Query 026625
Match_columns 235
No_of_seqs 163 out of 1209
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2.8E-56 6E-61 381.2 24.0 217 9-226 1-220 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.3E-53 2.9E-58 359.4 21.8 223 7-232 10-238 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 1.7E-50 3.6E-55 347.2 23.4 210 11-225 1-219 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 3.9E-50 8.5E-55 348.5 24.1 215 6-224 10-235 (346)
5 PRK10625 tas putative aldo-ket 100.0 7.9E-50 1.7E-54 346.9 24.3 217 9-229 1-251 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 2.8E-50 6E-55 333.3 18.2 188 9-218 3-196 (280)
7 cd06660 Aldo_ket_red Aldo-keto 100.0 2.5E-48 5.3E-53 329.0 23.7 208 11-225 1-212 (285)
8 PLN02587 L-galactose dehydroge 100.0 1.2E-48 2.6E-53 335.4 21.7 206 11-223 1-216 (314)
9 KOG1577 Aldo/keto reductase fa 100.0 9E-47 1.9E-51 312.7 17.4 186 11-219 6-215 (300)
10 PRK10376 putative oxidoreducta 100.0 8.5E-46 1.8E-50 314.3 22.9 203 11-217 9-218 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.5E-46 1.4E-50 313.9 20.0 196 23-225 1-201 (283)
12 PRK14863 bifunctional regulato 100.0 3.4E-45 7.4E-50 310.5 18.1 191 18-222 2-202 (292)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 9.2E-45 2E-49 304.6 20.3 180 20-221 2-188 (267)
14 COG4989 Predicted oxidoreducta 100.0 1.5E-44 3.3E-49 288.5 14.4 210 9-221 1-218 (298)
15 KOG1576 Predicted oxidoreducta 100.0 9.6E-44 2.1E-48 286.1 14.8 227 4-233 17-251 (342)
16 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.8E-42 6E-47 290.6 19.9 183 11-218 6-193 (275)
17 COG1453 Predicted oxidoreducta 100.0 1.2E-42 2.5E-47 291.6 17.1 205 9-222 1-213 (391)
18 KOG3023 Glutamate-cysteine lig 98.3 2.7E-06 5.9E-11 68.7 6.6 71 141-212 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 95.8 0.37 8.1E-06 41.4 13.4 154 40-217 134-291 (316)
20 cd03316 MR_like Mandelate race 93.6 4.4 9.4E-05 35.3 14.8 154 40-213 139-299 (357)
21 PF07021 MetW: Methionine bios 93.2 2.5 5.4E-05 33.7 11.2 150 46-218 5-172 (193)
22 cd03315 MLE_like Muconate lact 92.6 5.4 0.00012 33.2 14.8 157 40-217 85-243 (265)
23 TIGR02370 pyl_corrinoid methyl 90.3 5.6 0.00012 31.7 10.6 145 40-206 10-164 (197)
24 PRK13958 N-(5'-phosphoribosyl) 90.2 1.2 2.7E-05 35.9 6.7 67 118-186 16-83 (207)
25 cd03174 DRE_TIM_metallolyase D 89.8 3 6.4E-05 34.5 9.0 105 106-212 16-135 (265)
26 PRK08609 hypothetical protein; 89.3 14 0.00031 34.6 13.8 150 44-210 351-523 (570)
27 COG0135 TrpF Phosphoribosylant 89.0 3.6 7.7E-05 33.3 8.4 82 119-209 18-102 (208)
28 COG1140 NarY Nitrate reductase 88.5 0.21 4.6E-06 43.5 1.2 54 154-207 263-317 (513)
29 cd02070 corrinoid_protein_B12- 87.2 14 0.0003 29.5 11.8 145 40-206 9-162 (201)
30 PRK01222 N-(5'-phosphoribosyl) 86.7 2.5 5.5E-05 34.1 6.4 66 119-186 19-85 (210)
31 cd00308 enolase_like Enolase-s 85.4 6.6 0.00014 31.9 8.4 87 127-217 120-208 (229)
32 PRK10550 tRNA-dihydrouridine s 84.8 25 0.00053 30.3 14.0 133 40-185 73-224 (312)
33 PF00682 HMGL-like: HMGL-like 84.3 13 0.00029 30.2 9.7 120 39-174 11-143 (237)
34 PRK08392 hypothetical protein; 84.0 21 0.00045 28.8 12.4 149 44-210 16-179 (215)
35 COG1748 LYS9 Saccharopine dehy 83.5 8.2 0.00018 34.3 8.5 82 41-138 78-159 (389)
36 PF03102 NeuB: NeuB family; I 83.3 10 0.00023 31.3 8.6 110 39-168 53-183 (241)
37 TIGR01928 menC_lowGC/arch o-su 83.3 29 0.00062 29.9 14.4 152 40-217 132-286 (324)
38 cd03323 D-glucarate_dehydratas 83.3 33 0.00071 30.6 15.5 150 40-214 168-321 (395)
39 cd03318 MLE Muconate Lactonizi 82.6 33 0.00071 30.0 13.3 148 42-212 144-297 (365)
40 PLN02363 phosphoribosylanthran 82.5 5.8 0.00013 33.2 6.9 66 120-186 64-130 (256)
41 TIGR01278 DPOR_BchB light-inde 82.3 23 0.0005 32.7 11.4 134 65-215 67-243 (511)
42 cd03322 rpsA The starvation se 81.5 36 0.00078 29.8 14.8 145 40-212 126-272 (361)
43 cd03325 D-galactonate_dehydrat 81.2 36 0.00079 29.6 14.9 153 40-212 123-285 (352)
44 cd04740 DHOD_1B_like Dihydroor 80.9 33 0.00072 29.0 13.8 151 40-206 100-286 (296)
45 PRK13803 bifunctional phosphor 78.9 16 0.00034 34.6 9.2 88 120-209 20-108 (610)
46 COG2089 SpsE Sialic acid synth 78.7 43 0.00094 29.0 11.4 117 39-174 87-223 (347)
47 cd03321 mandelate_racemase Man 78.3 46 0.00099 29.0 12.9 152 41-212 142-295 (355)
48 PRK05692 hydroxymethylglutaryl 78.1 12 0.00026 31.8 7.5 102 106-210 23-138 (287)
49 PF13378 MR_MLE_C: Enolase C-t 77.7 3.8 8.2E-05 29.2 3.8 51 163-213 3-54 (111)
50 PRK06294 coproporphyrinogen II 77.5 20 0.00043 31.6 9.0 60 106-167 167-243 (370)
51 PRK07379 coproporphyrinogen II 77.3 18 0.00038 32.3 8.7 59 107-167 180-255 (400)
52 PRK07945 hypothetical protein; 77.2 49 0.0011 28.8 16.3 152 42-210 111-289 (335)
53 TIGR01502 B_methylAsp_ase meth 77.2 17 0.00037 32.6 8.5 86 128-214 265-357 (408)
54 TIGR00676 fadh2 5,10-methylene 76.7 44 0.00095 28.0 13.0 147 42-208 15-186 (272)
55 COG1801 Uncharacterized conser 76.2 45 0.00099 28.0 10.8 109 23-138 4-115 (263)
56 CHL00076 chlB photochlorophyll 75.9 55 0.0012 30.3 11.7 89 127-215 117-248 (513)
57 PRK00164 moaA molybdenum cofac 75.9 51 0.0011 28.3 14.4 152 39-210 49-228 (331)
58 TIGR02026 BchE magnesium-proto 75.7 39 0.00085 31.1 10.7 66 139-206 320-392 (497)
59 cd01974 Nitrogenase_MoFe_beta 75.4 37 0.00081 30.6 10.4 111 60-183 62-192 (435)
60 COG0635 HemN Coproporphyrinoge 74.9 30 0.00064 31.1 9.5 60 106-167 201-276 (416)
61 TIGR00735 hisF imidazoleglycer 74.9 45 0.00098 27.6 10.1 89 117-208 162-253 (254)
62 cd07943 DRE_TIM_HOA 4-hydroxy- 74.6 32 0.00069 28.6 9.2 104 106-211 19-131 (263)
63 PRK09427 bifunctional indole-3 74.6 11 0.00024 34.3 6.7 65 119-187 273-338 (454)
64 PRK13796 GTPase YqeH; Provisio 74.0 62 0.0013 28.5 12.7 120 39-170 54-176 (365)
65 COG4464 CapC Capsular polysacc 73.3 24 0.00053 28.7 7.5 43 38-80 16-61 (254)
66 PRK05660 HemN family oxidoredu 73.3 29 0.00063 30.6 9.0 27 106-133 171-197 (378)
67 TIGR02534 mucon_cyclo muconate 73.1 64 0.0014 28.2 14.4 84 127-214 213-298 (368)
68 cd03314 MAL Methylaspartate am 71.7 48 0.001 29.3 9.9 85 129-213 229-320 (369)
69 PRK09058 coproporphyrinogen II 71.2 38 0.00082 30.7 9.4 60 106-167 227-304 (449)
70 PRK15072 bifunctional D-altron 71.1 34 0.00073 30.5 8.9 83 127-213 232-316 (404)
71 PLN02428 lipoic acid synthase 71.1 70 0.0015 28.1 10.6 158 39-216 130-325 (349)
72 PRK02910 light-independent pro 71.1 68 0.0015 29.7 11.1 131 70-215 69-243 (519)
73 cd07944 DRE_TIM_HOA_like 4-hyd 70.5 38 0.00082 28.4 8.7 104 105-211 16-128 (266)
74 cd03329 MR_like_4 Mandelate ra 70.4 75 0.0016 27.9 14.5 152 40-212 143-299 (368)
75 KOG0259 Tyrosine aminotransfer 70.4 80 0.0017 28.2 15.4 152 40-222 79-249 (447)
76 cd02069 methionine_synthase_B1 70.0 57 0.0012 26.4 10.9 144 40-206 13-168 (213)
77 cd03327 MR_like_2 Mandelate ra 69.9 74 0.0016 27.6 14.7 153 40-212 120-280 (341)
78 PRK00730 rnpA ribonuclease P; 69.8 32 0.0007 25.9 7.2 63 82-154 46-110 (138)
79 PF05690 ThiG: Thiazole biosyn 69.6 41 0.00089 27.8 8.2 167 21-210 8-180 (247)
80 PRK08446 coproporphyrinogen II 69.5 76 0.0017 27.6 11.0 60 106-167 162-231 (350)
81 TIGR00126 deoC deoxyribose-pho 69.4 39 0.00085 27.4 8.2 73 39-126 129-205 (211)
82 PLN02746 hydroxymethylglutaryl 69.2 43 0.00093 29.4 8.9 101 106-209 65-179 (347)
83 cd01973 Nitrogenase_VFe_beta_l 68.7 83 0.0018 28.6 11.0 112 60-184 63-194 (454)
84 TIGR00677 fadh2_euk methylenet 68.6 72 0.0016 27.0 13.2 152 41-208 15-190 (281)
85 PRK00208 thiG thiazole synthas 68.5 68 0.0015 26.7 14.1 103 106-210 73-180 (250)
86 PRK07259 dihydroorotate dehydr 68.1 74 0.0016 26.9 12.3 153 40-206 102-289 (301)
87 TIGR00126 deoC deoxyribose-pho 67.9 64 0.0014 26.1 10.2 135 38-188 14-157 (211)
88 PRK13347 coproporphyrinogen II 67.7 30 0.00064 31.4 8.0 60 106-167 216-291 (453)
89 cd01965 Nitrogenase_MoFe_beta_ 67.6 73 0.0016 28.6 10.4 105 63-184 61-188 (428)
90 COG1168 MalY Bifunctional PLP- 67.4 91 0.002 27.7 12.2 143 41-215 40-201 (388)
91 cd07943 DRE_TIM_HOA 4-hydroxy- 67.3 72 0.0016 26.5 16.4 25 38-62 18-42 (263)
92 cd00739 DHPS DHPS subgroup of 66.4 55 0.0012 27.3 8.8 100 107-212 22-127 (257)
93 PLN00191 enolase 66.3 72 0.0016 29.1 10.0 97 106-211 295-394 (457)
94 cd00423 Pterin_binding Pterin 64.9 72 0.0016 26.5 9.2 102 106-213 21-128 (258)
95 cd03174 DRE_TIM_metallolyase D 64.4 79 0.0017 25.9 14.1 27 39-65 16-42 (265)
96 PF00697 PRAI: N-(5'phosphorib 64.4 10 0.00022 30.2 3.9 66 118-187 14-80 (197)
97 PRK05628 coproporphyrinogen II 64.2 62 0.0013 28.4 9.1 60 106-167 172-248 (375)
98 PRK00077 eno enolase; Provisio 64.1 86 0.0019 28.2 10.1 96 106-210 261-361 (425)
99 KOG0023 Alcohol dehydrogenase, 64.0 23 0.00051 30.7 6.0 149 7-207 172-323 (360)
100 PRK05799 coproporphyrinogen II 63.8 55 0.0012 28.7 8.7 26 107-133 164-189 (374)
101 cd02930 DCR_FMN 2,4-dienoyl-Co 63.1 1E+02 0.0022 26.8 13.3 98 83-185 202-306 (353)
102 PLN02540 methylenetetrahydrofo 63.0 1.4E+02 0.003 28.2 14.1 150 41-206 14-196 (565)
103 cd06543 GH18_PF-ChiA-like PF-C 62.7 98 0.0021 26.4 14.1 183 23-218 71-266 (294)
104 PRK08599 coproporphyrinogen II 62.5 51 0.0011 28.9 8.3 59 106-166 164-239 (377)
105 PRK14461 ribosomal RNA large s 62.1 66 0.0014 28.5 8.7 87 130-216 232-352 (371)
106 TIGR01862 N2-ase-Ialpha nitrog 61.9 89 0.0019 28.3 9.9 105 62-182 96-221 (443)
107 PF14871 GHL6: Hypothetical gl 61.4 17 0.00038 27.0 4.4 25 192-216 44-68 (132)
108 PRK08208 coproporphyrinogen II 61.4 66 0.0014 29.0 8.9 60 106-167 205-275 (430)
109 TIGR03822 AblA_like_2 lysine-2 60.3 1.1E+02 0.0024 26.3 12.8 121 39-175 119-252 (321)
110 PRK14017 galactonate dehydrata 59.8 1.2E+02 0.0027 26.7 15.2 154 40-213 124-287 (382)
111 PTZ00081 enolase; Provisional 59.5 1.1E+02 0.0024 27.7 9.9 96 106-210 281-381 (439)
112 cd04731 HisF The cyclase subun 59.3 97 0.0021 25.2 11.5 85 117-204 156-243 (243)
113 PF04476 DUF556: Protein of un 58.6 1E+02 0.0022 25.4 11.0 150 40-208 9-183 (235)
114 TIGR01060 eno phosphopyruvate 58.4 1.3E+02 0.0029 27.0 10.3 95 107-210 263-362 (425)
115 COG3172 NadR Predicted ATPase/ 57.9 52 0.0011 25.7 6.4 99 53-155 78-185 (187)
116 cd03317 NAAAR N-acylamino acid 57.9 1.3E+02 0.0027 26.2 14.6 147 42-214 139-288 (354)
117 PRK05283 deoxyribose-phosphate 57.8 52 0.0011 27.6 7.0 78 40-128 144-227 (257)
118 PRK06582 coproporphyrinogen II 57.6 73 0.0016 28.3 8.4 60 106-167 174-250 (390)
119 TIGR01430 aden_deam adenosine 57.4 1.2E+02 0.0027 25.8 13.8 99 107-209 138-237 (324)
120 PF00682 HMGL-like: HMGL-like 57.1 69 0.0015 25.9 7.7 97 106-208 11-124 (237)
121 TIGR03822 AblA_like_2 lysine-2 56.7 1.3E+02 0.0028 25.9 12.1 89 130-218 140-240 (321)
122 cd00405 PRAI Phosphoribosylant 56.4 99 0.0021 24.5 8.6 41 126-170 73-113 (203)
123 COG0820 Predicted Fe-S-cluster 56.0 55 0.0012 28.7 7.1 87 130-217 216-331 (349)
124 COG2355 Zn-dependent dipeptida 55.9 1E+02 0.0022 26.6 8.6 107 42-164 149-260 (313)
125 cd02801 DUS_like_FMN Dihydrour 55.9 1E+02 0.0023 24.6 9.9 136 40-188 65-216 (231)
126 TIGR00190 thiC thiamine biosyn 55.8 70 0.0015 28.6 7.7 107 40-166 75-184 (423)
127 PRK08195 4-hyroxy-2-oxovalerat 55.3 1.4E+02 0.0031 26.0 9.6 105 105-211 21-134 (337)
128 PRK08776 cystathionine gamma-s 54.9 1.6E+02 0.0034 26.3 11.2 87 128-218 100-188 (405)
129 TIGR01927 menC_gamma/gm+ o-suc 54.3 1.2E+02 0.0026 25.9 9.0 86 127-218 183-270 (307)
130 cd07948 DRE_TIM_HCS Saccharomy 54.3 1.1E+02 0.0024 25.5 8.6 98 106-211 19-131 (262)
131 PRK09061 D-glutamate deacylase 53.7 1.8E+02 0.004 26.8 11.6 113 43-166 170-286 (509)
132 TIGR03471 HpnJ hopanoid biosyn 53.6 1.5E+02 0.0032 27.0 9.9 68 139-208 320-394 (472)
133 PRK00507 deoxyribose-phosphate 53.6 62 0.0013 26.4 6.7 75 39-125 133-208 (221)
134 cd07948 DRE_TIM_HCS Saccharomy 52.9 1.4E+02 0.0029 25.0 12.9 25 39-63 19-43 (262)
135 COG0145 HyuA N-methylhydantoin 52.9 1.8E+02 0.0039 28.0 10.6 99 38-138 135-244 (674)
136 PRK09249 coproporphyrinogen II 52.7 71 0.0015 29.0 7.7 26 106-132 215-240 (453)
137 cd03313 enolase Enolase: Enola 51.7 1.8E+02 0.0039 26.1 10.7 96 106-210 261-361 (408)
138 PRK07094 biotin synthase; Prov 51.2 1.3E+02 0.0027 25.7 8.7 116 39-175 70-202 (323)
139 COG0135 TrpF Phosphoribosylant 50.8 61 0.0013 26.2 6.2 100 40-166 11-111 (208)
140 PRK12928 lipoyl synthase; Prov 50.7 1.6E+02 0.0034 25.1 10.2 160 39-214 87-280 (290)
141 TIGR02931 anfK_nitrog Fe-only 50.6 2E+02 0.0043 26.2 10.3 112 60-184 69-201 (461)
142 TIGR00048 radical SAM enzyme, 50.3 51 0.0011 28.9 6.1 87 130-216 219-333 (355)
143 PRK13352 thiamine biosynthesis 50.3 98 0.0021 27.8 7.7 111 40-170 75-191 (431)
144 cd02803 OYE_like_FMN_family Ol 49.9 1.6E+02 0.0035 25.1 13.3 95 83-185 206-311 (327)
145 cd02810 DHOD_DHPD_FMN Dihydroo 49.8 1.5E+02 0.0033 24.7 12.3 131 40-185 109-272 (289)
146 PRK06015 keto-hydroxyglutarate 49.7 67 0.0015 25.8 6.2 87 107-210 14-102 (201)
147 TIGR00737 nifR3_yhdG putative 49.7 1.7E+02 0.0036 25.1 12.7 134 40-186 73-223 (319)
148 TIGR02660 nifV_homocitr homoci 49.5 1.8E+02 0.004 25.5 10.2 98 104-209 18-130 (365)
149 TIGR02090 LEU1_arch isopropylm 49.5 1.8E+02 0.004 25.5 10.4 26 39-64 19-44 (363)
150 PTZ00413 lipoate synthase; Pro 49.5 1.9E+02 0.0042 25.8 11.3 159 38-216 176-373 (398)
151 TIGR00538 hemN oxygen-independ 49.4 1.2E+02 0.0025 27.6 8.5 60 106-167 215-290 (455)
152 PF09989 DUF2229: CoA enzyme a 49.2 76 0.0016 25.8 6.6 33 179-211 186-218 (221)
153 cd03324 rTSbeta_L-fuconate_deh 49.2 2E+02 0.0043 25.8 14.5 152 40-212 196-352 (415)
154 PRK14463 ribosomal RNA large s 49.1 1.8E+02 0.004 25.4 10.8 94 130-223 211-338 (349)
155 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.8 1.6E+02 0.0035 24.7 16.7 25 39-63 18-42 (275)
156 TIGR03820 lys_2_3_AblA lysine- 48.6 2.1E+02 0.0045 25.9 10.5 108 107-218 139-258 (417)
157 PRK14462 ribosomal RNA large s 48.3 1.9E+02 0.0042 25.4 10.1 87 131-217 225-339 (356)
158 TIGR03247 glucar-dehydr glucar 48.1 2.1E+02 0.0046 25.9 14.3 85 129-213 252-337 (441)
159 cd08583 PI-PLCc_GDPD_SF_unchar 48.1 1.5E+02 0.0032 24.0 9.0 22 41-62 14-35 (237)
160 PRK05414 urocanate hydratase; 48.1 56 0.0012 30.1 6.0 127 46-186 116-267 (556)
161 COG2069 CdhD CO dehydrogenase/ 47.8 1.8E+02 0.004 25.0 10.0 95 116-215 157-261 (403)
162 COG0218 Predicted GTPase [Gene 47.8 1.5E+02 0.0032 23.9 9.9 101 41-154 90-198 (200)
163 COG2159 Predicted metal-depend 47.1 1.2E+02 0.0026 25.8 7.8 94 119-214 55-166 (293)
164 cd03326 MR_like_1 Mandelate ra 46.9 2.1E+02 0.0045 25.4 13.6 146 40-207 160-313 (385)
165 TIGR01182 eda Entner-Doudoroff 46.6 80 0.0017 25.4 6.3 87 107-210 18-106 (204)
166 PRK14465 ribosomal RNA large s 46.5 1.9E+02 0.0041 25.3 9.0 88 130-217 216-330 (342)
167 PRK08195 4-hyroxy-2-oxovalerat 46.5 2E+02 0.0043 25.0 17.5 24 39-62 22-45 (337)
168 PF05368 NmrA: NmrA-like famil 46.4 85 0.0018 25.1 6.6 86 125-218 21-107 (233)
169 PF00148 Oxidored_nitro: Nitro 46.3 2.1E+02 0.0045 25.2 10.7 132 70-214 58-226 (398)
170 TIGR01228 hutU urocanate hydra 45.9 61 0.0013 29.8 5.9 127 46-186 107-258 (545)
171 COG4943 Predicted signal trans 45.9 1.1E+02 0.0024 28.1 7.5 139 71-225 341-506 (524)
172 TIGR00035 asp_race aspartate r 45.7 1.3E+02 0.0029 24.3 7.6 63 106-169 14-88 (229)
173 cd02932 OYE_YqiM_FMN Old yello 45.6 2E+02 0.0043 24.8 13.0 101 77-185 213-320 (336)
174 PRK14459 ribosomal RNA large s 45.5 1.7E+02 0.0037 26.0 8.6 89 129-217 241-360 (373)
175 PF01207 Dus: Dihydrouridine s 45.5 1.1E+02 0.0023 26.3 7.3 133 40-184 64-212 (309)
176 PRK12331 oxaloacetate decarbox 45.3 1.5E+02 0.0033 27.0 8.5 103 106-210 23-141 (448)
177 TIGR03597 GTPase_YqeH ribosome 45.1 2.1E+02 0.0046 25.0 9.5 120 39-170 48-170 (360)
178 PF01053 Cys_Met_Meta_PP: Cys/ 45.1 99 0.0021 27.5 7.2 82 141-222 104-188 (386)
179 PRK12558 glutamyl-tRNA synthet 45.0 82 0.0018 28.7 6.7 60 106-173 48-107 (445)
180 cd06570 GH20_chitobiase-like_1 44.8 28 0.0006 30.0 3.6 34 38-73 64-97 (311)
181 COG1121 ZnuC ABC-type Mn/Zn tr 44.8 1.6E+02 0.0034 24.7 7.8 61 112-174 117-206 (254)
182 cd01297 D-aminoacylase D-amino 44.7 2.3E+02 0.0049 25.2 11.9 123 42-176 167-298 (415)
183 PRK15440 L-rhamnonate dehydrat 44.5 65 0.0014 28.7 5.9 68 144-211 247-318 (394)
184 KOG2264 Exostosin EXT1L [Signa 44.4 60 0.0013 30.4 5.7 54 68-137 632-687 (907)
185 PF07302 AroM: AroM protein; 44.4 1.8E+02 0.0038 23.8 13.3 162 40-214 11-187 (221)
186 PRK02901 O-succinylbenzoate sy 44.2 2.1E+02 0.0046 24.8 9.7 71 145-217 173-244 (327)
187 cd04734 OYE_like_3_FMN Old yel 44.0 2.2E+02 0.0047 24.8 14.7 139 39-185 131-315 (343)
188 PRK13361 molybdenum cofactor b 43.9 2.1E+02 0.0046 24.6 13.6 129 39-188 45-193 (329)
189 TIGR00742 yjbN tRNA dihydrouri 43.8 2.1E+02 0.0046 24.6 11.0 133 40-184 65-222 (318)
190 TIGR01861 ANFD nitrogenase iro 43.6 2.7E+02 0.0059 25.8 10.9 138 62-214 106-282 (513)
191 TIGR03217 4OH_2_O_val_ald 4-hy 43.6 2.2E+02 0.0048 24.7 17.6 47 39-85 21-78 (333)
192 TIGR01163 rpe ribulose-phospha 43.6 1.6E+02 0.0034 23.1 9.6 97 107-207 9-106 (210)
193 PRK04452 acetyl-CoA decarbonyl 43.3 2.2E+02 0.0048 24.7 9.9 93 117-214 83-184 (319)
194 TIGR03217 4OH_2_O_val_ald 4-hy 43.2 2.2E+02 0.0048 24.7 9.5 100 105-210 20-132 (333)
195 cd04728 ThiG Thiazole synthase 42.6 2E+02 0.0043 24.0 15.4 103 106-210 73-180 (248)
196 COG0626 MetC Cystathionine bet 42.4 1.7E+02 0.0036 26.3 8.1 82 141-222 112-196 (396)
197 PF01118 Semialdhyde_dh: Semia 42.3 39 0.00084 24.3 3.6 27 40-66 75-101 (121)
198 PRK10415 tRNA-dihydrouridine s 42.1 2.3E+02 0.0049 24.4 12.1 134 40-185 75-224 (321)
199 cd00959 DeoC 2-deoxyribose-5-p 42.1 1.7E+02 0.0037 23.2 7.6 70 40-124 129-202 (203)
200 TIGR03821 AblA_like_1 lysine-2 41.8 2.3E+02 0.005 24.4 10.0 91 128-218 144-246 (321)
201 cd01967 Nitrogenase_MoFe_alpha 41.7 2.5E+02 0.0054 24.8 9.4 104 63-182 67-190 (406)
202 cd00248 Mth938-like Mth938-lik 41.7 92 0.002 22.2 5.4 52 162-213 36-87 (109)
203 TIGR02455 TreS_stutzeri trehal 41.6 54 0.0012 31.3 5.1 140 53-208 112-290 (688)
204 PF01904 DUF72: Protein of unk 41.6 1.9E+02 0.0042 23.5 10.6 94 56-154 19-113 (230)
205 cd00405 PRAI Phosphoribosylant 41.5 99 0.0022 24.4 6.2 65 120-187 16-82 (203)
206 PF04481 DUF561: Protein of un 41.4 1.5E+02 0.0033 24.3 6.9 26 39-64 24-49 (242)
207 cd07938 DRE_TIM_HMGL 3-hydroxy 41.3 1.7E+02 0.0036 24.6 7.7 98 106-209 17-131 (274)
208 PRK08255 salicylyl-CoA 5-hydro 41.1 3.5E+02 0.0077 26.4 13.8 158 39-207 541-737 (765)
209 cd03320 OSBS o-Succinylbenzoat 41.0 2.1E+02 0.0045 23.7 12.4 86 127-217 153-239 (263)
210 PF13407 Peripla_BP_4: Peripla 40.9 1.3E+02 0.0029 24.1 7.0 52 109-166 14-65 (257)
211 smart00642 Aamy Alpha-amylase 40.7 42 0.00092 25.9 3.8 19 195-213 73-91 (166)
212 TIGR02932 vnfK_nitrog V-contai 40.7 2.8E+02 0.0062 25.2 11.5 112 60-184 66-198 (457)
213 PF01081 Aldolase: KDPG and KH 40.4 99 0.0021 24.7 5.9 78 117-210 27-106 (196)
214 PRK09536 btuD corrinoid ABC tr 39.8 94 0.002 27.8 6.2 75 143-217 278-352 (402)
215 KOG2499 Beta-N-acetylhexosamin 39.1 27 0.00059 31.9 2.7 62 1-66 207-277 (542)
216 PRK00915 2-isopropylmalate syn 38.9 3.2E+02 0.007 25.3 10.1 25 39-63 23-47 (513)
217 cd02067 B12-binding B12 bindin 38.6 1.4E+02 0.0031 21.1 7.7 24 164-187 36-59 (119)
218 COG1751 Uncharacterized conser 38.4 1.3E+02 0.0028 23.2 5.8 76 36-125 8-85 (186)
219 KOG1549 Cysteine desulfurase N 38.2 2.8E+02 0.0061 25.1 8.8 83 128-215 133-221 (428)
220 PRK05283 deoxyribose-phosphate 38.2 2.4E+02 0.0052 23.6 9.2 134 38-185 22-167 (257)
221 KOG0059 Lipid exporter ABCA1 a 38.0 2.2E+02 0.0048 28.4 9.0 70 105-176 669-767 (885)
222 PRK05968 hypothetical protein; 38.0 2E+02 0.0043 25.4 8.0 54 165-218 136-190 (389)
223 TIGR02080 O_succ_thio_ly O-suc 38.0 2.8E+02 0.0061 24.4 11.1 87 128-218 91-179 (382)
224 COG4626 Phage terminase-like p 38.0 1.7E+02 0.0038 27.3 7.7 73 140-215 411-486 (546)
225 smart00148 PLCXc Phospholipase 37.7 1.5E+02 0.0032 22.0 6.2 49 45-93 31-97 (135)
226 PRK08247 cystathionine gamma-s 37.6 1.9E+02 0.0042 25.1 7.9 63 157-219 116-180 (366)
227 TIGR01496 DHPS dihydropteroate 37.6 2.4E+02 0.0052 23.5 10.7 99 106-212 20-125 (257)
228 TIGR01329 cysta_beta_ly_E cyst 37.6 2.2E+02 0.0048 25.0 8.3 87 128-218 86-174 (378)
229 PRK09358 adenosine deaminase; 37.1 2.7E+02 0.0059 23.9 13.8 99 108-209 148-247 (340)
230 COG2896 MoaA Molybdenum cofact 36.9 2E+02 0.0044 24.9 7.6 117 39-176 43-175 (322)
231 PF01175 Urocanase: Urocanase; 36.8 1E+02 0.0022 28.5 5.9 126 46-186 106-257 (546)
232 PLN02951 Molybderin biosynthes 36.6 3E+02 0.0065 24.3 9.1 146 39-204 90-262 (373)
233 cd07944 DRE_TIM_HOA_like 4-hyd 36.4 2.5E+02 0.0055 23.4 16.5 26 39-64 17-42 (266)
234 TIGR01290 nifB nitrogenase cof 36.4 3.3E+02 0.0072 24.7 10.5 110 105-217 59-199 (442)
235 COG3623 SgaU Putative L-xylulo 36.3 73 0.0016 26.4 4.5 77 16-93 65-156 (287)
236 cd04742 NPD_FabD 2-Nitropropan 36.1 1.6E+02 0.0035 26.5 7.1 67 146-213 29-103 (418)
237 PRK14478 nitrogenase molybdenu 35.7 3.5E+02 0.0075 24.8 10.7 106 61-182 97-221 (475)
238 cd02933 OYE_like_FMN Old yello 35.4 3E+02 0.0065 23.9 14.0 94 87-184 220-313 (338)
239 PRK14477 bifunctional nitrogen 35.4 4.1E+02 0.0088 26.7 10.4 109 62-183 550-676 (917)
240 KOG0369 Pyruvate carboxylase [ 35.3 1.8E+02 0.0039 28.2 7.3 145 41-217 42-196 (1176)
241 PRK06552 keto-hydroxyglutarate 35.1 1.7E+02 0.0037 23.6 6.6 86 108-210 24-114 (213)
242 PRK10200 putative racemase; Pr 35.0 2.2E+02 0.0048 23.2 7.3 62 106-168 14-87 (230)
243 PRK02083 imidazole glycerol ph 34.9 2.6E+02 0.0055 23.0 10.9 87 119-208 162-251 (253)
244 cd03328 MR_like_3 Mandelate ra 34.8 3.1E+02 0.0067 23.9 14.8 149 40-212 138-293 (352)
245 PRK08248 O-acetylhomoserine am 34.8 2.6E+02 0.0056 25.2 8.4 61 157-217 129-191 (431)
246 PRK14041 oxaloacetate decarbox 34.6 2.1E+02 0.0045 26.3 7.7 93 112-211 27-141 (467)
247 TIGR03569 NeuB_NnaB N-acetylne 34.5 3.1E+02 0.0067 23.8 12.5 113 39-169 73-206 (329)
248 PF02679 ComA: (2R)-phospho-3- 34.4 1.5E+02 0.0032 24.7 6.1 97 113-210 25-131 (244)
249 PRK05458 guanosine 5'-monophos 34.3 3.1E+02 0.0068 23.8 8.8 125 77-210 16-145 (326)
250 smart00052 EAL Putative diguan 33.9 2.3E+02 0.0049 22.4 7.3 97 111-211 101-209 (241)
251 TIGR03849 arch_ComA phosphosul 33.9 1.2E+02 0.0025 25.2 5.4 96 113-210 12-118 (237)
252 TIGR01660 narH nitrate reducta 33.7 19 0.00041 32.7 0.9 53 155-207 264-317 (492)
253 COG0710 AroD 3-dehydroquinate 33.5 2.7E+02 0.0059 22.9 14.8 85 40-129 12-98 (231)
254 cd00740 MeTr MeTr subgroup of 33.2 2.8E+02 0.0061 23.0 11.1 103 106-214 23-128 (252)
255 COG4555 NatA ABC-type Na+ tran 33.2 2.5E+02 0.0053 23.1 6.9 48 127-176 152-202 (245)
256 PRK05588 histidinol-phosphatas 33.0 2.8E+02 0.006 22.8 12.3 22 42-64 16-37 (255)
257 PRK09454 ugpQ cytoplasmic glyc 32.8 2.7E+02 0.006 22.7 14.1 59 155-213 140-217 (249)
258 cd01971 Nitrogenase_VnfN_like 32.7 3.7E+02 0.0079 24.1 9.5 105 63-184 66-192 (427)
259 TIGR01428 HAD_type_II 2-haloal 32.6 1.5E+02 0.0032 23.0 5.9 63 112-176 62-128 (198)
260 PLN02681 proline dehydrogenase 32.3 4E+02 0.0086 24.4 11.5 162 43-216 221-413 (455)
261 PF07476 MAAL_C: Methylasparta 32.3 1.2E+02 0.0026 24.9 5.1 98 107-209 87-193 (248)
262 cd08556 GDPD Glycerophosphodie 32.2 2.3E+02 0.0049 21.5 7.7 147 41-213 12-168 (189)
263 PRK02714 O-succinylbenzoate sy 32.0 3.3E+02 0.0071 23.3 13.6 85 127-217 192-277 (320)
264 PRK12702 mannosyl-3-phosphogly 31.6 2.8E+02 0.006 23.9 7.4 148 41-209 20-173 (302)
265 PRK10551 phage resistance prot 31.6 3.8E+02 0.0083 24.8 9.1 99 109-211 364-473 (518)
266 cd06562 GH20_HexA_HexB-like Be 31.3 43 0.00092 29.3 2.7 21 39-59 67-87 (348)
267 cd02742 GH20_hexosaminidase Be 31.2 41 0.00089 28.7 2.5 35 38-74 68-102 (303)
268 COG0274 DeoC Deoxyribose-phosp 31.1 3E+02 0.0065 22.6 8.0 74 40-125 138-212 (228)
269 cd01948 EAL EAL domain. This d 31.0 2.6E+02 0.0057 22.0 8.1 98 110-211 99-208 (240)
270 KOG0173 20S proteasome, regula 30.8 51 0.0011 27.4 2.8 23 34-56 178-200 (271)
271 TIGR00433 bioB biotin syntheta 30.8 3.2E+02 0.0068 22.8 8.5 120 39-175 62-194 (296)
272 PTZ00402 glutamyl-tRNA synthet 30.8 3.1E+02 0.0067 26.1 8.2 60 107-174 99-159 (601)
273 PRK04390 rnpA ribonuclease P; 30.5 2.1E+02 0.0046 20.7 7.2 65 81-154 43-110 (120)
274 PRK07810 O-succinylhomoserine 30.4 3.4E+02 0.0073 24.1 8.3 56 164-219 142-199 (403)
275 KOG0996 Structural maintenance 30.4 42 0.00092 34.0 2.6 73 141-216 599-676 (1293)
276 cd01320 ADA Adenosine deaminas 30.4 3.4E+02 0.0073 23.0 14.4 98 108-209 140-238 (325)
277 PRK00507 deoxyribose-phosphate 30.4 3E+02 0.0065 22.4 9.9 135 38-188 18-159 (221)
278 PRK01313 rnpA ribonuclease P; 30.3 2.3E+02 0.0049 21.0 7.0 62 82-153 47-113 (129)
279 COG4992 ArgD Ornithine/acetylo 30.2 3.2E+02 0.007 24.5 7.8 46 167-212 174-225 (404)
280 COG2873 MET17 O-acetylhomoseri 30.2 4E+02 0.0088 23.9 12.4 61 44-125 66-128 (426)
281 PRK02227 hypothetical protein; 30.0 3.2E+02 0.007 22.6 10.3 154 40-208 9-183 (238)
282 cd08582 GDPD_like_2 Glyceropho 29.9 2.9E+02 0.0063 22.1 7.5 20 194-213 190-209 (233)
283 COG1131 CcmA ABC-type multidru 29.9 1.8E+02 0.0039 24.7 6.2 62 111-175 141-205 (293)
284 COG0825 AccA Acetyl-CoA carbox 29.8 55 0.0012 27.9 2.9 39 42-80 137-179 (317)
285 PF00809 Pterin_bind: Pterin b 29.8 2.8E+02 0.0062 22.1 7.1 91 120-214 29-125 (210)
286 PRK07114 keto-hydroxyglutarate 29.7 1.6E+02 0.0034 24.1 5.5 89 108-210 26-117 (222)
287 cd08568 GDPD_TmGDE_like Glycer 29.7 2.3E+02 0.005 22.7 6.6 21 41-61 13-33 (226)
288 TIGR02026 BchE magnesium-proto 29.7 4.4E+02 0.0096 24.2 10.7 54 106-162 222-276 (497)
289 PRK14466 ribosomal RNA large s 29.7 3.9E+02 0.0084 23.5 9.8 88 129-216 210-325 (345)
290 cd02742 GH20_hexosaminidase Be 29.5 73 0.0016 27.2 3.8 16 195-210 75-90 (303)
291 PRK14476 nitrogenase molybdenu 29.5 4.4E+02 0.0094 24.0 9.1 109 63-184 72-201 (455)
292 TIGR02631 xylA_Arthro xylose i 29.5 1.3E+02 0.0027 26.8 5.3 59 22-80 7-79 (382)
293 TIGR03820 lys_2_3_AblA lysine- 29.4 4.3E+02 0.0093 23.9 10.3 119 39-175 138-270 (417)
294 COG0042 tRNA-dihydrouridine sy 29.2 3.8E+02 0.0082 23.2 11.1 132 40-184 77-227 (323)
295 TIGR02814 pfaD_fam PfaD family 29.2 2.5E+02 0.0053 25.7 7.1 66 146-212 34-107 (444)
296 PF00072 Response_reg: Respons 29.0 1.8E+02 0.004 19.5 5.6 60 124-186 41-102 (112)
297 PRK11815 tRNA-dihydrouridine s 28.8 3.8E+02 0.0083 23.2 9.7 133 40-184 75-232 (333)
298 PRK02842 light-independent pro 28.7 4.3E+02 0.0094 23.7 9.5 99 70-182 80-195 (427)
299 PRK08045 cystathionine gamma-s 28.6 4.1E+02 0.0089 23.4 8.6 88 128-219 92-181 (386)
300 PLN02907 glutamate-tRNA ligase 28.6 2.8E+02 0.0061 27.0 7.8 61 106-174 259-319 (722)
301 PRK03031 rnpA ribonuclease P; 28.3 2.3E+02 0.0051 20.5 7.0 64 82-154 47-114 (122)
302 PF01791 DeoC: DeoC/LacD famil 28.3 2.9E+02 0.0063 22.4 7.0 129 43-187 20-168 (236)
303 cd05560 Xcc1710_like Xcc1710_l 28.2 2E+02 0.0043 20.5 5.3 50 163-213 38-87 (109)
304 COG4152 ABC-type uncharacteriz 28.2 3.7E+02 0.0081 22.8 8.9 69 106-176 102-199 (300)
305 PF00388 PI-PLC-X: Phosphatidy 28.1 48 0.001 24.8 2.2 20 46-65 30-49 (146)
306 PRK06176 cystathionine gamma-s 28.1 4E+02 0.0087 23.4 8.3 54 165-218 122-177 (380)
307 COG1104 NifS Cysteine sulfinat 28.1 1.4E+02 0.0031 26.6 5.3 76 143-218 103-184 (386)
308 cd01966 Nitrogenase_NifN_1 Nit 28.1 2.6E+02 0.0057 25.1 7.2 108 63-183 61-189 (417)
309 PF09370 TIM-br_sig_trns: TIM- 28.0 53 0.0011 27.6 2.5 52 109-167 66-117 (268)
310 PRK07003 DNA polymerase III su 28.0 2.6E+02 0.0057 27.6 7.4 94 108-207 101-197 (830)
311 PF00155 Aminotran_1_2: Aminot 27.8 3.8E+02 0.0083 22.8 9.6 85 125-215 91-191 (363)
312 PRK12323 DNA polymerase III su 27.6 2.2E+02 0.0048 27.5 6.7 65 108-174 106-172 (700)
313 cd00668 Ile_Leu_Val_MetRS_core 27.6 1E+02 0.0022 26.3 4.3 48 108-159 81-131 (312)
314 PLN03233 putative glutamate-tR 27.5 3.5E+02 0.0076 25.3 7.9 60 107-174 58-117 (523)
315 PF05049 IIGP: Interferon-indu 27.4 2.1E+02 0.0045 25.5 6.2 70 69-138 128-202 (376)
316 PRK09389 (R)-citramalate synth 27.4 4.9E+02 0.011 24.0 10.5 27 38-64 20-46 (488)
317 cd08562 GDPD_EcUgpQ_like Glyce 27.3 3.2E+02 0.0069 21.7 8.3 19 195-213 189-207 (229)
318 PF07555 NAGidase: beta-N-acet 27.2 1.3E+02 0.0029 25.8 4.9 98 35-163 8-111 (306)
319 TIGR02666 moaA molybdenum cofa 27.0 4E+02 0.0087 22.8 13.9 130 39-189 43-193 (334)
320 cd04747 OYE_like_5_FMN Old yel 27.0 4.4E+02 0.0095 23.2 13.4 142 39-184 134-327 (361)
321 PF06506 PrpR_N: Propionate ca 26.9 45 0.00097 25.9 1.9 65 141-210 63-130 (176)
322 cd00959 DeoC 2-deoxyribose-5-p 26.9 3.2E+02 0.0069 21.6 15.3 155 39-210 14-179 (203)
323 PRK12581 oxaloacetate decarbox 26.8 5E+02 0.011 23.9 15.0 113 39-166 102-215 (468)
324 cd06568 GH20_SpHex_like A subg 26.7 74 0.0016 27.6 3.3 35 38-74 71-105 (329)
325 TIGR00238 KamA family protein. 26.6 4.2E+02 0.0092 22.9 11.7 75 144-219 178-264 (331)
326 cd06563 GH20_chitobiase-like T 26.5 63 0.0014 28.3 2.9 34 39-74 83-116 (357)
327 COG0647 NagD Predicted sugar p 26.5 3.9E+02 0.0085 22.5 7.8 116 40-163 25-155 (269)
328 TIGR00973 leuA_bact 2-isopropy 26.4 5.2E+02 0.011 23.9 13.3 26 39-64 20-45 (494)
329 PRK07328 histidinol-phosphatas 26.4 3.7E+02 0.0081 22.2 16.4 21 44-64 20-40 (269)
330 TIGR01283 nifE nitrogenase mol 26.4 4.9E+02 0.011 23.6 12.0 138 61-214 99-277 (456)
331 PF02679 ComA: (2R)-phospho-3- 26.3 1.8E+02 0.004 24.1 5.4 86 42-135 84-169 (244)
332 PRK07811 cystathionine gamma-s 26.2 4.5E+02 0.0098 23.1 10.1 89 126-218 99-189 (388)
333 PRK05939 hypothetical protein; 25.9 4.2E+02 0.0091 23.5 8.1 66 151-218 106-174 (397)
334 PRK07671 cystathionine beta-ly 25.7 4.6E+02 0.0099 23.0 8.3 53 165-217 122-176 (377)
335 TIGR00789 flhB_rel flhB C-term 25.6 34 0.00074 23.2 0.8 35 195-230 30-64 (82)
336 PRK07920 lipid A biosynthesis 25.6 1.2E+02 0.0026 25.6 4.4 60 105-165 51-116 (298)
337 PRK07535 methyltetrahydrofolat 25.4 4E+02 0.0087 22.2 9.9 100 106-212 22-123 (261)
338 PRK13561 putative diguanylate 25.4 3.8E+02 0.0082 25.3 8.1 69 141-211 533-610 (651)
339 PRK14453 chloramphenicol/florf 25.3 4.1E+02 0.0088 23.3 7.7 93 125-217 203-331 (347)
340 cd09287 GluRS_non_core catalyt 25.3 2.4E+02 0.0052 23.3 5.9 45 108-157 51-95 (240)
341 cd00814 MetRS_core catalytic c 25.2 1.1E+02 0.0024 26.2 4.1 47 108-157 68-114 (319)
342 COG2987 HutU Urocanate hydrata 25.1 2.3E+02 0.0051 25.9 6.0 101 68-182 148-261 (561)
343 PRK10605 N-ethylmaleimide redu 25.1 4.7E+02 0.01 22.9 15.4 139 39-184 149-320 (362)
344 PRK07503 methionine gamma-lyas 24.9 4.6E+02 0.01 23.2 8.2 54 165-218 138-193 (403)
345 PRK05406 LamB/YcsF family prot 24.8 2.8E+02 0.0061 23.1 6.2 81 25-122 13-95 (246)
346 PF01244 Peptidase_M19: Membra 24.6 1.1E+02 0.0025 26.3 4.1 107 42-164 160-271 (320)
347 cd05125 Mth938_2P1-like Mth938 24.6 2.4E+02 0.0053 20.3 5.2 49 165-213 40-89 (114)
348 COG3882 FkbH Predicted enzyme 24.5 2.4E+02 0.0053 26.1 6.1 67 139-210 255-329 (574)
349 TIGR01325 O_suc_HS_sulf O-succ 24.5 4.6E+02 0.0099 23.0 8.0 52 166-217 128-181 (380)
350 PRK11267 biopolymer transport 24.4 2.5E+02 0.0054 20.9 5.5 54 106-164 81-134 (141)
351 COG3737 Uncharacterized conser 24.4 1.8E+02 0.0039 21.4 4.3 48 166-213 56-104 (127)
352 PRK15108 biotin synthase; Prov 24.4 4.8E+02 0.01 22.7 11.7 137 39-191 76-226 (345)
353 PLN02509 cystathionine beta-ly 24.3 5.1E+02 0.011 23.7 8.4 61 157-219 199-261 (464)
354 COG2877 KdsA 3-deoxy-D-manno-o 24.3 3.7E+02 0.008 22.4 6.6 87 109-208 34-134 (279)
355 COG2040 MHT1 Homocysteine/sele 24.3 4.6E+02 0.0099 22.5 12.9 168 40-213 41-241 (300)
356 PF01487 DHquinase_I: Type I 3 24.2 3.7E+02 0.0081 21.5 10.2 115 32-163 67-181 (224)
357 cd01320 ADA Adenosine deaminas 24.2 4.4E+02 0.0096 22.3 9.7 107 106-212 66-193 (325)
358 PLN02666 5-oxoprolinase 24.2 8.6E+02 0.019 25.6 10.8 102 38-140 172-282 (1275)
359 PRK04820 rnpA ribonuclease P; 24.2 3E+02 0.0065 20.8 5.8 31 85-124 87-117 (145)
360 cd08620 PI-PLCXDc_like_1 Catal 24.1 4.5E+02 0.0097 22.3 7.5 20 46-65 34-53 (281)
361 PRK10997 yieM hypothetical pro 24.0 2.9E+02 0.0063 25.5 6.7 64 110-173 398-466 (487)
362 PF09999 DUF2240: Uncharacteri 23.8 78 0.0017 24.0 2.5 43 13-59 12-54 (144)
363 PRK08419 lipid A biosynthesis 23.7 1.5E+02 0.0034 24.9 4.7 58 106-165 59-121 (298)
364 cd00807 GlnRS_core catalytic c 23.7 2.6E+02 0.0057 23.1 5.8 46 107-157 48-93 (238)
365 PHA02128 hypothetical protein 23.7 2.8E+02 0.0061 19.9 5.4 70 142-211 60-150 (151)
366 TIGR03699 mena_SCO4550 menaqui 23.6 4.7E+02 0.01 22.4 9.6 121 39-173 72-215 (340)
367 PLN02389 biotin synthase 23.6 5.2E+02 0.011 22.9 11.4 101 39-156 116-227 (379)
368 PRK10826 2-deoxyglucose-6-phos 23.4 3.2E+02 0.0069 21.6 6.3 35 141-176 94-128 (222)
369 cd07939 DRE_TIM_NifV Streptomy 23.4 4.2E+02 0.0092 21.8 14.9 176 39-222 17-224 (259)
370 COG4130 Predicted sugar epimer 23.2 4.3E+02 0.0093 21.8 7.0 54 166-219 50-110 (272)
371 PRK06361 hypothetical protein; 23.2 3.8E+02 0.0082 21.1 15.6 153 44-215 12-171 (212)
372 TIGR00381 cdhD CO dehydrogenas 23.0 5.5E+02 0.012 23.0 10.9 104 109-219 128-254 (389)
373 TIGR01284 alt_nitrog_alph nitr 23.0 5.8E+02 0.013 23.2 10.2 137 63-214 104-279 (457)
374 PF08303 tRNA_lig_kinase: tRNA 22.9 3.7E+02 0.0081 21.0 11.2 104 56-174 26-139 (168)
375 PF10941 DUF2620: Protein of u 22.9 97 0.0021 22.5 2.7 50 117-173 62-111 (117)
376 COG0502 BioB Biotin synthase a 22.9 5.2E+02 0.011 22.6 8.3 133 39-191 84-233 (335)
377 PRK14456 ribosomal RNA large s 22.8 5.4E+02 0.012 22.8 8.5 87 130-216 238-353 (368)
378 TIGR03586 PseI pseudaminic aci 22.7 5.1E+02 0.011 22.5 12.2 111 39-169 74-205 (327)
379 PF10171 DUF2366: Uncharacteri 22.7 1.9E+02 0.0041 22.7 4.6 37 127-163 78-114 (173)
380 PRK09856 fructoselysine 3-epim 22.7 1.8E+02 0.0039 23.9 4.9 52 166-217 14-72 (275)
381 PRK07764 DNA polymerase III su 22.6 4E+02 0.0087 26.4 7.8 95 108-208 102-199 (824)
382 cd08561 GDPD_cytoplasmic_ScUgp 22.6 4E+02 0.0086 21.6 6.9 22 41-62 12-33 (249)
383 CHL00162 thiG thiamin biosynth 22.6 4.7E+02 0.01 22.0 8.4 86 123-210 104-194 (267)
384 cd01301 rDP_like renal dipepti 22.5 5E+02 0.011 22.3 8.4 107 42-164 154-263 (309)
385 PF04800 ETC_C1_NDUFA4: ETC co 22.5 71 0.0015 22.6 2.0 23 195-217 59-81 (101)
386 cd08570 GDPD_YPL206cp_fungi Gl 22.4 3.5E+02 0.0075 21.8 6.4 20 194-213 193-212 (234)
387 PRK11024 colicin uptake protei 22.3 2.6E+02 0.0057 20.7 5.2 52 107-163 86-137 (141)
388 PRK04820 rnpA ribonuclease P; 22.3 3.5E+02 0.0076 20.5 7.2 64 82-154 48-114 (145)
