHAEN-AGGLKDIAMP 100 (104)
T ss_pred EeCCChHHHHHHHHHHHcCCCeEEe-cCCHHHHhhh
Confidence 9999999999999999999999987 6999999653
No 47
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.69 E-value=1.3e-16 Score=121.45 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=66.8
Q ss_pred CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcCCCCCeEEE
Q 026624 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLV 142 (235)
Q Consensus 63 ~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~VVv 142 (235)
....+||+|+++||..+|||||+|+|+.++.+ ..... ..+++++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~-------------------------------~l~~~--~~~~~~~vvl 63 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKE-------------------------------HIATA--VPDKNDTVKL 63 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHH-------------------------------HHHHh--CCCCCCeEEE
Confidence 45689999999999999999999999964421 11111 1246788999
Q ss_pred EeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 143 VCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 143 yC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
||++|.||..++..|...||+|++++ ||+++|..
T Consensus 64 yC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 64 YCNAGRQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred EeCCCHHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 99999999999999999999999885 99999964
No 48
>PRK07411 hypothetical protein; Validated
Probab=99.67 E-value=1.8e-16 Score=146.88 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=85.7
Q ss_pred cCCceecHHHHHHHhhCC--CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC
Q 026624 46 ADVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~--~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (235)
...+.|+++|+.++++.+ +.+|||||+++||+.+|||||+|+|+.++.+..
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~--------------------------- 331 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP--------------------------- 331 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc---------------------------
Confidence 456789999999998764 579999999999999999999999997654310
Q ss_pred hHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCCCc
Q 026624 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGTFD 181 (235)
Q Consensus 124 ~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p 181 (235)
... ....++++++||+||.+|.||..+++.|+..||++ +.|+||+.+|++...|
T Consensus 332 --~~~-~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 332 --GVE-KVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred --chH-HHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 001 11235678899999999999999999999999985 6899999999887543
No 49
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.66 E-value=4.5e-16 Score=151.39 Aligned_cols=113 Identities=12% Similarity=0.145 Sum_probs=90.2
Q ss_pred eecHHHHHHHhhCCCcEEEEeCChhhHh--------hccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCC
Q 026624 50 YVNAEEAKNLIAVERYAVLDVRDNSQYN--------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (235)
Q Consensus 50 ~Is~~el~~~l~~~~~~ILDvR~~~ey~--------~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (235)
.++.+++++.+++++++|||+|+++||. .||||||+|+|+.++.++. +. .
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~--~~--------------------l 205 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA--RN--------------------L 205 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC--CC--------------------C
Confidence 5789999999988889999999999994 6999999999986543211 00 1
Q ss_pred CChHHHHHHhh--cCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC-CCcccc
Q 026624 122 QNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG-TFDSVG 184 (235)
Q Consensus 122 ~~~~~~~~~~~--~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~-g~p~~~ 184 (235)
..++.+.+... .++++++||+||++|.+|..+++.|+..||+||++|+||+.+|... .+|++.
T Consensus 206 k~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~ 271 (610)
T PRK09629 206 RIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEV 271 (610)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCcccc
Confidence 22233333333 3578899999999999999999999999999999999999999875 678764
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.62 E-value=1.1e-15 Score=140.02 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=79.3
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
....++++++.+.. ++.+|||+|+++||+.+|||||+|+|+.++... +
T Consensus 259 ~~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~------------------------------~ 306 (355)
T PRK05597 259 FGEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREG------------------------------A 306 (355)
T ss_pred cccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhc------------------------------c
Confidence 34578888888543 367999999999999999999999999754321 0
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhcc
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~ 177 (235)
....++++++||+||++|.||..+++.|+..||+|+++|+||+.+|+.
T Consensus 307 ---~~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 307 ---NPPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred ---ccccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 011246788999999999999999999999999999999999999975
No 51
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.9e-15 Score=134.18 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=91.0
Q ss_pred eecHHHHHHHhhCCCcEEEEeCChhhHhh----------ccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNR----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 50 ~Is~~el~~~l~~~~~~ILDvR~~~ey~~----------ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
.++.++.+..++.+..+|||+|++++|.. ||||||+|+|+.++.++. +
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~----------------------~ 214 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDG----------------------G 214 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCC----------------------C
Confidence 46678888888888899999999999998 999999999998776521 1
Q ss_pred CCCChHHHHHHh--hcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccCC-Cccc
Q 026624 120 TKQNPEFVQSVK--SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPGT-FDSV 183 (235)
Q Consensus 120 ~~~~~~~~~~~~--~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g-~p~~ 183 (235)
....++....+. ..++++++||+||.+|.+|+..+..|+.+|+.++++++|++.+|.... .|++
T Consensus 215 ~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~ 281 (285)
T COG2897 215 LFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVE 281 (285)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccc
Confidence 122344444444 457899999999999999999999999999988899999999998764 3554
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.62 E-value=3.1e-15 Score=118.15 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=78.3
Q ss_pred ecHHHHHHHhhC--CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHH
Q 026624 51 VNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (235)
Q Consensus 51 Is~~el~~~l~~--~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (235)
|+++++.++++. ++.+|||+|++.+|+.+|||||+|+|+..+... +. ..+.. ....+...++...
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~--------~~----~~~~~-~~~~~~~~~~~~~ 68 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRR--------RL----QGGKI-LLQQLLSCPEDRD 68 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHH--------hh----cccch-hhhhhcCCHHHHH
Confidence 789999999975 479999999999999999999999999743210 00 00000 0000111222222
Q ss_pred HHhhcCCCCCeEEEEeCCChh---------HHHHHHHHHH--cCCcceeEccccHHhhccC
Q 026624 129 SVKSQFSPESKLLVVCQEGLR---------SAAAANKLEE--AGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~r---------S~~aa~~L~~--~G~~nv~~L~GG~~~W~~~ 178 (235)
.+.. . ++++||+||+++.+ +..++..|.. .++.+|++|+||+.+|++.
T Consensus 69 ~l~~-~-~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 69 RLRR-G-ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred HHhc-C-CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 2222 2 57899999997764 6677777777 4778899999999999875
No 53
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.56 E-value=8.1e-15 Score=135.05 Aligned_cols=95 Identities=19% Similarity=0.319 Sum_probs=77.4
Q ss_pred ceecHHHHHHHhhCCCcEEEEeCChhhHhhccCC---CcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIK---SSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIp---GAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (235)
..++++|+.+++++++.+|||||++.||+.+||| ||+|+|+.++.+.. +
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~----------------------------~ 322 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA----------------------------D 322 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch----------------------------h
Confidence 4789999999998877899999999999999998 59999997664310 0
Q ss_pred HHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcc-eeEccccHH
Q 026624 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQN-IACITSGLQ 173 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~n-v~~L~GG~~ 173 (235)
... ....++++ +||+||++|.||..++..|++.||++ +++|.||+.
T Consensus 323 ~~~-~l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 323 ILH-ALSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhh-hccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 011 11233444 89999999999999999999999986 999999985
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.36 E-value=6.2e-13 Score=117.44 Aligned_cols=103 Identities=17% Similarity=0.350 Sum_probs=87.3
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
.-+.|+|+++.+++.+++.++||+|+..||+-||..||++.+...+.+ . |++
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre------f----------------------P~~ 162 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE------F----------------------PAW 162 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh------h----------------------HHH
Confidence 356899999999999999999999999999999999999999976643 1 344
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~ 178 (235)
.....+.+ ++++|+.||.+|.|...+...|...||++|+.|+||+-.+.+.
T Consensus 163 v~~~~~~~-~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 163 VEENLDLL-KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred HHHHHHhc-cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 44444443 4679999999999999999999999999999999998776544
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.32 E-value=9.1e-12 Score=109.49 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=95.9
Q ss_pred eecHHHHHHHhhCCCcEEEEeC---------ChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCC
Q 026624 50 YVNAEEAKNLIAVERYAVLDVR---------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (235)
Q Consensus 50 ~Is~~el~~~l~~~~~~ILDvR---------~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (235)
-+++.++.+.+.+++++|||.. ...||...|||||.++.++...+.+. -.+++
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~------------------~~~~~ 67 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS------------------PYRHM 67 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC------------------ccccc
Confidence 4788999999988899999985 34578889999999999976654321 24555
Q ss_pred CCChHHHHHHhhc--CCCCCeEEEEeC--CCh-hHHHHHHHHHHcCCcceeEccccHHhhccCCCcccccc
Q 026624 121 KQNPEFVQSVKSQ--FSPESKLLVVCQ--EGL-RSAAAANKLEEAGFQNIACITSGLQTVKPGTFDSVGST 186 (235)
Q Consensus 121 ~~~~~~~~~~~~~--~~~~~~VVvyC~--~G~-rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~~ 186 (235)
.+.++.+++.... +++++++|||+. .|+ .|.+++|+++..|+++|.+|+||+.+|+.+++|+....
T Consensus 68 lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 68 LPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSK 138 (286)
T ss_pred CccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccc
Confidence 6666665555554 467889999999 676 58899999999999999999999999999999997544
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.27 E-value=8.2e-12 Score=118.82 Aligned_cols=72 Identities=19% Similarity=0.350 Sum_probs=62.5
Q ss_pred CCcEEEEeCChhhHhhccCCC----cEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcCCCCC
Q 026624 63 ERYAVLDVRDNSQYNRAHIKS----SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPES 138 (235)
Q Consensus 63 ~~~~ILDvR~~~ey~~ghIpG----Avnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (235)
++.+|||||+++||+.+|||| |+|+|+.++.. ....+++++
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~-----------------------------------~~~~l~~~~ 450 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLST-----------------------------------QFGDLDQSK 450 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHH-----------------------------------HHhhcCCCC
Confidence 478999999999999999999 99999975431 123467788
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcceeEcc
Q 026624 139 KLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 139 ~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
+||+||.+|.||..++..|...||+||+++.