389 cd00945 Aldolase_Class_I Class 22.3 2.3E+02 0.0051 21.6 5.3 79 41-128 64-147 (201)
390 COG0159 TrpA Tryptophan syntha 22.1 4.8E+02 0.01 22.0 8.3 71 141-213 78-155 (265)
391 TIGR00539 hemN_rel putative ox 22.1 3.5E+02 0.0075 23.5 6.7 60 21-80 111-175 (360)
392 PRK13015 3-dehydroquinate dehy 22.0 3.4E+02 0.0073 20.7 5.6 79 106-191 26-106 (146)
393 PRK00260 cysS cysteinyl-tRNA s 21.9 2.1E+02 0.0046 26.0 5.5 47 108-158 90-136 (463)
394 PRK12569 hypothetical protein; 21.9 3.5E+02 0.0076 22.5 6.2 83 25-122 14-98 (245)
395 PRK06084 O-acetylhomoserine am 21.9 4.6E+02 0.01 23.5 7.6 55 165-219 131-187 (425)
396 CHL00040 rbcL ribulose-1,5-bis 21.8 3.2E+02 0.0069 25.2 6.5 112 105-221 179-303 (475)
397 TIGR03278 methan_mark_10 putat 21.7 5.9E+02 0.013 22.9 10.5 83 106-190 54-140 (404)
398 PRK03459 rnpA ribonuclease P; 21.6 3.3E+02 0.0071 19.8 6.5 64 81-154 47-114 (122)
399 KOG2733 Uncharacterized membra 21.6 1.6E+02 0.0035 26.2 4.3 50 45-96 99-148 (423)
400 PRK10508 hypothetical protein; 21.6 1.5E+02 0.0033 25.7 4.3 22 106-127 286-307 (333)
401 COG2949 SanA Uncharacterized m 21.6 4.5E+02 0.0098 21.5 8.2 96 109-212 76-180 (235)
402 PF00728 Glyco_hydro_20: Glyco 21.6 32 0.00069 29.7 0.1 32 39-75 70-104 (351)
403 PF07994 NAD_binding_5: Myo-in 21.5 2.2E+02 0.0047 24.4 5.1 95 108-210 131-230 (295)
404 cd00316 Oxidoreductase_nitroge 21.5 5.5E+02 0.012 22.4 10.3 89 127-215 112-234 (399)
405 PRK14455 ribosomal RNA large s 21.5 5.6E+02 0.012 22.5 8.3 88 130-217 223-338 (356)
406 COG2022 ThiG Uncharacterized e 21.4 4.5E+02 0.0098 21.9 6.6 53 106-158 80-133 (262)
407 cd08590 PI-PLCc_Rv2075c_like C 21.4 4E+02 0.0087 22.3 6.6 18 47-64 46-63 (267)
408 KOG1579 Homocysteine S-methylt 21.3 3.5E+02 0.0075 23.5 6.2 112 40-151 51-186 (317)
409 PRK08861 cystathionine gamma-s 21.2 5.8E+02 0.013 22.6 11.5 90 127-220 92-183 (388)
410 COG4948 L-alanine-DL-glutamate 21.2 5.5E+02 0.012 22.3 14.0 154 40-213 143-298 (372)
411 TIGR00238 KamA family protein. 21.2 5.4E+02 0.012 22.2 9.5 101 41-156 144-251 (331)
412 cd00812 LeuRS_core catalytic c 21.2 1.4E+02 0.0031 25.5 4.0 49 108-157 68-116 (314)
413 cd07939 DRE_TIM_NifV Streptomy 21.2 4.7E+02 0.01 21.5 9.9 79 43-137 111-192 (259)
414 KOG3131 Uncharacterized conser 21.2 4.9E+02 0.011 21.8 7.3 99 106-217 41-151 (281)
415 PRK00499 rnpA ribonuclease P; 21.2 3.2E+02 0.0068 19.5 6.9 64 81-154 37-104 (114)
416 PRK11893 methionyl-tRNA synthe 21.2 1.5E+02 0.0032 27.2 4.4 49 108-159 69-117 (511)
417 COG1387 HIS2 Histidinol phosph 21.1 4.6E+02 0.01 21.4 9.8 149 45-209 19-190 (237)
418 cd00818 IleRS_core catalytic c 21.1 1.1E+02 0.0024 26.5 3.4 47 109-158 87-135 (338)
419 cd00466 DHQase_II Dehydroquina 21.1 3.2E+02 0.0069 20.7 5.3 79 106-191 24-104 (140)
420 PRK05904 coproporphyrinogen II 21.1 5.6E+02 0.012 22.3 8.1 17 205-221 253-269 (353)
421 COG1540 Uncharacterized protei 21.0 1.2E+02 0.0027 25.0 3.3 32 25-57 13-59 (252)
422 PRK07269 cystathionine gamma-s 21.0 2.4E+02 0.0051 24.7 5.5 55 165-219 124-180 (364)
423 PF13289 SIR2_2: SIR2-like dom 21.0 2.9E+02 0.0064 19.8 5.3 66 142-209 74-143 (143)
424 COG0419 SbcC ATPase involved i 21.0 2.4E+02 0.0052 28.2 6.0 58 113-172 826-888 (908)
425 PLN02775 Probable dihydrodipic 20.9 5.3E+02 0.011 22.0 7.8 58 115-176 68-125 (286)
426 PRK14536 cysS cysteinyl-tRNA s 20.8 2.6E+02 0.0056 25.8 5.8 47 108-158 100-146 (490)
427 cd04735 OYE_like_4_FMN Old yel 20.7 5.7E+02 0.012 22.3 12.6 91 84-184 214-312 (353)
428 PF04430 DUF498: Protein of un 20.7 1.4E+02 0.003 21.2 3.3 48 166-213 40-88 (110)
429 TIGR01326 OAH_OAS_sulfhy OAH/O 20.6 6E+02 0.013 22.6 8.1 54 165-218 130-185 (418)
430 PRK09413 IS2 repressor TnpA; R 20.6 1.5E+02 0.0033 21.4 3.5 41 39-81 13-53 (121)
431 KOG3380 Actin-related protein 20.5 87 0.0019 23.9 2.2 48 113-160 89-142 (152)
432 COG1902 NemA NADH:flavin oxido 20.5 6E+02 0.013 22.4 14.3 140 39-183 139-316 (363)
433 cd07491 Peptidases_S8_7 Peptid 20.4 2.5E+02 0.0054 23.0 5.2 51 40-90 87-141 (247)
434 PF01680 SOR_SNZ: SOR/SNZ fami 20.3 52 0.0011 26.0 1.0 16 117-132 87-102 (208)
435 PF14606 Lipase_GDSL_3: GDSL-l 20.3 4.3E+02 0.0094 20.7 7.4 92 43-136 50-146 (178)
436 cd00945 Aldolase_Class_I Class 20.3 3.9E+02 0.0085 20.3 9.1 95 40-154 11-109 (201)
437 cd03770 SR_TndX_transposase Se 20.2 2.1E+02 0.0046 21.1 4.3 50 113-162 55-105 (140)
438 PF09334 tRNA-synt_1g: tRNA sy 20.1 1.5E+02 0.0033 26.4 4.0 48 109-159 68-115 (391)
439 PF04748 Polysacc_deac_2: Dive 20.1 4.7E+02 0.01 21.1 7.5 53 39-94 71-129 (213)
440 PRK05904 coproporphyrinogen II 20.1 3.4E+02 0.0074 23.7 6.2 60 21-80 114-178 (353)
441 PF10281 Ish1: Putative stress 20.1 1.4E+02 0.003 16.7 2.6 35 163-203 2-36 (38)
442 KOG3206 Alpha-tubulin folding 20.0 50 0.0011 26.7 0.9 13 54-66 199-211 (234)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.8e-56 Score=381.24 Aligned_cols=217 Identities=44% Similarity=0.718 Sum_probs=196.8
Q ss_pred CCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCC-CCCEE
Q 026625 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQ 87 (235)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~-R~~~~ 87 (235)
|++++||++|++||+||||||.+|+.+. ..+.+++.++|++|+++||||||||+.||.|.||+++|+||+..+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 6899999999999999999999987422 235567888999999999999999999999999999999999744 89999
Q ss_pred EEeccccccCCCccc-ccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 88 VATKFGFVELGFTSV-IVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 88 I~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
|+||++......+.. ..+.++++|+++++.||+|||+||||+|++|+|+...+..+.+++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999998776421222 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccCCCCCCCC
Q 026625 167 PDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVE 226 (235)
Q Consensus 167 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~ 226 (235)
.+++.++.+. .+++++|.+||++++..+.+++++|+++||++++||||++|+|++++.+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 9999999998 69999999999999877777999999999999999999999999996653
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.3e-53 Score=359.39 Aligned_cols=223 Identities=46% Similarity=0.747 Sum_probs=202.0
Q ss_pred CCCCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCC
Q 026625 7 LQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRE 84 (235)
Q Consensus 7 ~~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~ 84 (235)
+.|+|+++|++|++||++|||||.+.. |+...+++++.++++.|+++|+|+||||+.||.|.||..+|++|++ .+|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 468999999999999999999985544 5555799999999999999999999999999999999999999999 7899
Q ss_pred CEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
+++|+||++.... +......++..+..+++.|+++|+++|||+|++||+|+..++++++++|.+++++|+|++||+|+
T Consensus 89 ~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 9999999987662 12245667889999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCC--eeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccCCCCCC-CCCCCCCC
Q 026625 165 ASPDTIRRAHAVHP--ITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAV-VESVPLDS 232 (235)
Q Consensus 165 ~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~-~~~~~~~~ 232 (235)
++.+++.++....+ ++++|++||++.|+.+ .++++.|++.||++++||||++|+|||++. .++.|.+.
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~ 238 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGD 238 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccc
Confidence 99999999998876 9999999999999855 669999999999999999999999999943 46666654
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.7e-50 Score=347.20 Aligned_cols=210 Identities=30% Similarity=0.478 Sum_probs=183.8
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCEEE
Q 026625 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (235)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I 88 (235)
||+||++|++||+||||||++ +|...+.+++.++|+.|+++|||+||||+.||.|.||+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 2223578899999999999999999999999999999999999985 36999999
Q ss_pred EeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHH
Q 026625 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (235)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 168 (235)
+||+++.... ......+++.+++++++||++||+||||+|++|+|++..+++++|++|++|+++|+||+||||||+.+
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998542110 01124579999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHhc------CCeeEEeeccCcccccc-cchHHHHHHHhCCeEEecccCccccCCCCCCC
Q 026625 169 TIRRAHAV------HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFFGGKAVV 225 (235)
Q Consensus 169 ~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 225 (235)
+++++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++.+
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~ 219 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDS 219 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCC
Confidence 98876532 46789999999999874 56899999999999999999999999998643
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.9e-50 Score=348.50 Aligned_cols=215 Identities=29% Similarity=0.532 Sum_probs=186.2
Q ss_pred cCCCCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCC--CcHHHHHHHHHhc---
Q 026625 6 KLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKE--- 80 (235)
Q Consensus 6 ~~~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~lG~al~~--- 80 (235)
++.|++++||++|++||+||||||+. +|...+.+++.++|+.|+++|||+||||+.||+ |.+|+.+|++|++
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~ 86 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFA 86 (346)
T ss_pred CCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhccc
Confidence 46799999999999999999999972 332336678899999999999999999999995 8999999999986
Q ss_pred CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEE
Q 026625 81 LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 160 (235)
Q Consensus 81 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i 160 (235)
..|++++|+||++..... +......+++.+++++++||++||+||||+|++|+|+...+++++|++|++|+++||||+|
T Consensus 87 ~~Rd~~~I~TK~g~~~~~-~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~i 165 (346)
T PRK09912 87 AYRDELIISTKAGYDMWP-GPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYV 165 (346)
T ss_pred CCCCeEEEEEEecccCCC-CcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 269999999998753111 0111235799999999999999999999999999998888899999999999999999999
Q ss_pred EeCCCCHHHHHHHHhc-----CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccCCCCCC
Q 026625 161 GLSEASPDTIRRAHAV-----HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAV 224 (235)
Q Consensus 161 GvSn~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 224 (235)
|||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++.
T Consensus 166 GvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~ 235 (346)
T PRK09912 166 GISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYL 235 (346)
T ss_pred EecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCC
Confidence 9999999988866542 467899999999998655 579999999999999999999999999854
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.9e-50 Score=346.87 Aligned_cols=217 Identities=27% Similarity=0.386 Sum_probs=184.9
Q ss_pred CCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCC-------CCcHHHHHHHHHhc-
Q 026625 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYG-------PYTNEILLGKALKE- 80 (235)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~sE~~lG~al~~- 80 (235)
|++++||++|++||+||||||+||+ ..+++++.++|+.|+++|||+||||+.|| .|.||+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6789999999999999999999874 24678999999999999999999999998 48899999999985
Q ss_pred CCCCCEEEEeccccccCCCcc---cccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----------------CCC
Q 026625 81 LPRENIQVATKFGFVELGFTS---VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----------------SVP 140 (235)
Q Consensus 81 ~~R~~~~I~tK~~~~~~~~~~---~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-----------------~~~ 140 (235)
.+|++++|+||++......+. .....+++.+++++++||++||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 469999999998632110000 012467999999999999999999999999999964 235
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc------CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccC
Q 026625 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl 214 (235)
+.++|++|++|+++|+||+||+|||+.+++++++.. ..+.++|++||++++..+.+++++|+++||++++||||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776532 35789999999999876678999999999999999999
Q ss_pred ccccCCCCCCCCCCC
Q 026625 215 GRGFFGGKAVVESVP 229 (235)
Q Consensus 215 ~~G~L~~~~~~~~~~ 229 (235)
++|+|++++.+...|
T Consensus 237 ~~G~Ltg~~~~~~~~ 251 (346)
T PRK10625 237 AFGTLTGKYLNGAKP 251 (346)
T ss_pred cCeeccCCCCCCCCC
Confidence 999999985444334
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.8e-50 Score=333.35 Aligned_cols=188 Identities=32% Similarity=0.553 Sum_probs=169.1
Q ss_pred CCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCE
Q 026625 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENI 86 (235)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~ 86 (235)
+++.++ ++|.+||.||||||++++ .+.+.+++.+|++.|+|+||||..|| ||+.+|+|+++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 346777 567889999999999764 23378999999999999999999999 99999999999 789999
Q ss_pred EEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
||+||+|... ..++.+.+++++||++||+||+|+|++|||.+. ..+.++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999875 457889999999999999999999999999752 33789999999999999999999999
Q ss_pred CCHHHHHHHHhc--CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCcccc
Q 026625 165 ASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 165 ~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
|+.++++++++. ..|+++|++||++.+. .+++++|+++||.+++||||++|.
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~ 196 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGG 196 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCccccc
Confidence 999999999876 4589999999999996 459999999999999999999654
No 7
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.5e-48 Score=328.97 Aligned_cols=208 Identities=43% Similarity=0.695 Sum_probs=189.2
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCC-CCCEEEE
Q 026625 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQVA 89 (235)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~-R~~~~I~ 89 (235)
+++||++|+.||+||||||+++..| .+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987655 47899999999999999999999999999999999999999855 9999999
Q ss_pred eccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCccEEEeCCCCHH
Q 026625 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPD 168 (235)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 168 (235)
||++..... ....+++.+++++++||++||++|||+|++|+|+.... ..++|++|++++++|+||+||||||+.+
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865421 13467999999999999999999999999999987665 8899999999999999999999999999
Q ss_pred HHHHHHhc--CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccCCCCCCC
Q 026625 169 TIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVV 225 (235)
Q Consensus 169 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 225 (235)
.+.++... .+++++|++||++++..+.+++++|+++||++++|+||++|.|+++..+
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~ 212 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLP 212 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCC
Confidence 99999887 8999999999999997655799999999999999999999999988543
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.2e-48 Score=335.39 Aligned_cols=206 Identities=32% Similarity=0.543 Sum_probs=179.5
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCEEE
Q 026625 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (235)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I 88 (235)
||+||++|++||.||||||++|+.|+. .+++++.++++.|++.|||+||||+.||.|.+|+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876664 478899999999999999999999999999999999999997 47999999
Q ss_pred EeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCccEEEeCCC
Q 026625 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 165 (235)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvSn~ 165 (235)
+||++.... ..+.+++.+++++++||++||+||||+|++|+|+.. ..+.++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999974321 123579999999999999999999999999999642 346789999999999999999999999
Q ss_pred CHHHHHHHHhc-----CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccCCCCC
Q 026625 166 SPDTIRRAHAV-----HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKA 223 (235)
Q Consensus 166 ~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 223 (235)
++++++.+... ..+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCC
Confidence 99888776653 23445678899887643 58999999999999999999999999874
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=9e-47 Score=312.70 Aligned_cols=186 Identities=31% Similarity=0.480 Sum_probs=170.0
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc------CCCC
Q 026625 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE------LPRE 84 (235)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~------~~R~ 84 (235)
+.+| ++|.++|.||||||+. +..++.++++.|++.|+||||||..|+ +|+.+|+||++ ++|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 8999999999999872 568899999999999999999999999 99999999996 6899
Q ss_pred CEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----------------CCHHHHHHHH
Q 026625 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----------------VPIEETIGEM 148 (235)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----------------~~~~~~~~~l 148 (235)
++||+||+|... ..++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999999764 358899999999999999999999999999543 3467899999
Q ss_pred HHHHHcCCccEEEeCCCCHHHHHHHHhc--CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccC
Q 026625 149 KKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 149 ~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
++++++|++|+||||||+..++++++.. .+|.++|++|+++.+. +++++||+++||.|.|||||+++--
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC
Confidence 9999999999999999999999999987 6789999999998874 7899999999999999999997753
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=8.5e-46 Score=314.31 Aligned_cols=203 Identities=28% Similarity=0.481 Sum_probs=174.7
Q ss_pred ceecCCCCcccCcceeccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEE
Q 026625 11 RVKLGTQGLEVSKLGYGCMSLSG--CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQV 88 (235)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I 88 (235)
+.+|+ |++||+||||||++++ .||...+++++.++|+.|++.|||+||||+.||+|.+|+.+|++++ ..|++++|
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~-~~R~~~~i 85 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALH-PYPDDLTI 85 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHh-cCCCeEEE
Confidence 34563 9999999999999975 3665557889999999999999999999999999999999999997 36999999
Q ss_pred EeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCCccEEEeC
Q 026625 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
+||++.............+++.+++++++||++||+||||+|++|+++. ..++.+.|++|++|+++||||+||||
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvS 165 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLS 165 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEec
Confidence 9998753311111123467999999999999999999999999887421 23578899999999999999999999
Q ss_pred CCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccc
Q 026625 164 EASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 164 n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (235)
||+.++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++
T Consensus 166 n~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 166 NVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred CCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCC
Confidence 999999999988889999999999999763 67999999999999999999843
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=6.5e-46 Score=313.86 Aligned_cols=196 Identities=38% Similarity=0.624 Sum_probs=171.2
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCEEEEeccccccCCCc
Q 026625 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVELGFT 100 (235)
Q Consensus 23 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~ 100 (235)
+||||||++++. ..+.+++.++++.|++.|||+||||+.||.|.+|+.+|++|+. .+|++++|+||+....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~---- 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG---- 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc----
Confidence 589999998753 4689999999999999999999999999999999999999998 7899999999992211
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHH--HhcC
Q 026625 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA--HAVH 177 (235)
Q Consensus 101 ~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~--~~~~ 177 (235)
......+++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2344578999999999999999999999999999999888 899999999999999999999999999999999 4557
Q ss_pred CeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccCCCCCCC
Q 026625 178 PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVV 225 (235)
Q Consensus 178 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 225 (235)
+++++|++||++++....+++++|+++||++++|+||++|+|+++...
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccCcccccccc
Confidence 899999999999776678999999999999999999999999998543
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.4e-45 Score=310.46 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=168.0
Q ss_pred CcccCcceeccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEe
Q 026625 18 GLEVSKLGYGCMSLSGC-------YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVAT 90 (235)
Q Consensus 18 g~~vs~lg~G~~~~~~~-------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~t 90 (235)
+++||+||||||+||+. |+. .+++++.++|+.|++.|||+||||+.|| .||+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999863 343 5889999999999999999999999997 6999999999843345788888
Q ss_pred ccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCCccEEEeCCCCHH
Q 026625 91 KFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPD 168 (235)
Q Consensus 91 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~ 168 (235)
|.. ..+++.+++++++||++||+||||+|++|+|+.. .+. .++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 1357899999999999999999999999999763 233 578999999999999999999999999
Q ss_pred HHHHHHhcCCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccCCCC
Q 026625 169 TIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (235)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 222 (235)
++.++....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++.
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 99888877899999999999998654 4799999999999999999999999864
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=9.2e-45 Score=304.59 Aligned_cols=180 Identities=26% Similarity=0.420 Sum_probs=161.4
Q ss_pred ccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCEEEEeccccccC
Q 026625 20 EVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVEL 97 (235)
Q Consensus 20 ~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I~tK~~~~~~ 97 (235)
+||+||||||+++ .+++.++++.|++.|||+||||+.|| +|+.+|++|+. .+|++++|+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 5899999999753 36789999999999999999999999 79999999986 479999999998532
Q ss_pred CCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHh
Q 026625 98 GFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (235)
Q Consensus 98 ~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~ 175 (235)
..+++.+++++++||++||+||||+|++|+|++. .+..++|++|++|+++||||+||||||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 2468899999999999999999999999999763 4678999999999999999999999999999998876
Q ss_pred c---CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccCCC
Q 026625 176 V---HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGG 221 (235)
Q Consensus 176 ~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 221 (235)
. .+++++|++||++++. .+++++|+++||+|++|+||++|.+..
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~ 188 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLK 188 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccC
Confidence 4 3689999999999874 689999999999999999999997654
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.5e-44 Score=288.49 Aligned_cols=210 Identities=30% Similarity=0.430 Sum_probs=189.6
Q ss_pred CCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCE
Q 026625 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENI 86 (235)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~ 86 (235)
|+++++++.++++|++.+|+|++.. |+- +..++...+++|++.|||+||-|+.||.+..|+.+|.+|+. .-|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6789999999999999999999986 654 56889999999999999999999999999999999999997 469999
Q ss_pred EEEeccccccCCC---cccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC
Q 026625 87 QVATKFGFVELGF---TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 87 ~I~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
.|.||++...+.. .....+.+.++|..++++||.+|++||+|++++|+||+..+.+++.+++..|.+.||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999876432 1134577999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhc--CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccCCC
Q 026625 164 EASPDTIRRAHAV--HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGG 221 (235)
Q Consensus 164 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~ 221 (235)
||++.+++-+.+. .++++||++.|+++...- ++.+++|+++.|.+++||||++|-+..
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~ 218 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFL 218 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcccc
Confidence 9999999888766 458999999999998643 789999999999999999999985443
No 15
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.6e-44 Score=286.05 Aligned_cols=227 Identities=29% Similarity=0.481 Sum_probs=195.9
Q ss_pred cccCCCCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCC
Q 026625 4 DKKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPR 83 (235)
Q Consensus 4 ~~~~~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R 83 (235)
.||..|.+|.+|+||++||+++||+..++..|+. .++++....+..|++.|||+||||+.||.+++|..+|.+++++||
T Consensus 17 ~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR 95 (342)
T KOG1576|consen 17 EKVRRMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPR 95 (342)
T ss_pred HHHHHHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCCh
Confidence 5677899999999999999999999999998887 477787777777999999999999999999999999999999999
Q ss_pred CCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCccE
Q 026625 84 ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKY 159 (235)
Q Consensus 84 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~ 159 (235)
+.++|+||++....+ .....+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++||||+
T Consensus 96 ~aYyIaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rf 174 (342)
T KOG1576|consen 96 EAYYIATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRF 174 (342)
T ss_pred hheeeeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeE
Confidence 999999999876533 123467899999999999999999999999999987654 235689999999999999999
Q ss_pred EEeCCCCHHHHHHHHhc--CCeeEEe--eccCcccccccchHHHHHHHhCCeEEecccCccccCCCCCCCCCCCCCCC
Q 026625 160 IGLSEASPDTIRRAHAV--HPITAVQ--LEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSF 233 (235)
Q Consensus 160 iGvSn~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~ 233 (235)
||++.++.+-+.++.+. +.++++- .+|++.+... -..+++.+++|++|+..++++.|+|+.+-.++..|..+.
T Consensus 175 iGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~E 251 (342)
T KOG1576|consen 175 IGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDE 251 (342)
T ss_pred eeecccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHH
Confidence 99999999999998876 4466666 4555555432 467788889999999999999999999977788887553
No 16
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.8e-42 Score=290.61 Aligned_cols=183 Identities=30% Similarity=0.376 Sum_probs=163.3
Q ss_pred ceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCEEE
Q 026625 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (235)
Q Consensus 11 ~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I 88 (235)
+.+| ++|+.||.||||||++ +.+++.++++.|++.|+|+||||+.|| +|+.+|++|+. .+|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 4667 7899999999999874 357899999999999999999999998 79999999986 46999999
Q ss_pred EeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCccEEEeCCCCH
Q 026625 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
+||++.. +++.+++++++||++||+||||+|++|+|++.. +..++|++|++|+++|+||+||||||++
T Consensus 74 ~tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 142 (275)
T PRK11565 74 TTKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQI 142 (275)
T ss_pred EEEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCH
Confidence 9998632 367899999999999999999999999997653 4679999999999999999999999999
Q ss_pred HHHHHHHhc--CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCcccc
Q 026625 168 DTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 168 ~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
++++++... ..+.++|++||++.+. .+++++|+++||.+++|+||++|.
T Consensus 143 ~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 143 HHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC
Confidence 999998754 3578999999998874 679999999999999999999773
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=291.57 Aligned_cols=205 Identities=29% Similarity=0.383 Sum_probs=186.4
Q ss_pred CCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEE
Q 026625 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQV 88 (235)
Q Consensus 9 m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I 88 (235)
|.||++|++|.++|.+|||||++...|...+|++.+.++|+.|++.|||+||||..|..|.||..+|+||+...|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999987877789999999999999999999999999977799999999999988999999
Q ss_pred EeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcCCccEEEeC
Q 026625 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvS 163 (235)
+||+..... -+++.+++-++++|++|++||+|+|++|.... ..++ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 999974331 36889999999999999999999999999976 3332 369999999999999999999
Q ss_pred CCC-HHHHHHHHhcCCeeEEeeccCccccccc--chHHHHHHHhCCeEEecccCccccCCCC
Q 026625 164 EAS-PDTIRRAHAVHPITAVQLEWSLWARDIE--NEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (235)
Q Consensus 164 n~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~ 222 (235)
.|+ .+.+.+++...+++++|++||.++.... .+.+++|+++|++|+.++|+.+|-|+..
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~ 213 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN 213 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC
Confidence 997 4778889999999999999999998754 3899999999999999999999998874
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.26 E-value=2.7e-06 Score=68.66 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc--CCeeEEeeccCcccccccchHHHHHHHhCCeEEecc
Q 026625 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (235)
+.+.|+.|++++.+|+|..||||.|+..++++++.. ..|..+|++..-.+.- ..++.+||.+++|.+...|
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecC
Confidence 457899999999999999999999999999999987 4577888877665553 3799999999999999876
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.77 E-value=0.37 Score=41.36 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC-cHHHHHHHHHhc-CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
+.++..+.++.+.+.|++.|+.-- |.. ..+...=+++++ .+ ++-|.-+.... .+.+... .+-+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g--~~~l~vD~n~~----------~~~~~A~-~~~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP--DARLRVDANQG----------WTPEEAV-ELLR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC--CCeEEEeCCCC----------cCHHHHH-HHHH
Confidence 567777888889999999998743 211 122223334444 33 55666665322 2333322 2334
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-EN 195 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 195 (235)
.|+.++ +.++..|-+. .-++.+.+|++.-.|. ..|=+-++.+++.++++....+++|+..+.+-.-. -.
T Consensus 199 ~l~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~ 269 (316)
T cd03319 199 ELAELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEAL 269 (316)
T ss_pred HHHhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHH
Confidence 455554 4444544322 3466778888877666 33446678999999999888999999866543211 26
Q ss_pred hHHHHHHHhCCeEEecccCccc
Q 026625 196 EIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 196 ~l~~~~~~~gi~v~a~spl~~G 217 (235)
.+..+|+++|+.++..+-+..+
T Consensus 270 ~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 270 RIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHcCCCEEEECchhhH
Confidence 7899999999999986554433
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.63 E-value=4.4 Score=35.32 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC-----CcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
+.++..+.++.+.+.|++.|-.--..+. -..+...=+++++.-.+++.|.-.... ..+.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~- 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAIR- 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHHH-
Confidence 4677778888889999999865322221 011222223444422345555554421 123333332
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI 193 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 193 (235)
.+++|. ..++.+++.|-+. +.++.+.++++.-.+. ..|=|.++++++.++++...++++|+...-.-.-.