T Consensus 451 ~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 451 TYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 9999999999999999999999999998875
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=4e-11 Score=107.40 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=80.7
Q ss_pred cccCCceecHHHHHHHhhCC------CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCC
Q 026624 44 IRADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (235)
Q Consensus 44 ~~~~~~~Is~~el~~~l~~~------~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~ 117 (235)
....++.|++++++.++++. .++|||+|-+.||..|||+||+|++..+..++-
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~--------------------- 209 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF--------------------- 209 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh---------------------
Confidence 33578899999999999762 367999999999999999999999987554320
Q ss_pred CCCCCChHHHHHH-hhcCCCCCeEEEEeC-CChhHHHHHHHHHH------------cCCcceeEccccHHhhccCCC
Q 026624 118 PFTKQNPEFVQSV-KSQFSPESKLLVVCQ-EGLRSAAAANKLEE------------AGFQNIACITSGLQTVKPGTF 180 (235)
Q Consensus 118 ~~~~~~~~~~~~~-~~~~~~~~~VVvyC~-~G~rS~~aa~~L~~------------~G~~nv~~L~GG~~~W~~~g~ 180 (235)
|.... ...-.+...+|+||. +-.|...+|..|+. .-|..+|+|+||++.|.....
T Consensus 210 --------f~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~ 278 (325)
T KOG3772|consen 210 --------FLLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP 278 (325)
T ss_pred --------hccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence 00000 000012356899999 77888899999984 245789999999999987754
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.03 E-value=2.4e-10 Score=102.96 Aligned_cols=103 Identities=17% Similarity=0.318 Sum_probs=83.8
Q ss_pred cCCceecHHHHHHHhhC-CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCCh
Q 026624 46 ADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~-~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (235)
..-.+|++.|+++++++ +..++||||++.||+-.|+|.|+|||+.+++... +
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~--------------------------~- 366 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRS--------------------------G- 366 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhh--------------------------h-
Confidence 44567999999999987 6899999999999999999999999998776421 0
Q ss_pred HHHHHHhhcC-CCCCeEEEEeCCChhHHHHHHHHHHcCCc-ceeEccccHHhhccC
Q 026624 125 EFVQSVKSQF-SPESKLLVVCQEGLRSAAAANKLEEAGFQ-NIACITSGLQTVKPG 178 (235)
Q Consensus 125 ~~~~~~~~~~-~~~~~VVvyC~~G~rS~~aa~~L~~~G~~-nv~~L~GG~~~W~~~ 178 (235)
.+....+ ...++|+++|..|..|..++++|++..++ ++.-+-||+++|...
T Consensus 367 ---~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 367 ---KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred ---hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 1112223 24577999999999999999999987764 677888999999775
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.60 E-value=9.2e-08 Score=84.44 Aligned_cols=94 Identities=16% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCcEEEEeCChhhHh-----------hccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH-H
Q 026624 63 ERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS-V 130 (235)
Q Consensus 63 ~~~~ILDvR~~~ey~-----------~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~ 130 (235)
.++..||.|..++|. .+|||||+|+|+.++....- +..+.++.... .
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g---------------------~~k~~edl~~~f~ 229 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDG---------------------FIKPAEDLKHLFA 229 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccccc---------------------ccCCHHHHHHHHH
Confidence 469999999999885 47999999999987654210 11111222211 1
Q ss_pred hhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhhccC
Q 026624 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 131 ~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W~~~ 178 (235)
..++..++++++-|..|..+...+-.|.+.| .++.+++|++.+|.-.
T Consensus 230 ~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred hcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhhc
Confidence 2345668999999999999999999999999 7899999999999864
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.32 E-value=1.5e-06 Score=77.93 Aligned_cols=107 Identities=13% Similarity=0.243 Sum_probs=80.5
Q ss_pred cCCceecHHHHHHHhhCC------CcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCC
Q 026624 46 ADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~------~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (235)
..+++|+++.++..++.. +-+|||.|=+.||..|||-+||||.-.+-.
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l-------------------------- 292 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKL-------------------------- 292 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHH--------------------------
Confidence 567899999999999862 346999999999999999999999764211
Q ss_pred CCCChHHHHHHhhc-CCCCCeEEEEeC-CChhHHHHHHHHHHc------------CCcceeEccccHHhhccCCCccccc
Q 026624 120 TKQNPEFVQSVKSQ-FSPESKLLVVCQ-EGLRSAAAANKLEEA------------GFQNIACITSGLQTVKPGTFDSVGS 185 (235)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~~~~VVvyC~-~G~rS~~aa~~L~~~------------G~~nv~~L~GG~~~W~~~g~p~~~~ 185 (235)
...+..+ +.--.-+|++|. +..|+...|.+|+.. =|..|++|+||++++-+....+..+
T Consensus 293 -------~~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~lCdP 365 (427)
T COG5105 293 -------GLLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDLCDP 365 (427)
T ss_pred -------HHHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCccccCc
Confidence 1112222 222356899999 788999999999874 2478999999999987775555443
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.60 E-value=1.3e-05 Score=71.18 Aligned_cols=116 Identities=19% Similarity=0.388 Sum_probs=73.6
Q ss_pred HHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCC--hHHHHHHhh
Q 026624 55 EAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN--PEFVQSVKS 132 (235)
Q Consensus 55 el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~ 132 (235)
....++. .+..+||||.|.||..|+.|+++|+|.....+...+++-+++-++.+=.++ |...++-+ ...+.. ..
T Consensus 7 ~~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~al--g~~~vcG~i~~~~l~a-sk 82 (334)
T COG2603 7 DYRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKAL--GHALVCGEIRQQRLEA-SK 82 (334)
T ss_pred HHHHHHh-cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHH--HHHHHHhHHHHHHHHH-HH
Confidence 3333333 478899999999999999999999999877666677777776322221111 11111111 111111 11
Q ss_pred cCCCCCeEEEEeC-CChhHHHHHHHH-HHcCCcceeEccccHHhh
Q 026624 133 QFSPESKLLVVCQ-EGLRSAAAANKL-EEAGFQNIACITSGLQTV 175 (235)
Q Consensus 133 ~~~~~~~VVvyC~-~G~rS~~aa~~L-~~~G~~nv~~L~GG~~~W 175 (235)
..-.+.++-++|. +|.||...+.+| ...|.+ .--+.||.++.
T Consensus 83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKal 126 (334)
T COG2603 83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKAL 126 (334)
T ss_pred HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHH
Confidence 1223466777798 678999999999 677875 44566888765
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.37 E-value=0.021 Score=45.38 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=57.7
Q ss_pred ceecHHHHHHHhhCCCcEEEEeCChhhHhhcc----------CCC--cEEeccccccCCCcchhhhhhhccccccccccC
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAH----------IKS--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR~~~ey~~gh----------IpG--Avnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g 116 (235)
..++++++..+.+.+--.|||.|+..|.+... -+| -+|+|+..-. +.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~----~~----------------- 71 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD----IT----------------- 71 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC----CC-----------------
Confidence 56889999887666667999999887643211 123 3456653100 00
Q ss_pred CCCCCCChHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHH-HcCCcceeEccccHHhhccCCCccc
Q 026624 117 LPFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLE-EAGFQNIACITSGLQTVKPGTFDSV 183 (235)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~-~~G~~nv~~L~GG~~~W~~~g~p~~ 183 (235)
..+-+.+....+. .+++|++||.+|.|+..++..+. ..|...-.++ +.-++.|+.++
T Consensus 72 ----~~~v~~f~~~~~~--~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i~----~~~~~~G~~~~ 129 (135)
T TIGR01244 72 ----PDDVETFRAAIGA--AEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEIV----RRAQAAGYDLS 129 (135)
T ss_pred ----HHHHHHHHHHHHh--CCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHHH----HHHHHcCCCcc
Confidence 0011112222332 35789999999999887765443 3465422232 23345555554
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.09 E-value=0.031 Score=43.08 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=39.7
Q ss_pred ceecHHHHHHHhhCCCcEEEEeCChhhHhh----------ccCC--CcEEeccccccCCCcchhhhhhhccccccccccC
Q 026624 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR----------AHIK--SSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (235)
Q Consensus 49 ~~Is~~el~~~l~~~~~~ILDvR~~~ey~~----------ghIp--GAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g 116 (235)
..++++++..+-+.+--.||+.|+..|-.. ..=- .-+|+|+.--
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~------------------------ 68 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG------------------------ 68 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT------------------------
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC------------------------
Confidence 478999999988887789999998755211 0001 2467776411
Q ss_pred CCCCCCChHHH---HHHhhcCCCCCeEEEEeCCChhHHHHHHH
Q 026624 117 LPFTKQNPEFV---QSVKSQFSPESKLLVVCQEGLRSAAAANK 156 (235)
Q Consensus 117 ~~~~~~~~~~~---~~~~~~~~~~~~VVvyC~~G~rS~~aa~~ 156 (235)
..+++.. ...+... .++|++||.+|.||...+..
T Consensus 69 ----~~~~~~v~~f~~~l~~~--~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 69 ----AITEEDVEAFADALESL--PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp ----T--HHHHHHHHHHHHTT--TTSEEEE-SCSHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHhC--CCCEEEECCCChhHHHHHHH
Confidence 1111222 2233333 46899999999999866553
No 64
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.38 E-value=0.013 Score=51.94 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=64.9
Q ss_pred eecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHHHHH
Q 026624 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (235)
Q Consensus 50 ~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (235)
.++++|+...+..++++++|.|+ +..||.+|+|+-+.-++ .+|.++-++ +++-+.++......
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalm--------lrrl~~g~l-----~~ra~~p~~~d~~~ 67 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALM--------LRRLTGGNL-----PVRALFPRSCDDKR 67 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHH--------HHHHhCCCC-----cceeccCCcccccc
Confidence 46888999888888999999999 67899999998776433 233221111 11111111111110
Q ss_pred HhhcCCCCCeEEEEeCC--ChhHH-HHH-------HHHHHcCCcceeEccccHHhhccC
Q 026624 130 VKSQFSPESKLLVVCQE--GLRSA-AAA-------NKLEEAGFQNIACITSGLQTVKPG 178 (235)
Q Consensus 130 ~~~~~~~~~~VVvyC~~--G~rS~-~aa-------~~L~~~G~~nv~~L~GG~~~W~~~ 178 (235)
.... -+..++|.|+.+ .+... .++ ..++..|+. ++.|.||+..++++
T Consensus 68 ~~~~-c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 68 FPAR-CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred cccc-CCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 1111 134678999885 22111 112 344556875 89999999888766
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.31 E-value=0.076 Score=43.17 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCcccccccccccCCceecHHHHHHHhhCCCcEEEEeCChhhHhhc---cCCCcE--Eeccc
Q 026624 34 GKSICRRNLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRA---HIKSSY--HVPLF 90 (235)
Q Consensus 34 ~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~g---hIpGAv--nip~~ 90 (235)
+...+|..+.+......+++++...+.+-+=-.|||.|++.|.+.. .++|.. |+|+.