T Consensus 208 ---~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 208 ---LARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred ---HHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 233332 2345556655432 3567777888775555 33445678999999998888899999766543211
Q ss_pred -cchHHHHHHHhCCeEEeccc
Q 026625 194 -ENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 194 -~~~l~~~~~~~gi~v~a~sp 213 (235)
-..+.+.|+++|+.++..+-
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 26789999999999887654
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.16 E-value=2.5 Score=33.67 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH--------
Q 026625 46 SIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA-------- 117 (235)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~-------- 117 (235)
++|..-++.|-+.+|-.-..| .+-+.|+.. +++. . ...+.+++.+.+++.+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~~--k~v~----g---------~GvEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKDE--KQVD----G---------YGVEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHHh--cCCe----E---------EEEecCHHHHHHHHHcCCCEEECC
Confidence 566777888999999887665 334555521 1111 0 1123456666666554
Q ss_pred ---HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHh-c-CCeeEEeeccCccccc
Q 026625 118 ---SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA-V-HPITAVQLEWSLWARD 192 (235)
Q Consensus 118 ---sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~-~-~~~~~~q~~~n~~~~~ 192 (235)
.|....-+..|.+.+..- -..+..-.+.|+++.+-|+---|++.||.....+.-+- . .-|..-+++|+-++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 344444445555555422 11233445667888888998889999998776655443 2 2355677888877753
Q ss_pred c-----cchHHHHHHHhCCeEEecccCcccc
Q 026625 193 I-----ENEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 193 ~-----~~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
. -.++-++|++.|+.|.-..++..+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 2 2789999999999999999998766
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=92.58 E-value=5.4 Score=33.24 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
+.++..+.++.+.+.|++.|-.--.-. ...+...=+++++.-.+++.|.-.... ..+.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~-~~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD-PARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC-HHHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 456677788888999999887542111 012223334555422334444333221 12343333322 344
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchH
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEI 197 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l 197 (235)
+.++ +.+++.|-+. +.++.+.++++.-.+. ..|=+-++..++.++++...++++|+..+..-.-. -..+
T Consensus 153 ~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 4444 4445655432 2457777787775555 34446678899999988888999999876554311 2678
Q ss_pred HHHHHHhCCeEEecccCccc
Q 026625 198 VPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G 217 (235)
.+.|+++|+.++..+.+..|
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHcCCcEEecCccchH
Confidence 99999999999987665544
No 23
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=90.30 E-value=5.6 Score=31.73 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
+++++.+.++.|++.|++..|.- +..+-.+++. +.++++++.-=. ...+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~~-------------~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHVM-------------MSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHHH-------------HHHHHHHHHH
Confidence 78999999999999998877643 2344444443 345555542211 1234455555
Q ss_pred HHHHHHcCC----CcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEEeeccCccc
Q 026625 116 EASLRRLDV----EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (235)
Q Consensus 116 ~~sL~~Lg~----~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (235)
......+.. ..---+++-.+..+.+--...=.-.-|+..|. |.++|. +-+.+.+.+.+....++++.+.++...
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccccc
Confidence 444444431 11112344444333322233333334556775 777884 566788888888888899988877655
Q ss_pred cccc-chHHHHHHHhCC
Q 026625 191 RDIE-NEIVPLCRELGI 206 (235)
Q Consensus 191 ~~~~-~~l~~~~~~~gi 206 (235)
.... .++++.+++.|.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 5333 778899998854
No 24
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=90.20 E-value=1.2 Score=35.87 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=46.8
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeecc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 186 (235)
....+|.|++=+++...-....+.+.+-+....+ .+.++.+||. |.+++.+.++.+..+++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 3457999999997544333334444443333332 3568899995 88899999999989999999964
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.76 E-value=3 Score=34.53 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEeCCCCHHHHHHHHhcCCeeEEee
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 184 (235)
++.+...+-+ ..|..+|+++|++-..-.+.........++.++++.+.+ .++...++....+.++.+.+. .++.+++
T Consensus 16 ~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~i 93 (265)
T cd03174 16 FSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVRI 93 (265)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEEE
Confidence 4555555544 457788998888866654422222346788889999888 677767776656777777665 3566666
Q ss_pred ccCccc--------ccc------cchHHHHHHHhCCeEEecc
Q 026625 185 EWSLWA--------RDI------ENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 185 ~~n~~~--------~~~------~~~l~~~~~~~gi~v~a~s 212 (235)
.+..-+ +.. -...+++++++|+.+...-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 665441 111 1467888999998776554
No 26
>PRK08609 hypothetical protein; Provisional
Probab=89.28 E-value=14 Score=34.61 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCC-----CCcHHHHHHHHHhc-------CCCCCEEEEeccccccCCCcccccCCCHHHH
Q 026625 44 GISIIKHAFSKGITFFDTADKYG-----PYTNEILLGKALKE-------LPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg-----~g~sE~~lG~al~~-------~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
..++++.|.+.|+.+|=.++++. .|.+...+-..++. ...=++++..-+.... +..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------------~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------------DGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------------Ccc
Confidence 45699999999999998887752 12233333322221 1111233333222211 111
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC------CC--H---HHHHHHHhcCCee
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--P---DTIRRAHAVHPIT 180 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn------~~--~---~~l~~~~~~~~~~ 180 (235)
..-.+..|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+--||=-. +. . +.+.+++.... .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2222234443 4555 666786533 34567889999999888887776443 11 1 23333322233 3
Q ss_pred EEeeccCcccccccchHHHHHHHhCCeEEe
Q 026625 181 AVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 181 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
++|++-+.+.......++..|.+.|+.+..
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~i 523 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLAI 523 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEEE
Confidence 677777666544457899999999997653
No 27
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=88.99 E-value=3.6 Score=33.29 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeC-CCCHHHHHHHHhcCCeeEEeeccCcccccccch
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPDTIRRAHAVHPITAVQLEWSLWARDIENE 196 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 196 (235)
...+|.||+=+++.-.-......++ ..++.+.-. ++.+||. |.+.+.+.++++..+++.+|++-. ...+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCHH
Confidence 3478999988876653223343333 333333333 8899996 677889999999999999998643 2356
Q ss_pred HHHHHHHhC-CeEE
Q 026625 197 IVPLCRELG-IGIV 209 (235)
Q Consensus 197 l~~~~~~~g-i~v~ 209 (235)
.++..++.. +.|+
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 777777664 5554
No 28
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=88.51 E-value=0.21 Score=43.50 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=40.9
Q ss_pred cCCccEEEeCCCCHHHHHHHHhcC-CeeEEeeccCcccccccchHHHHHHHhCCe
Q 026625 154 EGKIKYIGLSEASPDTIRRAHAVH-PITAVQLEWSLWARDIENEIVPLCRELGIG 207 (235)
Q Consensus 154 ~G~ir~iGvSn~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 207 (235)
-|+||++||--++.+++.++.+.. .-+..+.+..++-...+..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 489999999999999999988662 234445555555555567889999998875
No 29
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.15 E-value=14 Score=29.54 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
|++++.+.+..+++.|+...|.- +..+-.++++ +.++++++.-=. ...+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHHH
Confidence 78899999999999997655432 2344444443 445555554321 1233444444
Q ss_pred HHHHHHcCCCc---ccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccc
Q 026625 116 EASLRRLDVEY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR 191 (235)
Q Consensus 116 ~~sL~~Lg~~~---iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~ 191 (235)
......+.... ---+++-.+..+.+--...=.-.-|+..|. |.++| .+-+.+.+.+.+....++++-+.++....
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 44444443221 123445544433332222223334667786 56778 66778888888888888888887765554
Q ss_pred ccc-chHHHHHHHhCC
Q 026625 192 DIE-NEIVPLCRELGI 206 (235)
Q Consensus 192 ~~~-~~l~~~~~~~gi 206 (235)
-.. ..+++.+++.+.
T Consensus 147 ~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 147 MGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 322 678888888854
No 30
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=86.70 E-value=2.5 Score=34.15 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=44.7
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeecc
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 186 (235)
+..+|.|++=+++...-......+.+-+....+ .+.+..+||. |-+++.+.++++...++++|++-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 346899999887433222223333333333322 3568999996 67889999999989999999964
No 31
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=85.42 E-value=6.6 Score=31.91 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=61.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chHHHHHHHh
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCREL 204 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~ 204 (235)
.++.++..|-+. +.++.+.+|.+...+. ..+=|.++.+.+.+++....++++|+..+..-.-.+ ..+.++|+++
T Consensus 120 ~~i~~iEeP~~~----~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAP----DDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCc----cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 466667766433 2456677788777665 334456778888888887788999987765533112 6789999999
Q ss_pred CCeEEecccCccc
Q 026625 205 GIGIVPYCPLGRG 217 (235)
Q Consensus 205 gi~v~a~spl~~G 217 (235)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998876544
No 32
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.79 E-value=25 Score=30.31 Aligned_cols=133 Identities=12% Similarity=-0.027 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC---C-----CCCCC----cHHHHHHHHHhcC---CCCCEEEEeccccccCCCccccc
Q 026625 40 SEEDGISIIKHAFSKGITFFDTA---D-----KYGPY----TNEILLGKALKEL---PRENIQVATKFGFVELGFTSVIV 104 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~-----~Yg~g----~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~ 104 (235)
++++..++...+.+.|+..||-- + .||.| ..-+.+.+.++.+ -.+++-|+-|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 66777778888889999999832 1 35544 2334455555542 1225778888764321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHH---HHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCee
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE---ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPIT 180 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~---~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~ 180 (235)
+.+.. ..+-+.++..| +|.+-+|.-....... .-|+...++++.=.|.-||... .++++.+++++....+
T Consensus 146 --~~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGERK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchHH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 11222 24445567777 5777888654322111 1378888888887788888877 4788888888776666
Q ss_pred EEeec
Q 026625 181 AVQLE 185 (235)
Q Consensus 181 ~~q~~ 185 (235)
.+++-
T Consensus 220 gVmiG 224 (312)
T PRK10550 220 AVMIG 224 (312)
T ss_pred EEEEc
Confidence 66653
No 33
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=84.25 E-value=13 Score=30.22 Aligned_cols=120 Identities=15% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC-CCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
++.++..++++...++||..|++. +..+. ...+.+.+..+..+...+...+. .....++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHHh
Confidence 577888999999999999999999 44431 22333444433333322222222 224555555543
Q ss_pred HHHHcCCCcccEEEeccCCC-----CCC----HHHHHHHHHHHHHcCCccEEEeCC---CCHHHHHHHH
Q 026625 118 SLRRLDVEYIDLYYQHRVDT-----SVP----IEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAH 174 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~-----~~~----~~~~~~~l~~l~~~G~ir~iGvSn---~~~~~l~~~~ 174 (235)
. ...|.+.+.++.--++.. ... ++.+.+..+..++.|....+++.. ++++.+.++.
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 3 456777666554322200 011 334555566666777777777744 3445444443
No 34
>PRK08392 hypothetical protein; Provisional
Probab=84.04 E-value=21 Score=28.79 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc---C-CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 44 GISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
..++++.|.+.|++.+=.+++.-.. ....+-..+++ . .+.++.|. .|... +..+.. .+..+..+
T Consensus 16 ~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i~il--~GiE~--------~~~~~~-~~~~~~~~ 83 (215)
T PRK08392 16 VRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEIVVL--AGIEA--------NITPNG-VDITDDFA 83 (215)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCceEE--EeEEe--------eecCCc-chhHHHHH
Confidence 5788999999999998666654210 11112222222 1 12233222 22111 011111 12233334
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-------C-HHHHHHHHh---cCCeeEEeeccCc
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PDTIRRAHA---VHPITAVQLEWSL 188 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-------~-~~~l~~~~~---~~~~~~~q~~~n~ 188 (235)
+. .||+ +..+|...........++.+.++.+.+.+.-+|=-.. . .+.++++++ .... ++.+ |-
T Consensus 84 ~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~-~lEi--Nt 157 (215)
T PRK08392 84 KK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGK-AFEI--SS 157 (215)
T ss_pred hh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCC-EEEE--eC
Confidence 43 3444 5566844333335677888888888887776664221 1 123333332 2221 2222 21
Q ss_pred ccccccchHHHHHHHhCCeEEe
Q 026625 189 WARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 189 ~~~~~~~~l~~~~~~~gi~v~a 210 (235)
..+.+...+++.|++.|+.++.
T Consensus 158 ~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 158 RYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred CCCCCCHHHHHHHHHcCCEEEE
Confidence 1222346799999999987763
No 35
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.46 E-value=8.2 Score=34.31 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 120 (235)
.-....++++|++.|++++|||...- ....+.+.. .+..+.+..-.|..+ ..+--.....+++-..
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a---~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEA---KKAGITAVLGCGFDP--------GITNVLAAYAAKELFD 143 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHH---HHcCeEEEcccCcCc--------chHHHHHHHHHHHhhc
Confidence 34456899999999999999998664 322222222 344555555555432 1222222222222222
Q ss_pred HcCCCcccEEEeccCCCC
Q 026625 121 RLDVEYIDLYYQHRVDTS 138 (235)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~ 138 (235)
.+++||+|..+.|+..
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5889999999998765
No 36
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=83.34 E-value=10 Score=31.35 Aligned_cols=110 Identities=23% Similarity=0.205 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHH-----------------Hhc--CCCCCEEEEeccccccCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA-----------------LKE--LPRENIQVATKFGFVELGF 99 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~a-----------------l~~--~~R~~~~I~tK~~~~~~~~ 99 (235)
.+.++..++.+.|-+.|+.+|=|...-. +-..+-+. |+. -....++|||=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s------ 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS------ 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT-------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC------
Confidence 5789999999999999999998875332 22222111 010 1344566666432
Q ss_pred cccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CHH-HHHHHHHHHHHcCCccEEEeCCCCHH
Q 026625 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIE-ETIGEMKKLVEEGKIKYIGLSEASPD 168 (235)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-~~~-~~~~~l~~l~~~G~ir~iGvSn~~~~ 168 (235)
+.+.|+++++...++-+ -++.++|+...+. +.+ --+..+..|++.=- --||.|.|+..
T Consensus 124 -------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 124 -------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred -------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 45667777765534433 6899999997653 232 35777777775522 56799999864
No 37
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=83.31 E-value=29 Score=29.92 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc-CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 118 (235)
+.++..+.+..+.+.|++.|=.-- +. ..+...=+++++ .+ ++.|.-=... ..+.+... .+ +.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~~--~~~l~vDaN~----------~~~~~~a~-~~-~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRFP--QIPLVIDANE----------SYDLQDFP-RL-KE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhCC--CCcEEEECCC----------CCCHHHHH-HH-HH
Confidence 446667777888899999874321 11 223333345555 32 3322222111 12344321 12 33
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-ch
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NE 196 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~ 196 (235)
|+. .++.++..|-. .+.++.+.++++.-.+. ..|=|.++..++..++....++++|+..+-.-.-.+ ..
T Consensus 195 l~~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 195 LDR-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred Hhh-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 333 35566665532 24567788888875554 556678899999999988888999988765432212 67
Q ss_pred HHHHHHHhCCeEEecccCccc
Q 026625 197 IVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 197 l~~~~~~~gi~v~a~spl~~G 217 (235)
+...|+++|+.++..+.+..|
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHcCCeEEEcceEccc
Confidence 899999999999876655544
No 38
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=83.29 E-value=33 Score=30.56 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCCCCCCCcHHHHHHHHHhc-CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
+.++..+.++.+.+ .|++.|=.-..-.+...+...=+++++ .+ ++.|..-... ..+++... +
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~--~~~l~vDaN~----------~w~~~~A~----~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFP--GARLRLDPNG----------AWSLETAI----R 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCC--CCcEEEeCCC----------CcCHHHHH----H
Confidence 55666677777775 699987543211110122222234444 42 3333332221 12333322 3
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-EN 195 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 195 (235)
.+++|. . ++.++..|-+ -++.+.+|++...+. ..|=|.++..++.++++...++++|+.....-.-. -.
T Consensus 232 ~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 334453 2 6666665532 477888888876655 55667788899999998888999998876543211 26
Q ss_pred hHHHHHHHhCCeEEecccC
Q 026625 196 EIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 196 ~l~~~~~~~gi~v~a~spl 214 (235)
++.+.|+++|+.+...+..
T Consensus 303 kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHcCCeEEEecCc
Confidence 8999999999999987754
No 39
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=82.56 E-value=33 Score=30.02 Aligned_cols=148 Identities=10% Similarity=0.066 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcC-CCeEeCCCCCCC-C-cH-HHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKG-ITFFDTADKYGP-Y-TN-EILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 42 ~~~~~~l~~A~~~G-i~~~DtA~~Yg~-g-~s-E~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
++..+.+..+++.| ++.|=.-- |. . .. .+.+ +++++.-.+++.|.-=... ..+.+...+ +-+
T Consensus 144 ~~~~~~~~~~~~~G~f~~~KiKv--g~~~~~~d~~~v-~avr~~~g~~~~l~iDaN~----------~~~~~~A~~-~~~ 209 (365)
T cd03318 144 ERDIAEAEEMLEAGRHRRFKLKM--GARPPADDLAHV-EAIAKALGDRASVRVDVNQ----------AWDESTAIR-ALP 209 (365)
T ss_pred HHHHHHHHHHHhCCCceEEEEEe--CCCChHHHHHHH-HHHHHHcCCCcEEEEECCC----------CCCHHHHHH-HHH
Confidence 44455667778889 88875421 11 1 11 2333 4555422233333322111 123333222 223
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-EN 195 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 195 (235)
.|+.+ ++.++..|-+. +.++.+.+|+++..+. ..|=|-++..++..+++...++++|+.....-.-. -.
T Consensus 210 ~l~~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~ 280 (365)
T cd03318 210 RLEAA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQ 280 (365)
T ss_pred HHHhc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHH
Confidence 34444 44556555332 3467888888876655 55666788899999998877888998765543211 26
Q ss_pred hHHHHHHHhCCeEEecc
Q 026625 196 EIVPLCRELGIGIVPYC 212 (235)
Q Consensus 196 ~l~~~~~~~gi~v~a~s 212 (235)
.+...|+++|+.++..+
T Consensus 281 ~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 281 KVAAIAEAAGIALYGGT 297 (365)
T ss_pred HHHHHHHHcCCceeecC
Confidence 78999999999988643
No 40
>PLN02363 phosphoribosylanthranilate isomerase
Probab=82.53 E-value=5.8 Score=33.17 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=44.5
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeecc
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~ 186 (235)
.++|.|++=+++...-......+.+ +.+.+......++.+||. |-+++.+.++.+..+++++|++-
T Consensus 64 ~~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HHcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 3689999999754432233444333 333333333246789995 88899999999989999999964
No 41
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=82.33 E-value=23 Score=32.71 Aligned_cols=134 Identities=12% Similarity=0.158 Sum_probs=74.5
Q ss_pred CCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC
Q 026625 65 YGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP 140 (235)
Q Consensus 65 Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~ 140 (235)
+| +++.+-++|++ .+.+-++|.+-.. ++-|-..++...+.++.+.++++.++.|.....
T Consensus 67 ~G---~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~ 129 (511)
T TIGR01278 67 RG---SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRK 129 (511)
T ss_pred cc---hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccc
Confidence 66 67777888877 2333455555432 333444455555555554688999999876543
Q ss_pred H-HHHHHHHHHHH--------------HcCCccEEEeCCC------CHHHHHHHHhcCCeeEEee-cc------------
Q 026625 141 I-EETIGEMKKLV--------------EEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQL-EW------------ 186 (235)
Q Consensus 141 ~-~~~~~~l~~l~--------------~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q~-~~------------ 186 (235)
. ...-.++++++ +.+.|.-||.++. +..++.++++...+.++.+ +.
T Consensus 130 ~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~ 209 (511)
T TIGR01278 130 ENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPA 209 (511)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhccc
Confidence 2 22223333332 2356888998863 3456777777766666543 32
Q ss_pred ---Ccccc-cccchHHHHHH-HhCCeEEecccCc
Q 026625 187 ---SLWAR-DIENEIVPLCR-ELGIGIVPYCPLG 215 (235)
Q Consensus 187 ---n~~~~-~~~~~l~~~~~-~~gi~v~a~spl~ 215 (235)
|+... .....+-++.+ +.|++++...|++
T Consensus 210 A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 210 AWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred CcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 22211 11123444443 4499998777775
No 42
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=81.53 E-value=36 Score=29.81 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
+.++..+.+..+.+.|++.|=.=- .+.+ +++++.-.+++.|.--... ..+.+... +-+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN~----------~w~~~~A~----~~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVHH----------RLTPNQAA----RFG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECCC----------CCCHHHHH----HHH
Confidence 445666777778889999885311 2222 3444422234433322211 12343322 222
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chH
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEI 197 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l 197 (235)
+.|. .+++.++..|-+. +-++.+.+|++...+. ..|=|-++..++..++....++++|+...-.-.-.+ ..+
T Consensus 184 ~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3332 2466667766432 3477888888887665 667778899999999988888999998765432112 678
Q ss_pred HHHHHHhCCeEEecc
Q 026625 198 VPLCRELGIGIVPYC 212 (235)
Q Consensus 198 ~~~~~~~gi~v~a~s 212 (235)
.+.|+++|+.+...+
T Consensus 258 a~~A~~~gi~~~~h~ 272 (361)
T cd03322 258 ADLASLYGVRTGWHG 272 (361)
T ss_pred HHHHHHcCCeeeccC
Confidence 999999999998654
No 43
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.19 E-value=36 Score=29.64 Aligned_cols=153 Identities=12% Similarity=0.111 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC--------cHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPY--------TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--------~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
+.++..+.+..+.+.|++.|=.--....+ ..+...=+++++.-.+++.|..=... ..+.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHH-
Confidence 44556677777889999988653221100 12233334555422223333332211 123332
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccc
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (235)
..+-++.|. ..++.++..|-.. +-++.+.+|++..-+. ..|=|.++..++..+++...++++|+.....-
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~----~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLP----ENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCc----cCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 223333442 2455666655432 3477888888876555 44556788999999988777889999865443
Q ss_pred ccc-cchHHHHHHHhCCeEEecc
Q 026625 191 RDI-ENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 191 ~~~-~~~l~~~~~~~gi~v~a~s 212 (235)
.-. -..+.+.|+++|+.++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 211 2689999999999998665
No 44
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.87 E-value=33 Score=28.97 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCCCCCcHHHHHHHHHhcCCCC-CEEEEeccccccCCCcccccCCCH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTP 108 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~ 108 (235)
+.++..++.+.+.+.|+..||.- ..|+ .+.+.+-+.++.+.+. ++-|.-|+.+..
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------ 165 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV------------ 165 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc------------
Confidence 56788888889999999998872 1232 3556666666653322 678888886432
Q ss_pred HHHHHHHHHHHHHcCCCcccEEE------eccCC--C-----------CCCHHHHHHHHHHHHHcCCccEEEeCCC-CHH
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYY------QHRVD--T-----------SVPIEETIGEMKKLVEEGKIKYIGLSEA-SPD 168 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~------lh~~~--~-----------~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~ 168 (235)
+.+. .+-+.++..|.|.|++.- +|... + .....-.++.+.++++.=.+.-||+... +++
T Consensus 166 ~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 166 TDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred hhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 1222 223456778887776531 11100 0 0001135677777777656888888874 788
Q ss_pred HHHHHHhcCCeeEEeeccCcccc-----cccchHHHHHHHhCC
Q 026625 169 TIRRAHAVHPITAVQLEWSLWAR-----DIENEIVPLCRELGI 206 (235)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~n~~~~-----~~~~~l~~~~~~~gi 206 (235)
++.+++... .+.+|+-=.++.. ....++-++.+++|.
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 999988754 6888875333331 112556667777764
No 45
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=78.88 E-value=16 Score=34.61 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=54.7
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeeccCcccccccchHH
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWSLWARDIENEIV 198 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~ 198 (235)
..+|.|++=+++..........+.....+.+....-.++.+||. |-+++.+.++.+...++++|++-+.-. .....+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e~~--~~~~~~ 97 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAESK--AEPAYC 97 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCc--ccHHHH
Confidence 46899999998655444445555523333333332357789995 888999999999899999999753210 012344
Q ss_pred HHHHHhCCeEE
Q 026625 199 PLCRELGIGIV 209 (235)
Q Consensus 199 ~~~~~~gi~v~ 209 (235)
+..++.++.++
T Consensus 98 ~~l~~~~~~ii 108 (610)
T PRK13803 98 QRIYKKSIKKI 108 (610)
T ss_pred HHhhhcCCcEE
Confidence 44444455544
No 46
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=78.72 E-value=43 Score=29.04 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCC----------------C--cHHHHHHHHHhcCCCCCEEEEeccccccCCCc
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGP----------------Y--TNEILLGKALKELPRENIQVATKFGFVELGFT 100 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----------------g--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~ 100 (235)
.+.+...++.+.|-+.|+-+|-|-..+.. | ....++....+ ..+.+++||=..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 57788889999999999999876644431 0 01122222222 234667776432
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHH-HHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 026625 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (235)
Q Consensus 101 ~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 174 (235)
+-+.+.++++...+ -|. .|+.++|+...+ .+.++ -+..|..|.+.= ---||+|.|+..-+..+.
T Consensus 158 ------~~~ei~~av~~~r~-~g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 158 ------TIEEIEEAVAILRE-NGN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred ------cHHHHHHHHHHHHh-cCC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 35667777765444 443 399999998765 33433 355666665553 456999999977544443
No 47
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.27 E-value=46 Score=29.05 Aligned_cols=152 Identities=9% Similarity=0.055 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 120 (235)
.++..+.+..+.+.|++.|=.=-...+-..+...=+++++.-.+++.|..-... ..+.+...+-+ +.|+
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~-~~l~ 210 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERG-QALD 210 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHH-HHHH
Confidence 455566667777889886643211111012333344565522334444433221 13444333222 2334
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chHH
Q 026625 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIV 198 (235)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~ 198 (235)
.+ ++.++..|-.. +-++.+.+|++.--|. ..|=+.++..++.++++...++++|+..+-.-.-.+ .++.
T Consensus 211 ~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia 281 (355)
T cd03321 211 QE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRAS 281 (355)
T ss_pred cC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHH
Confidence 44 45556655432 3467777777764433 445566889999999988888999987765432112 5789
Q ss_pred HHHHHhCCeEEecc
Q 026625 199 PLCRELGIGIVPYC 212 (235)
Q Consensus 199 ~~~~~~gi~v~a~s 212 (235)
+.|+.+|+.++...
T Consensus 282 ~~A~~~gi~~~~h~ 295 (355)
T cd03321 282 ALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHcCCeecccc
Confidence 99999999987543
No 48
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.11 E-value=12 Score=31.83 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeec
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~ 185 (235)
++.+...+ +-+.|.++|+++|++-.++.|.......+.++.+..+.+...++...+. .+...++.+.+. .++.+.+-
T Consensus 23 ~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~-g~~~v~i~ 99 (287)
T PRK05692 23 IPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA-GADEVAVF 99 (287)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc-CCCEEEEE
Confidence 44554444 5567999999999997555554333333456777777655456666654 578888888875 22333333
Q ss_pred cCc--c------cccc------cchHHHHHHHhCCeEEe
Q 026625 186 WSL--W------ARDI------ENEIVPLCRELGIGIVP 210 (235)
Q Consensus 186 ~n~--~------~~~~------~~~l~~~~~~~gi~v~a 210 (235)
.+. . .... -...+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222 1 1111 14689999999998863
No 49
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=77.73 E-value=3.8 Score=29.16 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchHHHHHHHhCCeEEeccc
Q 026625 163 SEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 163 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~sp 213 (235)
|.++..++.++++...++++|+...-.-.-. -..+.+.|+++|+.+...+.
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 4577888999999888899998755432211 26789999999999998886
No 50
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=77.48 E-value=20 Score=31.61 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC------------CC-HH---HHH-HHHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------------VP-IE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~------------~~-~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++..+ .|+.++|.+|.+.-.+.. .+ .+ +.+ .+.+.|.+.|. ..+++|||..
T Consensus 167 qt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 46777888887655 488999999888632110 01 11 222 34455677787 4588999864
No 51
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=77.35 E-value=18 Score=32.30 Aligned_cols=59 Identities=17% Similarity=0.051 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-------------CCHH---HHH-HHHHHHHHcCCccEEEeCCCCH
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-------------~~~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
+.+.+.+.++..+ +|+.++|.+|.+.-.+.. ...+ +.+ .+.+.|.+.|.. .+++|||..
T Consensus 180 t~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 180 TLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 4555555555433 366677777666422110 0111 122 244556667764 578888763
No 52
>PRK07945 hypothetical protein; Provisional
Probab=77.20 E-value=49 Score=28.79 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCC-----CcHHHHHHHHHhc---C---CCC-CEEEEeccccccCCCcccccCCCHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKE---L---PRE-NIQVATKFGFVELGFTSVIVKGTPE 109 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~sE~~lG~al~~---~---~R~-~~~I~tK~~~~~~~~~~~~~~~~~~ 109 (235)
....+++++|++.|+..+=.+++... +.+...+-+.++. . -++ ++.+.--+.... +...+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~~~--------~g~~~ 182 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDILD--------DGSLD 182 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecccC--------CCCcc
Confidence 33678999999999998866655321 1122222222222 1 112 222222222111 11122
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC---------------CCHHHHHHHH
Q 026625 110 YVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------------ASPDTIRRAH 174 (235)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---------------~~~~~l~~~~ 174 (235)
.. ++.|+. .||+ +..+|+... .+..+..+.+.+..+.+.+..+|=-. +..+.+.+++
T Consensus 183 ~~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~ 254 (335)
T PRK07945 183 QE----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAAC 254 (335)
T ss_pred hh----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHH
Confidence 22 223333 4554 566787643 23456778888888888888777321 2223333333
Q ss_pred hcCCeeEEeeccCcccccccchHHHHHHHhCCeEEe
Q 026625 175 AVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 175 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
..... .+.++-+.+...+...+++.|++.|+.++.
T Consensus 255 ~e~g~-~lEINt~~~r~~P~~~il~~a~e~G~~vti 289 (335)
T PRK07945 255 REHGT-AVEINSRPERRDPPTRLLRLALDAGCLFSI 289 (335)
T ss_pred HHhCC-EEEEeCCCCCCCChHHHHHHHHHcCCeEEe
Confidence 33221 333333443333447899999999998753
No 53
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=77.20 E-value=17 Score=32.61 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=61.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHc------CCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chHHHH
Q 026625 128 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPL 200 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~ 200 (235)
++ ++..|-+..+.++.++.+.+|++. ..=-..+=|.++.+++.++++..-.+++|+..+-+-.-.+ .++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777775443334567888888765 3333445577889999999988888999998765433222 689999
Q ss_pred HHHhCCeEEecccC
Q 026625 201 CRELGIGIVPYCPL 214 (235)
Q Consensus 201 ~~~~gi~v~a~spl 214 (235)
|+++||.+...+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999986654
No 54
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=76.70 E-value=44 Score=28.05 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHH--HHHhc-CCCC-CEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLG--KALKE-LPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG--~al~~-~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
+...+.++..-+.|..+|..++.=+.+..+..+. +.|++ ..-+ =..++.. +.++..+...+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-------------~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-------------GATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-------------CCCHHHHHHHHHH
Confidence 5566666666688999999997666444444443 33331 1111 1222222 2356667766653
Q ss_pred HHHHcCCCcccEEEeccCCC-------CCCHHHHHHHHHHHHHc-CCccEEEeCCCC--------H-HHHHHHHhc----
Q 026625 118 SLRRLDVEYIDLYYQHRVDT-------SVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------P-DTIRRAHAV---- 176 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~-------~~~~~~~~~~l~~l~~~-G~ir~iGvSn~~--------~-~~l~~~~~~---- 176 (235)
+..+|++ +++.|-...+ ...+..+.+-++.+++. +. -+||+..++ . ++++.+.+.
T Consensus 82 -~~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aG 157 (272)
T TIGR00676 82 -YRELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKVDAG 157 (272)
T ss_pred -HHHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3777754 3343432211 12233455555555554 43 477876542 1 344544433
Q ss_pred CCeeEEeeccCcccccccchHHHHHHHhCCeE
Q 026625 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGI 208 (235)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 208 (235)
..+-+-|.-|+.-. -..+++.|++.|+.+
T Consensus 158 A~f~iTQ~~fd~~~---~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 158 ADYAITQLFFDNDD---YYRFVDRCRAAGIDV 186 (272)
T ss_pred CCeEeeccccCHHH---HHHHHHHHHHcCCCC
Confidence 34666677665422 257888999998764
No 55
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=45 Score=27.97 Aligned_cols=109 Identities=8% Similarity=-0.064 Sum_probs=63.4
Q ss_pred cceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCC-CCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcc
Q 026625 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTAD-KYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTS 101 (235)
Q Consensus 23 ~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~ 101 (235)
.||+++|......+.-.++....+-.-..+....|.+..-. .|.. .+++.+-+|.+ ...+++..+-|+...-..
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~-~~p~~FrFsvK~~~~iTH--- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAE-ETPDDFRFSVKAPRAITH--- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHH-hCCCCeEEEEEecccccc---
Confidence 46777776654222222332222333344555677665433 4543 46777777877 578999999999754421
Q ss_pred cccCCC--HHHHHHHHHHHHHHcCCCcccEEEeccCCCC
Q 026625 102 VIVKGT--PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (235)
Q Consensus 102 ~~~~~~--~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~ 138 (235)
..... -..+.+.+.+.++.|| +++..++++-|..-
T Consensus 79 -~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 79 -QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred -hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 11111 1344445555566777 58999999999764
No 56
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=75.87 E-value=55 Score=30.32 Aligned_cols=89 Identities=13% Similarity=0.229 Sum_probs=51.1
Q ss_pred ccEEEeccCCCCCC-HHHHHHHHHHHH------------------HcCCccEEEeCC------CCHHHHHHHHhcCCeeE
Q 026625 127 IDLYYQHRVDTSVP-IEETIGEMKKLV------------------EEGKIKYIGLSE------ASPDTIRRAHAVHPITA 181 (235)
Q Consensus 127 iDl~~lh~~~~~~~-~~~~~~~l~~l~------------------~~G~ir~iGvSn------~~~~~l~~~~~~~~~~~ 181 (235)
++++.+|.|..... ....-.++++++ ..++|.-||.++ .+...+.++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 68999999966532 222222333333 235688998774 34567777777766655
Q ss_pred Eeec----------------cCcccc-cccchHHHHHH-HhCCeEEecccCc
Q 026625 182 VQLE----------------WSLWAR-DIENEIVPLCR-ELGIGIVPYCPLG 215 (235)
Q Consensus 182 ~q~~----------------~n~~~~-~~~~~l~~~~~-~~gi~v~a~spl~ 215 (235)
+.+- +|+... .....+.++.+ +.|++++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 5221 233221 11134555555 4599998878875
No 57
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=75.86 E-value=51 Score=28.33 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc---C-CCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.+.+++.++++.+.+.|++.|.-.. |......-+-+.++. . .-.++.|+|-... +.+.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~~~~~i~itTNG~l----------------l~~~ 110 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALPGIRDLALTTNGYL----------------LARR 110 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcCCCceEEEEcCchh----------------HHHH
Confidence 5788999999999999998776432 211111112233332 2 1235666665321 1111
Q ss_pred HHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC----ccEEEeCCCCHHHHHHHHhc---CCe
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV---HPI 179 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~---~~~ 179 (235)
+ ..|...|++.+- +-+|..++ ...++.++++++.+++.|. |..+.+...+.+++.++.+. .++
T Consensus 111 ~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 A-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred H-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2 234444554432 34444432 1347889999999999885 33444445565666655543 445
Q ss_pred eEEeeccCccccc---------ccchHHHHHHHhCCeEEe
Q 026625 180 TAVQLEWSLWARD---------IENEIVPLCRELGIGIVP 210 (235)
Q Consensus 180 ~~~q~~~n~~~~~---------~~~~l~~~~~~~gi~v~a 210 (235)
.+.-++|.++... ...++++.++++|+.+..
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 5555555543321 114678888888765443
No 58
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=75.73 E-value=39 Score=31.05 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCCccE----EEeCCCCHHHHHHHHhc---CCeeEEeeccCcccccccchHHHHHHHhCC
Q 026625 139 VPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQLEWSLWARDIENEIVPLCRELGI 206 (235)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 206 (235)
...++..++++.+++.|.... +|+-+.+.+.+++.++. .+++ ++.++.+...+...+.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 456788899999999986433 46667777777666543 3444 344466666556788888888764
No 59
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=75.41 E-value=37 Score=30.57 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred eCCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCC-cccEEEecc
Q 026625 60 DTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE-YIDLYYQHR 134 (235)
Q Consensus 60 DtA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~-~iDl~~lh~ 134 (235)
+..-.|| .|+.|-++|++ .+.+=++|.|-.-..- .-+.+...+++.-++.... .+.++.++.
T Consensus 62 E~d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~t 128 (435)
T cd01974 62 EDAAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANT 128 (435)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecC
Confidence 3445777 67788888887 3344466666543211 1222333333322333111 478899998
Q ss_pred CCCCCC----HHHHHHHHHH-HHH-------cCCccEEEeCC--CC-HHHHHHHHhcCCeeEEe
Q 026625 135 VDTSVP----IEETIGEMKK-LVE-------EGKIKYIGLSE--AS-PDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 135 ~~~~~~----~~~~~~~l~~-l~~-------~G~ir~iGvSn--~~-~~~l~~~~~~~~~~~~q 183 (235)
|..... .+.++++|-+ +.. .+.|.-||-.+ .+ .+++.++++...+.++.
T Consensus 129 pgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 129 PSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 865432 2334444432 222 23466665222 22 57888888876666554
No 60
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=74.90 E-value=30 Score=31.14 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-----------CC-H---HHHHHHHHH-HHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-----------VP-I---EETIGEMKK-LVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-----------~~-~---~~~~~~l~~-l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++..+ .|+.|+|.+|.+-..+.. .+ . .+.++...+ |.+.|. +.+|+|||..
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 35566666665544 567899999988433110 11 1 234554444 455666 9999999986
No 61
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=74.87 E-value=45 Score=27.57 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=53.0
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCeeEEeeccCcccccc-
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDI- 193 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 193 (235)
+-++.+|. |.+.+|..+...... -.++.+.++++.-.+.-|.... .+.+++.++++....+.+.+---+.....
T Consensus 162 ~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 34456664 667777654432111 1355666666665566665543 45788888888765666555322222222
Q ss_pred cchHHHHHHHhCCeE
Q 026625 194 ENEIVPLCRELGIGI 208 (235)
Q Consensus 194 ~~~l~~~~~~~gi~v 208 (235)
..++.+.|+++||.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 267899999999875
No 62
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.62 E-value=32 Score=28.62 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CCccEEEeC---CCCHHHHHHHHhc
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAHAV 176 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvS---n~~~~~l~~~~~~ 176 (235)
++.+...+ +-+.|.++|+++|++-+...... .......++.++.+++. +.++...++ ..+.+.++.+.+.
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 44555554 44569999999999975432110 01112356666666443 446666664 3345667776654
Q ss_pred CCeeEEeeccCcccccccchHHHHHHHhCCeEEec
Q 026625 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (235)
.++.+.+.++.-+...-.+.+++++++|..+...
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4556665444333222367889999999876543
No 63
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=74.61 E-value=11 Score=34.28 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=44.7
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeeccC
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n 187 (235)
...+|.|++=+++...-......+.+-+....+. ++.+||. |-+++.+.++.+...++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4568889888874433223344444333333332 8899996 788999999998899999999764
No 64
>PRK13796 GTPase YqeH; Provisional
Probab=73.96 E-value=62 Score=28.46 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKG---ITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
.+.++..++++..-+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|.-.... ....+.+.+-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHHH
Confidence 56777778877776555 45678766443 22334444332 4566889999865321 12345566666
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 026625 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (235)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 170 (235)
+...+.+|....|++.+..-. ...++++++.+.++.+.+.+-.+|.+|..-..+
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 666677776555777765433 356788899988887778899999999876543
No 65
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.31 E-value=24 Score=28.73 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCc---HHHHHHHHHhc
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYT---NEILLGKALKE 80 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~---sE~~lG~al~~ 80 (235)
+.+.++..++++.|.+.|++-+=..++|-.|+ ++..+.+.+.+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 34889999999999999999776666665553 44555555443
No 66
>PRK05660 HemN family oxidoreductase; Provisional
Probab=73.29 E-value=29 Score=30.63 Aligned_cols=27 Identities=11% Similarity=0.061 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEec
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh 133 (235)
.+.+.+.+.++..+ .++.++|.+|.+-
T Consensus 171 qt~~~~~~~l~~~~-~l~p~~is~y~l~ 197 (378)
T PRK05660 171 QSLEEALDDLRQAI-ALNPPHLSWYQLT 197 (378)
T ss_pred CCHHHHHHHHHHHH-hcCCCeEEeeccE
Confidence 34566666665443 3777777776664
No 67
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=73.08 E-value=64 Score=28.24 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=59.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchHHHHHHHh
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPLCREL 204 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~ 204 (235)
.++.++..|-+. +.++.+.+|++...+. ..|=|-++..++.+++....++++|+...-.-.-. -..+...|+.+
T Consensus 213 ~~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~ 288 (368)
T TIGR02534 213 AGVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAA 288 (368)
T ss_pred cChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHc
Confidence 345556655432 3467777788776655 66778889999999988888889998766533211 16788999999
Q ss_pred CCeEEecccC
Q 026625 205 GIGIVPYCPL 214 (235)
Q Consensus 205 gi~v~a~spl 214 (235)
|+.++..+.+
T Consensus 289 gi~~~~~~~~ 298 (368)
T TIGR02534 289 GIALYGGTML 298 (368)
T ss_pred CCceeeecch
Confidence 9999876443
No 68
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.73 E-value=48 Score=29.30 Aligned_cols=85 Identities=18% Similarity=0.048 Sum_probs=59.3
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chHHHHH
Q 026625 129 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLC 201 (235)
Q Consensus 129 l~~lh~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~ 201 (235)
++++..|-+..+..+.++.+.+|.+. +.=-..|=|.++...+.++++....+++|+..+-.-.-.+ ..+.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35666664433322457777777766 3334456677889999999988888999998775433222 6789999
Q ss_pred HHhCCeEEeccc
Q 026625 202 RELGIGIVPYCP 213 (235)
Q Consensus 202 ~~~gi~v~a~sp 213 (235)
+.+|+.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999997543
No 69
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=71.19 E-value=38 Score=30.71 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-------------C-CHHH---HH-HHHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------V-PIEE---TI-GEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-------------~-~~~~---~~-~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+++.++..+ .|+.++|++|.+.-.+.. . ..++ .+ .+.+.|.+.|. +.+++|||..
T Consensus 227 qT~e~~~~~l~~~~-~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far 304 (449)
T PRK09058 227 QTPEIWQQDLAIVR-DLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWAR 304 (449)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeec
Confidence 46777888776655 489999999988643210 0 1111 22 33445666676 4578888764
No 70
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=71.12 E-value=34 Score=30.53 Aligned_cols=83 Identities=8% Similarity=0.002 Sum_probs=59.8
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchHHHHHHHh
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPLCREL 204 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~ 204 (235)
.++.++..|-+. +.++.+.+|++.-.|. ..|=|-++...++++++..-++++|+...-.-.-. -..+.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 456666655332 3467788888876555 55667789999999999888899998766543211 26789999999
Q ss_pred CCeEEeccc
Q 026625 205 GIGIVPYCP 213 (235)
Q Consensus 205 gi~v~a~sp 213 (235)
|+.++.++.
T Consensus 308 gi~~~~h~~ 316 (404)
T PRK15072 308 QVRTGSHGP 316 (404)
T ss_pred CCceeeccC
Confidence 999987643
No 71
>PLN02428 lipoic acid synthase
Probab=71.10 E-value=70 Score=28.08 Aligned_cols=158 Identities=14% Similarity=0.223 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC----CCCCCCcHHHHHHHHHhcCCC--CCEEEEeccccccCCCcccccCCCHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTA----DKYGPYTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i~ 112 (235)
.+.++..++.+.+.+.|++++=.. +.|-++..+ .+.+.++.+.+ ..+.|..= .+.. ..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L-~pdf--------~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEAL-VPDF--------RGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEe-Cccc--------cCC-----
Confidence 456777788888888898765332 123333344 33444444222 12333321 1100 011
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHc--CCccE----EEeCCCCHHHHHHHHh
Q 026625 113 SCCEASLRRLDVEYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIKY----IGLSEASPDTIRRAHA 175 (235)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~--G~ir~----iGvSn~~~~~l~~~~~ 175 (235)
++.|+.|.-.-+|. +-|+++. ....++.++.++.+++. |..-. +|+ .-+.+++.+.+.
T Consensus 195 ---~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 22333332233566 3466654 12467788999998887 76532 466 456666666554
Q ss_pred c---CCeeEEee-cc----------Cccccccc-chHHHHHHHhCCeEEecccCcc
Q 026625 176 V---HPITAVQL-EW----------SLWARDIE-NEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 176 ~---~~~~~~q~-~~----------n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~ 216 (235)
. .+++.+.+ +| +-+-...+ +.+-+++.+.|...++..||-+
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 3 44444443 33 21222111 5677888899999999999864
No 72
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=71.07 E-value=68 Score=29.72 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred HHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC----H
Q 026625 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP----I 141 (235)
Q Consensus 70 sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~----~ 141 (235)
+|+.+-+++++ .+.+-++|.|-.. ++-|-..++...+.++. .++++.++.|..... .
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC~--------------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~ 133 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSCT--------------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAA 133 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCcH--------------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHH
Confidence 56666777776 2233345555432 33344444444455554 367999999866533 2
Q ss_pred HHHHHHHHH-HH-----------HcCCccEEEeCCC------CHHHHHHHHhcCCeeEEeec----------------cC
Q 026625 142 EETIGEMKK-LV-----------EEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQLE----------------WS 187 (235)
Q Consensus 142 ~~~~~~l~~-l~-----------~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q~~----------------~n 187 (235)
+.+++++-+ +. +.+.|.-||.++. +..++.++++...+.++.+. +|
T Consensus 134 ~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~n 213 (519)
T PRK02910 134 DETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFN 213 (519)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEE
Confidence 223333222 21 1245888888652 34567777777666665542 22
Q ss_pred ccccc-ccchHHHHHH-HhCCeEEecccCc
Q 026625 188 LWARD-IENEIVPLCR-ELGIGIVPYCPLG 215 (235)
Q Consensus 188 ~~~~~-~~~~l~~~~~-~~gi~v~a~spl~ 215 (235)
+.... ....+-++.+ +.|++++...|++
T Consensus 214 ivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 214 VVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred EEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 22111 1123444444 5589988777764
No 73
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.55 E-value=38 Score=28.36 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCCccEEEeCCCC---HHHHHHHHh
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHA 175 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~ 175 (235)
.++.+...+ +-+.|.++|+++|++=+........ .-.+.++.+.++.+ +..+..+++... .+.+..+.+
T Consensus 16 ~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 356665554 5566999999999997665432110 11355666665543 346666666544 455555544
Q ss_pred cCCeeEEeeccCcccccccchHHHHHHHhCCeEEec
Q 026625 176 VHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 176 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (235)
. .++.+.+.+..-.-..-.+.+++++++|+.|...
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 3445444433222211267888999999876643
No 74
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=70.37 E-value=75 Score=27.86 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC--cHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPY--TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
+.++..+.++.+.+.|++.|=.- .++.. ......=+++++.-.+++.|.--... ..+.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~----------~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGAH----------WYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECCC----------CcCHHHHHH-HHH
Confidence 55677788888999999988652 22211 11122223444411123333221111 123332222 222
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccE-EEeCCCC-HHHHHHHHhcCCeeEEeeccCcccccc-c
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEAS-PDTIRRAHAVHPITAVQLEWSLWARDI-E 194 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvSn~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~-~ 194 (235)
.|+.+ ++.++..|-+ . +-++.+.+|+++-.|.- .|=+-++ ..++.++++...++++|+..+..-.-. -
T Consensus 211 ~l~~~-----~l~~iEeP~~---~-~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEEL-----GFFWYEDPLR---E-ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhhc-----CCCeEeCCCC---c-hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 33443 4445554432 2 23577778888755552 2334466 888999988888899999876543211 2
Q ss_pred chHHHHHHHhCCeEEecc
Q 026625 195 NEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a~s 212 (235)
..+...|+++|+.+...+
T Consensus 282 ~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 282 MKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 678999999999997543
No 75
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=70.36 E-value=80 Score=28.18 Aligned_cols=152 Identities=16% Similarity=0.270 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC----cHHHHHHHHHhc-----CCCCCEEEEeccccccCCCcccccCCCHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPY----TNEILLGKALKE-----LPRENIQVATKFGFVELGFTSVIVKGTPEY 110 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g----~sE~~lG~al~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~ 110 (235)
+..++.+++..|++.|- ...|++. .+-+.+.+.+.+ +..++++|++-.. .
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~---------------q- 137 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS---------------Q- 137 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccch---------------H-
Confidence 45677888888888873 3456553 467777777665 5678999987532 2
Q ss_pred HHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC---C--CHHHHHHHHhcCCee-EEee
Q 026625 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A--SPDTIRRAHAVHPIT-AVQL 184 (235)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---~--~~~~l~~~~~~~~~~-~~q~ 184 (235)
+++-.++.|-...-.++ |-+|. .++-.+......| -||++-+-. | +.++++.++....+. ++-+
T Consensus 138 ---AIe~~i~~LA~p~aNIL-lPrPG--fp~Y~~~a~~~~l----EVR~ydlLPe~~weIDL~~veal~DENT~AivviN 207 (447)
T KOG0259|consen 138 ---AIELAISSLANPGANIL-LPRPG--FPLYDTRAIYSGL----EVRYYDLLPEKDWEIDLDGVEALADENTVAIVVIN 207 (447)
T ss_pred ---HHHHHHHHhcCCCCcee-cCCCC--CchHHHhhhhcCc----eeEeecccCcccceechHHHHHhhccCeeEEEEeC
Confidence 33334444433333443 33343 2332332222222 366665532 2 346677777654433 3333
Q ss_pred ccCc----ccccccchHHHHHHHhCCeEEecccCccccCCCC
Q 026625 185 EWSL----WARDIENEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (235)
Q Consensus 185 ~~n~----~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 222 (235)
+.|+ +...+.+++++.|+++||-||+=...+.=.+.++
T Consensus 208 P~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~ 249 (447)
T KOG0259|consen 208 PNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK 249 (447)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC
Confidence 4433 3334458899999999999998766654443333
No 76
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=70.00 E-value=57 Score=26.36 Aligned_cols=144 Identities=12% Similarity=-0.022 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
|++++.++++.|++.|+...|+- +..+-.++++ +.+.+++++-=. .+.+.+++.+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe~-------------~as~~~~~~l 71 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQVL-------------KSARVMKAAV 71 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHHH-------------HHHHHHHHHH
Confidence 78899999999999987655432 2333334433 345555554321 1234455555
Q ss_pred HHH---HHHcCC---CcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEEeeccCc
Q 026625 116 EAS---LRRLDV---EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSL 188 (235)
Q Consensus 116 ~~s---L~~Lg~---~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~ 188 (235)
... +..... +.- -+++-.+..+.+--...=.-.-|+..|. |-++|. +.+++.+.+.....+++++.+.+.+
T Consensus 72 ~~l~~~l~~~~~~~~~~~-~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~-~vp~e~~v~~~~~~~~~~V~lS~~~ 149 (213)
T cd02069 72 AYLEPYMEKEKGENSSKG-KIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGV-MVPIEKILEAAKEHKADIIGLSGLL 149 (213)
T ss_pred HHHHHHHhhccccCCCCC-eEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEccch
Confidence 544 222221 122 2344444333221122222223556774 777775 4556777777777788888887665
Q ss_pred cccccc-chHHHHHHHhCC
Q 026625 189 WARDIE-NEIVPLCRELGI 206 (235)
Q Consensus 189 ~~~~~~-~~l~~~~~~~gi 206 (235)
...-.. .++++.+++.+.
T Consensus 150 ~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred hccHHHHHHHHHHHHhcCC
Confidence 544322 678888888865
No 77
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=69.86 E-value=74 Score=27.59 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC--C----cHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGP--Y----TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g----~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
+.++..+.++.+++.|++.|=.--..+. + ......=+++++.-.+++-|.-=... ..+++...+
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~----------~~~~~~A~~ 189 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYM----------SWNLNYAIK 189 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCC----------CCCHHHHHH
Confidence 4566667778888999998754321111 1 01112223444311122222221111 123333222
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccccc
Q 026625 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD 192 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~ 192 (235)
+-+.|+. +++.++..|-+. +-++.+.+|++...|. ..|=|.++..++.++++...++++|+..+-.-.-
T Consensus 190 -~~~~l~~-----~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGi 259 (341)
T cd03327 190 -MARALEK-----YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGI 259 (341)
T ss_pred -HHHHhhh-----cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCH
Confidence 2223333 355566655432 3467777888876666 5555778899999999888889999886654321
Q ss_pred cc-chHHHHHHHhCCeEEecc
Q 026625 193 IE-NEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 193 ~~-~~l~~~~~~~gi~v~a~s 212 (235)
.+ ..+.+.|+++|+.+...+
T Consensus 260 t~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 260 TELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHcCCeecccc
Confidence 12 678999999999987663
No 78
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=69.80 E-value=32 Score=25.89 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 026625 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (235)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (235)
+|=.+.|+-|++.. ..+..+.+.++++++... +...|++++.......++.++...|.++.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 46678888887642 347778888888887663 3578999999887766777777777766654
No 79
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=69.58 E-value=41 Score=27.81 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=82.0
Q ss_pred cCcceeccccCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCC
Q 026625 21 VSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGF 99 (235)
Q Consensus 21 vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~ 99 (235)
-|++-+||..+.+ .+++..|++ +|...+=+|----+-.....-...+..++++.+.+--....
T Consensus 8 ~SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaG----- 71 (247)
T PF05690_consen 8 RSRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAG----- 71 (247)
T ss_dssp S-SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-----
T ss_pred ecceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCC-----
Confidence 3688899876432 355566664 47666544421110000000011223255666655444332
Q ss_pred cccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCC
Q 026625 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHP 178 (235)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 178 (235)
..+.+.-.+..+-+.+.++++.|-+=.+..+... .+..+++++-+.|+++|-+- +=-++-++-..+++.+ ..
T Consensus 72 -----c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d-~G 144 (247)
T PF05690_consen 72 -----CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLED-AG 144 (247)
T ss_dssp ------SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHH-TT
T ss_pred -----CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHH-CC
Confidence 2356666667777888889888777655544332 45679999999999999643 3334445544444444 33
Q ss_pred eeEEeeccCcccccc---c-chHHHHHHHhCCeEEe
Q 026625 179 ITAVQLEWSLWARDI---E-NEIVPLCRELGIGIVP 210 (235)
Q Consensus 179 ~~~~q~~~n~~~~~~---~-~~l~~~~~~~gi~v~a 210 (235)
..+++.--+++-... . ..+-..+.+.+|.|+.
T Consensus 145 caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIv 180 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIV 180 (247)
T ss_dssp -SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEE
T ss_pred CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEE
Confidence 444554444433211 1 2233344566888776
No 80
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=69.51 E-value=76 Score=27.64 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccC-CCC--------CCHHHHH-HHHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRV-DTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~-~~~--------~~~~~~~-~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++.. .+++.+++.+|.+.-. ... ..-++.+ .+.+.|.+.|. ..+++|||..
T Consensus 162 qt~~~~~~~l~~~-~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLA-KELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 4566777777554 3588888888777532 110 1112333 34455666686 4688988874
No 81
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=69.44 E-value=39 Score=27.35 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCC-CcHH---HHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGP-YTNE---ILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~sE---~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.++++...+.+.|.++|..|+=|+..|+. |-+. +.+.+.++ +. +-.|...-. .+.+...+-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGGi---------rt~~~a~~~ 193 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGGV---------RTAEDAIAM 193 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCCC---------CCHHHHHHH
Confidence 35678889999999999999999988863 3222 33344433 11 333432211 156777888
Q ss_pred HHHHHHHcCCCc
Q 026625 115 CEASLRRLDVEY 126 (235)
Q Consensus 115 ~~~sL~~Lg~~~ 126 (235)
++.--.|+|+++
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 888889999875
No 82
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=69.22 E-value=43 Score=29.37 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeec
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~ 185 (235)
++.+.-. .+-+.|.++|+++|++-..-+|.......+.-+.++.+++...++..+++ .+...++.+++.. .+.+.+.
T Consensus 65 ~s~e~Ki-~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~-~n~~die~A~~~g-~~~v~i~ 141 (347)
T PLN02746 65 VPTSVKV-ELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLT-PNLKGFEAAIAAG-AKEVAVF 141 (347)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEc-CCHHHHHHHHHcC-cCEEEEE
Confidence 4444333 45567999999999987554553222222333333444443335555554 5888999988762 2233333
Q ss_pred cCc--c------ccccc------chHHHHHHHhCCeEE
Q 026625 186 WSL--W------ARDIE------NEIVPLCRELGIGIV 209 (235)
Q Consensus 186 ~n~--~------~~~~~------~~l~~~~~~~gi~v~ 209 (235)
++. . +...+ .+++++++++|+.+.
T Consensus 142 ~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 142 ASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 222 1 11111 468899999999885
No 83
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=68.74 E-value=83 Score=28.63 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=59.8
Q ss_pred eCCCCCCCCcHHHHHHHHHhc----CC-CCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCC----cccEE
Q 026625 60 DTADKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE----YIDLY 130 (235)
Q Consensus 60 DtA~~Yg~g~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~----~iDl~ 130 (235)
+..-.|| .|+.+-++|++ .+ .+=++|.|-....- --+.+..-+++.-+.++-+ .+.++
T Consensus 63 E~d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~ei----------IGDDi~~vv~~~~~~~~~e~~~~~~~vi 129 (454)
T cd01973 63 EDSAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEI----------IGDDIEGVIRKLNEALKEEFPDREVHLI 129 (454)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhh----------hccCHHHHHHHHHhhhhhccCCCCCeEE
Confidence 3445788 77777888887 22 23366666553321 1122333333322222111 36889
Q ss_pred EeccCCCCCC-HHHHHHHHHHHHH--------cCCccEEEeCC--CCHHHHHHHHhcCCeeEEee
Q 026625 131 YQHRVDTSVP-IEETIGEMKKLVE--------EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 131 ~lh~~~~~~~-~~~~~~~l~~l~~--------~G~ir~iGvSn--~~~~~l~~~~~~~~~~~~q~ 184 (235)
.+|.|+.... ......+++.+++ +++|.-||-.+ .+.+.+.++++...+.++.+
T Consensus 130 ~v~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 130 PVHTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred EeeCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 9998876533 2233333333332 46688887443 23467777777777766654
No 84
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=68.56 E-value=72 Score=26.98 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCC-CEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
.+...+.++.-.+.+..|+..++.-|....+..+.-+-+ +.++ .+-....+.-. +.+...+...+...
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~-l~~~~g~~~i~Hltcr---------~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASR-AQNVVGVETCMHLTCT---------NMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHH-HHHhcCCCeeEEeccC---------CCCHHHHHHHHHHH-
Confidence 345566666667889999999865543344444433322 2222 22222222111 23455565555443
Q ss_pred HHcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHc-CCccEEEeCCCC--------HH-HHHHHHhc----
Q 026625 120 RRLDVEYIDLYYQHRVDT---------SVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------PD-TIRRAHAV---- 176 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~-G~ir~iGvSn~~--------~~-~l~~~~~~---- 176 (235)
..+|++ +++.|-...+ ...++.+.+.++.+++. |.--.||+..++ .+ ++..+.+.
T Consensus 84 ~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 677765 3444432211 11233455666666554 444579998663 11 34444433
Q ss_pred CCeeEEeeccCcccccccchHHHHHHHhCCeE
Q 026625 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGI 208 (235)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 208 (235)
..+-+-|+-|+.-. -...++.|++.|+.+
T Consensus 162 A~f~iTQ~~Fd~~~---~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 162 ADFIITQLFYDVDN---FLKFVNDCRAIGIDC 190 (281)
T ss_pred CCEeeccceecHHH---HHHHHHHHHHcCCCC
Confidence 34566676665422 257888899987654
No 85
>PRK00208 thiG thiazole synthase; Reviewed
Probab=68.49 E-value=68 Score=26.69 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEee
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 184 (235)
.+.+...+-.+-..+-++++.|-+=.+..+... .++.+++++.++|+++|.+- +=+|+-++....++.+. .+++++.
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~vmP 150 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAVMP 150 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeCC
Confidence 456666667777888889988887777655443 45789999999999999865 44566677776666655 4455533
Q ss_pred ccCccccc--c-cchHHHHHHH-hCCeEEe
Q 026625 185 EWSLWARD--I-ENEIVPLCRE-LGIGIVP 210 (235)
Q Consensus 185 ~~n~~~~~--~-~~~l~~~~~~-~gi~v~a 210 (235)
-=+++-.. . ..++++..++ .++.|++
T Consensus 151 lg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 151 LGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred CCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 11222221 1 1456776666 4788876
No 86
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.11 E-value=74 Score=26.95 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHcC-CCeEeC---CCC-----CCCCcHHHHHHHHHhcCCC-CCEEEEeccccccCCCcccccCCCHH
Q 026625 40 SEEDGISIIKHAFSKG-ITFFDT---ADK-----YGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPE 109 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~-----Yg~g~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~ 109 (235)
+.++..++.+.+.++| +..||. .++ |..+...+.+-+.++.+.+ -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5678888888888998 999976 111 1223455666666665322 2678888987432 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEE-eccC--CCC---------------CC-HHHHHHHHHHHHHcCCccEEEeCCC-CHHH
Q 026625 110 YVRSCCEASLRRLDVEYIDLYY-QHRV--DTS---------------VP-IEETIGEMKKLVEEGKIKYIGLSEA-SPDT 169 (235)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~-lh~~--~~~---------------~~-~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~ 169 (235)
.+. .+-+.++..|.|.|++.- ++.. +.. .. ..-.++.+.++++.=.+--||+... +.++
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 233457778877776532 1111 000 00 0124666677766656888888875 7888
Q ss_pred HHHHHhcCCeeEEeeccCcccc-c----ccchHHHHHHHhCC
Q 026625 170 IRRAHAVHPITAVQLEWSLWAR-D----IENEIVPLCRELGI 206 (235)
Q Consensus 170 l~~~~~~~~~~~~q~~~n~~~~-~----~~~~l~~~~~~~gi 206 (235)
+.+++... .+.+|+-=-++.. . ...++-.++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88888754 6888874333331 1 11456666666664
No 87
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=67.92 E-value=64 Score=26.12 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
..+.++..++++.|.+.|+.-+-+.+.|- ....+.|+ ...+-|+|=++.+... .+.+.-...++.
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~~ 78 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETKE 78 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHHH
Confidence 35789999999999999999998877663 34444543 3478888888765522 223333444555
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCccEE--EeCCCCHHHHHHHHhc---CCeeEEeec--cCc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYI--GLSEASPDTIRRAHAV---HPITAVQLE--WSL 188 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~i--GvSn~~~~~l~~~~~~---~~~~~~q~~--~n~ 188 (235)
.+ ++|.|-||+++-...-.....+...+.+.+.++. |+.-.+ -.+-.+.+++..+.+. ...+++... |..
T Consensus 79 Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~ 157 (211)
T TIGR00126 79 AI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA 157 (211)
T ss_pred HH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 44 4799999998876543344567778888887764 543222 1222444666655543 567778877 653
No 88
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=67.71 E-value=30 Score=31.41 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ccCCC----------C-CCHHH----HHHHHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDT----------S-VPIEE----TIGEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~l-h~~~~----------~-~~~~~----~~~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++..+ +|+.++|.+|.+ |.|.. . ...++ ...+.+.|.+.|.. .+|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 46777887776555 688999988876 33321 0 11222 22355667788875 489999874
No 89
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=67.59 E-value=73 Score=28.58 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=58.3
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCC-----CcccEEEec
Q 026625 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV-----EYIDLYYQH 133 (235)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~-----~~iDl~~lh 133 (235)
-.|| .|+.+-+++++ .+.+-++|.|-.... -+-..++...+++.. ..+.++.++
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~--------------liGdDi~~v~~~~~~~~~~~~~~~vi~v~ 123 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTE--------------TIGDDVAGFIKEFRAEGPEPADFPVVYAS 123 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchh--------------hcCCCHHHHHHHHHhhccCCCCCeEEEee
Confidence 4567 57777788877 233446666654322 122223333333332 135678888
Q ss_pred cCCCCCC----HHHHHHHHHHH-------HHcCCccEEEeCCC---CHHHHHHHHhcCCeeEEee
Q 026625 134 RVDTSVP----IEETIGEMKKL-------VEEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 134 ~~~~~~~----~~~~~~~l~~l-------~~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~q~ 184 (235)
.|..... .+.++++|-+. ++.++|.-||-++. +.+++.++++...+.++.+
T Consensus 124 tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 124 TPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 8865432 23344444432 13456888876664 4678888888766666554
No 90
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=67.40 E-value=91 Score=27.68 Aligned_cols=143 Identities=14% Similarity=0.123 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc-----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
..+..++++.++++|+--+ .|++..--+.+-.|.++ +..+.++++.- +...+
T Consensus 40 pp~i~~Al~~rvdhGvfGY----~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~-------------------VVpgi 96 (388)
T COG1168 40 PPEIIEALRERVDHGVFGY----PYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPG-------------------VVPGI 96 (388)
T ss_pred CHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCc-------------------chHhH
Confidence 4677899999999996432 35422122344445554 22333333221 23334
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEE----EeCCC--CHHHHHHHHhcCCeeEEeeccCc
Q 026625 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYI----GLSEA--SPDTIRRAHAVHPITAVQLEWSL 188 (235)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~i----GvSn~--~~~~l~~~~~~~~~~~~q~~~n~ 188 (235)
...++.| |+-=|-+.++.|-.. ++-.+.+ ..|+ +-.. +=.-| +.+++++.+....+ ...+-||+
T Consensus 97 ~~~I~~~-T~~gd~Vvi~tPvY~-PF~~~i~------~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~v-kl~iLCnP 167 (388)
T COG1168 97 SLAIRAL-TKPGDGVVIQTPVYP-PFYNAIK------LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERV-KLFILCNP 167 (388)
T ss_pred HHHHHHh-CcCCCeeEecCCCch-HHHHHHh------hcCcEEEeccccccCCcEEecHHHHHHHHhcCCc-cEEEEeCC
Confidence 4444444 345588888877321 1111111 1111 0000 00011 44555555443321 23333444
Q ss_pred cccc-------ccchHHHHHHHhCCeEEecccCc
Q 026625 189 WARD-------IENEIVPLCRELGIGIVPYCPLG 215 (235)
Q Consensus 189 ~~~~-------~~~~l~~~~~~~gi~v~a~spl~ 215 (235)
-++. ....+.+.|++|||-||+=.--+
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccc
Confidence 4431 11567888888888888644333
No 91
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=67.34 E-value=72 Score=26.50 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (235)
.++.++..++++...+.|+..++..
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEee
Confidence 3577888999999999999999997
No 92
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=66.40 E-value=55 Score=27.29 Aligned_cols=100 Identities=18% Similarity=0.132 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CCHHH----HHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCee
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYY-QHRVDTS-VPIEE----TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT 180 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~-lh~~~~~-~~~~~----~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~ 180 (235)
+.+.+.+..++. ..=|.+.||+=. --+|... ...++ +...++.+++.-.+. +.+-+++++.++++++....-
T Consensus 22 ~~~~~~~~a~~~-~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~i 99 (257)
T cd00739 22 SLDKAVAHAEKM-IAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGADI 99 (257)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCCE
Confidence 445454444433 355888999842 2334332 22222 334455666553343 788899999999999875322
Q ss_pred EEeeccCcccccccchHHHHHHHhCCeEEecc
Q 026625 181 AVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 181 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (235)
+|- .+..... ..+++.++++|..++.+.
T Consensus 100 INd--isg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 100 IND--VSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EEe--CCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 232 3333221 579999999999999944
No 93
>PLN00191 enolase
Probab=66.29 E-value=72 Score=29.13 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEe-C-CCCHHHHHHHHhcCCeeEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-S-EASPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-S-n~~~~~l~~~~~~~~~~~~q 183 (235)
.+++.+.+-++..++ ..++.++..|-.. +-|+.+.+|.+..++.-+|= + ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 355555555544433 3456778777443 45777788888888876662 2 25688999999888888888
Q ss_pred eccCccccccc-chHHHHHHHhCCeEEec
Q 026625 184 LEWSLWARDIE-NEIVPLCRELGIGIVPY 211 (235)
Q Consensus 184 ~~~n~~~~~~~-~~l~~~~~~~gi~v~a~ 211 (235)
+..|-+-.-.+ .++++.|+++|+.++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 88775543222 67899999999999763
No 94
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=64.88 E-value=72 Score=26.49 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEE-eccCCCC-CC----HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYY-QHRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~-lh~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~ 179 (235)
.+.+.+.+..++. -.-|.+.||+=- --+|+.. .+ .+.+...++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~-~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRM-VEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 3556666555444 366889999853 3334321 11 23355566666655233 388999999999999987633
Q ss_pred eEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 180 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
-++- .+.... ..++++.++++|..++....
T Consensus 99 iINd--is~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 IIND--VSGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EEEe--CCCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 2222 233322 15789999999999888764
No 95
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.37 E-value=79 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKY 65 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y 65 (235)
.+.++..++++...+.|+..|+....-
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~ 42 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGA 42 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 477889999999999999999987543
No 96
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=64.37 E-value=10 Score=30.20 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeeccC
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n 187 (235)
.+..+|.||+=+.+. |..... -..+...++.+.-..+.+||. |.+.+.+.++.+...++++|++-+
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~ 80 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGD 80 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SG
T ss_pred HHHHcCCCEEeeecC--CCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCC
Confidence 456789998888643 432221 223444455444444489985 567788999998899999998644
No 97
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=64.17 E-value=62 Score=28.44 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-------------CC---HHHHHHHHH-HHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------VP---IEETIGEMK-KLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-------------~~---~~~~~~~l~-~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++.. .+++.+++.+|.+.-.+.. .+ ..+.++... .|.+.|. ..+++|||..
T Consensus 172 qt~~~~~~tl~~~-~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa~ 248 (375)
T PRK05628 172 ESDDDWRASLDAA-LEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWAR 248 (375)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-CeeeeccccC
Confidence 4667777777644 3588888888877632110 01 112333343 3455566 4688888864
No 98
>PRK00077 eno enolase; Provisional
Probab=64.06 E-value=86 Score=28.24 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CccEEEeCC--CCHHHHHHHHhcCCeeE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvSn--~~~~~l~~~~~~~~~~~ 181 (235)
.+++...+.+.+.++. .+++++..|-+. +-|+.+.+|.+.- +|.-+|==. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~----~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDE----NDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCC----ccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 3555565555555554 457778877543 3466666666653 455444332 36899999998888889
Q ss_pred EeeccCccccccc-chHHHHHHHhCCeEEe
Q 026625 182 VQLEWSLWARDIE-NEIVPLCRELGIGIVP 210 (235)
Q Consensus 182 ~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a 210 (235)
+|+..+-+-.-.+ .++...|+++|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9998776543222 6789999999997654
No 99
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.01 E-value=23 Score=30.70 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCCCceecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCC--eEeCCCCCCCCcHHHHHHHHHhcCCCC
Q 026625 7 LQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGIT--FFDTADKYGPYTNEILLGKALKELPRE 84 (235)
Q Consensus 7 ~~m~~~~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~--~~DtA~~Yg~g~sE~~lG~al~~~~R~ 84 (235)
++|.+..++ .|..+-..|+|+ +|. =.++.|-..|.+ .||+++.= .|+ +++..--|
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LGh------------~aVq~AKAMG~rV~vis~~~~k----kee----a~~~LGAd 228 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LGH------------MAVQYAKAMGMRVTVISTSSKK----KEE----AIKSLGAD 228 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cch------------HHHHHHHHhCcEEEEEeCCchh----HHH----HHHhcCcc
Confidence 577788885 788888888886 442 345666667755 67776421 343 44544556
Q ss_pred CEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
.++++++- ++.+. ++..++.- + +|....- .....-..+.-++..|++-.+|+-+
T Consensus 229 ~fv~~~~d---------------~d~~~-~~~~~~dg-~--------~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 229 VFVDSTED---------------PDIMK-AIMKTTDG-G--------IDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeEEecCC---------------HHHHH-HHHHhhcC-c--------ceeeeec-cccchHHHHHHhhcCCEEEEEeCcC
Confidence 66666652 33333 33333321 2 2222210 1112344566678899999999976
Q ss_pred CCHHHHHHHHhcCCeeEEeeccCccccccc-chHHHHHHHhCCe
Q 026625 165 ASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIG 207 (235)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~ 207 (235)
.. ..+.-.- .-+--..+-.|..-...+ +++++||.+++|.
T Consensus 283 ~~-~~~~~~~--lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 283 KP-LKLDTFP--LILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred Cc-ccccchh--hhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 52 1111000 012223344444443334 7899999999864
No 100
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.83 E-value=55 Score=28.71 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEec
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQH 133 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh 133 (235)
+.+.+.+.++... .++.+++.+|.+.
T Consensus 164 t~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 164 TLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 4555555554443 3566666665543
No 101
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=63.10 E-value=1e+02 Score=26.84 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEE-Eecc-CCCC----CCHHHHHHHHHHHHHcCC
Q 026625 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEGK 156 (235)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G~ 156 (235)
..++.|..|++......+ ..+.+... .+-+-|+..|+|+|++- -.|. +... .+.....+..+++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 457888888875431101 12444333 34456788898888772 2231 1111 111112344556666656
Q ss_pred ccEEEeCC-CCHHHHHHHHhcCCeeEEeec
Q 026625 157 IKYIGLSE-ASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 157 ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~ 185 (235)
+.-+++-. ++++.++++++....+.+++-
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSMA 306 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHhh
Confidence 77677655 578899999988777777764
No 102
>PLN02540 methylenetetrahydrofolate reductase
Probab=62.99 E-value=1.4e+02 Score=28.18 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCC-CEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
.+...+.++.-.+.|-.|+|.+..-|...++..+.-+.. +.++ .+-..-.+.- .+.+...+...+++.
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~-lq~~~Gie~i~HLTC---------rd~n~~~L~~~L~~a- 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANR-MQNMICVETMMHLTC---------TNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHH-HHHhcCCCeeEEeee---------cCCCHHHHHHHHHHH-
Confidence 345556666667889999999876665556666554433 2222 2211111111 124566677766655
Q ss_pred HHcCCCcccEEEeccCCCC---------CCHHHHHHHHHHHHHc-CCccEEEeCCCCH------------------HHHH
Q 026625 120 RRLDVEYIDLYYQHRVDTS---------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------DTIR 171 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~---------~~~~~~~~~l~~l~~~-G~ir~iGvSn~~~------------------~~l~ 171 (235)
..+|+. .++.|....+. ..+..+.+-++.+++. |..-.|||+.+.. .++.
T Consensus 83 ~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 788875 44555432221 1123355555555554 4567788886531 2455
Q ss_pred HHHhc----CCeeEEeeccCcccccccchHHHHHHHhCC
Q 026625 172 RAHAV----HPITAVQLEWSLWARDIENEIVPLCRELGI 206 (235)
Q Consensus 172 ~~~~~----~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi 206 (235)
.+.+. ..+-+-|+-|+. ..-...++.|++.||
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi 196 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGI 196 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCC
Confidence 54443 346666766653 112578888999984
No 103
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=62.66 E-value=98 Score=26.41 Aligned_cols=183 Identities=16% Similarity=0.156 Sum_probs=88.7
Q ss_pred cceeccccCCCCCC-CCCCHHHHHHHHHHHH-HcCCCeEeCCCCCCCCc---HHHHHHHHHhcC--CCCCEEEEeccccc
Q 026625 23 KLGYGCMSLSGCYN-SPLSEEDGISIIKHAF-SKGITFFDTADKYGPYT---NEILLGKALKEL--PRENIQVATKFGFV 95 (235)
Q Consensus 23 ~lg~G~~~~~~~~~-~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~g~---sE~~lG~al~~~--~R~~~~I~tK~~~~ 95 (235)
.|.||++.-.. +. ...+.++..+.+...+ ..|.+.+|--..|+.-. +-..+-++|+.+ .+..+.|+--+...
T Consensus 71 iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~ 149 (294)
T cd06543 71 IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVL 149 (294)
T ss_pred EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45777765322 21 1235566666666666 45999999877775311 124555666652 22355555554322
Q ss_pred cCCCcccccCCCHHHHHHHHHHHHHHcCC--CcccEEEeccCCC--CCCH-HHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 026625 96 ELGFTSVIVKGTPEYVRSCCEASLRRLDV--EYIDLYYQHRVDT--SVPI-EETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (235)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--~~iDl~~lh~~~~--~~~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 170 (235)
.. .++++.+ .+-+..+.-|+ ++|.+.-...-.. ...+ ..+..+.+.++.+=+--+=+ ++.+++
T Consensus 150 p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~ 217 (294)
T cd06543 150 PT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAEL 217 (294)
T ss_pred CC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHH
Confidence 21 1333322 23344455564 3444433332222 1222 34445555444331111111 444444
Q ss_pred HHHHhcCCe-eEEeeccCcccccccchHHHHHHHhCCeEEecccCcccc
Q 026625 171 RRAHAVHPI-TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 171 ~~~~~~~~~-~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
-..+...+. -.+=..=-++.....+.+.+|++++||+.+++..+.+..
T Consensus 218 ~~~ig~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 218 WAMIGVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHccccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 444444331 000000001111112789999999999999999987665
No 104
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=62.51 E-value=51 Score=28.95 Aligned_cols=59 Identities=17% Similarity=0.029 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEecc-CCCC------------CCHH---HH-HHHHHHHHHcCCccEEEeCCCC
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS------------VPIE---ET-IGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~-~~~~------------~~~~---~~-~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
.+.+.+.+.++. +.+|+.+++.+|.+.- |... ...+ +. -.+.+.|.+.|.. .+++|||.
T Consensus 164 qt~~~~~~~l~~-~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa 239 (377)
T PRK08599 164 QTIEDFKESLAK-ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFA 239 (377)
T ss_pred CCHHHHHHHHHH-HHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-Eeeeeeee
Confidence 356677776654 4557888877775431 2100 0111 12 2355566667764 57888875
No 105
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.14 E-value=66 Score=28.48 Aligned_cols=87 Identities=13% Similarity=0.235 Sum_probs=58.4
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEEeC--CCCHHHHHHHH---hcC------CeeEEe
Q 026625 130 YYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPDTIRRAH---AVH------PITAVQ 183 (235)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~~---~~~------~~~~~q 183 (235)
+.||.|++. -+++++++++.+..++ |+ +-|+=+. |-+.++..++. +.. +..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 778999653 2578899999988654 32 2333222 44555555544 434 568999
Q ss_pred eccCccccc----c-c---chHHHHHHHhCCeEEecccCcc
Q 026625 184 LEWSLWARD----I-E---NEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 184 ~~~n~~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~ 216 (235)
++||+.... + . ..+.+.++++||.+......+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 999997532 1 1 4577788899999999988744
No 106
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=61.93 E-value=89 Score=28.28 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=59.1
Q ss_pred CCCCCCCcHHHHHHHHHhc----CCC-CCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCC
Q 026625 62 ADKYGPYTNEILLGKALKE----LPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVD 136 (235)
Q Consensus 62 A~~Yg~g~sE~~lG~al~~----~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~ 136 (235)
.-.|| .|..|-++|++ .++ +-++|.|-....- .-+.+..-+++.-++++ +.++.+|.|+
T Consensus 96 d~V~G---g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----------iGdDi~~v~~~~~~~~~---~pvi~v~t~g 159 (443)
T TIGR01862 96 DIVFG---GEKKLKKLIHEAFTEFPLIKAISVYATCPTGL----------IGDDIEAVAKEVSKEIG---KDVVAVNCPG 159 (443)
T ss_pred ceeeC---cHHHHHHHHHHHHHhCCccceEEEECCChHHH----------hccCHHHHHHHHHHhcC---CCEEEEecCC
Confidence 34577 57777888877 344 5566666543221 12233333333334444 6899999986
Q ss_pred CCC-----CHHHHHHH-HHHHH--------HcCCccEEEeCCC--CHHHHHHHHhcCCeeEE
Q 026625 137 TSV-----PIEETIGE-MKKLV--------EEGKIKYIGLSEA--SPDTIRRAHAVHPITAV 182 (235)
Q Consensus 137 ~~~-----~~~~~~~~-l~~l~--------~~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~ 182 (235)
... ....+.++ +++++ +.+.|.-||-.++ +.+++.++++...+.++
T Consensus 160 f~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 160 FAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred ccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEE
Confidence 543 12333443 33443 2467888886554 34577777777655544
No 107
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=61.45 E-value=17 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.0
Q ss_pred cccchHHHHHHHhCCeEEecccCcc
Q 026625 192 DIENEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 192 ~~~~~l~~~~~~~gi~v~a~spl~~ 216 (235)
+...++++.|++.||.|++|-.+..