T Consensus 13 g~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~ 74 (164)
T PF13350_consen 13 GRRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIF 74 (164)
T ss_dssp --TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS
T ss_pred eeeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeeccc
Confidence 4456677777778888999999988776556799999999998763 445544 44543
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.15 E-value=0.016 Score=56.09 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=66.3
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
..++|+++++..+ ....++|.|...||.++|+++++|+|...-+ .+...+ .+
T Consensus 620 ~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~e--a~l~~~-----------------------~~ 671 (725)
T KOG1093|consen 620 HCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHE--ADLDWL-----------------------RF 671 (725)
T ss_pred cCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchH--HHHHHh-----------------------hc
Confidence 4567888877655 4678999999999999999999999997221 111100 00
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHHhh
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTV 175 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~~W 175 (235)
.+ ......+++++++.....-+++....+..+-+.+..++.+|+++.
T Consensus 672 l~--~~~~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 672 LP--GIVCSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred ch--HhHHhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 00 011123566666665555677777777776788888999998844
No 67
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=90.92 E-value=1.3 Score=34.11 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=18.7
Q ss_pred CCCCeEEEEeCCCh-hHHHH--HHHHHHcCC
Q 026624 135 SPESKLLVVCQEGL-RSAAA--ANKLEEAGF 162 (235)
Q Consensus 135 ~~~~~VVvyC~~G~-rS~~a--a~~L~~~G~ 162 (235)
..+++|+|+|..|. ||..+ ++.+...|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 34679999999886 77644 444444554
No 68
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=88.50 E-value=2.8 Score=32.48 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCCCCeEEEEeCCCh-hHHH--HHHHHHHcCCc
Q 026624 134 FSPESKLLVVCQEGL-RSAA--AANKLEEAGFQ 163 (235)
Q Consensus 134 ~~~~~~VVvyC~~G~-rS~~--aa~~L~~~G~~ 163 (235)
...+++|+|+|..|. ||.. +++.+...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 456789999999885 7664 44556666763
No 69
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=83.89 E-value=1.5 Score=41.82 Aligned_cols=110 Identities=11% Similarity=0.194 Sum_probs=58.7
Q ss_pred ecHHHHHHHhhC--C--CcEEEEeCChhhHhhccCCCcEEeccccccCC-CcchhhhhhhccccccccccCCCCCCCChH
Q 026624 51 VNAEEAKNLIAV--E--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQD-NDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (235)
Q Consensus 51 Is~~el~~~l~~--~--~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (235)
|++-|+.+.-+- + ..-|||.|+.++|..||+-.|.|+.-....+. ..++...+..+ ..+
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl----------------~aq 372 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLL----------------CAQ 372 (669)
T ss_pred hhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHH----------------HHH
Confidence 555555433221 2 57899999999999999999999887544321 11111110000 000
Q ss_pred HHHHHhhcCCCCCeEEEEeCCC----hhHHHHHHHHHHcCCcceeEccccHHhhc
Q 026624 126 FVQSVKSQFSPESKLLVVCQEG----LRSAAAANKLEEAGFQNIACITSGLQTVK 176 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G----~rS~~aa~~L~~~G~~nv~~L~GG~~~W~ 176 (235)
...........++++.++..+. ..-.++...+-..+-.-|.++.||+....
T Consensus 373 rqtie~~s~aggeHlcfmGsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 373 RQTIERDSNAGGEHLCFMGSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHhhhccccCCcceEEEeccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 0000001122346777765432 22334444444455446889999998765
No 70
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=83.26 E-value=0.24 Score=44.96 Aligned_cols=40 Identities=8% Similarity=-0.006 Sum_probs=33.2
Q ss_pred ecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEecccc
Q 026624 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFI 91 (235)
Q Consensus 51 Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~~ 91 (235)
-+++++++.+.. ...++|+|....|..+||||++|+|...
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~ 55 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQ 55 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHH
Confidence 356777777765 4678999999999999999999999853
No 71
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.68 E-value=5.1 Score=31.55 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=22.5
Q ss_pred CceecHHHHHHHhhCCCcEEEEeCChhh
Q 026624 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQ 75 (235)
Q Consensus 48 ~~~Is~~el~~~l~~~~~~ILDvR~~~e 75 (235)
..+++++++.+.-..+-..||-.|+..|
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgE 40 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGE 40 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCC
Confidence 3578999999887777788999998655
No 72
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=81.12 E-value=3.8 Score=37.15 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=32.1
Q ss_pred CCceecHHHHHHHhhCCCcEEEEeCChhhHhh---ccCC
Q 026624 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIK 82 (235)
Q Consensus 47 ~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~---ghIp 82 (235)
+...+...++.+.+.+.+..|||+|+..+|.. |||+
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 45678999999999888899999999999998 8888
No 73
>PLN02727 NAD kinase
Probab=79.81 E-value=5.3 Score=41.38 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=23.4
Q ss_pred CceecHHHHHHHhhCCCcEEEEeCChhh
Q 026624 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQ 75 (235)
Q Consensus 48 ~~~Is~~el~~~l~~~~~~ILDvR~~~e 75 (235)
..++++++++.+.+.+--.||+.|+..|
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E 293 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIV 293 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCc
Confidence 4579999998887777679999998776
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=76.77 E-value=7.6 Score=29.65 Aligned_cols=30 Identities=43% Similarity=0.675 Sum_probs=20.0
Q ss_pred CCCCCeEEEEeCCCh-hHH--HHHHHHHHcCCc
Q 026624 134 FSPESKLLVVCQEGL-RSA--AAANKLEEAGFQ 163 (235)
Q Consensus 134 ~~~~~~VVvyC~~G~-rS~--~aa~~L~~~G~~ 163 (235)
..++.+|+|+|..|. ||. .+++.+...|++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 346789999999876 655 344455556663
No 75
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=71.00 E-value=2.4 Score=33.03 Aligned_cols=91 Identities=20% Similarity=0.121 Sum_probs=50.5
Q ss_pred EEEEeCCC-hhHHHHHHHHHHc----CCcceeEccccHHhhccCCCccccccccccccccceeeecCcccceecceeehh
Q 026624 140 LLVVCQEG-LRSAAAANKLEEA----GFQNIACITSGLQTVKPGTFDSVGSTELQDAGKAGLVTVQGKISAVLGTVLICA 214 (235)
Q Consensus 140 VVvyC~~G-~rS~~aa~~L~~~----G~~nv~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 214 (235)
|+++|.++ -||..|...++.. +-.++.+...|..+| .+.|+.. .........|+-.-....+.+-...+-.+
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~--~~~~~~~-~a~~~l~~~gid~~~~~s~~l~~~~~~~~ 77 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW--PGEPVDP-RAIAVLKEHGIDISGHRSRQLTEEDLDEA 77 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST--TTSSSTH-HHHHHHHHTTSSCTTSBBCBGGHHHHHHS
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc--ccccccc-hHHHHHHHhCCCcccceeccccccccccC
Confidence 68999965 4999999998888 667899999999887 3323221 11111112232111122222222333345
Q ss_pred hhhcccChhhHHHHhccCC
Q 026624 215 FLFITFFPEQAEKLFQLSP 233 (235)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~ 233 (235)
=+..+.-..+.+++-++-|
T Consensus 78 D~Ii~m~~~~~~~~~~~~~ 96 (138)
T PF01451_consen 78 DLIITMDDSHREELCPLFP 96 (138)
T ss_dssp SEEEESSHHHHHHHHHHHG
T ss_pred CEEEEccHHHhhhhhhhcc
Confidence 5556666666666644433
No 76
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=67.02 E-value=9.6 Score=31.47 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=23.0
Q ss_pred HHHHHhhcCCCCCeEEEEeCCCh-hHH--HHHHHHHHcCC
Q 026624 126 FVQSVKSQFSPESKLLVVCQEGL-RSA--AAANKLEEAGF 162 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G~-rS~--~aa~~L~~~G~ 162 (235)
..+.+.....++++|+|+|..|. ||+ .+||.|...|.
T Consensus 94 ~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 94 IVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 33334444566779999999775 655 34456666454
No 77
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=66.19 E-value=7.5 Score=31.40 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCCeEEEEe-C----CChhHHHHHHHHHHcCCcceeEccccHHh
Q 026624 135 SPESKLLVVC-Q----EGLRSAAAANKLEEAGFQNIACITSGLQT 174 (235)
Q Consensus 135 ~~~~~VVvyC-~----~G~rS~~aa~~L~~~G~~nv~~L~GG~~~ 174 (235)
+++.++++++ + .|..-..++..|+.+|..++..||||-..