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeeec
Confidence 3347899999999999999988763
No 108
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=61.35 E-value=66 Score=28.97 Aligned_cols=60 Identities=13% Similarity=-0.065 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC------C-CHH---HHH-HHHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------V-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~------~-~~~---~~~-~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++..+ +|+.+++.+|.+.-.+.. . ..+ +.+ .+.+.|.+.|. +.+++|||..
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 46788888887665 589999999887643211 0 111 233 34455667776 5599999874
No 109
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=60.33 E-value=1.1e+02 Score=26.31 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCCCCC--cHHHHHHHHHhc---CC-CCCEEEEeccccccCCCcccccCCCHHHH
Q 026625 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPY--TNEILLGKALKE---LP-RENIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g--~sE~~lG~al~~---~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
.+.++..++++...+. |++-+--+. |+- .+...+.+.++. .+ -+.+.|.|+..... +..+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~-----------p~ri 185 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD-----------PARV 185 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC-----------hhhc
Confidence 3567788888876655 887552221 110 122333333333 22 33466777754322 3334
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEE------EeCCCCHHHHHHHHh
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI------GLSEASPDTIRRAHA 175 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i------GvSn~~~~~l~~~~~ 175 (235)
.+.+-+.|++.|.. ..+.+|...+..-.+++.++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 186 t~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 186 TPALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred CHHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 44444566666732 357778765443357899999999999952211 33 567776666654
No 110
>PRK14017 galactonate dehydratase; Provisional
Probab=59.84 E-value=1.2e+02 Score=26.65 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC-----CCCCC---cHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTAD-----KYGPY---TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~-----~Yg~g---~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
+.++..+.+..+.+.|++.|=.-- .++.. ..+...=+++++.-.+++.|.-=... ..+.+..
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~----------~w~~~~A 193 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHG----------RVHKPMA 193 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCC----------CCCHHHH
Confidence 456677778888899999886531 01100 11122223444311123333332211 1233322
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccc
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (235)
.+-++.|. .+++.++..|-+. +.++.+.+|++...+. ..|=|.++...+..+++...++++|+..+..-
T Consensus 194 ----~~~~~~l~--~~~~~~iEeP~~~----~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 194 ----KVLAKELE--PYRPMFIEEPVLP----ENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ----HHHHHhhc--ccCCCeEECCCCc----CCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 22333332 2455666665432 2357788888877665 55667789999999998888899999866543
Q ss_pred c-cccchHHHHHHHhCCeEEeccc
Q 026625 191 R-DIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 191 ~-~~~~~l~~~~~~~gi~v~a~sp 213 (235)
. ..-..+.+.|+++||.++..+.
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCC
Confidence 2 1126899999999999997764
No 111
>PTZ00081 enolase; Provisional
Probab=59.52 E-value=1.1e+02 Score=27.75 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CccEEEe--CCCCHHHHHHHHhcCCeeE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL--SEASPDTIRRAHAVHPITA 181 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGv--Sn~~~~~l~~~~~~~~~~~ 181 (235)
.+++.+.+-+.+.++.++ ++++..|-.. +-|+.+.+|.+.= .+.-+|= +..++..+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 466777666666666654 5677766443 4466666666553 5655554 3466899999999888889
Q ss_pred EeeccCccccccc-chHHHHHHHhCCeEEe
Q 026625 182 VQLEWSLWARDIE-NEIVPLCRELGIGIVP 210 (235)
Q Consensus 182 ~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a 210 (235)
+|+..|-+-.-.+ .+++..|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 9998876543222 6789999999998776
No 112
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=59.27 E-value=97 Score=25.25 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=46.6
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCeeEEeeccCccccccc
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDIE 194 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~ 194 (235)
+.++.+|. |.+.+|..+...... -.|+.+.++++.-.+.-+..-. .+++.++++++....+.+.+---+......
T Consensus 156 ~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 34456664 566676654321111 1356666666654566555543 457888888876666666664333332222
Q ss_pred -chHHHHHHHh
Q 026625 195 -NEIVPLCREL 204 (235)
Q Consensus 195 -~~l~~~~~~~ 204 (235)
.++.++|+++
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 5566666653
No 113
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=58.63 E-value=1e+02 Score=25.40 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCC-CCC-C-cHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADK-YGP-Y-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~-Yg~-g-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 116 (235)
+.+|+ ..|++.|...||.=+- -|. | .....+.+. .+.-....-+|..++-.. ..|..+..+..
T Consensus 9 ~~~EA----~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i-~~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEA----EEALAGGADIIDLKNPAEGALGALFPWVIREI-VAAVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHH----HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHH-HHHcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 45555 5678999999998642 221 2 233444433 333333466787777554 23455554444
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHH-------HHcCCccEEEeCCCC------HHHHHHHHhcCCeeEEe
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKL-------VEEGKIKYIGLSEAS------PDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l-------~~~G~ir~iGvSn~~------~~~l~~~~~~~~~~~~q 183 (235)
..- .-|+||+-+=+.-..+ .++..+.|+.+ -.+.++-.++.+.+. +-.+-++.....++.++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred HHH-hcCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 333 3588888776654332 23333333332 234567788888874 45555555556677777
Q ss_pred ecc------Cccccc---ccchHHHHHHHhCCeE
Q 026625 184 LEW------SLWARD---IENEIVPLCRELGIGI 208 (235)
Q Consensus 184 ~~~------n~~~~~---~~~~l~~~~~~~gi~v 208 (235)
+.- ++++.- ...++++.|+++|+.+
T Consensus 150 lDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 150 LDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 753 222221 1256788888888754
No 114
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=58.39 E-value=1.3e+02 Score=27.02 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CccEEEeCC--CCHHHHHHHHhcCCeeEE
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITAV 182 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvSn--~~~~~l~~~~~~~~~~~~ 182 (235)
+++...+-++..++. .+++++..|-.. +-|+.+.+|.+.- .+.-+|=-+ .++..+.++++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444444444433333 456777766443 3466777776653 555444332 258999999988888899
Q ss_pred eeccCccccccc-chHHHHHHHhCCeEEe
Q 026625 183 QLEWSLWARDIE-NEIVPLCRELGIGIVP 210 (235)
Q Consensus 183 q~~~n~~~~~~~-~~l~~~~~~~gi~v~a 210 (235)
|+..|-+-.-.+ .++.+.|+++|+.++.
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 988776543222 6789999999998553
No 115
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=57.90 E-value=52 Score=25.72 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=61.7
Q ss_pred HcCCCeEeCCCC----CC---CCcHHHHHHHHHhcCCCCCEEEEeccccccCCCccc--ccCCCHHHHHHHHHHHHHHcC
Q 026625 53 SKGITFFDTADK----YG---PYTNEILLGKALKELPRENIQVATKFGFVELGFTSV--IVKGTPEYVRSCCEASLRRLD 123 (235)
Q Consensus 53 ~~Gi~~~DtA~~----Yg---~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~--~~~~~~~~i~~~~~~sL~~Lg 123 (235)
..++-++||-.. |+ -|+.+..+-..|. -.|-+++|.++---.+.+++.. ....++..+.+-+++.|++-+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~-~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIA-EYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHh-hcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 458999999753 21 0223334445555 3567777777644333333322 222357788888999999987
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 026625 124 VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (235)
Q Consensus 124 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 155 (235)
..| +-+..++.......+.++.+++..++
T Consensus 157 ~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 765 45566655566677888888887766
No 116
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.89 E-value=1.3e+02 Score=26.16 Aligned_cols=147 Identities=19% Similarity=0.138 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc-CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 120 (235)
++..+.+..+.+.|++.|=.=- +.....+.+ +++++ .+ ++.|.-=... ..+.+... .++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN~----------~~~~~~a~-----~~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADANS----------AYTLADIP-----LLK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECCC----------CCCHHHHH-----HHH
Confidence 5667778888899999874321 211223333 44554 33 3333322211 12333321 133
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchHH
Q 026625 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIV 198 (235)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~ 198 (235)
+| +..++.++..|-. .+-++.+.++++.-. =-..|=|.++..++..+++...++++|+..+..-.-. -..+.
T Consensus 199 ~l--~~~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RL--DEYGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hh--hcCCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 43 2245666665532 234667777776533 2355667789999999998888899999765543211 26789
Q ss_pred HHHHHhCCeEEecccC
Q 026625 199 PLCRELGIGIVPYCPL 214 (235)
Q Consensus 199 ~~~~~~gi~v~a~spl 214 (235)
..|+.+|+.++..+.+
T Consensus 273 ~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 273 DLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHcCCcEEecCcc
Confidence 9999999999875544
No 117
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=57.75 E-value=52 Score=27.55 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=50.4
Q ss_pred CHH-HHHHHHHHHHHcCCCeEeCCCCCCC-CcHH---HHHHHHHhcC-CCCCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 40 SEE-DGISIIKHAFSKGITFFDTADKYGP-YTNE---ILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~sE---~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
+++ +...+.+.|.++|..|+=|+..|+. |-+. +.+-+++++. ..++ +.-|...-- .+.+...+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGGI---------rt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGGV---------RTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCCC---------CCHHHHHH
Confidence 344 5889999999999999999999975 3332 3333443321 0122 334443211 24677778
Q ss_pred HHHHHHHHcCCCccc
Q 026625 114 CCEASLRRLDVEYID 128 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iD 128 (235)
-++..-+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 888888899988766
No 118
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=57.60 E-value=73 Score=28.32 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCC-C------------CCCHH---HHHH-HHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVD-T------------SVPIE---ETIG-EMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~-~------------~~~~~---~~~~-~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++..++ |+.++|.+|.+.-.+ . ..+.+ +.++ +.+.|.+.|..+ +++|||..
T Consensus 174 qt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 174 QTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 467788888887775 789999999886322 1 00111 2333 344566677754 79999864
No 119
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=57.38 E-value=1.2e+02 Score=25.84 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHHHHHhcCCeeEEeec
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 185 (235)
+++.+++.++..++ .+-+.+--+-++..+...+.+...+.++..++.|+--.+=++-. +...+..++.....+.+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 35667777776654 22222322334433333445566677777777776555544432 23344444332222111100
Q ss_pred cCcccccccchHHHHHHHhCCeEE
Q 026625 186 WSLWARDIENEIVPLCRELGIGIV 209 (235)
Q Consensus 186 ~n~~~~~~~~~l~~~~~~~gi~v~ 209 (235)
+++. ..++.++.++++|+.+.
T Consensus 217 ~~l~---~~~~~i~~l~~~gi~v~ 237 (324)
T TIGR01430 217 VRAL---EDPELLKRLAQENITLE 237 (324)
T ss_pred hhhc---cCHHHHHHHHHcCceEE
Confidence 1111 12468888888888774
No 120
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.06 E-value=69 Score=25.91 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHh---cCCeeEE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA---VHPITAV 182 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~---~~~~~~~ 182 (235)
++.+...+ +-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++-.....++.+.+ ...++.+
T Consensus 11 ~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLE-IAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 44555444 4456999999998887 332222223444555555555 5555666667777776444 2444444
Q ss_pred eeccCccc--c------------cccchHHHHHHHhCCeE
Q 026625 183 QLEWSLWA--R------------DIENEIVPLCRELGIGI 208 (235)
Q Consensus 183 q~~~n~~~--~------------~~~~~l~~~~~~~gi~v 208 (235)
.+..+.-+ . ..-...+++++++|..+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44433322 1 01156788999999888
No 121
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.72 E-value=1.3e+02 Score=25.92 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=48.1
Q ss_pred EEeccCCCCC-CHHHHHHHHHHHHHcCCccEEEeCC---------CCHHHHHHHHhcCCeeEEeeccCcccc-cc-cchH
Q 026625 130 YYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHAVHPITAVQLEWSLWAR-DI-ENEI 197 (235)
Q Consensus 130 ~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvSn---------~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~-~~~l 197 (235)
+.+-.-++.. +.....+.++.+++.+.|+.+.+.+ .+.+.++.+.+......+.++.|-... .. -...
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~a 219 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAA 219 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHH
Confidence 4444333332 2346677777777778776555533 233344444443322234444431110 11 1456
Q ss_pred HHHHHHhCCeEEecccCcccc
Q 026625 198 VPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G~ 218 (235)
++.+++.||.+...++|..|.
T Consensus 220 i~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 220 CARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHcCCEEEEEeeEeCCC
Confidence 777888888888888887764
No 122
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=56.40 E-value=99 Score=24.45 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=26.2
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 026625 126 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (235)
Q Consensus 126 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 170 (235)
.+|.++||..++ .+..+.+.+......++.+|++.+...++
T Consensus 73 ~~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378899997642 13344444433346899999998765444
No 123
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=56.02 E-value=55 Score=28.69 Aligned_cols=87 Identities=11% Similarity=0.174 Sum_probs=56.2
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCCccEEEe-------CCCCHH---HHHHHHhcCCeeEEeeccCc
Q 026625 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGL-------SEASPD---TIRRAHAVHPITAVQLEWSL 188 (235)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGv-------Sn~~~~---~l~~~~~~~~~~~~q~~~n~ 188 (235)
+.||.|+.. .++++.+++.+...+... +.|-+ -|-+.+ .+.+++...+..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 678998652 236677788777765543 33322 133344 45555555666899999999
Q ss_pred ccccc-----c---chHHHHHHHhCCeEEecccCccc
Q 026625 189 WARDI-----E---NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 189 ~~~~~-----~---~~l~~~~~~~gi~v~a~spl~~G 217 (235)
..... . ..+.+...++||.+....+-+..
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~D 331 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDD 331 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccc
Confidence 87532 1 45677777889999988876443
No 124
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=55.86 E-value=1e+02 Score=26.63 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 121 (235)
..-+++++.+.+.|| .+|.|+. +++.+=+++. . -+..+|+|......-. +..+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~-~-s~~PviaSHSN~~al~------~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLD-L-SKAPVVASHSNARALV------DHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHh-c-cCCceEEecCCchhcc------CCCCCCCHHHHHHHHhc
Confidence 456899999999998 6899974 6777777877 2 4455666655433211 11222234455555556
Q ss_pred cCCCcccEEEeccC-----CCCCCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 122 LDVEYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 122 Lg~~~iDl~~lh~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
=|+ |.+.++-.. ....++++..+.++.+++.+=+++||+.+
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 554 444433221 13457899999999999999999999965
No 125
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=55.86 E-value=1e+02 Score=24.60 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCCCCC--cHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCC
Q 026625 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 106 (235)
+.++..+..+.+.++|+..||.- ..||.. ..-+.+-+.++.+. .-.+-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 56788888899999999998763 235421 13344445554421 111456666543221 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC--CHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHHHHHhcCCeeEEe
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q 183 (235)
.+...+ +-+.|+..|+ |.+.+|...... .-...|+.+.++++.-.+.-++.... +.+++.++++....+.++
T Consensus 137 -~~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 -EEETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred -chHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 112222 2234556675 556677653211 11135677777877767777776654 678888888776777777
Q ss_pred eccCc
Q 026625 184 LEWSL 188 (235)
Q Consensus 184 ~~~n~ 188 (235)
+--.+
T Consensus 212 igr~~ 216 (231)
T cd02801 212 IGRGA 216 (231)
T ss_pred EcHHh
Confidence 75433
No 126
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=55.81 E-value=70 Score=28.61 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCC--CcccccCCCHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG--FTSVIVKGTPEYVRSCCE 116 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~--~~~~~~~~~~~~i~~~~~ 116 (235)
+.++-.+-++.|++.|...+ |-|. .| .-..+-+.+-+ ...+-|.|= ...... ......+.+++.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~--~s~vpvGTV-PiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILD--AVPVPVGTV-PIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 44444566899999998744 6553 33 33333333321 112222221 000000 000123466777777666
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
+..+ +-+|++-+|.- -..+.++.+++.|+ ..|+-+-.
T Consensus 148 ~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRG 184 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRG 184 (423)
T ss_pred HHHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCc
Confidence 5554 55889999965 36778888988885 45555443
No 127
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.32 E-value=1.4e+02 Score=25.97 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCC-----CCCCHHHHHHHHHHHHHc-CCccEEEeCC---CCHHHHHHHHh
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVD-----TSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPDTIRRAHA 175 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~-----~~~~~~~~~~~l~~l~~~-G~ir~iGvSn---~~~~~l~~~~~ 175 (235)
.++.+.+.+ +-+.|.+.|+++|.+-+.-... ...+....++.++.+.+. ...+...+.. .+.+.++.+.+
T Consensus 21 ~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~ 99 (337)
T PRK08195 21 QYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYD 99 (337)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHH
Confidence 456666655 4456999999999985321110 001111134555555333 3455554432 25677777665
Q ss_pred cCCeeEEeeccCcccccccchHHHHHHHhCCeEEec
Q 026625 176 VHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 176 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (235)
. .++.+.+..+.-+...-...+++++++|..+...
T Consensus 100 ~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 100 A-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred c-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 4 3455554443322222367889999999877654
No 128
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=54.85 E-value=1.6e+02 Score=26.30 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=56.5
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhC
Q 026625 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG 205 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g 205 (235)
|-+.+..|. ....+..+..+.+.+.++.+-+...+.+.+++++.. .++.++..+-|+.-+..+ .++.+.|+++|
T Consensus 100 D~Vvv~~p~----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~g 175 (405)
T PRK08776 100 DTLVVPHDA----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVG 175 (405)
T ss_pred CEEEEccCC----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 556665443 234555566655555677666665678888877643 445566656666544333 78999999999
Q ss_pred CeEEecccCcccc
Q 026625 206 IGIVPYCPLGRGF 218 (235)
Q Consensus 206 i~v~a~spl~~G~ 218 (235)
+-++.=..++.+.
T Consensus 176 i~vIvD~a~a~~~ 188 (405)
T PRK08776 176 ALTVVDNTFLSPA 188 (405)
T ss_pred CEEEEECCCcccc
Confidence 9999777776554
No 129
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=54.34 E-value=1.2e+02 Score=25.92 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=56.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchHHHHHHHh
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPLCREL 204 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~ 204 (235)
.++.++..|-+. . +.+.++.+.-.+ -..|=|-++..++.+++.....+++|+.....-.-. -..+.+.|+.+
T Consensus 183 ~~i~~iEqP~~~---~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPD---A---DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCC---H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 355555555321 1 556666555322 244556678888888888777788888766543211 26789999999
Q ss_pred CCeEEecccCcccc
Q 026625 205 GIGIVPYCPLGRGF 218 (235)
Q Consensus 205 gi~v~a~spl~~G~ 218 (235)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999877666554
No 130
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.27 E-value=1.1e+02 Score=25.53 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEEee
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 184 (235)
++.+...+-+ +.|.++|++.|.+-. |... .+.++..+.+.+.++ .+-+++...+.+.++.+.+. .++.+-+
T Consensus 19 ~s~~~k~~i~-~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~i 90 (262)
T cd07948 19 FDTEDKIEIA-KALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVDL 90 (262)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEEE
Confidence 4555555544 459999988888763 4332 344555555555443 44456667788888888875 3333333
Q ss_pred ccCc--------cccccc------chHHHHHHHhCCeEEec
Q 026625 185 EWSL--------WARDIE------NEIVPLCRELGIGIVPY 211 (235)
Q Consensus 185 ~~n~--------~~~~~~------~~l~~~~~~~gi~v~a~ 211 (235)
.++. +....+ .+.+++++++|+.|...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 2221 111111 45678889999876654
No 131
>PRK09061 D-glutamate deacylase; Validated
Probab=53.72 E-value=1.8e+02 Score=26.78 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHH--
Q 026625 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR-- 120 (235)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~-- 120 (235)
+..++++.|++.|+..|=+...|-++.+...+-+.++...+.+..|......... .++.....++++.++
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHH
Confidence 3677888899999999987666755556666666666544556666665543210 011122233343333
Q ss_pred -HcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 121 -RLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 121 -~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
..|. -+.+.|--... ....+.++.+++++++|.--..-++-|.
T Consensus 242 ~~~G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 242 AETGA---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHhCC---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4443 35666654321 3456788999999999854444444333
No 132
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=53.61 E-value=1.5e+02 Score=27.01 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCccE----EEeCCCCHHHHHHHHhc---CCeeEEeeccCcccccccchHHHHHHHhCCeE
Q 026625 139 VPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQLEWSLWARDIENEIVPLCRELGIGI 208 (235)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 208 (235)
...++..++++.+++.|.--. +|+-..+.+.+++.++. ..++.++ ++++..-+...+.+.+++.|.-.
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCCCcHHHHHHHHCCCcC
Confidence 346678889999999986433 26667777777766543 3444333 45555555578899999888643
No 133
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=53.58 E-value=62 Score=26.38 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCC-CcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
.++++..++.+.+.++|..|+=|+..|+. |.+.+.+....+.. +.++ .-|....- .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-~~~~--~IKasGGI---------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-GPRV--GVKASGGI---------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-CCCc--eEEeeCCc---------CCHHHHHHHHHc
Confidence 46788899999999999999999999964 45555555443322 2222 22221111 245666666666
Q ss_pred HHHHcCCC
Q 026625 118 SLRRLDVE 125 (235)
Q Consensus 118 sL~~Lg~~ 125 (235)
--.++|++
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 55666664
No 134
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=52.92 E-value=1.4e+02 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTAD 63 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (235)
++.++..++++...+.|+..|+...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4678889999999999999999864
No 135
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.87 E-value=1.8e+02 Score=28.03 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC--CCCCCCcHHHHHHHHHhcCCCCCEEEEe--ccccccCCCc---ccccC--C--
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTA--DKYGPYTNEILLGKALKELPRENIQVAT--KFGFVELGFT---SVIVK--G-- 106 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~g~sE~~lG~al~~~~R~~~~I~t--K~~~~~~~~~---~~~~~--~-- 106 (235)
+.|+++.++.++...+.|+.-|=.+ ..|-+...|..+++.+++.- .++-|++ ++++...... ....+ .
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 4689999999999999999976555 45666789999999999844 6666766 7776332110 00000 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCC
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~ 138 (235)
--....++++..|+.-|.+ .+++++.+....
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl 244 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGGL 244 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCcc
Confidence 1244556677777787765 678888776443
No 136
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=52.68 E-value=71 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ 132 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~l 132 (235)
.+.+.+.+.++..+ .++.+++.+|.+
T Consensus 215 qt~e~~~~~l~~~~-~l~~~~i~~y~l 240 (453)
T PRK09249 215 QTPESFARTLEKVL-ELRPDRLAVFNY 240 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEccC
Confidence 35566666665444 467777777654
No 137
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=51.70 E-value=1.8e+02 Score=26.05 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CccEEEeC--CCCHHHHHHHHhcCCeeE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHAVHPITA 181 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--n~~~~~l~~~~~~~~~~~ 181 (235)
.+++...+-+...++. .+++++..|-+..+ |+.+.+|.+.- .+.-+|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 3555555544444444 35778887755433 56666666652 44433322 247899999998888889
Q ss_pred EeeccCccccccc-chHHHHHHHhCCeEEe
Q 026625 182 VQLEWSLWARDIE-NEIVPLCRELGIGIVP 210 (235)
Q Consensus 182 ~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a 210 (235)
+|+..+-+-.-.+ .++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 9988776543222 6788999999999864
No 138
>PRK07094 biotin synthase; Provisional
Probab=51.23 E-value=1.3e+02 Score=25.74 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC----CCCCCCcHHHHHHHHHhcCCC-CCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTA----DKYGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
.+.++..+.++.+.+.|++.|--. +.|. ...+-+.++.+.+ .++.+..-.+. .+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l-- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT----DEKIADIIKEIKKELDVAITLSLGE-----------RSYEEY-- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----HHHHHHHHHHHHccCCceEEEecCC-----------CCHHHH--
Confidence 367888899999999999877432 2232 2334445544322 24433321111 223322
Q ss_pred HHHHHHHHcCCCcccEEEeccC--------CCCCCHHHHHHHHHHHHHcCCcc----EEEeCCCCHHHHHHHHh
Q 026625 114 CCEASLRRLDVEYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPDTIRRAHA 175 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~--------~~~~~~~~~~~~l~~l~~~G~ir----~iGvSn~~~~~l~~~~~ 175 (235)
..|+..|.+.+-+ -+... ......++.+++++.+++.|.-- -+|+...+.+++.+.+.
T Consensus 133 ---~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 133 ---KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred ---HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 2455667554331 11111 11245678899999999998622 24555667776665543
No 139
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=50.77 E-value=61 Score=26.21 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHH-cCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (235)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 118 (235)
+.+++..+.+...+ .|+-|...++-|= +-+...+..+..+. .++++... +.+.+.+. +.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i~----~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEIL----EI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHHH----HH
Confidence 55666555554233 3455566688775 55555555554433 11333322 22344443 34
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
++.+ .+|++|||...+. +..+.|.+...-..++++.++.-.
T Consensus 71 ~~~~---~ld~VQlHG~e~~----~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 71 AEEL---GLDAVQLHGDEDP----EYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHhc---CCCEEEECCCCCH----HHHHHHHhhcCCceEEEEEeCCcc
Confidence 4455 4799999987432 333333333334689999998643
No 140
>PRK12928 lipoyl synthase; Provisional
Probab=50.68 E-value=1.6e+02 Score=25.08 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeC----CCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDT----ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dt----A~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.+.++..+.++.+.+.|++.+-. -+.+.++.. ..+-+.++.+....-.+.-++ .+++.+..
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~-~~~~ell~~Ik~~~p~~~I~~-------------ltp~~~~~- 151 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGA-AHFVATIAAIRARNPGTGIEV-------------LTPDFWGG- 151 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCH-HHHHHHHHHHHhcCCCCEEEE-------------eccccccC-
Q ss_pred HHHHHHHcCCCcccEEEe---------ccCCCCCCHHHHHHHHHHHHHcC---CccEE---EeCCCCHHHHHHHHhc---
Q 026625 115 CEASLRRLDVEYIDLYYQ---------HRVDTSVPIEETIGEMKKLVEEG---KIKYI---GLSEASPDTIRRAHAV--- 176 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~l---------h~~~~~~~~~~~~~~l~~l~~~G---~ir~i---GvSn~~~~~l~~~~~~--- 176 (235)
.+..|+.|--...+++.. .........++.++.++.+++.| .++.- |+ .-+.+++.+.+..
T Consensus 152 ~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lre 230 (290)
T PRK12928 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRA 230 (290)
T ss_pred CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHh
Q ss_pred CCeeEEee-ccCc-----------ccccccchHHHHHHHhCCeEEecccC
Q 026625 177 HPITAVQL-EWSL-----------WARDIENEIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 177 ~~~~~~q~-~~n~-----------~~~~~~~~l~~~~~~~gi~v~a~spl 214 (235)
.+++.+.+ +|.. ........+-+.+.+.|...++..||
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 141
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=50.56 E-value=2e+02 Score=26.23 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=60.7
Q ss_pred eCCCCCCCCcHHHHHHHHHhc----CC-CCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC---CC--cccE
Q 026625 60 DTADKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD---VE--YIDL 129 (235)
Q Consensus 60 DtA~~Yg~g~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg---~~--~iDl 129 (235)
+..-.|| .|+.|-++|++ .+ .+=++|.|-.... .--+.+...+++.-++++ .. .+.+
T Consensus 69 E~d~VfG---g~~~L~~ai~~~~~~~~~p~~i~v~ttc~~e----------iiGDDi~~v~~~~~~~~~~~~~p~~~~~i 135 (461)
T TIGR02931 69 EDGAVFG---ALDRVEEAVDVLLTRYPDVKVVPIITTCSTE----------IIGDDVDGLISKLNEELLKEKFPDREVHL 135 (461)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHH----------hhhcCHHHHHHHHHhhhcccccCCCCCeE
Confidence 3335677 57778888887 32 2334555544321 112334444444444442 11 3578
Q ss_pred EEeccCCCCCCH----HHHHHHHHH-HHH----cCCccEEEeCC--CCHHHHHHHHhcCCeeEEee
Q 026625 130 YYQHRVDTSVPI----EETIGEMKK-LVE----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 130 ~~lh~~~~~~~~----~~~~~~l~~-l~~----~G~ir~iGvSn--~~~~~l~~~~~~~~~~~~q~ 184 (235)
+.++.|+..... +.+++++-+ +.. .++|.-||-.+ .+.+.+.++++...+.++.+
T Consensus 136 i~v~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l 201 (461)
T TIGR02931 136 IPIHTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANVL 201 (461)
T ss_pred EEeeCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEEe
Confidence 999988765432 233433332 222 46688888543 24567777777766666543
No 142
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=50.34 E-value=51 Score=28.94 Aligned_cols=87 Identities=10% Similarity=0.198 Sum_probs=55.1
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHH-cCC---ccEEEeCC--CCHHHHHHH---HhcCCeeEEeeccCcc
Q 026625 130 YYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPDTIRRA---HAVHPITAVQLEWSLW 189 (235)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvSn--~~~~~l~~~---~~~~~~~~~q~~~n~~ 189 (235)
+-||.+++. .+++++++++.++.+ .|+ |+++=+.. -+.+++.++ +...++.++-++||.+
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 678988642 236788888887654 342 44554433 334555544 4445567888999986
Q ss_pred ccc----cc----chHHHHHHHhCCeEEecccCcc
Q 026625 190 ARD----IE----NEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 190 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 216 (235)
... +. ..+.++.+++|+.+......+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 531 11 3456677788999999888743
No 143
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=50.30 E-value=98 Score=27.82 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCCeE-eCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCC-----CcccccCCCHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-----FTSVIVKGTPEYVRS 113 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~-----~~~~~~~~~~~~i~~ 113 (235)
+.++-.+-++.|++.|...+ |-|. .| .-..+-+++-+ ...+-|.|= ...... ......+.+++.+.+
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~--~s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIE--ASPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 44444566899999998744 6553 33 33333333321 111222221 000000 001123466777777
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 026625 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 170 (235)
.+++..+ +-+|++-+|.- -..+.++.++++|+ ..|+-+-.-.-+
T Consensus 148 ~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~ 191 (431)
T PRK13352 148 VIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFL 191 (431)
T ss_pred HHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHH
Confidence 6665554 56899999975 35678888888885 456655443333
No 144
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.92 E-value=1.6e+02 Score=25.05 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=53.8
Q ss_pred CCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC----------CHHHHHHHHHHHH
Q 026625 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV----------PIEETIGEMKKLV 152 (235)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~----------~~~~~~~~l~~l~ 152 (235)
.+++.|..|+....... ...+.+...+ +-+.|+..|+|+|+ ++...... .....++.+.+++
T Consensus 206 g~d~~i~vris~~~~~~----~g~~~~e~~~-la~~l~~~G~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir 277 (327)
T cd02803 206 GPDFPVGVRLSADDFVP----GGLTLEEAIE-IAKALEEAGVDALH---VSGGSYESPPPIIPPPYVPEGYFLELAEKIK 277 (327)
T ss_pred CCCceEEEEechhccCC----CCCCHHHHHH-HHHHHHHcCCCEEE---eCCCCCcccccccCCCCCCcchhHHHHHHHH
Confidence 45788888887543110 0123444333 33456677865554 34332111 1123455666666
Q ss_pred HcCCccEEEeCCC-CHHHHHHHHhcCCeeEEeec
Q 026625 153 EEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 153 ~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 185 (235)
+.=.+--++..+. ++++++++++....+.+++-
T Consensus 278 ~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 278 KAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 6556667777665 48888888887677777763
No 145
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=49.77 E-value=1.5e+02 Score=24.72 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC---CCCCCC----cHHHHHHHHHhcCCCC-CEEEEeccccccCCCcccccCCCHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTA---DKYGPY----TNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~~Yg~g----~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
+.++..+..+.+.+.|+..|+.- +....+ ...+.+.+.++.+.+. ++-|+.|+.... +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 56788899999999999998853 222211 2345555555542221 577888887542 34444
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCC-------------C---CC------HHHHHHHHHHHHHcC--CccEEEeCCC-C
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDT-------------S---VP------IEETIGEMKKLVEEG--KIKYIGLSEA-S 166 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~-------------~---~~------~~~~~~~l~~l~~~G--~ir~iGvSn~-~ 166 (235)
.+.++ .++..|.| .+.+|+-.. . .. ..-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a~-~l~~~Gad---~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGAD---GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCC---EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44443 45677754 444443210 0 00 112467777777653 6888888775 4
Q ss_pred HHHHHHHHhcCCeeEEeec
Q 026625 167 PDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~~ 185 (235)
.+++.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 78888888743 6777764
No 146
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.70 E-value=67 Score=25.79 Aligned_cols=87 Identities=10% Similarity=0.178 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcC-CeeEEee
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQL 184 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~ 184 (235)
+++...+.+ +.|-+-|+..+.+=+= ..+..+.+++++++.-=-.||..+ .+.++++++++.. .| +
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~~--------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~F--i-- 80 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITLR--------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRF--I-- 80 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCC--------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCE--E--
Confidence 344444433 4555667665555331 124556666666553334588865 5788898888763 33 1
Q ss_pred ccCcccccccchHHHHHHHhCCeEEe
Q 026625 185 EWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 185 ~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
.+ +....+++++|+++||.++.
T Consensus 81 -vS---P~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 -VS---PGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred -EC---CCCCHHHHHHHHHcCCCEeC
Confidence 11 22347899999999998873
No 147
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=49.66 E-value=1.7e+02 Score=25.09 Aligned_cols=134 Identities=14% Similarity=0.073 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC---------CCCCCc----HHHHHHHHHhcC-CCCCEEEEeccccccCCCcccccC
Q 026625 40 SEEDGISIIKHAFSKGITFFDTAD---------KYGPYT----NEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVK 105 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~g~----sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~ 105 (235)
+.++..++.+.+.+.|+..||.-- .|+ |. .-+.+.+.++.+ .+-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-------
Confidence 678888888999999999888631 122 12 234555555542 12236678887532210
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCeeEE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAV 182 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~ 182 (235)
..... ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+.-++... .+++++.++++....+.+
T Consensus 145 -~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 145 -AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred -CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 11112 234445667775 55566754321111 23578888888775677777765 467888888876667777
Q ss_pred eecc
Q 026625 183 QLEW 186 (235)
Q Consensus 183 q~~~ 186 (235)
++--
T Consensus 220 migR 223 (319)
T TIGR00737 220 MIGR 223 (319)
T ss_pred EECh
Confidence 7653
No 148
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=49.49 E-value=1.8e+02 Score=25.50 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEE
Q 026625 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAV 182 (235)
Q Consensus 104 ~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~ 182 (235)
..++.+...+-++. |.++|+++|++ .....-+.-++.++.+.+.+. .+..+++..+.+.++.+.+. .++.+
T Consensus 18 ~~~s~~~k~~ia~~-L~~~Gv~~IEv------G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i 89 (365)
T TIGR02660 18 VAFTAAEKLAIARA-LDEAGVDELEV------GIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAV 89 (365)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEE------eCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEE
Q ss_pred eeccCcccccccc--------------hHHHHHHHhCCeEE
Q 026625 183 QLEWSLWARDIEN--------------EIVPLCRELGIGIV 209 (235)
Q Consensus 183 q~~~n~~~~~~~~--------------~l~~~~~~~gi~v~ 209 (235)
.+-.+.-+..... +.+++++++|..+.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
No 149
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.48 E-value=1.8e+02 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
++.++..++++..-+.|+..|+....
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p 44 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFP 44 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57788889999999999999998643
No 150
>PTZ00413 lipoate synthase; Provisional
Probab=49.46 E-value=1.9e+02 Score=25.81 Aligned_cols=159 Identities=15% Similarity=0.252 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCC----CCcHHHHHHHHHhcCCC--CCEEEEeccccccCCCcccccCCCHHHH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYG----PYTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----~g~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
..|.++..++-+++.+.|++|+=.+.... +|.++ .+.++++.+.. .++.|..=++... .+.+.+
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~-~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l 245 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGAS-HVARCVELIKESNPELLLEALVGDFH---------GDLKSV 245 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHH-HHHHHHHHHHccCCCCeEEEcCCccc---------cCHHHH
Confidence 36889998998999999998774444433 22233 33456665432 3455555544221 123222
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHc--CCccE-----EEeCCCCHHHHHHH
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIKY-----IGLSEASPDTIRRA 173 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~--G~ir~-----iGvSn~~~~~l~~~ 173 (235)
.. |..-| +|.| -|+.+. ...+++.|+.|+..++. +.|.. +|+.. +.+++.++
T Consensus 246 ~~-----L~eAG---~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~ 315 (398)
T PTZ00413 246 EK-----LANSP---LSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQT 315 (398)
T ss_pred HH-----HHhcC---CCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHH
Confidence 22 22333 4443 355422 13577889999988874 33322 34333 33444443
Q ss_pred Hh---cCCeeEEee-cc-Cc------ccc--ccc--chHHHHHHHhCCeEEecccCcc
Q 026625 174 HA---VHPITAVQL-EW-SL------WAR--DIE--NEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 174 ~~---~~~~~~~q~-~~-n~------~~~--~~~--~~l~~~~~~~gi~v~a~spl~~ 216 (235)
+. ...++++.+ +| .+ ..+ .++ +.+-+++.+.|...++..||-+
T Consensus 316 m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 316 LRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 32 244444444 22 00 011 011 5667788899999999999854
No 151
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=49.44 E-value=1.2e+02 Score=27.59 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEe-ccCC----------CCC-CHH---HHHH-HHHHHHHcCCccEEEeCCCCH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVD----------TSV-PIE---ETIG-EMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~l-h~~~----------~~~-~~~---~~~~-~l~~l~~~G~ir~iGvSn~~~ 167 (235)
.+.+.+.+.++..+ .|+.+++.+|.+ +.|. ... ..+ +.++ +.+.|.+.|. ..++++||..
T Consensus 215 qt~e~~~~tl~~~~-~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVA-ELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 46788888887554 489999999877 2221 001 122 2233 4445556675 5699999874
No 152
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=49.21 E-value=76 Score=25.81 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=26.9
Q ss_pred eeEEeeccCcccccccchHHHHHHHhCCeEEec
Q 026625 179 ITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 179 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (235)
+.+.==+||+++.....++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 334444799999888899999999999999864
No 153
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=49.20 E-value=2e+02 Score=25.85 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
+.++..+....+++.|++.|=.--.-. -......=+++++.-.+++.|.--... ..+++...+ .+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~-~~~d~~~v~avRe~vG~~~~L~vDaN~----------~w~~~~A~~----~~ 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGAD-LEDDIRRCRLAREVIGPDNKLMIDANQ----------RWDVPEAIE----WV 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCC-HHHHHHHHHHHHHhcCCCCeEEEECCC----------CCCHHHHHH----HH
Confidence 446666777778889999875421111 011122223455421223333222211 123433322 22
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC----CccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-c
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG----KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-E 194 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G----~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~ 194 (235)
++|. .+++.++..|-+. +-++.+.+|++.- .=-..|=|.++...+.++++...++++|+...-.-.-. -
T Consensus 261 ~~L~--~~~l~~iEEP~~~----~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSP----DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCC----CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3332 2455667666433 3456666666653 22233446678899999998888899999866543211 2
Q ss_pred chHHHHHHHhCCeEEecc
Q 026625 195 NEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a~s 212 (235)
..+.+.|+++|+.+...+
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 678999999999998764
No 154
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.14 E-value=1.8e+02 Score=25.42 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=60.7
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC----CccEEEeC--CCCHHHHHHHHh---cCCeeEEeeccCcc
Q 026625 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEG----KIKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSLW 189 (235)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvS--n~~~~~l~~~~~---~~~~~~~q~~~n~~ 189 (235)
+-+|.+++. .+++++++++.+..+.+ +++++=+. |-+.++++++.+ ..+..++-++||..