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 3444555554 5 36888899999999999999999999644
No 78
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=63.71 E-value=16 Score=30.38 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCCCeEEEEeCCCh-hHHH-HHHHHHHcC
Q 026624 126 FVQSVKSQFSPESKLLVVCQEGL-RSAA-AANKLEEAG 161 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G~-rS~~-aa~~L~~~G 161 (235)
+..++...+..+++|+++|.+|. |+.. ||-.|...|
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 34445555566889999999765 6665 555555555
No 79
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=55.77 E-value=18 Score=28.15 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=28.4
Q ss_pred EEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHHhh
Q 026624 140 LLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQTV 175 (235)
Q Consensus 140 VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~~W 175 (235)
|+++|.++ -||..|...|+...-.++.+..-|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 57899855 4999999999876544688888888877
No 80
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=54.15 E-value=22 Score=28.99 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=24.6
Q ss_pred CCCCeEEEEeCCC---hhHHHHHHHHHHcCCcceeE
Q 026624 135 SPESKLLVVCQEG---LRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 135 ~~~~~VVvyC~~G---~rS~~aa~~L~~~G~~nv~~ 167 (235)
++..+|+++|..| .....+|++|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 6778999999965 4688999999999996 554
No 81
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=40 Score=28.81 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=29.0
Q ss_pred HHHhhcCCC--CCeEEEEeCC---ChhHHHHHHHHHHcCCcceeE
Q 026624 128 QSVKSQFSP--ESKLLVVCQE---GLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 128 ~~~~~~~~~--~~~VVvyC~~---G~rS~~aa~~L~~~G~~nv~~ 167 (235)
+.+.+..+. ..+|+|+|.. |.-...+|++|...||+ |.+
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v 81 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTV 81 (203)
T ss_pred HHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEE
Confidence 334555555 5789999984 55788999999999986 443
No 82
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=51.05 E-value=69 Score=26.08 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=17.2
Q ss_pred CCCCeEEEEeCCCh-hHHHH-HHHHHHc
Q 026624 135 SPESKLLVVCQEGL-RSAAA-ANKLEEA 160 (235)
Q Consensus 135 ~~~~~VVvyC~~G~-rS~~a-a~~L~~~ 160 (235)
.++.+|+|+|..|. ||..+ +..|-..
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45889999999765 66643 4444443
No 83
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=50.22 E-value=24 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.485 Sum_probs=26.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHH----cCCcceeEccccHHhh
Q 026624 137 ESKLLVVCQEGLRSAAAANKLEE----AGFQNIACITSGLQTV 175 (235)
Q Consensus 137 ~~~VVvyC~~G~rS~~aa~~L~~----~G~~nv~~L~GG~~~W 175 (235)
.++|++.|.+|..|..++..+++ .|++ +.+-..+....
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 46899999999987777766654 5774 55555555443
No 84
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=50.18 E-value=29 Score=26.72 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=26.8
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHH
Q 026624 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQ 173 (235)
Q Consensus 138 ~~VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~ 173 (235)
++|+++|.++ -||..|...++..+-+++.+...|..
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 3689999855 48999999898876556666766754
No 85
>COG4033 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.26 E-value=24 Score=26.56 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHcCCcceeEccccHHhhccCCCccccccccccccccceeeecCcccceecceeehhhhhcccChhhHHHH
Q 026624 156 KLEEAGFQNIACITSGLQTVKPGTFDSVGSTELQDAGKAGLVTVQGKISAVLGTVLICAFLFITFFPEQAEKL 228 (235)
Q Consensus 156 ~L~~~G~~nv~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 228 (235)
.+-+..++||+.+++|.+-.....+--..+.+.......-++++.- +|-|..++ -.+-.+|++
T Consensus 23 ~yIekn~~~V~~v~pGy~I~~g~~lIG~ppIpvg~~~~~iifpytK---PCyGtfVl-------~i~~e~eei 85 (102)
T COG4033 23 EYIEKNAEEVYLVPPGYKILPGIFLIGIPPIPVGYSGEAIIFPYTK---PCYGTFVL-------KIKVEAEEI 85 (102)
T ss_pred HHHHhccccEEEcCCcceeccCeeEeccCCcceeecCCEEEEEecc---ccceeEEE-------EecCCHHHH
Confidence 3445567899999999876644432222333333334456667776 89999887 445555554
No 86
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=46.96 E-value=32 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++|+++++ +|.....++..|.+.|-.+|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578999998 89999999999999998877765
No 87
>PRK12361 hypothetical protein; Provisional
Probab=45.80 E-value=33 Score=33.35 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCCCeEEEEeCCCh-hHHH-HHHHHH
Q 026624 135 SPESKLLVVCQEGL-RSAA-AANKLE 158 (235)
Q Consensus 135 ~~~~~VVvyC~~G~-rS~~-aa~~L~ 158 (235)
..+.+|+|+|..|. ||.. ++.+|-
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 45688999999775 5553 333343
No 88
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=44.58 E-value=24 Score=26.53 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=26.1
Q ss_pred eEEEEeCCChhHHHHHHHHHH----cCCcceeEccccHHhh
Q 026624 139 KLLVVCQEGLRSAAAANKLEE----AGFQNIACITSGLQTV 175 (235)
Q Consensus 139 ~VVvyC~~G~rS~~aa~~L~~----~G~~nv~~L~GG~~~W 175 (235)
+|++.|++|..|..++..+++ .|.+ +.+-..+....
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 489999999988888877765 5774 66666665543
No 89
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=44.16 E-value=39 Score=25.18 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 135 ~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
.++++|+++++ +|.....+.+.|++.|.+.+..
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 35789999987 8999999999999999875543
No 90
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=43.73 E-value=18 Score=33.11 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=31.1
Q ss_pred cCCceecHHHHHHHhh------CCCcEEEEeCChhhHhhccCCCcE
Q 026624 46 ADVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSSY 85 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~------~~~~~ILDvR~~~ey~~ghIpGAv 85 (235)
.....++++++.++++ ..+..+||||++. |+-.++|+-.
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr 318 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGR 318 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCC
Confidence 3456799999999884 2478999999988 9989988643
No 91
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=43.13 E-value=65 Score=27.16 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=27.1
Q ss_pred hhcCCCCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 131 KSQFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 131 ~~~~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
.+.+++.++|+|+|. +|.....+|++|...|++ |+++
T Consensus 39 ~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 39 LQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 344555678999998 456788999999887764 6654
No 92
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.81 E-value=33 Score=26.02 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=25.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHH----cCCcceeEccccHHh
Q 026624 138 SKLLVVCQEGLRSAAAANKLEE----AGFQNIACITSGLQT 174 (235)
Q Consensus 138 ~~VVvyC~~G~rS~~aa~~L~~----~G~~nv~~L~GG~~~ 174 (235)
++|++.|.+|..+..++..+++ .|++ +.+-..+...
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 4699999999988777776654 5774 5554455443
No 93
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=42.78 E-value=28 Score=30.71 Aligned_cols=92 Identities=13% Similarity=0.276 Sum_probs=54.2
Q ss_pred eecHHHHHHHhhC----CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChH
Q 026624 50 YVNAEEAKNLIAV----ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (235)
Q Consensus 50 ~Is~~el~~~l~~----~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (235)
.++.+++.++++. +=-.||.|++..|.+..---|+.-+-++.=+ +.+...+.+
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRd-----------------------L~tf~vd~~ 197 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRD-----------------------LKTFEVDLN 197 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBC-----------------------TTTCCBHTH
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcc-----------------------ccCcccChH
Confidence 3566666666542 3468999999999887533344333322100 011122234
Q ss_pred HHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCccee
Q 026624 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~ 166 (235)
....+...++++ ++++..+|..+..-+..|...|++.+.
T Consensus 198 ~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 198 RTEELAPLIPKD--VIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp HHHHHHCHSHTT--SEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred HHHHHHhhCccc--eeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 444566667654 677788999999999999999997543
No 94
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=42.62 E-value=48 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=28.1
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHHhh
Q 026624 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQTV 175 (235)
Q Consensus 138 ~~VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~~W 175 (235)
++|+++|.++ -||..|...++...- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 4799999855 499999999887652 466777787665
No 95
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=42.42 E-value=30 Score=26.97 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.4
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHcCCc-ceeEccccHHhh
Q 026624 139 KLLVVCQEG-LRSAAAANKLEEAGFQ-NIACITSGLQTV 175 (235)
Q Consensus 139 ~VVvyC~~G-~rS~~aa~~L~~~G~~-nv~~L~GG~~~W 175 (235)
+|+++|.++ .||..|...++...-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 689999855 5899998888876543 677888887654
No 96
>PRK10565 putative carbohydrate kinase; Provisional
Probab=42.13 E-value=55 Score=31.72 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=26.8
Q ss_pred hcCCCCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 132 SQFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 132 ~~~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
..+++.++|+|+|. +|.....+|++|...||+ |.++
T Consensus 55 ~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 55 SAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred HhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 33445567999998 456788999999999996 4433
No 97
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=40.94 E-value=44 Score=29.20 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=24.6
Q ss_pred CeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 138 SKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 138 ~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++|+|+|. +|.....+|++|...||+ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 67999998 566788999999999995 5544
No 98
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=40.77 E-value=35 Score=24.15 Aligned_cols=25 Identities=40% Similarity=0.792 Sum_probs=17.1
Q ss_pred eEEEEeCCChhHHHHH-HHH----HHcCCc
Q 026624 139 KLLVVCQEGLRSAAAA-NKL----EEAGFQ 163 (235)
Q Consensus 139 ~VVvyC~~G~rS~~aa-~~L----~~~G~~ 163 (235)
+|++.|.+|..+...+ ..+ ++.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999998655444 544 456764
No 99
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.76 E-value=32 Score=25.41 Aligned_cols=36 Identities=19% Similarity=0.431 Sum_probs=24.7
Q ss_pred eEEEEeCCChhHHHHHHHHHH----cCCcceeEccccHHhh
Q 026624 139 KLLVVCQEGLRSAAAANKLEE----AGFQNIACITSGLQTV 175 (235)
Q Consensus 139 ~VVvyC~~G~rS~~aa~~L~~----~G~~nv~~L~GG~~~W 175 (235)
+|++.|.+|..+..++..+++ .|++ +.+-..++...
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 488999999987777776654 5764 55555555443
No 100
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=39.61 E-value=90 Score=27.02 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=60.9
Q ss_pred CccEEEEEeeCCCccCCCcccccccccccCCceecHHHHHHHhhCCCc---EEEEeC--ChhhHhhccCCCcEEeccccc
Q 026624 18 RTTWLQFETHPGRKVSGKSICRRNLKIRADVNYVNAEEAKNLIAVERY---AVLDVR--DNSQYNRAHIKSSYHVPLFIE 92 (235)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~---~ILDvR--~~~ey~~ghIpGAvnip~~~l 92 (235)
..+|+. +++.+....+..+........+.=.++.+...+++.++ +-+.-| +++.|....|. -.++|+.+.
T Consensus 52 dfnwI~----p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~-h~~l~f~Dg 126 (225)
T KOG1720|consen 52 DFNWII----PDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRLYDAKRFTDAGID-HHDLFFADG 126 (225)
T ss_pred Ccceec----cchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCCCChHHhcccCce-eeeeecCCC
Confidence 367776 66655555554444433445555566666666655432 222222 33445554331 124555432
Q ss_pred cCCCcchhhhhhhccccccccccCCCCCCCChHHHHHHhhcCCCCCeEEEEeCCCh-h--HHHHHHHHHHcCCc
Q 026624 93 NQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQEGL-R--SAAAANKLEEAGFQ 163 (235)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~VVvyC~~G~-r--S~~aa~~L~~~G~~ 163 (235)
.. |....-.+|++.+..... ...|.|+|..|. | -..|++.+...|+.
T Consensus 127 ~t-----------------------P~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 127 ST-----------------------PTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEYGMT 176 (225)
T ss_pred CC-----------------------CCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHhCCC
Confidence 21 111111344443333333 678999999664 4 45778888888884
No 101
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=39.48 E-value=1.4e+02 Score=30.34 Aligned_cols=90 Identities=12% Similarity=0.209 Sum_probs=56.6
Q ss_pred ecHHHHHHHhhC----CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 51 VNAEEAKNLIAV----ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 51 Is~~el~~~l~~----~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
++.+++.++++. +=-.||.|++.+|.+..---|+.-|-+++= .+.+...+.+.
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnR-----------------------dL~tf~vd~~~ 200 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINAR-----------------------NLKDLKVDVNK 200 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCC-----------------------CCccceeCHHH
Confidence 555666666543 235899999999988654344444433210 01111223344
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcce
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv 165 (235)
...+...+++ .+++++.+|..+..-...|.+.|++.+
T Consensus 201 t~~L~~~ip~--~~~~VsESGI~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 201 YNELAADLPD--DVIKVAESGVFGAVEVEDYARAGADAV 237 (695)
T ss_pred HHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 4556666764 467788999999999999999999744
No 102
>PRK13530 arsenate reductase; Provisional
Probab=39.19 E-value=53 Score=25.67 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=26.6
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHH
Q 026624 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQ 173 (235)
Q Consensus 138 ~~VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~ 173 (235)
++|+++|.++ -||..|...++...-+++.+...|+.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 5799999855 48888888887654346777777764
No 103
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.89 E-value=69 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=24.5
Q ss_pred CCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 137 ESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 137 ~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
.++|+|+|. +|.....+|.+|...||+ |.++
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 368999998 456788999999999996 5443
No 104
>PRK10126 tyrosine phosphatase; Provisional
Probab=37.30 E-value=60 Score=25.68 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=28.5
Q ss_pred CeEEEEeCCCh-hHHHHHHHHHHcCCcceeEccccHHhh
Q 026624 138 SKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTV 175 (235)
Q Consensus 138 ~~VVvyC~~G~-rS~~aa~~L~~~G~~nv~~L~GG~~~W 175 (235)
.+|+++|.++. ||..|...++..+- ++.+..-|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998654 99999999988763 466777777665
No 105
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=36.38 E-value=1e+02 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccH
Q 026624 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (235)
Q Consensus 136 ~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~ 172 (235)
++.+++++|.+-......+..|...+. ++..+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 567899999998888899999988765 477888875
No 106
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=36.14 E-value=70 Score=25.97 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=32.7
Q ss_pred HHhhcCCCCCeEEEEeCCCh--hHHHHHHHHHH---cCCcceeEccccHHhh
Q 026624 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEE---AGFQNIACITSGLQTV 175 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~--rS~~aa~~L~~---~G~~nv~~L~GG~~~W 175 (235)
.+...++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 45566777888898888775 68888888877 5777888888986554
No 107
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=35.10 E-value=59 Score=23.90 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=22.9
Q ss_pred eEEEEeCCChh-HHHHHH----HHHHcCCcceeEccccHHhh
Q 026624 139 KLLVVCQEGLR-SAAAAN----KLEEAGFQNIACITSGLQTV 175 (235)
Q Consensus 139 ~VVvyC~~G~r-S~~aa~----~L~~~G~~nv~~L~GG~~~W 175 (235)
+|++.|.+|.. |..++. .|.+.|++ +.+....+...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~ 44 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEI 44 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHH
Confidence 69999999984 444344 44557885 55555555443
No 108
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=34.94 E-value=58 Score=29.32 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++++++++ +|..-..+++.|++.|-++++.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999988 88899999999999999876643
No 109
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=34.73 E-value=53 Score=24.83 Aligned_cols=22 Identities=14% Similarity=0.514 Sum_probs=17.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHH
Q 026624 138 SKLLVVCQEGLRSAAAANKLEE 159 (235)
Q Consensus 138 ~~VVvyC~~G~rS~~aa~~L~~ 159 (235)
++|++.|+.|..+...+..+..
T Consensus 4 kkIllvC~~G~sTSll~~km~~ 25 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRA 25 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 5799999999998888855543
No 110
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=33.79 E-value=86 Score=30.86 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=24.0
Q ss_pred CeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 138 SKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 138 ~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++|+|+|. +|.....+|.+|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 68999998 455688999999999996 5544
No 111
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=33.64 E-value=50 Score=23.64 Aligned_cols=38 Identities=29% Similarity=0.582 Sum_probs=21.7
Q ss_pred CeEEEEeCCChhHHHH-HHHH----HHcCCcceeEccccHHhhc
Q 026624 138 SKLLVVCQEGLRSAAA-ANKL----EEAGFQNIACITSGLQTVK 176 (235)
Q Consensus 138 ~~VVvyC~~G~rS~~a-a~~L----~~~G~~nv~~L~GG~~~W~ 176 (235)
++|+++|++|.-+... +..+ .+.|.. ..+-...+....
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~~ 43 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDELP 43 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhCC
Confidence 3689999998854433 5444 444553 334444555443
No 112
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=33.62 E-value=75 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=26.3
Q ss_pred hHHHHHHhhcCCCCCeEEEEeCCChhH-HHHHHHHHHcCCc
Q 026624 124 PEFVQSVKSQFSPESKLLVVCQEGLRS-AAAANKLEEAGFQ 163 (235)
Q Consensus 124 ~~~~~~~~~~~~~~~~VVvyC~~G~rS-~~aa~~L~~~G~~ 163 (235)
.++++.+.+ .+++++++-++..++ ...+..|+..|++
T Consensus 20 ~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 455554444 368899999977665 7888999999995
No 113
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.51 E-value=72 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCccee-EccccHHhhccC
Q 026624 151 AAAANKLEEAGFQNIA-CITSGLQTVKPG 178 (235)
Q Consensus 151 ~~aa~~L~~~G~~nv~-~L~GG~~~W~~~ 178 (235)
..|-..|+..||+||. +...|..+|.+.
T Consensus 108 ~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 108 EQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 3345668889999876 455678888774
No 114
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=33.27 E-value=96 Score=26.34 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=26.3
Q ss_pred CCCCCeEEEEeC---CChhHHHHHHHHHHcCCc
Q 026624 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (235)
Q Consensus 134 ~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~ 163 (235)
+.++++|+++++ +|.....++..|++.|.+
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~ 147 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLV 147 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 457789999998 899999999999999975
No 115
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=33.18 E-value=65 Score=25.59 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=29.0
Q ss_pred CeEEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHHh
Q 026624 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQT 174 (235)
Q Consensus 138 ~~VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~~ 174 (235)
.+|+++|.++ -||..|-..++...-.++.+...|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 4799999955 499988888887644678888888654
No 116
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=32.98 E-value=64 Score=26.59 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++++|+++++ +|.....++..|++.|-++|+++.
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~av 132 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAV 132 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4688999988 888999999999999988777553
No 117
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.89 E-value=71 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++|+++++ +|.....++..|.+.|-..|+++
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4678999998 89999999999999998877764
No 118
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=31.68 E-value=3.1e+02 Score=25.35 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=53.9
Q ss_pred ecHHHHHHHhhC----CCcEEEEeCChhhHhhc-cCCCcEEecccc--ccCCCcchhhhhhhccccccccccCCCCCCCC
Q 026624 51 VNAEEAKNLIAV----ERYAVLDVRDNSQYNRA-HIKSSYHVPLFI--ENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (235)
Q Consensus 51 Is~~el~~~l~~----~~~~ILDvR~~~ey~~g-hIpGAvnip~~~--l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (235)
++.+++.++++. +=-+||.|.+..|.+.. .+.|+.-|-+++ +.+ ...+
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~T-------------------------f~vD 268 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLET-------------------------FEVD 268 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCc-------------------------ceEC
Confidence 556666666542 23589999999998764 233554333321 111 0112
Q ss_pred hHHHHHHhh-----cCCCCCeEEEEeCCChhHHHHHHHHHHcCCcce
Q 026624 124 PEFVQSVKS-----QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (235)
Q Consensus 124 ~~~~~~~~~-----~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv 165 (235)
.+....+.. .+++ +.+++++.+|..+..-...+...|++-+
T Consensus 269 l~~t~~L~~~~~~~~i~~-~~~~~VsESGI~t~~Dv~~l~~~GadAv 314 (338)
T PLN02460 269 ISNTKKLLEGERGEQIRE-KGIIVVGESGLFTPDDVAYVQNAGVKAV 314 (338)
T ss_pred HHHHHHHhhhccccccCC-CCeEEEECCCCCCHHHHHHHHHCCCCEE
Confidence 222233333 3432 3478888999999999999999999744
No 119
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=31.20 E-value=1.3e+02 Score=24.55 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=35.0
Q ss_pred HHhhcCCCCCeEEEEeCCCh--hHHHHHHHHHHc---CCcceeEccccHHhhcc
Q 026624 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEEA---GFQNIACITSGLQTVKP 177 (235)
Q Consensus 129 ~~~~~~~~~~~VVvyC~~G~--rS~~aa~~L~~~---G~~nv~~L~GG~~~W~~ 177 (235)
.+...+++++.+|+.|..|. .|...|..|... |..++..+-||-.++.+
T Consensus 59 ~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~ 112 (157)
T PRK00103 59 RILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSP 112 (157)
T ss_pred HHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCH
Confidence 34556777777888888765 688888888764 54578888898655533
No 120
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.78 E-value=99 Score=23.96 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHH
Q 026624 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (235)
Q Consensus 136 ~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~ 173 (235)
++++++++.. |..+..++..|...|.++++++.--.+
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 3677888765 677788889999999998988876544
No 121
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=30.68 E-value=2.8e+02 Score=24.39 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=53.9
Q ss_pred ecHHHHHHHhhC----CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 51 VNAEEAKNLIAV----ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 51 Is~~el~~~l~~----~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
++++++.++++. +=-.||.|++..|.+...--|+.-+-++.= .+.+...+.+.