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568888542 23567788887776654 23455444 445566655554 35567888999987
Q ss_pred ccc----cc----chHHHHHHHhCCeEEecccC------ccccCCCCC
Q 026625 190 ARD----IE----NEIVPLCRELGIGIVPYCPL------GRGFFGGKA 223 (235)
Q Consensus 190 ~~~----~~----~~l~~~~~~~gi~v~a~spl------~~G~L~~~~ 223 (235)
... +. ..+.+.++++||.+....+. |.|.|..+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 338 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGKL 338 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCcccccc
Confidence 531 11 44677788999999999887 456776653
No 155
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.79 E-value=1.6e+02 Score=24.67 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTAD 63 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (235)
.+.++..++.....+.|+..|+...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccC
Confidence 5678888888888899999999985
No 156
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=48.60 E-value=2.1e+02 Score=25.87 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHH-HHHHHHcCCccEEEeCC---------CCHHHHHHHHhc
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSE---------ASPDTIRRAHAV 176 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvSn---------~~~~~l~~~~~~ 176 (235)
+.+.+.+.++..-+..+ +.-++|-.-++-..-.+.++. ++.|.+--.|+.|.+.+ .+ +.+.+.++.
T Consensus 139 s~eei~~~i~yI~~~p~---I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT-~ell~~Lk~ 214 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQ---IRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRIT-DELVAILKK 214 (417)
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccC-HHHHHHHHh
Confidence 44555555554444333 333555555554333445555 56777766677665533 22 344444544
Q ss_pred CCeeEEeeccCccccccc--chHHHHHHHhCCeEEecccCcccc
Q 026625 177 HPITAVQLEWSLWARDIE--NEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
..+.++++++|--.--.+ .+.++.+++.||.+..-++|..|.
T Consensus 215 ~~~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGV 258 (417)
T TIGR03820 215 HHPVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAGV 258 (417)
T ss_pred cCCeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECCc
Confidence 556788888875432111 456777788899999999999884
No 157
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.33 E-value=1.9e+02 Score=25.43 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=56.4
Q ss_pred EeccCCCC-----------CCHHHHHHHHHHHH-HcCC---ccEEEeCC--CCHHHHHHHH---hcCCeeEEeeccCccc
Q 026625 131 YQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPDTIRRAH---AVHPITAVQLEWSLWA 190 (235)
Q Consensus 131 ~lh~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvSn--~~~~~l~~~~---~~~~~~~~q~~~n~~~ 190 (235)
-||.+++. .+++++++++.++. +.|+ |+++=+.. -+.++++++. +..+..++-++||.+.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 38988653 23567888887665 4453 66666654 3456655554 3456788999999876
Q ss_pred cc----cc----chHHHHHHHhCCeEEecccCccc
Q 026625 191 RD----IE----NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 191 ~~----~~----~~l~~~~~~~gi~v~a~spl~~G 217 (235)
.. +. ..+.+..+++|+.+....+.+..
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~d 339 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLD 339 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 31 11 33566677889999988877543
No 158
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=48.10 E-value=2.1e+02 Score=25.90 Aligned_cols=85 Identities=8% Similarity=0.082 Sum_probs=55.5
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCe
Q 026625 129 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIG 207 (235)
Q Consensus 129 l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 207 (235)
+.++..|-+..+..+-++.+.+|++.-.|. ..|=+.++..++..+++..-++++|......--..-..+.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 345665543221112377788887765544 3355677889999999888888888875321111126789999999999
Q ss_pred EEeccc
Q 026625 208 IVPYCP 213 (235)
Q Consensus 208 v~a~sp 213 (235)
+..++.
T Consensus 332 v~~h~~ 337 (441)
T TIGR03247 332 WGSHSN 337 (441)
T ss_pred EEEeCC
Confidence 888654
No 159
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=48.06 E-value=1.5e+02 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCCeEeCC
Q 026625 41 EEDGISIIKHAFSKGITFFDTA 62 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA 62 (235)
+|.....++.|++.|++.|.+-
T Consensus 14 pENTl~Af~~A~~~G~d~iE~D 35 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFEVD 35 (237)
T ss_pred CccHHHHHHHHHHhCCCEEEEE
Confidence 4777899999999999988554
No 160
>PRK05414 urocanate hydratase; Provisional
Probab=48.06 E-value=56 Score=30.12 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCeE--eCCCCCCC--------CcHHHHHHHHHhcC---CCCCEEEEeccccccCCCc---------ccc
Q 026625 46 SIIKHAFSKGITFF--DTADKYGP--------YTNEILLGKALKEL---PRENIQVATKFGFVELGFT---------SVI 103 (235)
Q Consensus 46 ~~l~~A~~~Gi~~~--DtA~~Yg~--------g~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~---------~~~ 103 (235)
+-+...-+.|+..+ =||-.|.. |.-|.++.-+=+.. .+-.+++++-++.-....+ ...
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 34456667787765 35554432 55666654333322 3567899988876553311 022
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc---CCee
Q 026625 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPIT 180 (235)
Q Consensus 104 ~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~ 180 (235)
.+.+++.|+ +|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.++++.+. .++.
T Consensus 196 vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlv 261 (556)
T PRK05414 196 VEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLV 261 (556)
T ss_pred EEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 334455444 46778898874 245889999999999999999999998888888888876 3344
Q ss_pred EEeecc
Q 026625 181 AVQLEW 186 (235)
Q Consensus 181 ~~q~~~ 186 (235)
.-|..+
T Consensus 262 tDQTSa 267 (556)
T PRK05414 262 TDQTSA 267 (556)
T ss_pred CcCccc
Confidence 445543
No 161
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=47.82 E-value=1.8e+02 Score=25.03 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=63.8
Q ss_pred HHHHHHcCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHHcCCccE-EEeCCC---CHHHHHHHHhcC-CeeEEeec
Q 026625 116 EASLRRLDVEYIDLYYQHRVDTS-----VPIEETIGEMKKLVEEGKIKY-IGLSEA---SPDTIRRAHAVH-PITAVQLE 185 (235)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~~G~ir~-iGvSn~---~~~~l~~~~~~~-~~~~~q~~ 185 (235)
+.+.++.| .|++-+|-.+.+ .+..++.+.|+++.+.=+|-. ||=|.. +++-++++.+.. .-.|.-..
T Consensus 157 rk~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 34556777 477888876443 457789999999888766554 566654 567788877652 22233333
Q ss_pred cCcccccccchHHHHHHHhCCeEEecccCc
Q 026625 186 WSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (235)
Q Consensus 186 ~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 215 (235)
-|+- .+. ..+.+.+.++|=.|++|+++.
T Consensus 234 anld-lDy-~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 234 ANLD-LDY-ERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cccc-cCH-HHHHHHHHhcCceEEEeeccC
Confidence 3331 111 678999999999999999875
No 162
>COG0218 Predicted GTPase [General function prediction only]
Probab=47.76 E-value=1.5e+02 Score=23.90 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHH------cCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 41 EEDGISIIKHAFS------KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 41 ~~~~~~~l~~A~~------~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.++..+++...++ ..+-.+|.-..-- ..++.+=++|......=+++.||.--. ......+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DKi-----------~~~~~~k~ 156 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADKL-----------KKSERNKQ 156 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEccccC-----------ChhHHHHH
Confidence 3455566666554 3456788765543 467888888887777788999997643 35566777
Q ss_pred HHHHHHHcCCCcccE--EEeccCCCCCCHHHHHHHHHHHHHc
Q 026625 115 CEASLRRLDVEYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 154 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 154 (235)
+....+.|+.+..|- +.+........++++++.+.+....
T Consensus 157 l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 157 LNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 888888888776665 4444444445678888888776543
No 163
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=47.05 E-value=1.2e+02 Score=25.80 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHH-----HHHHHHHHHcCCccEEEeCCCCHH-------HHHHHHhcCCeeEEeecc
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEET-----IGEMKKLVEEGKIKYIGLSEASPD-------TIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvSn~~~~-------~l~~~~~~~~~~~~q~~~ 186 (235)
++-+.-.++|+..+..+.......+. -+.+.+..++--=|++|+.+.++. ++++......++-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 66777788999888841111112222 257788888878889999987754 4444444455554554
Q ss_pred Cccccc--c-c---chHHHHHHHhCCeEEecccC
Q 026625 187 SLWARD--I-E---NEIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 187 n~~~~~--~-~---~~l~~~~~~~gi~v~a~spl 214 (235)
+...+. . . ..++++|+++|+.|+-++..
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 222221 1 1 45899999999999986544
No 164
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=46.87 E-value=2.1e+02 Score=25.40 Aligned_cols=146 Identities=12% Similarity=-0.015 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc-C-CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~-~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
+.++..+.+..+++.|++.|=.--.-.+.......=+++++ . +.-++.|=.-.+ .+.+... +
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~------------w~~~~A~----~ 223 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGR------------FDLETAI----A 223 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCC------------CCHHHHH----H
Confidence 45666677778889999987542111000111222334444 2 222333322211 2333222 2
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCe----eEEeeccCccccc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPI----TAVQLEWSLWARD 192 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~----~~~q~~~n~~~~~ 192 (235)
.++.|. .+++.++..|-+. +-++.+.+|++...|. ..|=|.++..++.++++.... +++|+..+-.-.-
T Consensus 224 ~~~~l~--~~~~~~iEeP~~~----~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGi 297 (385)
T cd03326 224 YAKALA--PYGLRWYEEPGDP----LDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGL 297 (385)
T ss_pred HHHHhh--CcCCCEEECCCCc----cCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCH
Confidence 333332 3466677766432 3467777888775554 455577889999999887655 8999886643321
Q ss_pred c-cchHHHHHHHhCCe
Q 026625 193 I-ENEIVPLCRELGIG 207 (235)
Q Consensus 193 ~-~~~l~~~~~~~gi~ 207 (235)
. -..+.+.|+.+|+.
T Consensus 298 t~~~kia~lA~a~gi~ 313 (385)
T cd03326 298 PEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 1 26789999999997
No 165
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.64 E-value=80 Score=25.42 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcC-CeeEEee
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQL 184 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~ 184 (235)
+++...+ +-+.|-.-|+..+.+=+ +. ...++.+++++++.-=-.||..+ .+.++++.+++.. .| +-
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~F--iv- 85 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQF--IV- 85 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCE--EE-
Confidence 3444443 34566677776555533 11 24666677776654335688866 5788998888763 33 21
Q ss_pred ccCcccccccchHHHHHHHhCCeEEe
Q 026625 185 EWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 185 ~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
+ +....+++++|+++|+.++.
T Consensus 86 --s---P~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 --S---PGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --C---CCCCHHHHHHHHHcCCcEEC
Confidence 1 22247899999999998874
No 166
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.53 E-value=1.9e+02 Score=25.35 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=56.5
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEEeC--CCCHHHHHHH---HhcCCeeEEeeccCcc
Q 026625 130 YYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPDTIRRA---HAVHPITAVQLEWSLW 189 (235)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--n~~~~~l~~~---~~~~~~~~~q~~~n~~ 189 (235)
+.||.|+.. .+++++++++.++.++ |+ ++++=+. |-+.++++++ +...+..++-++||..
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 678888652 2467889999987754 32 3355443 3444555444 4445577899999974
Q ss_pred ccc---cc----chHHHHHHHhCCeEEecccCccc
Q 026625 190 ARD---IE----NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 190 ~~~---~~----~~l~~~~~~~gi~v~a~spl~~G 217 (235)
... +. ..+.+.++++||.+......+..
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~d 330 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKD 330 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcC
Confidence 321 11 44677788889999998877543
No 167
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.47 E-value=2e+02 Score=25.05 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTA 62 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (235)
++.++..++++...++|+..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 577899999999999999999995
No 168
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=46.39 E-value=85 Score=25.09 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=51.9
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCc-ccccccchHHHHHHH
Q 026625 125 EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSL-WARDIENEIVPLCRE 203 (235)
Q Consensus 125 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~-~~~~~~~~l~~~~~~ 203 (235)
....+..+.+.. .-+...+|.+.|. ..+-+.-.+.+.|.++++-....++-..... -.......+++.|++
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 335677766654 2223455666676 4566666678888888875554333333221 111123779999999
Q ss_pred hCCeEEecccCcccc
Q 026625 204 LGIGIVPYCPLGRGF 218 (235)
Q Consensus 204 ~gi~v~a~spl~~G~ 218 (235)
.||..+.+|.++...
T Consensus 93 agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 93 AGVKHFVPSSFGADY 107 (233)
T ss_dssp HT-SEEEESEESSGT
T ss_pred cccceEEEEEecccc
Confidence 999999999887665
No 169
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=46.32 E-value=2.1e+02 Score=25.19 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=70.5
Q ss_pred HHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC----H
Q 026625 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP----I 141 (235)
Q Consensus 70 sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~----~ 141 (235)
.|+.+-+++++ ..++-++|.|-....- --+.+..-+++.-++.+. .++.+|.+.-... .
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~i----------IGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~ 124 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEI----------IGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGY 124 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHH----------TTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHH----------hCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchH
Confidence 56666677766 3446667766543322 112233334444445553 8888888866322 3
Q ss_pred HHHHHHHHHHH-H------cCCccEEEeCCCC---HHHHHHHHhcCCeeEEeec----------------cCccccccc-
Q 026625 142 EETIGEMKKLV-E------EGKIKYIGLSEAS---PDTIRRAHAVHPITAVQLE----------------WSLWARDIE- 194 (235)
Q Consensus 142 ~~~~~~l~~l~-~------~G~ir~iGvSn~~---~~~l~~~~~~~~~~~~q~~----------------~n~~~~~~~- 194 (235)
+.++++|-+.. + .+.|.-+|.++.. .+++.++++...+.++... +|+......
T Consensus 125 ~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~ 204 (398)
T PF00148_consen 125 DAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGG 204 (398)
T ss_dssp HHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHH
T ss_pred HHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchh
Confidence 45566555544 2 3678888999766 3566677776666544443 233322211
Q ss_pred chHHHHHHHh-CCeEEe-cccC
Q 026625 195 NEIVPLCREL-GIGIVP-YCPL 214 (235)
Q Consensus 195 ~~l~~~~~~~-gi~v~a-~spl 214 (235)
..+.++.+++ |++++. -.|+
T Consensus 205 ~~~a~~L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 205 PYAAEWLEERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHHHHHHHHHT-EEEEEC-SB
T ss_pred hHHHHHHHHHhCCCeeeccccc
Confidence 2255666654 999988 4444
No 170
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=45.88 E-value=61 Score=29.79 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCeE--eCCCCCCC--------CcHHHHHHHHHhc---CCCCCEEEEeccccccCCCc---------ccc
Q 026625 46 SIIKHAFSKGITFF--DTADKYGP--------YTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVI 103 (235)
Q Consensus 46 ~~l~~A~~~Gi~~~--DtA~~Yg~--------g~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~---------~~~ 103 (235)
+-+...-+.|+..+ =||-.|.. |.-|.++.-+=+. .-+-.+++++-++.-....+ ...
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 34456667788765 35544422 5566665433332 13567888888876553311 022
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc---CCee
Q 026625 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPIT 180 (235)
Q Consensus 104 ~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~ 180 (235)
.+.+++.|+ +|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.++++.+. .++.
T Consensus 187 vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 187 VEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred EEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCc
Confidence 334455444 46678888864 245889999999999999999999998888888888875 3344
Q ss_pred EEeecc
Q 026625 181 AVQLEW 186 (235)
Q Consensus 181 ~~q~~~ 186 (235)
.-|..+
T Consensus 253 tDQTSa 258 (545)
T TIGR01228 253 TDQTSA 258 (545)
T ss_pred CCCCcc
Confidence 445443
No 171
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=45.86 E-value=1.1e+02 Score=28.08 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCHHHHHHHHH
Q 026625 71 EILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMK 149 (235)
Q Consensus 71 E~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-~~~~~~~~~~l~ 149 (235)
-+-+|.+|+ .+.+++|+-.+...+ +....+..-+++.+++-++.- .-+-+.--+. -.+...+...+.
T Consensus 341 ~~dlG~~L~--~~~~l~VsINl~a~D---------l~s~rli~~~~~~l~~~~v~p-qQI~lElTER~f~D~~~~~~iI~ 408 (524)
T COG4943 341 FRDLGDLLR--QHRDLHVSINLSASD---------LASPRLIDRLNRKLAQYQVRP-QQIALELTERTFADPKKMTPIIL 408 (524)
T ss_pred HHHhHHHHH--hCcceEEEEeeeehh---------hcCchHHHHHHHHHHhcCcCh-HHheeehhhhhhcCchhhhHHHH
Confidence 356677776 566788877776543 223345556666666666531 1111111111 123446788899
Q ss_pred HHHHcCCccEE---EeCCCCHHHHHHHHhcCCeeEEeec--------cCcccccccchHHHHHHHhCCeEEec-------
Q 026625 150 KLVEEGKIKYI---GLSEASPDTIRRAHAVHPITAVQLE--------WSLWARDIENEIVPLCRELGIGIVPY------- 211 (235)
Q Consensus 150 ~l~~~G~ir~i---GvSn~~~~~l~~~~~~~~~~~~q~~--------~n~~~~~~~~~l~~~~~~~gi~v~a~------- 211 (235)
++++.|.=-+| |..--+..-+..+ ++|..-+. ++......-+.+++.|+++|+.+++=
T Consensus 409 r~ReaG~~IyIDDFGTGYSnL~YLq~L----~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ 484 (524)
T COG4943 409 RLREAGHEIYIDDFGTGYSNLHYLQSL----PVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQ 484 (524)
T ss_pred HHHhcCCeEEEccCcCcchhHHHHhhC----CccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHH
Confidence 99999984443 2211112222221 22222222 22222222367888888888888863
Q ss_pred --------ccCccccCCCCCCC
Q 026625 212 --------CPLGRGFFGGKAVV 225 (235)
Q Consensus 212 --------spl~~G~L~~~~~~ 225 (235)
.++++|-|.+|+.|
T Consensus 485 ~~~LR~~Gv~~gQGW~fskaLp 506 (524)
T COG4943 485 VDWLRKRGVHYGQGWLFSKALP 506 (524)
T ss_pred HHHHHHcCCccccccccCCCCC
Confidence 36788988888654
No 172
>TIGR00035 asp_race aspartate racemase.
Probab=45.66 E-value=1.3e+02 Score=24.30 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC------------CHHHHHHHHHHHHHcCCccEEEeCCCCHHH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------------PIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~------------~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 169 (235)
.+.+.+++-++..-.+.+.++++.+.+++|+... ....+.+..+.|.+.| +..|-++..+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 3456677777777778889999999999985321 1234566666666654 7888887766543
No 173
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=45.56 E-value=2e+02 Score=24.82 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=56.3
Q ss_pred HHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC--C--CCH--HHHHHHHHH
Q 026625 77 ALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT--S--VPI--EETIGEMKK 150 (235)
Q Consensus 77 al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~--~~~--~~~~~~l~~ 150 (235)
++++.-.+++.|..|+....... ...+.+...+ +-+.|+..|+|+|+ +|.... . .+. ...++.+++
T Consensus 213 aIR~~vG~d~~v~vri~~~~~~~----~g~~~~e~~~-ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 213 AVRAVWPEDKPLFVRISATDWVE----GGWDLEDSVE-LAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHcCCCceEEEEEcccccCC----CCCCHHHHHH-HHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHH
Confidence 33333345778888887532111 1123333332 33456677765554 442110 0 111 123466667
Q ss_pred HHHcCCccEEEeCCC-CHHHHHHHHhcCCeeEEeec
Q 026625 151 LVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 151 l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~ 185 (235)
+++.=.|--++..+. ++++.+++++....+.+++-
T Consensus 285 ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 285 IRQEAGIPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred HHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 777666777777775 78889999887777777763
No 174
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.50 E-value=1.7e+02 Score=25.97 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=59.8
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCC---ccEEEeCC--CCHHH---HHHHHhcC---CeeEEeec
Q 026625 129 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPDT---IRRAHAVH---PITAVQLE 185 (235)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvSn--~~~~~---l~~~~~~~---~~~~~q~~ 185 (235)
.+-||.+++. .+++++++++.++.+ .|+ |+++=+.. -+.++ +.+++... ...++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678988652 347788999888774 464 56665553 34444 44444444 56889999
Q ss_pred cCccccc----c-c---chHHHHHHHhCCeEEecccCccc
Q 026625 186 WSLWARD----I-E---NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 186 ~n~~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~G 217 (235)
||.+... + . ..+.+..+++||.+....+.+..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9996531 1 1 45788889999999998887543
No 175
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=45.46 E-value=1.1e+02 Score=26.28 Aligned_cols=133 Identities=17% Similarity=0.107 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCC----------CCCCCC--cHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCC
Q 026625 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~g--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 106 (235)
+++...++.+.+.+.|+..||-- ..||.+ ..-..+.+.++... .-++-|+.|+..... .
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~--------~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD--------D 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccc--------c
Confidence 67888888888888899999953 334432 23345555555411 123666777654331 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCeeEEe
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q 183 (235)
+.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+++.+.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 444667777 688999987554322 46789999888886677666554 5678888887765555555
Q ss_pred e
Q 026625 184 L 184 (235)
Q Consensus 184 ~ 184 (235)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 4
No 176
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=45.26 E-value=1.5e+02 Score=27.00 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHc-CCccE---------EEeCCCCHHH----
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEE-GKIKY---------IGLSEASPDT---- 169 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~-G~ir~---------iGvSn~~~~~---- 169 (235)
++.+...+ +-..|.++|++.|++.-=...+. ...-+..|+.++.+++. ..++. +|.+++.-+-
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 44444444 44568888999999830000010 00112367788877765 23432 4555554333
Q ss_pred HHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEe
Q 026625 170 IRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 170 l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
++++.+ ..++++.+-.++-+...-...+++++++|..+.+
T Consensus 102 v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 102 VQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 333333 3556666655544333236689999999987653
No 177
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=45.14 E-value=2.1e+02 Score=25.02 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcC---CCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKG---ITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
.+.++..+++....+.- +-.+|..+..+. -...+-+.+. ...-++|.+|.-.... ....+.+.+-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHHH
Confidence 46677777776665322 346686554442 1122222332 4556789999865321 12355566666
Q ss_pred HHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHH
Q 026625 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (235)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l 170 (235)
++-++..|....|++.+. .-....++++++.+.++.+.+.|-.+|.+|..-..+
T Consensus 117 ~~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 666777776544666554 334456888999998887767899999999876443
No 178
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=45.11 E-value=99 Score=27.49 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhC-CeEEecccCccc
Q 026625 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG-IGIVPYCPLGRG 217 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g-i~v~a~spl~~G 217 (235)
...+.+.++++...--|...=+...+.+.++++++. .++.++..+-|+...-.+ ..+.+.|+++| +.+++=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 457888888766665566544555678888888764 567788888888776555 78999999999 999998888877
Q ss_pred cCCCC
Q 026625 218 FFGGK 222 (235)
Q Consensus 218 ~L~~~ 222 (235)
.+...
T Consensus 184 ~~~~p 188 (386)
T PF01053_consen 184 YNQNP 188 (386)
T ss_dssp TTC-G
T ss_pred eeecc
Confidence 66554
No 179
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=45.00 E-value=82 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 173 (235)
.+.+...+.+.+.|+.||++ .|-+ .......+..-+++++|+++|++ |...|+ .+++++.
T Consensus 48 Rs~~~~~~~I~e~L~wLGI~-~De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~Ct--~eel~~~ 107 (445)
T PRK12558 48 RSKQEYADAIAEDLKWLGIN-WDRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYET--PEELELK 107 (445)
T ss_pred cchHHHHHHHHHHHHHcCCC-CCcc----ccHHHHHHHHHHHHHHHHHCCCE-EEecCc--hHHHHHH
Confidence 34577888999999999997 4742 22223345568889999999995 666655 5565544
No 180
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.82 E-value=28 Score=30.00 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEIL 73 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~ 73 (235)
..+.++.+++++.|-+.||+.|=-=+.-| ++...
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~PG--H~~a~ 97 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDVPG--HASAI 97 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecCcc--chHHH
Confidence 36899999999999999998773333333 45543
No 181
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=44.77 E-value=1.6e+02 Score=24.70 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCC--------------------------cccEEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEe
Q 026625 112 RSCCEASLRRLDVE--------------------------YIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGL 162 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~--------------------------~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGv 162 (235)
++.++++|++.|.. ..|+++|.-|....+. .++++.|.+|+++|+ .|=+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~ 194 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLM 194 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEE
Confidence 56777777777743 5788999888776554 468999999999976 6777
Q ss_pred CCCCHHHHHHHH
Q 026625 163 SEASPDTIRRAH 174 (235)
Q Consensus 163 Sn~~~~~l~~~~ 174 (235)
.+|+...+.+..
T Consensus 195 vtHDL~~v~~~~ 206 (254)
T COG1121 195 VTHDLGLVMAYF 206 (254)
T ss_pred EeCCcHHhHhhC
Confidence 888877766543
No 182
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=44.67 E-value=2.3e+02 Score=25.21 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCC--CcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
++..++++.|++.|+.-|=+...|.. ..++..+-+.++...+-+..|....-... ......+.+.++.+
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a- 237 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLG- 237 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHH-
Confidence 45567788889999988866655643 45777777777654444555665543221 01123344444333
Q ss_pred HHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCccEEEeCCCC---HHHHHHHHhc
Q 026625 120 RRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHAV 176 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~~ 176 (235)
++.|. -+...|.-... ....++++.+++.+++|.--...++.+. ...+.++++.
T Consensus 238 ~~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 238 RETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred HHhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 33453 34555654322 2355677888888888854444455543 3455555543
No 183
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=44.46 E-value=65 Score=28.74 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCC--cc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chHHHHHHHhCCeEEec
Q 026625 144 TIGEMKKLVEEGK--IK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPY 211 (235)
Q Consensus 144 ~~~~l~~l~~~G~--ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~ 211 (235)
-++.+.+|++.-. |. .-|=+.++...++.+++...++++|+...-.-.-.+ ..+.+.|+.+|+.+...
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 4677777877644 22 236778889999999998889999998765432112 67899999999998764
No 184
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.44 E-value=60 Score=30.37 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHhc-CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHc-CCCcccEEEeccCCC
Q 026625 68 YTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL-DVEYIDLYYQHRVDT 137 (235)
Q Consensus 68 g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~~~iDl~~lh~~~~ 137 (235)
|.+-+.++++|-. .+|+++.|.--.. .+ ++-+..||+|| |+.|+.-+.+-|-.+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY-------------ER---e~VLm~sLeRL~gLPYLnKvvVVWNsp 687 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY-------------ER---EAVLMGSLERLHGLPYLNKVVVVWNSP 687 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe-------------hH---HHHHHHHHHHhhCCcccceEEEEeCCC
Confidence 4577888999976 7899988876432 12 33477899999 789999888876543
No 185
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=44.40 E-value=1.8e+02 Score=23.84 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
+..+....+...+..++.....+-.-| -+.+.+ +.+. ....+..+.|++.... ....+.+.+...+.+.+
T Consensus 11 PR~Dv~p~l~~~l~~~v~i~e~G~LDg--ls~~eI-~~~a-P~~ge~vLvTrL~DG~------~V~ls~~~v~~~lq~~i 80 (221)
T PF07302_consen 11 PRTDVTPELTEILGEGVEIVEAGALDG--LSREEI-AALA-PEPGEYVLVTRLRDGT------QVVLSKKKVEPRLQACI 80 (221)
T ss_pred CCchhHHHHHHHcCCCceEEEeccCCC--CCHHHH-HHhC-CCCCCceeEEEeCCCC------EEEEEHHHHHHHHHHHH
Confidence 556777888889988988887766555 344445 6666 3455677788775332 34578999999999999
Q ss_pred HHcCCCcccEEEeccCCC------CCC---HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc---CCeeEEeeccC
Q 026625 120 RRLDVEYIDLYYQHRVDT------SVP---IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPITAVQLEWS 187 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~------~~~---~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~~~~q~~~n 187 (235)
+.|-.+-.|+.++=+-.. ... .+.++..+-+..-.| +.+||-.-..+|+....+. ....+.-...|
T Consensus 81 ~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~as 158 (221)
T PF07302_consen 81 AQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAAS 158 (221)
T ss_pred HHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 888777678877754322 111 234555555555555 7899988888888755443 11223333445
Q ss_pred cccccccchHHHHHH---HhCCeEEecccC
Q 026625 188 LWARDIENEIVPLCR---ELGIGIVPYCPL 214 (235)
Q Consensus 188 ~~~~~~~~~l~~~~~---~~gi~v~a~spl 214 (235)
++... +.++.+.++ +.|..++..-.+
T Consensus 159 Py~~~-~~~l~~Aa~~L~~~gadlIvLDCm 187 (221)
T PF07302_consen 159 PYEGD-EEELAAAARELAEQGADLIVLDCM 187 (221)
T ss_pred CCCCC-HHHHHHHHHHHHhcCCCEEEEECC
Confidence 55332 244544444 446666655433
No 186
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=44.21 E-value=2.1e+02 Score=24.76 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccc
Q 026625 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 145 ~~~l~~l~~~G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (235)
++.+.++++.-.|. +.|=|-++..++.+++.....+++|+..+.+-.- .++++.|+++|+.++..|.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccH
Confidence 56666666553332 3344557778888888878888999887665432 56788999999999987766544
No 187
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=43.99 E-value=2.2e+02 Score=24.79 Aligned_cols=139 Identities=17% Similarity=0.100 Sum_probs=73.5
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCCC--C-----------------CCCCcHH---HHHH---HHHhcCCCCCE
Q 026625 39 LSEEDGISIIK-------HAFSKGITFFDTAD--K-----------------YGPYTNE---ILLG---KALKELPRENI 86 (235)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~--~-----------------Yg~g~sE---~~lG---~al~~~~R~~~ 86 (235)
.+.++..++++ .|.++|+..+|--- . || |.-| +++= +++++.-..++
T Consensus 131 mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~vg~~~ 209 (343)
T cd04734 131 MEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYG-GSLENRMRFLLEVLAAVRAAVGPDF 209 (343)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCC-CCHHHHhHHHHHHHHHHHHHcCCCC
Confidence 45666555544 46679999886543 2 33 2222 2222 23333234678
Q ss_pred EEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-------------CCCHHHHHHHHHHHHH
Q 026625 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-------------SVPIEETIGEMKKLVE 153 (235)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-------------~~~~~~~~~~l~~l~~ 153 (235)
.|..|++......+ ..+.+... .+-+.|+..| .+|++-+|.... ...-.-.|+.....++
T Consensus 210 ~v~iRl~~~~~~~~----G~~~~e~~-~~~~~l~~~G--~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 282 (343)
T cd04734 210 IVGIRISGDEDTEG----GLSPDEAL-EIAARLAAEG--LIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ 282 (343)
T ss_pred eEEEEeehhhccCC----CCCHHHHH-HHHHHHHhcC--CCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHH
Confidence 88899876442111 12343333 2334556666 244444432111 0011123566666666
Q ss_pred cCCccEEEeCC-CCHHHHHHHHhcCCeeEEeec
Q 026625 154 EGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 154 ~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~ 185 (235)
.=.+--+++.+ +++++++++++....+.+.+-
T Consensus 283 ~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 283 AVDLPVFHAGRIRDPAEAEQALAAGHADMVGMT 315 (343)
T ss_pred HcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 55677777776 478899999887766666653
No 188
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=43.88 E-value=2.1e+02 Score=24.59 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCC----cHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPY----TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g----~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
.+.+++.++++.+.+.|+..|--+. |.. .-++++.. +++.. -.++.|+|-.. .+.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~----------------ll~~ 105 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS----------------RLAR 105 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHHHH-HHhCCCCceEEEEeChh----------------HHHH
Confidence 6788999999999999998775432 110 12223322 22221 12455665421 1222
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCC--------CCHHHHHHHHHHHHHcCC----ccEEEeCCCCHHHHHHHHhc---CC
Q 026625 114 CCEASLRRLDVEYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV---HP 178 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~---~~ 178 (235)
.-..|...|++++. +-++..++. ..++.+++.++.+++.|. |..+.+...+.+++.++++. .+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 23445566766654 345554331 246789999999999885 33444445666666666543 34
Q ss_pred eeEEeeccCc
Q 026625 179 ITAVQLEWSL 188 (235)
Q Consensus 179 ~~~~q~~~n~ 188 (235)
+++.-++|-+
T Consensus 184 i~~~~ie~mP 193 (329)
T PRK13361 184 LDIAFIEEMP 193 (329)
T ss_pred CeEEEEeccc
Confidence 4444344444
No 189
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=43.78 E-value=2.1e+02 Score=24.64 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCCCCC--cHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCC
Q 026625 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 106 (235)
+.++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++... .-++-|+.|+.....+ ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 678888888888889999999 44555532 12234455554411 1245688887543311 01
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCC--------H-HHHHHHHHHHHHcC-CccEEEeCC-CCHHHHHHHH
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVP--------I-EETIGEMKKLVEEG-KIKYIGLSE-ASPDTIRRAH 174 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-~~~--------~-~~~~~~l~~l~~~G-~ir~iGvSn-~~~~~l~~~~ 174 (235)
+.+... .+-+.++..| +|.+-+|.-.. ... . ..-|+...++++.- .|--||..+ ++.+++.+.+
T Consensus 139 ~~~~~~-~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFLC-DFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHHH-HHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 112222 2334555666 67788897642 000 0 12577777888764 688888765 5677777766
Q ss_pred hcCCeeEEee
Q 026625 175 AVHPITAVQL 184 (235)
Q Consensus 175 ~~~~~~~~q~ 184 (235)
. ..+.+|+
T Consensus 215 ~--g~dgVMi 222 (318)
T TIGR00742 215 S--HVDGVMV 222 (318)
T ss_pred h--CCCEEEE
Confidence 4 3455554
No 190
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=43.63 E-value=2.7e+02 Score=25.84 Aligned_cols=138 Identities=12% Similarity=0.134 Sum_probs=74.7
Q ss_pred CCCCCCCcHHHHHHHHHhc----CC-CCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCC
Q 026625 62 ADKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVD 136 (235)
Q Consensus 62 A~~Yg~g~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~ 136 (235)
.-.|| .|+.|-++|++ .+ ++-++|.|-...-. .-+.+..-+++.-++.. -+.++.+|.|+
T Consensus 106 diVfG---Ge~kL~~~I~ea~~~~~~p~~I~V~tTC~t~l----------IGDDi~av~k~~~~~~~--~~pVi~v~tpG 170 (513)
T TIGR01861 106 HVVFG---AEKLLKQNIIEAFKAFPHIKRMTIYQTCATAL----------IGDDIAAIAKEVMEEMP--DVDIFVCNSPG 170 (513)
T ss_pred ceEeC---cHHHHHHHHHHHHHhCCCCCeEEEEccCchhh----------ccCCHHHHHHHHHHhcC--CCcEEEEeCCC
Confidence 34677 66655555554 43 55677777664322 22334444544444431 26899999997
Q ss_pred CCCC-----HHHHHHHH-HHHHH--------cCCccEEEeCCC--CHHHHHHHHhcCCeeEEeec---------------
Q 026625 137 TSVP-----IEETIGEM-KKLVE--------EGKIKYIGLSEA--SPDTIRRAHAVHPITAVQLE--------------- 185 (235)
Q Consensus 137 ~~~~-----~~~~~~~l-~~l~~--------~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~q~~--------------- 185 (235)
.... ...+.+++ ++++. .+.|.-||-.|+ +.+.+.++++...+.++-..
T Consensus 171 F~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A 250 (513)
T TIGR01861 171 FAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRA 250 (513)
T ss_pred ccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccC
Confidence 6431 22233333 23331 256888886664 45678888877666555322
Q ss_pred -cCcccc-cccchHHHHHH-HhCCeEEecccC
Q 026625 186 -WSLWAR-DIENEIVPLCR-ELGIGIVPYCPL 214 (235)
Q Consensus 186 -~n~~~~-~~~~~l~~~~~-~~gi~v~a~spl 214 (235)
.|+... .....+-++.+ +.||+.+..+|+
T Consensus 251 ~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~ 282 (513)
T TIGR01861 251 HLNVLECARSAEYICNELRKRYGIPRLDIDGF 282 (513)
T ss_pred CEEEEECHHHHHHHHHHHHHHhCCCeEecCcC
Confidence 222211 11122344444 569999888875
No 191
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.62 E-value=2.2e+02 Score=24.74 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCC---------CCCCCC--cHHHHHHHHHhcCCCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTA---------DKYGPY--TNEILLGKALKELPREN 85 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA---------~~Yg~g--~sE~~lG~al~~~~R~~ 85 (235)
++.++..+++...-++|+..|+.+ ..||.. ..++.+.+..+..++..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~ 78 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAK 78 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCE
Confidence 577888999999999999999994 223221 34556665555444433
No 192
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=43.60 E-value=1.6e+02 Score=23.09 Aligned_cols=97 Identities=9% Similarity=0.068 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccE-EEeCCCCHHHHHHHHhcCCeeEEeec
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~-iGvSn~~~~~l~~~~~~~~~~~~q~~ 185 (235)
++..+.+.++ .+.+.|.|+|.+-....+... .....++.++++++...+.- +.+-..+.....+.+.....+.+|++
T Consensus 9 ~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 9 DFARLGEEVK-AVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 4555666554 556788888777533333211 11134556666665432222 66666666665555555667788876
Q ss_pred cCcccccccchHHHHHHHhCCe
Q 026625 186 WSLWARDIENEIVPLCRELGIG 207 (235)
Q Consensus 186 ~n~~~~~~~~~l~~~~~~~gi~ 207 (235)
....+. ....++.++++|+.
T Consensus 87 ~~~~~~--~~~~~~~~~~~g~~ 106 (210)
T TIGR01163 87 PEASEH--IHRLLQLIKDLGAK 106 (210)
T ss_pred cCCchh--HHHHHHHHHHcCCc
Confidence 543211 24556666666654
No 193
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=43.31 E-value=2.2e+02 Score=24.68 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHHHcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHc-CCccEEEeCCC---CHHHHHHHHhcCC---eeEEeeccC
Q 026625 117 ASLRRLDVEYIDLYYQHR-VDT-SVPIEETIGEMKKLVEE-GKIKYIGLSEA---SPDTIRRAHAVHP---ITAVQLEWS 187 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~-~~~-~~~~~~~~~~l~~l~~~-G~ir~iGvSn~---~~~~l~~~~~~~~---~~~~q~~~n 187 (235)
+.-+.+|.|+||+-+.-. |+. +...++..+..+...+. +.=-.|..|.. +++.++++++... +-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 455688988888865432 221 12233344444444332 22222655532 6788888877522 3222222
Q ss_pred cccccccchHHHHHHHhCCeEEecccC
Q 026625 188 LWARDIENEIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 188 ~~~~~~~~~l~~~~~~~gi~v~a~spl 214 (235)
...-+.+.+.|+++|..|++.+|.
T Consensus 161 ---~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred ---HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111267999999999999998864
No 194
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.16 E-value=2.2e+02 Score=24.70 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEe--------c-cCCCCCCHHHHHHHHHHHHHc-CCccEEEeCC---CCHHHHH
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQ--------H-RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPDTIR 171 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~l--------h-~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvSn---~~~~~l~ 171 (235)
.++.+.+.+ +-+.|.+.|+++|.+-.. + .+.. .+ .|+.++++.+. ...+...+.. .+.+.++
T Consensus 20 ~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 20 QFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HT---DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred cCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CC---hHHHHHHHHHhCCCCEEEEEeccCccCHHHHH
Confidence 355665554 556789999999998522 1 1211 11 23444444332 2244333332 2567777
Q ss_pred HHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEe
Q 026625 172 RAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 172 ~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
.+.+. .++.+.+..+.-+-..-...+++++++|..+..
T Consensus 95 ~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 95 AAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 76654 345555544332222236788899999987654
No 195
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=42.56 E-value=2e+02 Score=23.97 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEee
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~ 184 (235)
.+.+.-.+-.+-..+-++++.|-+=.+..+... .++.+++++.++|+++|.+- +=+++-++...+++.+. .+++++.
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~vmP 150 (248)
T cd04728 73 RTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAVMP 150 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEeCC
Confidence 456666667777888889988888777665543 45789999999999999865 44566677776666654 4455533
Q ss_pred ccCcccccc---cchHHHHHHH-hCCeEEe
Q 026625 185 EWSLWARDI---ENEIVPLCRE-LGIGIVP 210 (235)
Q Consensus 185 ~~n~~~~~~---~~~l~~~~~~-~gi~v~a 210 (235)
--+++-... ..++++..++ .++.|++
T Consensus 151 lg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 151 LGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 223332211 2456666666 4778776
No 196
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=42.40 E-value=1.7e+02 Score=26.27 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHh--cCCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccc
Q 026625 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA--VHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 217 (235)
....+..++++.++.-|....+-.-+.+.+.+++. ..++.++..+-|++..-.+ ..+.+.|+++|+-++.=+.|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 45688888888888888888887777766665554 5778888889998887655 78999999999999999999988
Q ss_pred cCCCC
Q 026625 218 FFGGK 222 (235)
Q Consensus 218 ~L~~~ 222 (235)
.+...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 87765
No 197
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=42.30 E-value=39 Score=24.32 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCC
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYG 66 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 66 (235)
+.+.+.+....+++.|++.||.+..|-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 667888999999999999999999884
No 198
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=42.15 E-value=2.3e+02 Score=24.45 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC----------CCCC--CcHHHHHHHHHhcC-CCCCEEEEeccccccCCCcccccCC
Q 026625 40 SEEDGISIIKHAFSKGITFFDTAD----------KYGP--YTNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~----------~Yg~--g~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (235)
++++..++.+.+.+.|+..||.-- .+|. ...-+.+.+.++.. ..-++-|+.|+...+..