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnR-----------------------dL~t~~vd~~~ 191 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTR-----------------------DLDTFQIHQNL 191 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCC-----------------------CCccceECHHH
Confidence 556666666543 235899999999988654445544444310 01111233444
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcce
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv 165 (235)
...+...++++ +++++.+|..+..-+..+... ++.+
T Consensus 192 ~~~L~~~ip~~--~~~IsESGI~t~~d~~~l~~~-~dav 227 (247)
T PRK13957 192 VEEVAAFLPPN--IVKVGESGIESRSDLDKFRKL-VDAA 227 (247)
T ss_pred HHHHHhhCCCC--cEEEEcCCCCCHHHHHHHHHh-CCEE
Confidence 45566667643 567788999888777778775 7643
No 122
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.46 E-value=58 Score=21.94 Aligned_cols=21 Identities=52% Similarity=0.847 Sum_probs=15.2
Q ss_pred eEEEEeCCCh-hHHHHHHHHHH
Q 026624 139 KLLVVCQEGL-RSAAAANKLEE 159 (235)
Q Consensus 139 ~VVvyC~~G~-rS~~aa~~L~~ 159 (235)
+++++|++|. .|..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 4789999884 56666666665
No 123
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=30.12 E-value=71 Score=30.69 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=30.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITSG 171 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~GG 171 (235)
++++||++++ .|..|.+..++|+++|-++|++--+.
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 4799999999 57789999999999999888876544
No 124
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=29.76 E-value=1.5e+02 Score=22.50 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=23.4
Q ss_pred HhhcCCCCCeEEEEeC--CChhHHHHHHHHHHcCCcceeEccc
Q 026624 130 VKSQFSPESKLLVVCQ--EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 130 ~~~~~~~~~~VVvyC~--~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
..+.+++++.|++.++ +|.-...+...+.+ +++++++.|
T Consensus 51 ~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 51 ALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 4455666677888887 45555555544433 456777664
No 125
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.59 E-value=94 Score=28.00 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=28.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++++++++++ +|..-..+++.|++.|-++++.+.
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~ 236 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAA 236 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5688999987 788899999999999998777544
No 126
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=29.08 E-value=72 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=23.5
Q ss_pred EEEEeCCC-hhHHHHHHHHHHcCCcceeEccccHH
Q 026624 140 LLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQ 173 (235)
Q Consensus 140 VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~GG~~ 173 (235)
|+++|.++ -||..|...++...-+++.+...|+.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 57888754 47887777777653346777777764
No 127
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=28.95 E-value=82 Score=30.32 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=30.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITSG 171 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~GG 171 (235)
++++|+++++ +|..+..+++.|++.|-++|.+.-..
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~s 385 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIAS 385 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECC
Confidence 4789999998 79999999999999999888776543
No 128
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=28.45 E-value=85 Score=30.40 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
++++|+++++ +|.....++..|++.|-++|+++.-
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ 394 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASA 394 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEE
Confidence 4689999998 7999999999999999988887654
No 129
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.20 E-value=63 Score=26.10 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=30.7
Q ss_pred CCCCCeEEEEeC-CC-h--hHHHHHHHHHHcCCcceeEccccH
Q 026624 134 FSPESKLLVVCQ-EG-L--RSAAAANKLEEAGFQNIACITSGL 172 (235)
Q Consensus 134 ~~~~~~VVvyC~-~G-~--rS~~aa~~L~~~G~~nv~~L~GG~ 172 (235)
+..+..+|.+|. .| . -...+.+.|+++|-+.+.++-||.
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 456778999998 33 2 367888999999999899888885
No 130
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.16 E-value=95 Score=28.25 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
+++++|++++ +|..-..+++.|++.|-.+|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVA 250 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEE
Confidence 5788999987 8889999999999999987764
No 131
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=28.06 E-value=1.3e+02 Score=27.04 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCc-ceeEccccH
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ-NIACITSGL 172 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~-nv~~L~GG~ 172 (235)
+..+.....++.+++|+|++-..+...+..|.+.+.+ ++..+-|++
T Consensus 212 l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 212 LERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 3334444455678999999988899999999998874 688888886
No 132
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.79 E-value=70 Score=24.37 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=19.0
Q ss_pred CeEEEEeCCChhHHHHHHHHHHc
Q 026624 138 SKLLVVCQEGLRSAAAANKLEEA 160 (235)
Q Consensus 138 ~~VVvyC~~G~rS~~aa~~L~~~ 160 (235)
++|.++|+.|+.+...+..+++.
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~a 24 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKA 24 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 47999999999888888777664
No 133
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=27.73 E-value=3.4e+02 Score=24.01 Aligned_cols=89 Identities=12% Similarity=0.256 Sum_probs=57.2
Q ss_pred ecHHHHHHHhhC----CCcEEEEeCChhhHhhccCCCcEEeccccccCCCcchhhhhhhccccccccccCCCCCCCChHH
Q 026624 51 VNAEEAKNLIAV----ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (235)
Q Consensus 51 Is~~el~~~l~~----~~~~ILDvR~~~ey~~ghIpGAvnip~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 126 (235)
++.++++++++. +=-+|+.|.+.+|-+...--|+.=|-++.= ++.....+.+.
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnR-----------------------dL~tf~vdl~~ 196 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNR-----------------------DLTTLEVDLET 196 (254)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCC-----------------------CcchheecHHH
Confidence 556666666542 335899999999988765566554443210 01111223344
Q ss_pred HHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcc
Q 026624 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQN 164 (235)
Q Consensus 127 ~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~n 164 (235)
...+...++++ ++++..+|..+..-...+...|.+-
T Consensus 197 t~~la~~~p~~--~~~IsESGI~~~~dv~~l~~~ga~a 232 (254)
T COG0134 197 TEKLAPLIPKD--VILISESGISTPEDVRRLAKAGADA 232 (254)
T ss_pred HHHHHhhCCCC--cEEEecCCCCCHHHHHHHHHcCCCE
Confidence 45556666665 5666789999999999999999863
No 134
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=27.69 E-value=2.3e+02 Score=21.09 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=23.0
Q ss_pred HhhcCCCCCeEEEEeC--CChhHHHHHHHHHHcCCcceeEccc
Q 026624 130 VKSQFSPESKLLVVCQ--EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 130 ~~~~~~~~~~VVvyC~--~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
..+.+++++.|++.|+ +|.-...++..+ ..+++++++.|
T Consensus 50 ~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~--~~~~~~~vi~G 90 (116)
T PF03610_consen 50 AIEELDEGDGVLILTDLGGGSPFNEAARLL--LDKPNIRVISG 90 (116)
T ss_dssp HHHHCCTTSEEEEEESSTTSHHHHHHHHHH--CTSTTEEEEES
T ss_pred HHHhccCCCcEEEEeeCCCCccchHHHHHh--ccCCCEEEEec
Confidence 3455677888999999 444444444433 34445666654
No 135
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=27.26 E-value=96 Score=28.13 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=24.3
Q ss_pred CeEEEEe---CCChh--HHHHHHHHHHcCCcceeEccccHHhhccC--CCcc
Q 026624 138 SKLLVVC---QEGLR--SAAAANKLEEAGFQNIACITSGLQTVKPG--TFDS 182 (235)
Q Consensus 138 ~~VVvyC---~~G~r--S~~aa~~L~~~G~~nv~~L~GG~~~W~~~--g~p~ 182 (235)
++|.++. .-|.+ +....+.|++.|++ +..+.-|=.+|..+ |.++
T Consensus 113 ~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia~~Gv~i 163 (301)
T PF07755_consen 113 KRVLTVGTDCAVGKMTTALELRRALRERGIN-AGFVATGQTGIMIAGYGVPI 163 (301)
T ss_dssp EEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--G
T ss_pred CEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEecCCeec
Confidence 3444443 34554 66888999999995 66666665566443 4444
No 136
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=27.10 E-value=1.8e+02 Score=24.33 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCCCCeEEEEeC---CChhHHHHHHHHHHcCCc--cee-Ecc----ccHHhhccCCCccc
Q 026624 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ--NIA-CIT----SGLQTVKPGTFDSV 183 (235)
Q Consensus 134 ~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~--nv~-~L~----GG~~~W~~~g~p~~ 183 (235)
++++++|+++++ +|.....+.+.+++.|.+ .+. +++ ||.+...+.+.|+.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~ 173 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVE 173 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEE
Confidence 567899999998 888999999999999975 222 333 44444445555554
No 137
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=26.52 E-value=78 Score=22.39 Aligned_cols=21 Identities=38% Similarity=0.756 Sum_probs=14.5
Q ss_pred eEEEEeCCChhHH-HHHHHHHH
Q 026624 139 KLLVVCQEGLRSA-AAANKLEE 159 (235)
Q Consensus 139 ~VVvyC~~G~rS~-~aa~~L~~ 159 (235)
+|+++|.+|..+. .....+++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~ 23 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKE 23 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999988543 55555544
No 138
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=26.27 E-value=1.6e+02 Score=25.71 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=28.7
Q ss_pred hHHHHHHhhcCC---CCCeEEEEeCCChh-H----HHHHHHHHHcCCcceeEc
Q 026624 124 PEFVQSVKSQFS---PESKLLVVCQEGLR-S----AAAANKLEEAGFQNIACI 168 (235)
Q Consensus 124 ~~~~~~~~~~~~---~~~~VVvyC~~G~r-S----~~aa~~L~~~G~~nv~~L 168 (235)
+...+.+...++ +++.+|++|-+-.. | ++.--.|.+.||+||++-
T Consensus 121 e~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 121 EICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred HHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 445555666666 78889999974332 2 223345677899988764
No 139
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=25.74 E-value=1.6e+02 Score=24.22 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCCCCeEEEEeC---CChhHHHHHHHHHHcCCc
Q 026624 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (235)
Q Consensus 134 ~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~ 163 (235)
+.++++|+++++ +|.....+...|++.|.+
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe
Confidence 557889999998 899999999999999974
No 140
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=25.71 E-value=1e+02 Score=26.00 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
+++..|++++ +|..-..+++.|++.|-.+||.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 4678888887 88889999999999998888854
No 141
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.70 E-value=1e+02 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
++++++++++ +|..-..+++.|++.|-+.|+.