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC--------
Confidence 567777777888889999999432 2221 01123344444331 11144577776532210
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCeeEEe
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q 183 (235)
+..... .+-+.++..|. |.+.+|........ ..-|+.+.++++.=.|--||... .++++++++++....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111122 22234567774 66778865422111 13478888888876788888766 4788888888777777777
Q ss_pred ec
Q 026625 184 LE 185 (235)
Q Consensus 184 ~~ 185 (235)
+-
T Consensus 223 iG 224 (321)
T PRK10415 223 IG 224 (321)
T ss_pred EC
Confidence 75
No 199
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=42.08 E-value=1.7e+02 Score=23.17 Aligned_cols=70 Identities=26% Similarity=0.278 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC-c---HHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-T---NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~---sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
++++...+.+.|.++|..++=|+..|..+ - .-+.+.+.++ .+ +-.|...-. .+.+...+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~--~~----v~ik~aGGi---------kt~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG--GR----VGVKAAGGI---------RTLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC--CC----ceEEEeCCC---------CCHHHHHHHH
Confidence 56888999999999999999999777632 1 1234444443 12 233332211 1456666666
Q ss_pred HHHHHHcCC
Q 026625 116 EASLRRLDV 124 (235)
Q Consensus 116 ~~sL~~Lg~ 124 (235)
+.-..|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 666677765
No 200
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=41.81 E-value=2.3e+02 Score=24.44 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=52.4
Q ss_pred cEEEeccCCCCCCHH-HHHHHHHHHHHcCCccEEEeCC----CCHH----HHHHHHhcCCeeEE-eeccCcccc--cccc
Q 026625 128 DLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE----ASPD----TIRRAHAVHPITAV-QLEWSLWAR--DIEN 195 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvSn----~~~~----~l~~~~~~~~~~~~-q~~~n~~~~--~~~~ 195 (235)
.-+.+-.-++-...+ ...+.++.+..-..++.+|+.+ ..+. .+.+.++..++..+ ++.+|-... ....
T Consensus 144 ~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~d~~~ 223 (321)
T TIGR03821 144 NEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEIDAEVA 223 (321)
T ss_pred CEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCcHHHH
Confidence 334444433332222 2566677777778888888764 3222 22233333443333 446653321 1125
Q ss_pred hHHHHHHHhCCeEEecccCcccc
Q 026625 196 EIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 196 ~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
+.++.+++.|+.+...+++..|.
T Consensus 224 ~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 224 DALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHcCCEEEecceeeCCC
Confidence 67888999999999999998774
No 201
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=41.74 E-value=2.5e+02 Score=24.81 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=59.9
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC
Q 026625 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (235)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~ 138 (235)
-.|| .|+.+-+++++ .+.+=++|.|-....- .-+.+..-+++.-++.+ +.++.+|.|...
T Consensus 67 ~V~G---g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~----------iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~ 130 (406)
T cd01967 67 IVFG---GEKKLKKAIKEAYERFPPKAIFVYSTCPTGL----------IGDDIEAVAKEASKELG---IPVIPVNCEGFR 130 (406)
T ss_pred eeeC---cHHHHHHHHHHHHHhCCCCEEEEECCCchhh----------hccCHHHHHHHHHHhhC---CCEEEEeCCCee
Confidence 4566 57788888877 3344466666543221 12223333333333444 789999988543
Q ss_pred C-----CHHHHHHHHHHHH---------HcCCccEEEeCCCC--HHHHHHHHhcCCeeEE
Q 026625 139 V-----PIEETIGEMKKLV---------EEGKIKYIGLSEAS--PDTIRRAHAVHPITAV 182 (235)
Q Consensus 139 ~-----~~~~~~~~l~~l~---------~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~ 182 (235)
. ..+.++++|.+.. +.+.|.-||..++. .+++.++++...+.++
T Consensus 131 g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~ 190 (406)
T cd01967 131 GVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVN 190 (406)
T ss_pred CCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEE
Confidence 3 2444566655443 23568888987663 4678888877655544
No 202
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=41.73 E-value=92 Score=22.18 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=31.2
Q ss_pred eCCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 162 LSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 162 vSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
.+.-+.+++..+....+++++-+-...-.+....++.++++++||++..+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 3445566666665543355555544333333347788999999988887653
No 203
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=41.60 E-value=54 Score=31.30 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=74.3
Q ss_pred HcCCCeEeC--CCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEE
Q 026625 53 SKGITFFDT--ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLY 130 (235)
Q Consensus 53 ~~Gi~~~Dt--A~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~ 130 (235)
+.|+...|. .+.|| +++-+-+.++......+.|..-+-+....+ .++ +..+-.. .-+|-|+|
T Consensus 112 D~gyDi~d~~Idp~~G---T~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~-------ghd-----F~lAr~~-~~~Y~g~Y 175 (688)
T TIGR02455 112 DGNFDRISFDIDPLLG---SEEELIQLSRMAAAHNAITIDDIIPAHTGK-------GAD-----FRLAELA-HGDYPGLY 175 (688)
T ss_pred CCCCCcccCccCcccC---CHHHHHHHHHHHHHCCCEEEEEeCCCCCCC-------Ccc-----hHHHhhc-CCCCCCce
Confidence 345444443 55666 555555565553344455555444333221 112 3334444 45899999
Q ss_pred -EeccC--------CCCCC---HHHHHHHHHHHHHcCCccE---------EEe--CCCCHH--------HHHHHHhcCCe
Q 026625 131 -YQHRV--------DTSVP---IEETIGEMKKLVEEGKIKY---------IGL--SEASPD--------TIRRAHAVHPI 179 (235)
Q Consensus 131 -~lh~~--------~~~~~---~~~~~~~l~~l~~~G~ir~---------iGv--Sn~~~~--------~l~~~~~~~~~ 179 (235)
++.-| +.... ..-.-.+-+.|+++|.|-+ .|+ |||+.. ..++..-.+.|
T Consensus 176 ~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F 255 (688)
T TIGR02455 176 HMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYF 255 (688)
T ss_pred eeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhc
Confidence 22222 21111 1113345567788886532 344 688877 55555555666
Q ss_pred eEEeeccCccccc--ccchHH----HHHHHhCCeE
Q 026625 180 TAVQLEWSLWARD--IENEIV----PLCRELGIGI 208 (235)
Q Consensus 180 ~~~q~~~n~~~~~--~~~~l~----~~~~~~gi~v 208 (235)
-.-|-..|..++. ..+.++ .+-.+.|+.-
T Consensus 256 ~~~QPdLNw~dPs~av~~~~~gdal~~w~~lG~~G 290 (688)
T TIGR02455 256 KEGQPSLNWLDPTFAAQQLIIGDALHAIDCLGARG 290 (688)
T ss_pred cCCCCccCccCccHHHHHHHHHHHHHHHHHhcccc
Confidence 7778888888886 334444 3556666643
No 204
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=41.56 E-value=1.9e+02 Score=23.48 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=52.4
Q ss_pred CCeEeC-CCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEecc
Q 026625 56 ITFFDT-ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHR 134 (235)
Q Consensus 56 i~~~Dt-A~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~ 134 (235)
.+.++. +..|.. .+++.+.+|.++ .++++..+-|+...-.-.. .-....+.+.+.+-+.++.|| +++..++++-
T Consensus 19 F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~~--~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~ 93 (230)
T PF01904_consen 19 FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITHER--RLRDCAEELWRRFLEALEPLG-EKLGPILFQF 93 (230)
T ss_dssp -SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCCCC--HCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE-
T ss_pred CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHheecc--cccccHHHHHHHHHHHHHHHh-hcceEEEEEc
Confidence 455544 235654 577788889874 5589999999976542100 001135566455566999998 8999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 026625 135 VDTSVPIEETIGEMKKLVEE 154 (235)
Q Consensus 135 ~~~~~~~~~~~~~l~~l~~~ 154 (235)
|..-..-.+.++.|..+.+.
T Consensus 94 Ppsf~~~~~~~~~l~~~l~~ 113 (230)
T PF01904_consen 94 PPSFRFTPENLERLDAFLDR 113 (230)
T ss_dssp -TT--S-HHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHhh
Confidence 97643445666666666544
No 205
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=41.53 E-value=99 Score=24.44 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=40.6
Q ss_pred HHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCccEEEeC-CCCHHHHHHHHhcCCeeEEeeccC
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvS-n~~~~~l~~~~~~~~~~~~q~~~n 187 (235)
.++|.+++-+..-. .....+ .+....|.++... .+..+||- |-+.+.+.++....+++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~--~s~R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAP--KSPRYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCC--CCCCCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 36787665554332 222222 3444555555433 46778884 777888888888888999999754
No 206
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=41.40 E-value=1.5e+02 Score=24.30 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
++.+...+++++|-..|.+|+|.|..
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAad 49 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAAD 49 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecCC
Confidence 47789999999999999999999964
No 207
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=41.32 E-value=1.7e+02 Score=24.64 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCC---CCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~---~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~ 182 (235)
++.+... .+-+.|.++|+++|++=..-.|.. ..+.+++...+.. ...++..+++ -+...++++++.. ++.+
T Consensus 17 ~s~e~K~-~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i 90 (274)
T cd07938 17 IPTEDKI-ELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEV 90 (274)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEE
Confidence 4444444 455669999999999964433321 1223334444433 2346667775 4677888888753 3333
Q ss_pred eeccCccc--------ccc------cchHHHHHHHhCCeEE
Q 026625 183 QLEWSLWA--------RDI------ENEIVPLCRELGIGIV 209 (235)
Q Consensus 183 q~~~n~~~--------~~~------~~~l~~~~~~~gi~v~ 209 (235)
.+..+.-+ ... -...+++++++|+.+.
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 33322211 111 1456889999999886
No 208
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.11 E-value=3.5e+02 Score=26.40 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=84.6
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCCC-------------------CCCCCcHH---HH---HHHHHhcCCCCCE
Q 026625 39 LSEEDGISIIK-------HAFSKGITFFDTAD-------------------KYGPYTNE---IL---LGKALKELPRENI 86 (235)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~-------------------~Yg~g~sE---~~---lG~al~~~~R~~~ 86 (235)
++.+++.++++ .|.++|+..||.-- .|| |.-| ++ +=+++++.-.+++
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG-GSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 45666555444 56689999887632 233 2322 22 2233333334578
Q ss_pred EEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHH--HHHHHHHHHHHcCCccEE
Q 026625 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIE--ETIGEMKKLVEEGKIKYI 160 (235)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----~~~~--~~~~~l~~l~~~G~ir~i 160 (235)
.|..|+.......+ ..+.+... .+-+.|+..|+|+||+ |..... .... -......++++.=.|--+
T Consensus 620 ~v~~ri~~~~~~~~----g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~ 691 (765)
T PRK08255 620 PMSVRISAHDWVEG----GNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATI 691 (765)
T ss_pred eeEEEEccccccCC----CCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEE
Confidence 89999886432111 13344333 3334567778665554 432110 0000 011223455555456677
Q ss_pred EeCCC-CHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCe
Q 026625 161 GLSEA-SPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIG 207 (235)
Q Consensus 161 GvSn~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 207 (235)
++.+. +++..+++++....|.+.+-=.++.. ..=++..+++.++.
T Consensus 692 ~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~d--P~~~~~~~~~~~~~ 737 (765)
T PRK08255 692 AVGAISEADHVNSIIAAGRADLCALARPHLAD--PAWTLHEAAEIGYR 737 (765)
T ss_pred EeCCCCCHHHHHHHHHcCCcceeeEcHHHHhC--ccHHHHHHHHcCCC
Confidence 77775 67889999988777777663222221 12356677777776
No 209
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.05 E-value=2.1e+02 Score=23.69 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=55.8
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc-cchHHHHHHHhC
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPLCRELG 205 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~g 205 (235)
.++.++..|-+ .+-++.+.++. .+.=-..|=|-++..++.++++...++++|+..+..-.-. -..+.+.|+.+|
T Consensus 153 ~~i~~iEqP~~----~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLP----PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCC----hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 34555555532 24466666666 3333355556677778888888778889998866543211 267899999999
Q ss_pred CeEEecccCccc
Q 026625 206 IGIVPYCPLGRG 217 (235)
Q Consensus 206 i~v~a~spl~~G 217 (235)
+.++..+-+..+
T Consensus 228 i~~~~~~~~es~ 239 (263)
T cd03320 228 IPAVVSSALESS 239 (263)
T ss_pred CCEEEEcchhhH
Confidence 999876544433
No 210
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=40.87 E-value=1.3e+02 Score=24.05 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
..+.+.+++.++.+|.+ +.++ .+...+.....+.++++.++| +..|=++..+
T Consensus 14 ~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 45777888888888853 2332 333344567778888888776 6666665443
No 211
>smart00642 Aamy Alpha-amylase domain.
Probab=40.74 E-value=42 Score=25.89 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.7
Q ss_pred chHHHHHHHhCCeEEeccc
Q 026625 195 NEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a~sp 213 (235)
+.+++.|+++||.|+.=-+
T Consensus 73 ~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 73 KELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHCCCEEEEEEC
Confidence 7899999999999985433
No 212
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=40.74 E-value=2.8e+02 Score=25.22 Aligned_cols=112 Identities=14% Similarity=0.118 Sum_probs=60.2
Q ss_pred eCCCCCCCCcHHHHHHHHHhc----CC-CCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCC----cccEE
Q 026625 60 DTADKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE----YIDLY 130 (235)
Q Consensus 60 DtA~~Yg~g~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~----~iDl~ 130 (235)
+..-.|| .|+.+-++|++ .+ .+=++|.|-....- .-+.+..-++..-+++.-+ .+.++
T Consensus 66 E~dvVfG---G~~kL~~aI~~~~~~~~~p~~I~V~ttC~~ei----------IGDDi~~v~~~~~~~~~~e~~~~~~~vv 132 (457)
T TIGR02932 66 EESAVFG---GAKRIEEGVLTLARRYPNLRVIPIITTCSTET----------IGDDIEGSIRKVNRALKKEFPDRKIKLV 132 (457)
T ss_pred CCceEEC---cHHHHHHHHHHHHHhCCCCCEEEEECCchHHh----------hcCCHHHHHHHHHhhhhhhcCCCCCeEE
Confidence 3345788 77788888887 22 23466666543221 1222333333222222111 36889
Q ss_pred EeccCCCCCC----HHHHHHHHHHHH-H-----cCCccEEEeCCC--CHHHHHHHHhcCCeeEEee
Q 026625 131 YQHRVDTSVP----IEETIGEMKKLV-E-----EGKIKYIGLSEA--SPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 131 ~lh~~~~~~~----~~~~~~~l~~l~-~-----~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~q~ 184 (235)
.++.|+.... .+.+++++-+.. + +++|.-||-.+. +.+.+.++++...+.++.+
T Consensus 133 ~v~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 133 PVHTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred EeeCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 9999876533 334454444332 2 366888864432 4457777777766666654
No 213
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.41 E-value=99 Score=24.73 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=43.2
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcC-CeeEEeeccCccccccc
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQLEWSLWARDIE 194 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~ 194 (235)
+.|-.-|+..+.+=+ -. . ..++.+++++++--=-.||..+ .+.++++.+++.. .|. + .+...
T Consensus 27 ~al~~gGi~~iEiT~---~t--~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi-v-------SP~~~ 90 (196)
T PF01081_consen 27 EALIEGGIRAIEITL---RT--P---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI-V-------SPGFD 90 (196)
T ss_dssp HHHHHTT--EEEEET---TS--T---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE-E-------ESS--
T ss_pred HHHHHCCCCEEEEec---CC--c---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE-E-------CCCCC
Confidence 455556655444422 11 1 2344444444432224588866 5788999888763 331 1 12224
Q ss_pred chHHHHHHHhCCeEEe
Q 026625 195 NEIVPLCRELGIGIVP 210 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a 210 (235)
.+++++|+++|+.++.
T Consensus 91 ~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 91 PEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCcccC
Confidence 7899999999999884
No 214
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=39.80 E-value=94 Score=27.82 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccc
Q 026625 143 ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (235)
..-+.+..|.+.|.--..|+.+-+-...+.+....-..+.+-+|+.+......+..+..++.++.|.+--||+.+
T Consensus 278 ~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 278 PAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred cHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 356788899999999999999877666555555555567788999998866678888999999999988888654
No 215
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=39.12 E-value=27 Score=31.86 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=41.5
Q ss_pred CcccccCCC-----CceecCCCCcccCcc-eeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCe---EeCCCCCC
Q 026625 1 MAEDKKLQV-----PRVKLGTQGLEVSKL-GYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITF---FDTADKYG 66 (235)
Q Consensus 1 ~~~~~~~~m-----~~~~lg~~g~~vs~l-g~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~---~DtA~~Yg 66 (235)
||.+|.|.+ ....++-.-.+.|.+ ..|+++..- ..+.+++.++|+.|.-.|||. |||-.+-|
T Consensus 207 Ma~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~----vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 207 MAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRH----VYTREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred HHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcce----eecHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 666666543 233344455667777 777765332 257899999999999999996 57765443
No 216
>PRK00915 2-isopropylmalate synthase; Validated
Probab=38.86 E-value=3.2e+02 Score=25.30 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTAD 63 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (235)
++.++..++.+...+.|+..|+...
T Consensus 23 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 47 (513)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAGF 47 (513)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 4678888999998999999999875
No 217
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.58 E-value=1.4e+02 Score=21.10 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHhcCCeeEEeeccC
Q 026625 164 EASPDTIRRAHAVHPITAVQLEWS 187 (235)
Q Consensus 164 n~~~~~l~~~~~~~~~~~~q~~~n 187 (235)
+.+.+.+.+.+....++++.+.++
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecc
Confidence 344444444444444444444433
No 218
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.35 E-value=1.3e+02 Score=23.23 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCC-CEEEEecc-ccccCCCcccccCCCHHHHHH
Q 026625 36 NSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKF-GFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~-~~~~~~~~~~~~~~~~~~i~~ 113 (235)
|...+++..+-++++|-+.||.+|=.|..||. +-..+-+. .+.+ ++++.|.- +...+ ....+.+
T Consensus 8 G~eNT~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lem---veg~lkvVvVthh~Gf~e~---------g~~e~~~ 73 (186)
T COG1751 8 GKENTDETLEIAVERAKELGIKHIVVASSTGY--TALKALEM---VEGDLKVVVVTHHAGFEEK---------GTQEMDE 73 (186)
T ss_pred cccchHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHh---cccCceEEEEEeecccccC---------CceecCH
Confidence 33445666777888888999999999999983 33332223 2222 35555543 33222 2334566
Q ss_pred HHHHHHHHcCCC
Q 026625 114 CCEASLRRLDVE 125 (235)
Q Consensus 114 ~~~~sL~~Lg~~ 125 (235)
.++.-|+..|.+
T Consensus 74 E~~~~L~erGa~ 85 (186)
T COG1751 74 EVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHcCce
Confidence 777888888853
No 219
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=38.21 E-value=2.8e+02 Score=25.09 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=46.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCC---HHHHHHHHhc-CCeeEEeeccCcccc-cccchHHHHH
Q 026625 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEAS---PDTIRRAHAV-HPITAVQLEWSLWAR-DIENEIVPLC 201 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~---~~~l~~~~~~-~~~~~~q~~~n~~~~-~~~~~l~~~~ 201 (235)
.++++|.-.. -..+..+.++++|. |+++.|.+-. .+.++++++. ..+..+..--|..-. .+-+++...|
T Consensus 133 ~iitl~~eH~-----~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~ic 207 (428)
T KOG1549|consen 133 HIITLQTEHP-----CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKIC 207 (428)
T ss_pred eEEEecccCc-----chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHh
Confidence 4677764422 35566667777874 7788887643 4455555543 233222222222111 1237888899
Q ss_pred HHhCCeEEecccCc
Q 026625 202 RELGIGIVPYCPLG 215 (235)
Q Consensus 202 ~~~gi~v~a~spl~ 215 (235)
++.||.+++=..-+
T Consensus 208 r~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 208 REEGVQVHVDAAQA 221 (428)
T ss_pred CcCCcEEEeehhhh
Confidence 99999777644443
No 220
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=38.17 E-value=2.4e+02 Score=23.63 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHH--cCCCeEeCCCCCCCCcHHHHHHHHHhcCCCC-CEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 38 PLSEEDGISIIKHAFS--KGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~--~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
..++++..++++.|.+ .|+.-+-+.+.|= ....+.|+. ... .+-|+|=++.+... .+.+.....
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v-----~~a~~~L~~-~~~~~vkv~tVigFP~G~-------~~t~~K~~E 88 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRFI-----PIARKTLRE-QGTPEIRIATVTNFPHGN-------DDIDIALAE 88 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHHH-----HHHHHHhcc-cCCCCCeEEEEecCCCCC-------CcHHHHHHH
Confidence 3588999999999999 6898888887663 344555542 112 58888887765522 234445555
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc---CCccEEEe--CCCCHHH-HHHHHhc---CCeeEEeec
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGL--SEASPDT-IRRAHAV---HPITAVQLE 185 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGv--Sn~~~~~-l~~~~~~---~~~~~~q~~ 185 (235)
.+..++ .|.+-||+++=-..--....+.+.+.+.+.++. |++-.+=+ +-.+.++ +.++.+. ...++++..
T Consensus 89 a~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTS 167 (257)
T PRK05283 89 TRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTS 167 (257)
T ss_pred HHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 666666 499999997643332233455666666666653 33222222 2233343 5544432 455566654
No 221
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=38.04 E-value=2.2e+02 Score=28.37 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHcC
Q 026625 105 KGTPEYVRSCCEASLRRLDV--------------------------EYIDLYYQHRVDTSVPI---EETIGEMKKLVEEG 155 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~--------------------------~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G 155 (235)
+..+..+.+.++.+|+.++. ....+++|..|....+. ..+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 34456777778888887663 24677888888766543 46999999999999
Q ss_pred CccEEEeCCCCHHHHHHHHhc
Q 026625 156 KIKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 156 ~ir~iGvSn~~~~~l~~~~~~ 176 (235)
+ ++=+.+|+.++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 9 899999999999988765
No 222
>PRK05968 hypothetical protein; Provisional
Probab=38.02 E-value=2e+02 Score=25.43 Aligned_cols=54 Identities=7% Similarity=0.014 Sum_probs=37.6
Q ss_pred CCHHHHHHHHhcCCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCcccc
Q 026625 165 ASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
.+.+.+++++...++.+++.+.|+.-...+ ..+.+.|+++|+.++.=..++.+.
T Consensus 136 ~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 136 RDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 367778777655566677766776554333 678999999999988766665443
No 223
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=38.01 E-value=2.8e+02 Score=24.40 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=54.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhC
Q 026625 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG 205 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g 205 (235)
|-+.+-.|.. ...+..+..+...+.++..-+...+.+.+++++.. .++.++..+.|+.-...+ +.+.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5566554432 34555555655555555555555677888887743 445555556665544333 68899999999
Q ss_pred CeEEecccCcccc
Q 026625 206 IGIVPYCPLGRGF 218 (235)
Q Consensus 206 i~v~a~spl~~G~ 218 (235)
+-++.=..++.+.
T Consensus 167 ~~vvvD~a~~~~~ 179 (382)
T TIGR02080 167 AVVVVDNTFLSPA 179 (382)
T ss_pred CEEEEECCCcccc
Confidence 9998766665443
No 224
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=37.98 E-value=1.7e+02 Score=27.29 Aligned_cols=73 Identities=19% Similarity=0.079 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeE---EeeccCcccccccchHHHHHHHhCCeEEecccCc
Q 026625 140 PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITA---VQLEWSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (235)
Q Consensus 140 ~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~---~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~ 215 (235)
..+++.+.+.+.++..+|+.||+-.+...++..+++..++.+ .|--+++-.. -..++..-..|.-+..-.|+.
T Consensus 411 d~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~m 486 (546)
T COG4626 411 DYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPLM 486 (546)
T ss_pred CHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcHH
Confidence 466799999999999999999999999999998887755433 3333322221 345555556666666666553
No 225
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=37.71 E-value=1.5e+02 Score=21.96 Aligned_cols=49 Identities=8% Similarity=-0.081 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCeEeCCCCCCC--------C----------cHHHHHHHHHhcCCCCCEEEEeccc
Q 026625 45 ISIIKHAFSKGITFFDTADKYGP--------Y----------TNEILLGKALKELPRENIQVATKFG 93 (235)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~--------g----------~sE~~lG~al~~~~R~~~~I~tK~~ 93 (235)
...+..+++.|+|+||.--.++. | ..-..+.+++...+.+-|+++-|-.
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~ 97 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENH 97 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhh
Confidence 46788999999999987644431 1 1223444444445666677776643
No 226
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=37.63 E-value=1.9e+02 Score=25.14 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=41.2
Q ss_pred ccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccC
Q 026625 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 157 ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
++..-+...+.+.+++++.. .+..++..+.|+.-...+ +.+.+.|+++|+.++.=..++.+.+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 44444555567778777643 445566667777543323 7889999999999887776655544
No 227
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=37.62 E-value=2.4e+02 Score=23.46 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEE-EeccCCCC-CCHH----HHHHHHHHHHHc-CCccEEEeCCCCHHHHHHHHhcCC
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLY-YQHRVDTS-VPIE----ETIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHP 178 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~-~lh~~~~~-~~~~----~~~~~l~~l~~~-G~ir~iGvSn~~~~~l~~~~~~~~ 178 (235)
.+++.+.+.+++.+ .=|.++||+= .--+|+.. ...+ .+...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 35566665554443 5588999992 11223322 1222 244455555554 43 37888999999999998754
Q ss_pred eeEEeeccCcccccccchHHHHHHHhCCeEEecc
Q 026625 179 ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 179 ~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (235)
.-++-+ +... .+++++.++++|..++...
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 333333 2222 3679999999999999854
No 228
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=37.62 E-value=2.2e+02 Score=24.99 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=50.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhC
Q 026625 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG 205 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g 205 (235)
|-+++..+.. ......+..+.+.-.++..-+...+++.++++++. .+..++..+.|+.-.-.+ +++.+.|+++|
T Consensus 86 d~Vl~~~~~y----~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g 161 (378)
T TIGR01329 86 DEIIAGDDLY----GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQN 161 (378)
T ss_pred CEEEEcCCCc----hHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcC
Confidence 5555554321 23333344433332333344444467788777643 445566666666544333 77899999999
Q ss_pred CeEEecccCcccc
Q 026625 206 IGIVPYCPLGRGF 218 (235)
Q Consensus 206 i~v~a~spl~~G~ 218 (235)
+-++.=..++.+.
T Consensus 162 ~~vivD~a~~~~~ 174 (378)
T TIGR01329 162 ALVVVDNTMMSPL 174 (378)
T ss_pred CEEEEECCCcccc
Confidence 9998777665554
No 229
>PRK09358 adenosine deaminase; Provisional
Probab=37.08 E-value=2.7e+02 Score=23.89 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHHHHHhcCCeeEEeecc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~ 186 (235)
++...+.++..++...-+.+--+=++.++...+.+...+.++..++.|.--.+=++.. +.+.+..++....++.+---+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~ 227 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGV 227 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhh
Confidence 4444555555555422122222223334333445566777778888876554444432 234455555422222211001
Q ss_pred CcccccccchHHHHHHHhCCeEE
Q 026625 187 SLWARDIENEIVPLCRELGIGIV 209 (235)
Q Consensus 187 n~~~~~~~~~l~~~~~~~gi~v~ 209 (235)
.+ ..++++++..+++||.+.
T Consensus 228 ~l---~~~~~~~~~l~~~gi~v~ 247 (340)
T PRK09358 228 RA---IEDPALMARLADRRIPLE 247 (340)
T ss_pred hh---ccCHHHHHHHHHcCCeEE
Confidence 11 112568899999998764
No 230
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=36.91 E-value=2e+02 Score=24.94 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCC-cHHHHHHHHHhcCC---CCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKELP---RENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~lG~al~~~~---R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.+.++...+++.|.+.|++=|=-+ |.. .-.+-+-+-++.+. -.++-++|-... ...
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GGEPllR~dl~eIi~~l~~~~~~~islTTNG~~-----------------L~~ 102 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GGEPLLRKDLDEIIARLARLGIRDLSLTTNGVL-----------------LAR 102 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CCCchhhcCHHHHHHHHhhcccceEEEecchhh-----------------HHH
Confidence 478999999999999999977533 211 11122222222222 356666665321 222
Q ss_pred HHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC----ccEEEeCCCCHHHHHHHHhc
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvSn~~~~~l~~~~~~ 176 (235)
...-|+.-|++++.+ .||..++ ...++.+++.+++.++.|. |..+=+-+.+.+++..+++.
T Consensus 103 ~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 103 RAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred HHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 334455556554432 3444433 2236778888888888885 45565666666666665544
No 231
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=36.84 E-value=1e+02 Score=28.49 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCeE--eCCCCCCC--------CcHHHHHHHHHhc----CCCCCEEEEeccccccCCCc---------cc
Q 026625 46 SIIKHAFSKGITFF--DTADKYGP--------YTNEILLGKALKE----LPRENIQVATKFGFVELGFT---------SV 102 (235)
Q Consensus 46 ~~l~~A~~~Gi~~~--DtA~~Yg~--------g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~---------~~ 102 (235)
+-+....+.|+..+ =||-.|.. |.-|.++.-+ ++ -.+-.+++++-++.-....+ ..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aa-rk~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAA-RKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHH-HHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHH-HHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 44566678888876 46665543 4455554433 43 34668999998886553210 12
Q ss_pred ccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc---CCe
Q 026625 103 IVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPI 179 (235)
Q Consensus 103 ~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~~ 179 (235)
..+.+++.|++ |+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.++++.+. .++
T Consensus 185 ~vEvd~~ri~k-------R~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDPSRIEK-------RLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-HHHHHH-------HHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECHHHHHH-------HHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 33455665554 55578988753 35889999999999999999999988888888888876 345
Q ss_pred eEEeecc
Q 026625 180 TAVQLEW 186 (235)
Q Consensus 180 ~~~q~~~ 186 (235)
..-|..+
T Consensus 251 ~tDQTS~ 257 (546)
T PF01175_consen 251 VTDQTSA 257 (546)
T ss_dssp E---SST
T ss_pred ccCCCcc
Confidence 5556554
No 232
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=36.55 E-value=3e+02 Score=24.27 Aligned_cols=146 Identities=11% Similarity=0.111 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc---CC-CCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~---~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.+.+++.++++.+.+.|++.|--+- |.-.-...+-+.++. .+ -..+.|+|-... +.+.
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tG--GEPllr~dl~eli~~l~~~~gi~~i~itTNG~l----------------L~~~ 151 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTG--GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT----------------LSRK 151 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcchhhHHHHHHHHHhcCCCceEEEeeCcch----------------HHHH
Confidence 5778999999999999998775431 210111112233332 21 123555553211 1112
Q ss_pred HHHHHHHcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCCc----cEEEeCCCCHHHHHHHHhc---CCe
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPDTIRRAHAV---HPI 179 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~l~~~~~~---~~~ 179 (235)
+ ..|...|++.+- +-++..++ ...++.+++.++.+++.|.. ..+-+-.++.+++.++++. .++
T Consensus 152 ~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi 229 (373)
T PLN02951 152 L-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI 229 (373)
T ss_pred H-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC
Confidence 2 233444544332 22333322 12357889999999999852 2233344666666666543 445
Q ss_pred eEEeeccCcccccc--------cchHHHHHHHh
Q 026625 180 TAVQLEWSLWARDI--------ENEIVPLCREL 204 (235)
Q Consensus 180 ~~~q~~~n~~~~~~--------~~~l~~~~~~~ 204 (235)
.+.-++|.++.... ..++++..+++
T Consensus 230 ~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~ 262 (373)
T PLN02951 230 NVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQR 262 (373)
T ss_pred eEEEEEcccCCCCccccccCCCHHHHHHHHHHh
Confidence 55555555543221 14566666654
No 233
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=36.45 E-value=2.5e+02 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
++.++..++.+..-++||..|+....
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~ 42 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYR 42 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecC
Confidence 47788889999989999999999843
No 234
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=36.41 E-value=3.3e+02 Score=24.71 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCC---HHHHHHHHhcCCee
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAHAVHPIT 180 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~---~~~l~~~~~~~~~~ 180 (235)
.++++.+.+.+++..+.+. .++.+-+-.|.+. ...+..++.+..++++..=..+.+|+.. ++.++++.+. .++
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gvd 135 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GVG 135 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CCC
Confidence 4678888888888776652 3566667665443 3335688899888887211257777643 5777777664 345
Q ss_pred EEeeccCccccccc---------------------------chHHHHHHHhCCeEEecccCccc
Q 026625 181 AVQLEWSLWARDIE---------------------------NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 181 ~~q~~~n~~~~~~~---------------------------~~l~~~~~~~gi~v~a~spl~~G 217 (235)
.+.+..+-++...- .+-++.+.+.|+.+....++--|
T Consensus 136 ~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 136 HVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred eEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 66666555442110 12355677888887777776554
No 235
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=36.28 E-value=73 Score=26.42 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=43.9
Q ss_pred CCCcccCcceeccccCCCCCCCC--CCHHHHHHHHHHH----HHcCCCeEeCCC--CCCCCcHHHHHHHHHhc-------
Q 026625 16 TQGLEVSKLGYGCMSLSGCYNSP--LSEEDGISIIKHA----FSKGITFFDTAD--KYGPYTNEILLGKALKE------- 80 (235)
Q Consensus 16 ~~g~~vs~lg~G~~~~~~~~~~~--~~~~~~~~~l~~A----~~~Gi~~~DtA~--~Yg~g~sE~~lG~al~~------- 80 (235)
.+|+.+|.+||.+-+=-. +|.. ...+++.++++.| .+.|||.|--|. .|=...+|....+++..
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 578999999998753111 2222 2345566655554 588999998773 22112344444444443
Q ss_pred CCCCCEEEEeccc
Q 026625 81 LPRENIQVATKFG 93 (235)
Q Consensus 81 ~~R~~~~I~tK~~ 93 (235)
..+.++.++--+-
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 3456666665543
No 236
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.09 E-value=1.6e+02 Score=26.53 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-----C---CeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 146 GEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-----H---PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 146 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-----~---~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
+-...+-+.|-+..+|....+++++++.+.. . ++-+|-+ ++.-+...+...++.+.++||.++..+-
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 3344455779999999999999888776643 1 4544443 2222222246789999999998876653
No 237
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=35.72 E-value=3.5e+02 Score=24.76 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=58.6
Q ss_pred CCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCC
Q 026625 61 TADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVD 136 (235)
Q Consensus 61 tA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~ 136 (235)
..-.|| .|+.|-++|.+ .+.+=++|.|-..... --+.+..-+++.-++++ +.++.++.+.
T Consensus 97 ~dvVfG---g~~kL~~~I~ei~~~~~P~~I~V~tTC~~~l----------IGdDi~~v~~~~~~~~~---~pvi~v~t~G 160 (475)
T PRK14478 97 TDVVFG---GEKKLFKAIDEIIEKYAPPAVFVYQTCVVAL----------IGDDIDAVCKRAAEKFG---IPVIPVNSPG 160 (475)
T ss_pred CceeeC---CHHHHHHHHHHHHHhcCCCEEEEeCCChHHH----------hccCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 334567 67777777777 3344466666543221 11223333333333444 6788888776
Q ss_pred CCC----CHHHHHHHHHH-HH--------HcCCccEEEeCCCC--HHHHHHHHhcCCeeEE
Q 026625 137 TSV----PIEETIGEMKK-LV--------EEGKIKYIGLSEAS--PDTIRRAHAVHPITAV 182 (235)
Q Consensus 137 ~~~----~~~~~~~~l~~-l~--------~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~ 182 (235)
... ....++++|-+ ++ +.+.|.-||-.++. .+++.++++...+.++
T Consensus 161 f~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 161 FVGNKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVV 221 (475)
T ss_pred cccchhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEE
Confidence 542 23344544443 33 23568888866654 4577888877666555
No 238
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=35.44 E-value=3e+02 Score=23.91 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=46.9
Q ss_pred EEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
+|..|+.......+ .....+.+... .+-+.|+..|+|+|++- |.......-...++...++++.=.|--+++..++
T Consensus 220 ~v~vRis~~~~~~~-~~~~~~~ee~~-~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFND-MGDSDPEATFS-YLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCC-CCCCCCHHHHH-HHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECCCC
Confidence 47778765431100 00112333333 24445566676666551 2211111111234444455554456777777777
Q ss_pred HHHHHHHHhcCCeeEEee
Q 026625 167 PDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~ 184 (235)
++..+++++....|.+.+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 777888877766666554
No 239
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=35.37 E-value=4.1e+02 Score=26.74 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=57.4
Q ss_pred CCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHc-CCCcccEEEeccCC
Q 026625 62 ADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL-DVEYIDLYYQHRVD 136 (235)
Q Consensus 62 A~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~~~iDl~~lh~~~ 136 (235)
.-.|| .|+.+-++|++ .+.+-++|.|-....- --+.+..-+++.-++. ....+.++.++.|+
T Consensus 550 ~~VfG---G~~~L~~~I~~~~~~~~p~~I~V~tTc~~ei----------IGDDi~~vi~~~~~~~~~~~~~pvi~v~tpg 616 (917)
T PRK14477 550 TAIFG---GWENLKQGILRVIEKFKPKVIGVMTTGLTET----------MGDDVRSAIVQFREEHPELDDVPVVWASTPD 616 (917)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEECCchHhh----------hhcCHHHHHHHHHhhccccCCCeEEEeeCCC
Confidence 34677 67777777776 3445566666543211 1122333333222221 01236899999997
Q ss_pred CCCCH----HHHHHHHH-HHH-----HcCCccEEEeCCCC---HHHHHHHHhcCCeeEEe
Q 026625 137 TSVPI----EETIGEMK-KLV-----EEGKIKYIGLSEAS---PDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 137 ~~~~~----~~~~~~l~-~l~-----~~G~ir~iGvSn~~---~~~l~~~~~~~~~~~~q 183 (235)
..... +.+++++- ++. ..++|.-||-++.. .+.+.++++...+.++-
T Consensus 617 F~Gs~~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 617 YCGSLQEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred CccCHHHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 75332 23343443 222 24678888766543 35566666666655544
No 240
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=35.25 E-value=1.8e+02 Score=28.15 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 120 (235)
-+-+.+++++|-+.|++.+- .|. |+--..- .+.+-|+-++..|..+... ..=.|.+-++ ..+
T Consensus 42 gEIaIRvFRa~tEL~~~tvA---iYs----eqD~~sM-HRqKADEaY~iGk~l~PV~---------AYL~ideii~-iak 103 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTVA---IYS----EQDRLSM-HRQKADEAYLIGKGLPPVG---------AYLAIDEIIS-IAK 103 (1176)
T ss_pred CcchhHHHHHHhhhcceEEE---EEe----ccchhhh-hhhccccceecccCCCchh---------hhhhHHHHHH-HHH
Confidence 35678999999999999874 674 4333332 2256788888888643221 0112222222 223
Q ss_pred HcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHH----------HhcCCeeEEeeccCccc
Q 026625 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA----------HAVHPITAVQLEWSLWA 190 (235)
Q Consensus 121 ~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~----------~~~~~~~~~q~~~n~~~ 190 (235)
+-+ +|. +| |... -+.+--+.-++.++.| |++||=|. +.+..+ ++..-+ ++--.=.++.