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 250 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYA 250 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEE
Confidence 5789999988 8999999999999999987763
No 142
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=25.38 E-value=1.2e+02 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.9
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHcCCcc
Q 026624 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQN 164 (235)
Q Consensus 135 ~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~n 164 (235)
.++++|+++++ +|.....+++.|++.|-+.
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~ 139 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEV 139 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEE
Confidence 36789999998 8889999999999999853
No 143
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=25.29 E-value=1.8e+02 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=24.0
Q ss_pred CceecHHHHHHHhhCCCcEEEEeCChhhHhh
Q 026624 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNR 78 (235)
Q Consensus 48 ~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ 78 (235)
..-..-.++...+.+.+..+||+|+..+|..
T Consensus 149 ~TGsGKT~iL~~L~~~~~~vlDlE~~aehrG 179 (345)
T PRK11784 149 NTGSGKTELLQALANAGAQVLDLEGLANHRG 179 (345)
T ss_pred CCcccHHHHHHHHHhcCCeEEECCchhhhcc
Confidence 3445566777777777888999999999975
No 144
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.25 E-value=1.8e+02 Score=22.82 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=30.6
Q ss_pred hHHHHHHhhcCCCCCeEEEEeCCC----hhHHHHHHHHHHcCCcceeEcccc
Q 026624 124 PEFVQSVKSQFSPESKLLVVCQEG----LRSAAAANKLEEAGFQNIACITSG 171 (235)
Q Consensus 124 ~~~~~~~~~~~~~~~~VVvyC~~G----~rS~~aa~~L~~~G~~nv~~L~GG 171 (235)
+++.+...+ .+-.+|.+|..- .........|++.|.+++.++-||
T Consensus 43 e~~v~aa~e---~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 43 EEIARQAVE---ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred HHHHHHHHH---cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 445444333 355689999832 245677788888898778888888
No 145
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=25.12 E-value=1.2e+02 Score=25.85 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=23.7
Q ss_pred eEEEEeCCC-hhHHHHHHHHHHcCCcceeEcc
Q 026624 139 KLLVVCQEG-LRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 139 ~VVvyC~~G-~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++-++|.+. .||..|=..|.++|| +|..+-
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~SfG 33 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSFG 33 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEeec
Confidence 577899965 499999999999999 577653
No 146
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=24.66 E-value=1.1e+02 Score=26.41 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.4
Q ss_pred CeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 138 SKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 138 ~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++|+++++ +|.....++..|++.|-++|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 67999988 89999999999999998877765
No 147
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=24.47 E-value=1.3e+02 Score=24.34 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=26.2
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHcCCcce
Q 026624 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNI 165 (235)
Q Consensus 135 ~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv 165 (235)
.++++|+++++ +|..-..+++.|++.|.+.+
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVV 145 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEE
Confidence 46789999998 78888899999999998643
No 148
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=24.19 E-value=99 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
++++|+++++ +|..+..+++.|+++|-++|++.-.
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 4789999998 7888999999999999988776544
No 149
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=24.14 E-value=1.5e+02 Score=20.75 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=12.7
Q ss_pred CCeEEEEeCCCh-hHHHH
Q 026624 137 ESKLLVVCQEGL-RSAAA 153 (235)
Q Consensus 137 ~~~VVvyC~~G~-rS~~a 153 (235)
+.+|+|+|..|. |+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 579999999665 66543
No 150
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=24.14 E-value=1.5e+02 Score=20.75 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=12.7
Q ss_pred CCeEEEEeCCCh-hHHHH
Q 026624 137 ESKLLVVCQEGL-RSAAA 153 (235)
Q Consensus 137 ~~~VVvyC~~G~-rS~~a 153 (235)
+.+|+|+|..|. |+...
T Consensus 39 ~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 39 SGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CCCEEEEeCCCCChhhHH
Confidence 579999999665 66543
No 151
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=24.05 E-value=2.2e+02 Score=23.30 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=34.2
Q ss_pred HHHhhcCCCCCeEEEEeCCC--hhHHHHHHHHHH---cCCcceeEccccHHhh
Q 026624 128 QSVKSQFSPESKLLVVCQEG--LRSAAAANKLEE---AGFQNIACITSGLQTV 175 (235)
Q Consensus 128 ~~~~~~~~~~~~VVvyC~~G--~rS~~aa~~L~~---~G~~nv~~L~GG~~~W 175 (235)
..+.+.+++++.+|+.+-.| ..|...|..|.. .| .++..+-||-.+.
T Consensus 58 ~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 58 EAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 34566778888787777655 468888888874 47 7788888986554
No 152
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=24.00 E-value=97 Score=27.21 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCCh-hHH-HHHHHHHHcCCc
Q 026624 125 EFVQSVKSQFSPESKLLVVCQEGL-RSA-AAANKLEEAGFQ 163 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~VVvyC~~G~-rS~-~aa~~L~~~G~~ 163 (235)
+++..+...+.++..|+|+|..|. |+. .++..|-+.|++
T Consensus 158 ~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 158 NWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 344433333456789999999764 544 555666667763
No 153
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=23.98 E-value=1.8e+02 Score=24.91 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=35.4
Q ss_pred cCCceecHHHHHHHhhCCCcEEEEeCChhhHhhccCCCcEEeccc
Q 026624 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLF 90 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~~~~~ILDvR~~~ey~~ghIpGAvnip~~ 90 (235)
.+++.+..+++..--...+.+.||...-...+..|.||.+-|-+.
T Consensus 50 kkVEDl~TeDFirsA~~S~~lkidsstVvrI~~S~~pg~vti~F~ 94 (224)
T KOG4053|consen 50 KKVEDLSTEDFIRSAEESDDLKIDSSTVVRIKSSGCPGSVTIIFE 94 (224)
T ss_pred eehhhcchHHHHHHHHhcCCeEeecceEEEeeccCCCceEEEEEE
Confidence 567788899887766556778888877777788999999988664
No 154
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.86 E-value=1.9e+02 Score=27.58 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccH
Q 026624 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (235)
Q Consensus 137 ~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~ 172 (235)
+..++|+|+++..+.+.+-.|+..||. ..-|.|-|
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqm 334 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQM 334 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcc-eecccchh
Confidence 478999999999999999999999994 55666655
No 155
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=23.84 E-value=1.4e+02 Score=24.51 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCccee
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~ 166 (235)
++++|+++++ +|.....+++.|++.|-+.+.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 4678999998 788889999999999976443
No 156
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=23.73 E-value=1e+02 Score=30.79 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHH
Q 026624 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~ 173 (235)
.+...+......+.+++|+|.+-.++...+..|...|++ +..+.|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 444544444456788999999999999999999999984 666666544
No 157
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=23.70 E-value=1.6e+02 Score=26.15 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=36.6
Q ss_pred hHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCccee
Q 026624 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (235)
Q Consensus 124 ~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~ 166 (235)
-+.++...+.+.++..+++||..-.......+.|++.||.++.
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 4677777778888999999999888999999999999996543
No 158
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.56 E-value=1.2e+02 Score=27.70 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++++++++ +|.....+++.|++.|-+.++.+
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 252 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVM 252 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEE
Confidence 5788999988 89999999999999998877643
No 159
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.53 E-value=1.1e+02 Score=27.91 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
++++++++++ +|..-..+++.|++.|-++|+.
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~ 251 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYA 251 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEE
Confidence 5789999988 7888999999999999988774
No 160
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=23.47 E-value=1.1e+02 Score=29.32 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++++|+++++ +|.....+++.|++.|-+.|.+.-
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 5789999998 788999999999999987776543
No 161
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=23.46 E-value=1.1e+02 Score=28.96 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
.+++||++++ .|..+......|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 4799999999 4777999999999999988875
No 162
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=23.39 E-value=1.2e+02 Score=29.51 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++|+++++ +|..+..+++.|++.|-+.|++.
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5789999998 79999999999999998766654
No 163
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=23.38 E-value=1.6e+02 Score=27.89 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=34.8
Q ss_pred HHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHc-----CCcceeEccccHHhhccC
Q 026624 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----GFQNIACITSGLQTVKPG 178 (235)
Q Consensus 126 ~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~-----G~~nv~~L~GG~~~W~~~ 178 (235)
+.+.+.+..+.+...+++|++|..|-.+|-.|.+. |-..+...+|++.+|...
T Consensus 122 lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~ 179 (442)
T TIGR03372 122 LAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLG 179 (442)
T ss_pred HHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHH
Confidence 33444443444435678899999888777777653 544577888988887643
No 164
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=23.35 E-value=1.3e+02 Score=24.32 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++|+++++ +|.....+++.|+..|-+++++.
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~ 118 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIV 118 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 4788999987 89999999999999998766543
No 165
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.08 E-value=94 Score=21.81 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=13.8
Q ss_pred eEEEEeCCChh-HHHHHHHHHH
Q 026624 139 KLLVVCQEGLR-SAAAANKLEE 159 (235)
Q Consensus 139 ~VVvyC~~G~r-S~~aa~~L~~ 159 (235)
+++++|++|.. |..+...|++
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~ 22 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEK 22 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHH
Confidence 37899998874 4445545544
No 166
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.85 E-value=4.4e+02 Score=22.95 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=26.4
Q ss_pred hHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcce
Q 026624 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (235)
Q Consensus 124 ~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv 165 (235)
.+...++...+++ .+++++.+|..+..-+..+...|++.+
T Consensus 198 ~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 198 LETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred HHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 3444445555543 346677888887777888888998744
No 167
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=22.72 E-value=1.3e+02 Score=28.62 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
++++|+++++ +|.....++..|++.|-++|.+.-.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 4789999998 7889999999999999987776554
No 168
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=22.57 E-value=2.1e+02 Score=23.74 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.8
Q ss_pred CCCCCeEEEEeC---CChhHHHHHHHHHHcCCc
Q 026624 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (235)
Q Consensus 134 ~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~ 163 (235)
+.++++|+++++ +|.....+...+++.|-+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~ 143 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGI 143 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 457899999998 788888899999999974
No 169
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=22.49 E-value=1.5e+02 Score=25.05 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
++++|+++++ +|.....+.+.|...|-+++++
T Consensus 123 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~ 157 (209)
T PRK00129 123 DERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKV 157 (209)
T ss_pred CCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEE
Confidence 3577888886 8999999999999999776653
No 170
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=22.39 E-value=1.5e+02 Score=27.09 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++++++++ +|..-..++..|++.|-++|+..
T Consensus 213 ~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~ 248 (314)
T COG0462 213 EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAA 248 (314)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEE
Confidence 4578999998 78889999999999999888744
No 171
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=22.16 E-value=1.9e+02 Score=21.01 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcc
Q 026624 137 ESKLLVVCQEGLRSAAAANKLEEAGFQN 164 (235)
Q Consensus 137 ~~~VVvyC~~G~rS~~aa~~L~~~G~~n 164 (235)
+-+|++-|.+|.-+..+...|++.|.+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~ 48 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDV 48 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcE
Confidence 3479999999999999999999999853
No 172
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.84 E-value=1.4e+02 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L 168 (235)
++++|+++++ +|.....+++.|++.|-++++..
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 238 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVA 238 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEE
Confidence 5788999988 78899999999999998766643
No 173
>PLN02541 uracil phosphoribosyltransferase
Probab=21.72 E-value=1.6e+02 Score=25.73 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=30.3
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCc--ceeEc-----cccHHhhccC
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQ--NIACI-----TSGLQTVKPG 178 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~--nv~~L-----~GG~~~W~~~ 178 (235)
++++|++++. +|..+..+.+.|.+.|.+ ++.++ .-|++...+.
T Consensus 156 ~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~Gl~~i~~~ 208 (244)
T PLN02541 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPPALKKLSEK 208 (244)
T ss_pred CCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHHHHHHHHHH
Confidence 3457888887 799999999999999986 55433 2455544444
No 174
>PTZ00110 helicase; Provisional
Probab=21.61 E-value=2e+02 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccH
Q 026624 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (235)
Q Consensus 136 ~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~ 172 (235)
++.+++|+|++-..+..++..|...|+. +..+.|++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~ 411 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDK 411 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCC
Confidence 5678999999988999999999999995 66777875
No 175
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=21.61 E-value=1e+02 Score=21.42 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=24.3
Q ss_pred cCCceecHHHHHHHhhC-CCcEEEEeCChhh
Q 026624 46 ADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQ 75 (235)
Q Consensus 46 ~~~~~Is~~el~~~l~~-~~~~ILDvR~~~e 75 (235)
..-..|+-+++++++.. .++.|+|..+.++
T Consensus 15 ~~s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 15 ETSSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred CCceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 34568999999999976 5899999987654
No 176
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=21.53 E-value=1.5e+02 Score=28.77 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcceeEcccc
Q 026624 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSG 171 (235)
Q Consensus 136 ~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG 171 (235)
.+.+|||+. .|..-..+|..|...|+.++.+++|.
T Consensus 20 ~~~kIvIIG-AG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIG-AGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEEC-CchHHHHHHHHHHHhCCceEEEEEec
Confidence 345687774 46777778889999999999999865
No 177
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=21.51 E-value=1.3e+02 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=28.8
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++++|+++++ +|.....+++.|++.|-+.|++..
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~ 375 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRI 375 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4788999998 788889999999999988777543
No 178
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=21.49 E-value=1.7e+02 Score=20.79 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCeEEEEeCCC--hhHHHHHHHHHHcCCcc
Q 026624 137 ESKLLVVCQEG--LRSAAAANKLEEAGFQN 164 (235)
Q Consensus 137 ~~~VVvyC~~G--~rS~~aa~~L~~~G~~n 164 (235)
+-+|-|+-.++ ..+..++..|+..||+.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 44567776655 46889999999999974
No 179
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=21.43 E-value=1.3e+02 Score=27.76 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=26.1
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCc
Q 026624 134 FSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (235)
Q Consensus 134 ~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~ 163 (235)
++++++|++...+|.-|..++..|.+.||+
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~G~~ 31 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEAGYE 31 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHcCCe
Confidence 345678999999999999999999999986
No 180
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=21.32 E-value=1.8e+02 Score=28.07 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=27.2
Q ss_pred cCCCCCeEEEEeC---CChhHHHHHHHHHHcCCc
Q 026624 133 QFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (235)
Q Consensus 133 ~~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~ 163 (235)
.+.++++|+|+++ +|.....+++.+++.|.+
T Consensus 389 ~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~ 422 (477)
T PRK05500 389 NFHPGETVVVVDDILITGKSVMEGAEKLKSAGLN 422 (477)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 3567899999998 899999999999999985
No 181
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=21.22 E-value=1.1e+02 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=30.3
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccH
Q 026624 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (235)
Q Consensus 137 ~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~ 172 (235)
+.+|||+.+.-..+.+.|..|.++|| +++.|-||-
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 56788888877788999999999999 499999984
No 182
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=20.90 E-value=1.4e+02 Score=28.70 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++++|+++++ +|.....++..|++.|-+.|++..
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~ 388 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRV 388 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 5688999998 688889999999999988777554
No 183
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=20.84 E-value=1.6e+02 Score=24.74 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.3
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeE
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~ 167 (235)
+++.|+++++ +|.....+.+.|.+.|-+++.+
T Consensus 121 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v 155 (207)
T TIGR01091 121 DERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKV 155 (207)
T ss_pred CCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEE
Confidence 3567888876 8999999999999999877653
No 184
>PLN02293 adenine phosphoribosyltransferase
Probab=20.80 E-value=1.8e+02 Score=24.22 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCCCCeEEEEeC---CChhHHHHHHHHHHcCCcc
Q 026624 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQN 164 (235)
Q Consensus 134 ~~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~n 164 (235)
+.++++|+++++ +|.....+.+.+++.|-+.
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~ 155 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAEV 155 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCEE
Confidence 557889999998 7889999999999999853
No 185
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=20.79 E-value=1.3e+02 Score=29.00 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
++++|+++++ +|..+..++..|++.|-++|.+.-.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~ 392 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIG 392 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 4678999998 6888999999999999877765443
No 186
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=20.52 E-value=1.3e+02 Score=30.12 Aligned_cols=49 Identities=12% Similarity=0.318 Sum_probs=37.1
Q ss_pred hHHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHcCCcceeEccccHH
Q 026624 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (235)
Q Consensus 124 ~~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~G~~nv~~L~GG~~ 173 (235)
+.+...+.....++.+++|+|.+-.++...+..|...|++ +..+.|++.
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 3455555555566788999999989999999999999984 666666543
No 187
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=20.42 E-value=1.6e+02 Score=26.55 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=28.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEcc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~ 169 (235)
++++++++++ +|.....+++.|++.|-++++++.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 4678999987 788889999999999998776554
No 188
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=20.42 E-value=1.7e+02 Score=25.96 Aligned_cols=28 Identities=39% Similarity=0.591 Sum_probs=21.2
Q ss_pred CCCCeEEEEeCCCh-hHH--HHHHHHHHcCC
Q 026624 135 SPESKLLVVCQEGL-RSA--AAANKLEEAGF 162 (235)
Q Consensus 135 ~~~~~VVvyC~~G~-rS~--~aa~~L~~~G~ 162 (235)
.++..|+|+|..|. ||+ .+|+.+...|.
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~ 183 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGL 183 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCC
Confidence 45789999999775 655 67777777776
No 189
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=20.37 E-value=2e+02 Score=26.83 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCChhHHHHHHHHHHc--CCcceeEccccHHhhccCC
Q 026624 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKPGT 179 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~VVvyC~~G~rS~~aa~~L~~~--G~~nv~~L~GG~~~W~~~g 179 (235)
++.+++.+..++...-|++|++|..|-.+|-.|.+. |-+++..++|++.+|....
T Consensus 90 ~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ 146 (433)
T PRK08117 90 KLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGA 146 (433)
T ss_pred HHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHH
Confidence 444444444444445678899998888777777553 5456888899998886543
No 190
>PLN02440 amidophosphoribosyltransferase
Probab=20.36 E-value=1.3e+02 Score=28.94 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCCeEEEEeC---CChhHHHHHHHHHHcCCcceeEccc
Q 026624 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACITS 170 (235)
Q Consensus 136 ~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv~~L~G 170 (235)
++++|+++++ +|.....+++.|++.|-+.|++...
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~ 376 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIA 376 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 4688999998 7889999999999999987775544
No 191
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=20.20 E-value=1.8e+02 Score=24.11 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.5
Q ss_pred CCCCeEEEEeC---CChhHHHHHHHHHHcCCcce
Q 026624 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNI 165 (235)
Q Consensus 135 ~~~~~VVvyC~---~G~rS~~aa~~L~~~G~~nv 165 (235)
.++++|+++++ +|.....++..|+..|.+.+
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv 136 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEE
Confidence 46889999998 78889999999999998643
No 192
>PRK03094 hypothetical protein; Provisional
Probab=20.07 E-value=3.5e+02 Score=19.61 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHH
Q 026624 137 ESKLLVVCQEGLRSAAAANKLEE 159 (235)
Q Consensus 137 ~~~VVvyC~~G~rS~~aa~~L~~ 159 (235)
...+.+++++|..+......++.
T Consensus 55 ~t~~pVI~A~G~TaeEI~~~ve~ 77 (80)
T PRK03094 55 STKGSVITASGLTADEICQQVES 77 (80)
T ss_pred ccCCcEEEcCCCCHHHHHHHHHH
Confidence 34567889999999999888864
Done!