T Consensus 104 ~~~---vda--vH-PGYG-FLSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVp-vVPGTpgPit 171 (1176)
T KOG0369|consen 104 KHN---VDA--VH-PGYG-FLSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVP-VVPGTPGPIT 171 (1176)
T ss_pred HcC---CCe--ec-CCcc-ccccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCC-ccCCCCCCcc
Confidence 333 444 34 3221 1234444445555554 78999874 322221 111111 1111111111
Q ss_pred ccccchHHHHHHHhCCeEEecccCccc
Q 026625 191 RDIENEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (235)
. -++..+||+++|.+||--..+++|
T Consensus 172 t--~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 172 T--VEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred c--HHHHHHHHHhcCCcEEEeecccCC
Confidence 1 278999999999999988888766
No 241
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.13 E-value=1.7e+02 Score=23.64 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC---ccEEEeCC-CCHHHHHHHHhcC-CeeEE
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK---IKYIGLSE-ASPDTIRRAHAVH-PITAV 182 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~---ir~iGvSn-~~~~~l~~~~~~~-~~~~~ 182 (235)
.+.... +-+.|-.-|+.-+.+=+= . ....+.+++++++-. =-.||..+ .+.++++.+++.. .|- +
T Consensus 24 ~~~a~~-~~~al~~~Gi~~iEit~~-~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi-v 93 (213)
T PRK06552 24 KEEALK-ISLAVIKGGIKAIEVTYT-N-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI-V 93 (213)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEECC-C-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE-E
Confidence 344433 334556667665555331 1 235566666665421 13578765 5678888888763 331 1
Q ss_pred eeccCcccccccchHHHHHHHhCCeEEe
Q 026625 183 QLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 183 q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
+ +....+++++|+++|+.++.
T Consensus 94 ----s---P~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 94 ----S---PSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred ----C---CCCCHHHHHHHHHcCCCEEC
Confidence 1 22236788888888877763
No 242
>PRK10200 putative racemase; Provisional
Probab=34.95 E-value=2.2e+02 Score=23.16 Aligned_cols=62 Identities=21% Similarity=0.064 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCCccEEEeCCCCHH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 168 (235)
.+.+.+++-++..-.+.+.++++.+.+++++-. .+.....+.++.|.+.| +..|-+...+..
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah 87 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMH 87 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHH
Confidence 345667777777777888899999999998431 23445667777777776 688888665543
No 243
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.87 E-value=2.6e+02 Score=22.96 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=48.5
Q ss_pred HHHcCCCcccEEEeccCCCCCCH-HHHHHHHHHHHHcCCccEEEeCC-CCHHHHHHHHhcCCeeEEeeccCcccccc-cc
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDI-EN 195 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~ir~iGvSn-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 195 (235)
+..+| +|-+.+|..+..... .--|+.+.++.+.-.+.-|.-.. .+.+++.++.+....+.+.+-=-+..... ..
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~ 238 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIG 238 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH
Confidence 34556 456677664432110 11366666666654555554443 45788888776555555544322222221 26
Q ss_pred hHHHHHHHhCCeE
Q 026625 196 EIVPLCRELGIGI 208 (235)
Q Consensus 196 ~l~~~~~~~gi~v 208 (235)
++.+.|++.||.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7899999988865
No 244
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.82 E-value=3.1e+02 Score=23.87 Aligned_cols=149 Identities=9% Similarity=0.078 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCC-cHHHHHHHHHhc-C-CCCCEEEEeccccccCCCcccccCCCHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKE-L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~lG~al~~-~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 116 (235)
+.++..+-...+.+.|++.|=.-- |.. ......=+++++ . +.-++.|=.--+ .+.+...+ +-
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~------------~~~~~A~~-~~ 202 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDANGA------------YSRKQALA-LA 202 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECCCC------------CCHHHHHH-HH
Confidence 455566667777889999875321 211 122223345554 2 222333322211 23333222 22
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCcc-EEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI 193 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir-~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 193 (235)
+.|+.+ ++.++..|-+ .+-++.+.+|++. -.|. ..|=|.++..++.++++..-.+++|+...-.-.-.
T Consensus 203 ~~l~~~-----~~~~~EeP~~----~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit 273 (352)
T cd03328 203 RAFADE-----GVTWFEEPVS----SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVT 273 (352)
T ss_pred HHHHHh-----CcchhhCCCC----hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 334443 4455554432 2457788888876 3222 44557789999999999888899999876543211
Q ss_pred -cchHHHHHHHhCCeEEecc
Q 026625 194 -ENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 194 -~~~l~~~~~~~gi~v~a~s 212 (235)
-..+.+.|+.+|+.++..+
T Consensus 274 ~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 274 GFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHHHcCCeeccCc
Confidence 2678999999999998764
No 245
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.78 E-value=2.6e+02 Score=25.17 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=37.1
Q ss_pred ccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccc
Q 026625 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 157 ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 217 (235)
++.+-+...+.+.+++++.. .+..++..+.|+.-...+ .++.+.|+++|+.++.=..++.+
T Consensus 129 v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 34344444567788777643 445455555555333222 67889999999988866665543
No 246
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=34.64 E-value=2.1e+02 Score=26.28 Aligned_cols=93 Identities=8% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccE---------EEeccCCCCCCHHHHHHHHHHHHHc-CCccE---------EEeCCCCHHHHHH
Q 026625 112 RSCCEASLRRLDVEYIDL---------YYQHRVDTSVPIEETIGEMKKLVEE-GKIKY---------IGLSEASPDTIRR 172 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl---------~~lh~~~~~~~~~~~~~~l~~l~~~-G~ir~---------iGvSn~~~~~l~~ 172 (235)
...+-..|.++|++.|++ +-...++ .|+.++++++. ..++. +|..++.-+-++.
T Consensus 27 kl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~-------p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 27 MLPALEAFDRMGFYSMEVWGGATFDVCVRFLNEN-------PWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred HHHHHHHHHHcCCCEEEecCCccchhhhcccCCC-------HHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHH
Q ss_pred HHhc---CCeeEEeeccCcccccccchHHHHHHHhCCeEEec
Q 026625 173 AHAV---HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 173 ~~~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~ 211 (235)
.++. ..++++.+-.++-+...-...+++++++|..+.+.
T Consensus 100 fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 141 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGA 141 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEE
No 247
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=34.52 E-value=3.1e+02 Score=23.85 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHH-----------------Hhc--CCCCCEEEEeccccccCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA-----------------LKE--LPRENIQVATKFGFVELGF 99 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~a-----------------l~~--~~R~~~~I~tK~~~~~~~~ 99 (235)
.+.+....+.+.|-+.|+.+|=|...-. +-..+-+. |+. -....++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm------- 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE---SADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM------- 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH---HHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC-------
Confidence 5778899999999999999997664221 22222111 011 123345555532
Q ss_pred cccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-CH-HHHHHHHHHHHHcCCccEEEeCCCCHHH
Q 026625 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PI-EETIGEMKKLVEEGKIKYIGLSEASPDT 169 (235)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-~~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 169 (235)
.+.+.+..+++...+ -|.+.-|+.++|+..... +. .--+.++..|++.=. .-||+|.|+...
T Consensus 143 ------atl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 143 ------ATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred ------CCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccH
Confidence 246778888876643 343212699999986432 22 224556666665422 469999998654
No 248
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=34.35 E-value=1.5e+02 Score=24.66 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHH-HcCCccEEEeCC-------CCHHHHHHHHhcCCeeEEee
Q 026625 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLV-EEGKIKYIGLSE-------ASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~-~~G~ir~iGvSn-------~~~~~l~~~~~~~~~~~~q~ 184 (235)
..++..|+-.| +|||++=+-|-.......+.++..-++. +-|.--+.|=.- -..++..+.++...|+++.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 45666777777 8999999998766544444444444443 334444444322 12334444444467777777
Q ss_pred ccCccccccc--chHHHHHHHhCCeEEe
Q 026625 185 EWSLWARDIE--NEIVPLCRELGIGIVP 210 (235)
Q Consensus 185 ~~n~~~~~~~--~~l~~~~~~~gi~v~a 210 (235)
.=.-+.-..+ ..+++.+++.|..|++
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 6554443322 4678888888877664
No 249
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=34.27 E-value=3.1e+02 Score=23.81 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=63.1
Q ss_pred HHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 026625 77 ALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 156 (235)
Q Consensus 77 al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 156 (235)
.+....|+++=++|++.......+=.....+ ..+.+.+-+..++.|- +..+|.. +.++.....++....|+
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-t~iN~~LA~~a~~~G~----~~~~~k~----~~e~~~~~~r~~~~~~l 86 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-TIIDEKIAEWLAENGY----FYIMHRF----DPEARIPFIKDMHEQGL 86 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEeccc-chhHHHHHHHHHHcCC----EEEEecC----CHHHHHHHHHhcccccc
Confidence 3444567888888887633221110111122 2677777778888863 4556762 23333333344444566
Q ss_pred ccEEEeCC--CCHHHHHHHHhcC-CeeEEeeccCcccccccchHHHHHHHh--CCeEEe
Q 026625 157 IKYIGLSE--ASPDTIRRAHAVH-PITAVQLEWSLWARDIENEIVPLCREL--GIGIVP 210 (235)
Q Consensus 157 ir~iGvSn--~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~l~~~~~~~--gi~v~a 210 (235)
+-.++++. ...+++.++++.. .++++++....-+.....++++..+++ ++.|++
T Consensus 87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 55445443 2224444445432 347888765543322224555555544 355554
No 250
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=33.90 E-value=2.3e+02 Score=22.39 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHcCCccEEEeCCCCH--HHHHHHHhcCCeeEEeecc
Q 026625 111 VRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q~~~ 186 (235)
....+...++..+..- +-+.+.-.+. ........+.+..|++.|- .+.+.++.. ..+..+. ..+++++=+..
T Consensus 101 ~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld~ 176 (241)
T smart00052 101 LVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKIDK 176 (241)
T ss_pred HHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEECH
Confidence 4455667777766542 2333333321 1233445689999999997 567766643 3333333 34567776665
Q ss_pred Cccccc--------ccchHHHHHHHhCCeEEec
Q 026625 187 SLWARD--------IENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 187 n~~~~~--------~~~~l~~~~~~~gi~v~a~ 211 (235)
+++..- .-..++..|+..|+.+++-
T Consensus 177 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 177 SFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 544321 1155788888999988853
No 251
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=33.85 E-value=1.2e+02 Score=25.17 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHH-HHHcCCccEEEeCCC-----CHHHHH---HHHhcCCeeEEe
Q 026625 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIGLSEA-----SPDTIR---RAHAVHPITAVQ 183 (235)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~-l~~~G~ir~iGvSn~-----~~~~l~---~~~~~~~~~~~q 183 (235)
+.++..|+-.| +|||++=+-|-......++.++..-+ +++-|.--+.| -++ ....+. +..+...|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 45667777888 79999999887665544445544444 44456655556 211 011222 223335677777
Q ss_pred eccCccccccc--chHHHHHHHhCCeEEe
Q 026625 184 LEWSLWARDIE--NEIVPLCRELGIGIVP 210 (235)
Q Consensus 184 ~~~n~~~~~~~--~~l~~~~~~~gi~v~a 210 (235)
+.-..+.-..+ ..+++.++++|..+..
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 76555544322 4678888888877764
No 252
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=33.67 E-value=19 Score=32.72 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=34.9
Q ss_pred CCccEEEeCCCCHHHHHHHHhcCC-eeEEeeccCcccccccchHHHHHHHhCCe
Q 026625 155 GKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWARDIENEIVPLCRELGIG 207 (235)
Q Consensus 155 G~ir~iGvSn~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~ 207 (235)
+.+|++|+..++.+.+.++..... -+.++.+..++-...+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 468899999888888887776522 23444444555444456777777777764
No 253
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=33.46 E-value=2.7e+02 Score=22.89 Aligned_cols=85 Identities=11% Similarity=0.009 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCc-HHHHHHHHHhcCCCCC-EEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYT-NEILLGKALKELPREN-IQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~-sE~~lG~al~~~~R~~-~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
+.+++.+.+..+...+.+.++.--.|=... +...+-.++.+..++. ++++-+.-... + ....+.+.-.+.++.
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EG----G-~~~~~~~~~i~ll~~ 86 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEG----G-EFPGSEEEYIELLKK 86 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhc----C-CCCCCHHHHHHHHHH
Confidence 668888889999999988776665554211 2233333444433444 55555422111 1 112345555666766
Q ss_pred HHHHcCCCcccE
Q 026625 118 SLRRLDVEYIDL 129 (235)
Q Consensus 118 sL~~Lg~~~iDl 129 (235)
..+.-+.+|+|+
T Consensus 87 la~~~~~d~iDi 98 (231)
T COG0710 87 LAELNGPDYIDI 98 (231)
T ss_pred HHhhcCCCEEEE
Confidence 666666888887
No 254
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=33.21 E-value=2.8e+02 Score=22.98 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc--CCeeEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQ 183 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q 183 (235)
.+++.+.+..++.++ -|.|+||+=. .|. ..+-.+.+..+...+++-.=.-|.|-+++++.++++++. ...-++-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINs 98 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNS 98 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEe
Confidence 456777777766664 5999999854 232 222222233332223321112378888999999999986 3332333
Q ss_pred eccCcccc-cccchHHHHHHHhCCeEEecccC
Q 026625 184 LEWSLWAR-DIENEIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 184 ~~~n~~~~-~~~~~l~~~~~~~gi~v~a~spl 214 (235)
+ +.... .....+++.++++|..++....-
T Consensus 99 I--s~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 99 I--NLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred C--CCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 3 33321 11257889999999988887543
No 255
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=33.16 E-value=2.5e+02 Score=23.09 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=35.7
Q ss_pred ccEEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc
Q 026625 127 IDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 127 iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 176 (235)
.+++.+.-|....++ ...-+.+.+++.+|+ .+=+|+|..++++++...
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCc--EEEEecccHHHHHHhhhe
Confidence 455666656554443 467888899999997 678899999999988754
No 256
>PRK05588 histidinol-phosphatase; Provisional
Probab=33.01 E-value=2.8e+02 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCC
Q 026625 42 EDGISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
....+.+++|.+.|+..+ .+++
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH 37 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEH 37 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCC
Confidence 346799999999999988 6655
No 257
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=32.82 E-value=2.7e+02 Score=22.71 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCccEEEeCCCCHHHHHHHHhcCC---eeEE-------------eec---cCcccccccchHHHHHHHhCCeEEeccc
Q 026625 155 GKIKYIGLSEASPDTIRRAHAVHP---ITAV-------------QLE---WSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 155 G~ir~iGvSn~~~~~l~~~~~~~~---~~~~-------------q~~---~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
+..+.+=+++|+++.+..+.+..+ ..+. +.. +++-.......+++.++++|+.|.+|..
T Consensus 140 ~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 140 GAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred CCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 444567789999888877765421 1000 000 1111111236899999999999999974
No 258
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.75 E-value=3.7e+02 Score=24.13 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=58.8
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC
Q 026625 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (235)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~ 138 (235)
-.|| .|+.|-++|++ .+.+-++|.|-....- .-+.+..-+++. ++++ ++++.++.|+..
T Consensus 66 ~V~G---g~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~----------IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~ 128 (427)
T cd01971 66 IVFG---GEDRLRELIKSTLSIIDADLFVVLTGCIAEI----------IGDDVGAVVSEF-QEGG---APIVYLETGGFK 128 (427)
T ss_pred eEeC---CHHHHHHHHHHHHHhCCCCEEEEEcCCcHHH----------hhcCHHHHHHHh-hhcC---CCEEEEECCCcC
Confidence 4577 57777778777 3445566666543221 122233333333 3443 688999988654
Q ss_pred CC----HHHHHHHHHH-HHH------cCCccEEEeCC-------CCHHHHHHHHhcCCeeEEee
Q 026625 139 VP----IEETIGEMKK-LVE------EGKIKYIGLSE-------ASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 139 ~~----~~~~~~~l~~-l~~------~G~ir~iGvSn-------~~~~~l~~~~~~~~~~~~q~ 184 (235)
.. .+.+++++-+ +.. .+.|.-||..+ .+.+.+.++++...+.++.+
T Consensus 129 g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 129 GNNYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred cccccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 32 3334444443 222 34588888643 23577888887766655444
No 259
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.62 E-value=1.5e+02 Score=22.95 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCc----ccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc
Q 026625 112 RSCCEASLRRLDVEY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~----iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 176 (235)
.+.++..++++|.+. ++.+.-.+ .......++.+.|++|++.| ++-.-+||.+...+...++.
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 62 REALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 455666677777641 11111111 11123457888899999887 55566888887777766654
No 260
>PLN02681 proline dehydrogenase
Probab=32.33 E-value=4e+02 Score=24.39 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCC-eEeCCCCCCCCcHHHHHHHHHhcCCC----CCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 43 DGISIIKHAFSKGIT-FFDTADKYGPYTNEILLGKALKELPR----ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 43 ~~~~~l~~A~~~Gi~-~~DtA~~Yg~g~sE~~lG~al~~~~R----~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
...++++.|.+.|++ .||.=..|=...-....-+..++..+ .-|+++--.... .+++.+...++.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk----------~t~~~l~~~l~~ 290 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLK----------DARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCccc----------cCHHHHHHHHHH
Confidence 456788899999998 66765544321222323333333333 234444433322 256677777765
Q ss_pred HHHH---cCC-----CcccE-----EEeccCCCC-CC---HHHHHHH-HHHHHH---cCCccEEEeCCCCHHHHHHHHhc
Q 026625 118 SLRR---LDV-----EYIDL-----YYQHRVDTS-VP---IEETIGE-MKKLVE---EGKIKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 118 sL~~---Lg~-----~~iDl-----~~lh~~~~~-~~---~~~~~~~-l~~l~~---~G~ir~iGvSn~~~~~l~~~~~~ 176 (235)
+.+. +|+ -|+|- -.+.+|++- .. .+..++. ++.+.+ .+. -++.|.+|+.+.+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 5432 222 12221 111222221 11 1223333 222333 244 4889999999877766543
Q ss_pred ---C--CeeEEeeccCcccccccchHHHHHHHhCCeEEecccCcc
Q 026625 177 ---H--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 177 ---~--~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 216 (235)
. +..-..+.|-.+.. ..+++-....+.|..|.-|-|++.
T Consensus 370 ~~~~gi~~~~~~veF~qL~G-M~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLG-MSDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCC-CCHHHHHHHHhcCCCEEEEeeccC
Confidence 1 11111222222222 124566667778999999999873
No 261
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=32.30 E-value=1.2e+02 Score=24.92 Aligned_cols=98 Identities=19% Similarity=0.143 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc----CCccEEEeCCC--CHHHHHHHHhcCCee
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE----GKIKYIGLSEA--SPDTIRRAHAVHPIT 180 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvSn~--~~~~l~~~~~~~~~~ 180 (235)
+.+.+..-+.+.-+.-.- . -+++..|-.....+++.++|.+|++. |-=-.|=.-.| +.+.+..+......+
T Consensus 87 d~~~~adYl~~l~~aA~P--~-~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~d 163 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAP--F-KLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAAD 163 (248)
T ss_dssp -HHHHHHHHHHHHHHHTT--S--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SS
T ss_pred CHHHHHHHHHHHHHhcCC--C-eeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcC
Confidence 455565555444443321 2 25667775556677777777777643 32222222334 468888888887788
Q ss_pred EEeecc---CcccccccchHHHHHHHhCCeEE
Q 026625 181 AVQLEW---SLWARDIENEIVPLCRELGIGIV 209 (235)
Q Consensus 181 ~~q~~~---n~~~~~~~~~l~~~~~~~gi~v~ 209 (235)
.+|+.- .-++.. -+.+-+|+++|++..
T Consensus 164 mVQIKtPDLGgi~nt--ieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 164 MVQIKTPDLGGINNT--IEAVLYCKEHGVGAY 193 (248)
T ss_dssp EEEE-GGGGSSTHHH--HHHHHHHHHTT-EEE
T ss_pred EEEecCCCccchhhH--HHHHHHHHhcCCcee
Confidence 899852 222221 456789999999865
No 262
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=32.18 E-value=2.3e+02 Score=21.52 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCC-CCc-----HHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYG-PYT-----NEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~-----sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
++...+.++.|++.|.+.|++--..- +|. .--.+-+.|+..+ +-.+.|=-|.... .+.+.+
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~~ 79 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLEA 79 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHHH
Confidence 47788999999999999886553221 110 0112223333222 2234444443211 123444
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC--CHHHHH-HHHhcCCeeEEeeccCccc
Q 026625 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA--SPDTIR-RAHAVHPITAVQLEWSLWA 190 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~--~~~~l~-~~~~~~~~~~~q~~~n~~~ 190 (235)
.+-..+++.+. .+-+++.+.+. +.+..+.+...+=+ +|+... ...... .......++.+..++..+
T Consensus 80 ~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 148 (189)
T cd08556 80 KVAELLREYGL--EERVVVSSFDH-----EALRALKELDPEVP---TGLLVDKPPLDPLLAELARALGADAVNPHYKLL- 148 (189)
T ss_pred HHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCCCc---EEEEeecCcccchhhhHHHhcCCeEEccChhhC-
Confidence 45555555552 23444444322 23333333322211 232222 111111 122223445555555432
Q ss_pred ccccchHHHHHHHhCCeEEeccc
Q 026625 191 RDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 191 ~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
...+++.|+++|+.+.+|..
T Consensus 149 ---~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 149 ---TPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred ---CHHHHHHHHHcCCEEEEEcC
Confidence 36899999999999999974
No 263
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=32.01 E-value=3.3e+02 Score=23.35 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=59.2
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhC
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELG 205 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~g 205 (235)
.++.++..|-+. +.++.+.+|.+.-. =-..|=|-++..++..++.....+++|+..+..-. -..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~----~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPP----DQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCc----ccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 467777766432 34667777766533 33556677888999999888778888887665443 146788999999
Q ss_pred CeEEecccCccc
Q 026625 206 IGIVPYCPLGRG 217 (235)
Q Consensus 206 i~v~a~spl~~G 217 (235)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999986655444
No 264
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=31.62 E-value=2.8e+02 Score=23.90 Aligned_cols=148 Identities=9% Similarity=0.049 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCCeE-eCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
.+.+.++|+...+.||.++ -|+..|. .+-...++..-+..+|+.-........ .+.+ . ..
T Consensus 20 ~~~a~~aL~~Lk~~GI~vVlaTGRt~~------ev~~l~~~Lgl~~p~I~eNGA~I~~p~-----~~~~----~---~~- 80 (302)
T PRK12702 20 YGAARQALAALERRSIPLVLYSLRTRA------QLEHLCRQLRLEHPFICEDGSAIYVPE-----HYFP----A---GI- 80 (302)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHH------HHHHHHHHhCCCCeEEEeCCcEEEEcc-----cccc----c---cc-
Confidence 3557899999999999865 5555553 233333444445577777655433110 0000 0 00
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCe---eEEeeccCc--cccccc
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI---TAVQLEWSL--WARDIE 194 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~---~~~q~~~n~--~~~~~~ 194 (235)
...+....|-|.+... ..+..++...|+++.++-..+..|+++++.+++.++.....- -..|=+||- +....+
T Consensus 81 ~~~~~~~~~~~~~~~l--g~~y~~ir~~L~~l~~~~~~~f~gF~d~t~~ei~~~TGL~~~~A~~A~~Re~SEp~~w~~~~ 158 (302)
T PRK12702 81 LDEQWQHRPPYYVCAL--GLPYPCLRHILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQKREYSEIFSYSGDP 158 (302)
T ss_pred cccccccCCCceEEec--CCCHHHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCcceEecCCH
Confidence 0011112233333322 234678889999999998899999999999888877543110 011112221 111112
Q ss_pred chHHHHHHHhCCeEE
Q 026625 195 NEIVPLCRELGIGIV 209 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~ 209 (235)
..+.+.+++.|+.+.
T Consensus 159 ~~~~~~~~~~g~~~~ 173 (302)
T PRK12702 159 ARLREAFAQQEANLT 173 (302)
T ss_pred HHHHHHHHHcCCeEE
Confidence 345777888877665
No 265
>PRK10551 phage resistance protein; Provisional
Probab=31.62 E-value=3.8e+02 Score=24.76 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCCH--HHHHHHHhcCCeeEEeec
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q~~ 185 (235)
..+...+.+.++.++.... -+.+.-.+.. .......+.++.|++.|. .|.+.+|.. ..+..+ ...+++.+=+.
T Consensus 364 ~~f~~~l~~~l~~~~~~~~-~LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L-~~l~vD~lKID 439 (518)
T PRK10551 364 DSFKADVQRLLASLPADHF-QIVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYL-ERFTLDYLKID 439 (518)
T ss_pred chHHHHHHHHHHhCCCCcc-eEEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHH-HhCCCCEEEEC
Confidence 3456677888888886532 2333333221 122456688899999998 566665542 223332 22356666555
Q ss_pred cCccccc--------ccchHHHHHHHhCCeEEec
Q 026625 186 WSLWARD--------IENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 186 ~n~~~~~--------~~~~l~~~~~~~gi~v~a~ 211 (235)
-+....- .-+.+++.|++.|+.+++-
T Consensus 440 ~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 440 RGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred HHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4433321 1145888899999888853
No 266
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=31.35 E-value=43 Score=29.27 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeE
Q 026625 39 LSEEDGISIIKHAFSKGITFF 59 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~ 59 (235)
.+.++.++++..|-+.||+.|
T Consensus 67 YT~~di~eiv~yA~~rgI~vI 87 (348)
T cd06562 67 YTPEDVKEIVEYARLRGIRVI 87 (348)
T ss_pred ECHHHHHHHHHHHHHcCCEEE
Confidence 588999999999999999977
No 267
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=31.24 E-value=41 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILL 74 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~l 74 (235)
..+.++.+++++.|-+.||+.|=-=+.-| +++..+
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PG--H~~a~~ 102 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPG--HSTAFV 102 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchH--HHHHHH
Confidence 46899999999999999998773222333 455443
No 268
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=31.12 E-value=3e+02 Score=22.63 Aligned_cols=74 Identities=20% Similarity=0.164 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCc-HHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYT-NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~-sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 118 (235)
++++...+.+.++++|..|+-|+..+..+. ..+.+ +.+++.-... +--|...-- .+.+....-++.-
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~~--vgvKaSGGI---------rt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGGR--VGVKASGGI---------RTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhccC--ceeeccCCc---------CCHHHHHHHHHHh
Confidence 567779999999999999999999665442 22222 2333211111 122222111 2577788888888
Q ss_pred HHHcCCC
Q 026625 119 LRRLDVE 125 (235)
Q Consensus 119 L~~Lg~~ 125 (235)
..|+|++
T Consensus 206 a~RiGtS 212 (228)
T COG0274 206 ATRIGTS 212 (228)
T ss_pred HHHhccc
Confidence 8999985
No 269
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=31.04 E-value=2.6e+02 Score=21.96 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHcCCccEEEeCCCCH--HHHHHHHhcCCeeEEeec
Q 026625 110 YVRSCCEASLRRLDVEYIDLYYQHRVDT--SVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 110 ~i~~~~~~sL~~Lg~~~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~~~~~~~~q~~ 185 (235)
.....+...++..+... +-+.+--++. ......+.+.+..+++.|- .+++.++.. ..++.+. ..+++++=+.
T Consensus 99 ~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~-~~~~d~iKld 174 (240)
T cd01948 99 DFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLK-RLPVDYLKID 174 (240)
T ss_pred HHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHH-hCCCCEEEEC
Confidence 34566777888887654 2233332322 2334468899999999998 577776542 3333333 3456666666
Q ss_pred cCccccc--------ccchHHHHHHHhCCeEEec
Q 026625 186 WSLWARD--------IENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 186 ~n~~~~~--------~~~~l~~~~~~~gi~v~a~ 211 (235)
.+.+..- .-..++..|+..|+.+++-
T Consensus 175 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 175 RSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred HHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 5554331 1156788888889888864
No 270
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.85 E-value=51 Score=27.39 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 026625 34 CYNSPLSEEDGISIIKHAFSKGI 56 (235)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi 56 (235)
.|....+++++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 57777899999999999999997
No 271
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=30.85 E-value=3.2e+02 Score=22.80 Aligned_cols=120 Identities=10% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeE--eCCCCCCCC-cHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFF--DTADKYGPY-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~--DtA~~Yg~g-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
.+.++..+.++.+.+.|++.| -++..+... ..++.+....+...+-.+.+....+. .+++.+
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~-----------~~~e~l---- 126 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL-----------LDPEQA---- 126 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCC-----------CCHHHH----
Confidence 355677777777788998753 222222211 12344443333222223333222111 233322
Q ss_pred HHHHHHcCCCcccEEEeccC------CCCCCHHHHHHHHHHHHHcCCcc----EEEeCCCCHHHHHHHHh
Q 026625 116 EASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPDTIRRAHA 175 (235)
Q Consensus 116 ~~sL~~Lg~~~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir----~iGvSn~~~~~l~~~~~ 175 (235)
+.|+..|++.+-+-+=..+ ......++.+++++.+++.|.-- -+|+ +.+.+++.+.+.
T Consensus 127 -~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~ 194 (296)
T TIGR00433 127 -KRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLAL 194 (296)
T ss_pred -HHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHH
Confidence 3566777765433211111 11235678899999999998522 2566 667666655543
No 272
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=30.83 E-value=3.1e+02 Score=26.11 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccE-EEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDL-YYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl-~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 174 (235)
......+++.+.|+.||+++ |- ... ....++...+++++|+++|+ ++ +|..+.+++++..
T Consensus 99 ~~~e~~d~IleDL~WLGl~w-De~~~~----QSdr~d~y~e~a~~Li~~G~--AY-~c~cs~eei~~~r 159 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSW-DVGPTY----SSDYMDLMYEKAEELIKKGL--AY-CDKTPREEMQKCR 159 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCC-CCceee----ccccHHHHHHHHHHHHHcCC--EE-EecCCHHHHHHHH
Confidence 44567788999999999864 31 111 22456788999999999999 45 8888888887654
No 273
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=30.45 E-value=2.1e+02 Score=20.70 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=41.6
Q ss_pred CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC--CCcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 026625 81 LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (235)
Q Consensus 81 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 154 (235)
.+|=.+.|+-|.+... ..+..+.+.++++++... +...|++++..+... .+..++.+.|.+|.+.
T Consensus 43 ~~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 43 HPRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred CceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3555678888854322 346777888877776543 235699999988643 4556666666666543
No 274
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.44 E-value=3.4e+02 Score=24.13 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccC
Q 026625 164 EASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 164 n~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
..+.+++++++.. .+..++..+.|+.-.-.+ +.+.+.|+++|+.++.=..++.|..
T Consensus 142 ~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 142 GEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 3467788877643 456666667777665444 7899999999999986555555543
No 275
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.40 E-value=42 Score=33.98 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCccEE-Ee-CCCC--HHHHHHHHhcCCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCc
Q 026625 141 IEETIGEMKKLVEEGKIKYI-GL-SEAS--PDTIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLG 215 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~i-Gv-Sn~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~ 215 (235)
-..++++|.++++.|+|..+ |= +.-. .+...-++.. .|-++.|-+.+.... +..+.||++.+++...+-+|.
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT---ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LD 675 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAIST---ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILD 675 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHH---hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehH
Confidence 34789999999999988754 11 1110 1233334433 466777777765422 789999999999999999986
Q ss_pred c
Q 026625 216 R 216 (235)
Q Consensus 216 ~ 216 (235)
.
T Consensus 676 k 676 (1293)
T KOG0996|consen 676 K 676 (1293)
T ss_pred h
Confidence 4
No 276
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=30.39 E-value=3.4e+02 Score=23.01 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHHHHHhcCCeeEEeecc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~ 186 (235)
++.+.+.++...+. +-+.+.-+-+...+...+.+.....++..++.|+--.+=++-. ..+.+..+++...++.+- ..
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~-H~ 217 (325)
T cd01320 140 PESAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIG-HG 217 (325)
T ss_pred HHHHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccc-hh
Confidence 45556666554432 2222222333333323345566667777777765444433321 234444444422222110 00
Q ss_pred CcccccccchHHHHHHHhCCeEE
Q 026625 187 SLWARDIENEIVPLCRELGIGIV 209 (235)
Q Consensus 187 n~~~~~~~~~l~~~~~~~gi~v~ 209 (235)
..+ ...++.++..+++||.+.
T Consensus 218 ~~l--~~~~~~~~~l~~~gi~v~ 238 (325)
T cd01320 218 IRA--IEDPELVKRLAERNIPLE 238 (325)
T ss_pred hcc--CccHHHHHHHHHcCCeEE
Confidence 001 112457888888888764
No 277
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=30.37 E-value=3e+02 Score=22.38 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
..++++..++++.|.+.|+.-+-+.+.|- ....+.| ....+-|+|=++.+... ...+.-....+.
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v-----~~a~~~l---~~~~v~v~tVigFP~G~-------~~~~~K~~e~~~ 82 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSYV-----KLAAELL---KGSDVKVCTVIGFPLGA-------NTTAVKAFEAKD 82 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHHH-----HHHHHHh---CCCCCeEEEEecccCCC-------ChHHHHHHHHHH
Confidence 35789999999999999999998887663 2333444 33567888877654421 112222233333
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEE--eCCCCHHHHHHHHhc---CCeeEEeeccCc
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIG--LSEASPDTIRRAHAV---HPITAVQLEWSL 188 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iG--vSn~~~~~l~~~~~~---~~~~~~q~~~n~ 188 (235)
++ ..|.+-||++.=-.......++.+.+.+.++++. +++-.+= .+-.+.+++.++.+. ...+++...-..
T Consensus 83 Ai-~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 83 AI-ANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred HH-HcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 33 4788999976433222234567788888888874 4322221 123455666665543 455666665443
No 278
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=30.34 E-value=2.3e+02 Score=20.99 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCC----CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 026625 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV----EYIDLYYQHRVDTS-VPIEETIGEMKKLVE 153 (235)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~----~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~ 153 (235)
+|=.+.|+-|++.. ..+..+.+.++++++.+.. ...|++++-.+... .+..++.+.|..+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 56678888887642 3477888888888876642 56899999988653 456666666666554
No 279
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=30.25 E-value=3.2e+02 Score=24.55 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHHHhcC----CeeEEeeccCccccccc--chHHHHHHHhCCeEEecc
Q 026625 167 PDTIRRAHAVH----PITAVQLEWSLWARDIE--NEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 167 ~~~l~~~~~~~----~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~s 212 (235)
.+.+++++... =+..+|-+-.+.....+ +.+.+.|.++|+-+|.=.
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DE 225 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDE 225 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEec
Confidence 45555555431 12345555555444333 778889999998877544
No 280
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=30.23 E-value=4e+02 Score=23.85 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc--CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHH
Q 026625 44 GISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (235)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 121 (235)
+.+-=-+|+|.|+--+-||..- + .+--++-. ..-|.++-++++.... ...+..+|++
T Consensus 66 vlE~RiAaLEGG~aa~a~aSG~----A--A~~~ai~~la~aGD~iVss~~LYGGT---------------~~lf~~tl~~ 124 (426)
T COG2873 66 VLEERIAALEGGVAALAVASGQ----A--AITYAILNLAGAGDNIVSSSKLYGGT---------------YNLFSHTLKR 124 (426)
T ss_pred HHHHHHHHhhcchhhhhhccch----H--HHHHHHHHhccCCCeeEeeccccCch---------------HHHHHHHHHh
Confidence 3444457899999998887533 2 23334444 4678888888876432 3457788999
Q ss_pred cCCC
Q 026625 122 LDVE 125 (235)
Q Consensus 122 Lg~~ 125 (235)
+|++
T Consensus 125 ~Gi~ 128 (426)
T COG2873 125 LGIE 128 (426)
T ss_pred cCcE
Confidence 9963
No 281
>PRK02227 hypothetical protein; Provisional
Probab=29.96 E-value=3.2e+02 Score=22.62 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCC-CCC--CcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADK-YGP--YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~-Yg~--g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 116 (235)
+.+|+ ..|++.|...||.=+. -|. ......+.+..+. -+...-||..++-.. ..+..+..++.
T Consensus 9 ~~eEA----~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~-~~~~~pvSAtiGD~p---------~~p~~~~~aa~ 74 (238)
T PRK02227 9 NLEEA----LEALAGGADIIDVKNPKEGSLGANFPWVIREIVAA-VPGRKPVSATIGDVP---------YKPGTISLAAL 74 (238)
T ss_pred CHHHH----HHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHH-hCCCCCceeeccCCC---------CCchHHHHHHH
Confidence 55666 5678999999998642 221 1344555544443 233356777776543 23444444432
Q ss_pred HHHHHcCCCcccEEEeccCCCCCC---HHHHHHHHHHHHHcCCccEEEeCCC------CHHHHHHHHhcCCeeEEeeccC
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQLEWS 187 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvSn~------~~~~l~~~~~~~~~~~~q~~~n 187 (235)
....-|.||+-+=+.-..+.... +...+++...+....++-.++++.+ ++..+-.+.....++.+++.--
T Consensus 75 -~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa 153 (238)
T PRK02227 75 -GAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA 153 (238)
T ss_pred -HHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc
Confidence 33456777776654422221111 1122333344445677888888886 4566666666677777777632
Q ss_pred c------ccc---cccchHHHHHHHhCCeE
Q 026625 188 L------WAR---DIENEIVPLCRELGIGI 208 (235)
Q Consensus 188 ~------~~~---~~~~~l~~~~~~~gi~v 208 (235)
. ++. .....+++.|+++|+-+
T Consensus 154 ~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 154 IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 2 222 11256788888888643
No 282
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.94 E-value=2.9e+02 Score=22.14 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=17.3
Q ss_pred cchHHHHHHHhCCeEEeccc
Q 026625 194 ENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~sp 213 (235)
..++++.++++|+.|.+|..
T Consensus 190 ~~~~v~~~~~~G~~v~~wTv 209 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTV 209 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeC
Confidence 36899999999999999974
No 283
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=29.94 E-value=1.8e+02 Score=24.66 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCcccEEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHh
Q 026625 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (235)
Q Consensus 111 i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~ 175 (235)
.++.+.-.+.-++ ..++++|.-|....+. .++++.|.++.++|. +.|=+|+|..+.++.+..
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 4444444444444 4699999999776553 478999999999987 678899999999988754
No 284
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=29.82 E-value=55 Score=27.94 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcC---CCeEeCCCCCCC-CcHHHHHHHHHhc
Q 026625 42 EDGISIIKHAFSKG---ITFFDTADKYGP-YTNEILLGKALKE 80 (235)
Q Consensus 42 ~~~~~~l~~A~~~G---i~~~DtA~~Yg~-g~sE~~lG~al~~ 80 (235)
..|.++++.|-+.| ++||||+-.|-. +--|+--++++.+
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~ 179 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIAR 179 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHH
Confidence 56888999999999 479999999954 3344445555544
No 285
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=29.78 E-value=2.8e+02 Score=22.11 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=53.6
Q ss_pred HHcCCCcccEEEec-cCCC-CCC----HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc
Q 026625 120 RRLDVEYIDLYYQH-RVDT-SVP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI 193 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh-~~~~-~~~----~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 193 (235)
..-|.++||+=--- +|.. ..+ ++.+...++.+++...=--+.+-+++++.++++++. ..+++-...+.-.
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED--- 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc---
Confidence 44588999984322 2221 122 223445555555411112577778999999999887 4433332222211
Q ss_pred cchHHHHHHHhCCeEEecccC
Q 026625 194 ENEIVPLCRELGIGIVPYCPL 214 (235)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~spl 214 (235)
.+++++.++++|..++++.--
T Consensus 105 ~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp STTHHHHHHHHTSEEEEESES
T ss_pred cchhhhhhhcCCCEEEEEecc
Confidence 478999999999999987644
No 286
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.72 E-value=1.6e+02 Score=24.07 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHH-HHcCCccEEEeCC-CCHHHHHHHHhcC-CeeEEee
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKL-VEEGKIKYIGLSE-ASPDTIRRAHAVH-PITAVQL 184 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l-~~~G~ir~iGvSn-~~~~~l~~~~~~~-~~~~~q~ 184 (235)
++...+ +-+.|-+-|+..+.+-+ -. ....+.++.|.+- .++.-=-.||+.+ .+.++++.+++.. .| +
T Consensus 26 ~~~a~~-~~~al~~gGi~~iEiT~---~t--p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F--i-- 95 (222)
T PRK07114 26 VEVAKK-VIKACYDGGARVFEFTN---RG--DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF--I-- 95 (222)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeC---CC--CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE--E--
Confidence 444443 33456666766555533 11 1223444444322 2332113588865 5788888888763 33 1
Q ss_pred ccCcccccccchHHHHHHHhCCeEEe
Q 026625 185 EWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 185 ~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
+.+....+++++|+++||.++.
T Consensus 96 ----VsP~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 96 ----VTPLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred ----ECCCCCHHHHHHHHHcCCCEeC
Confidence 1122347899999999988873
No 287
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=29.70 E-value=2.3e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCCeEeC
Q 026625 41 EEDGISIIKHAFSKGITFFDT 61 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~Dt 61 (235)
+|...+.++.|++.|.+.|++
T Consensus 13 pENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 13 PENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred CcchHHHHHHHHHcCcCEEEE
Confidence 377789999999999998864
No 288
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=29.69 E-value=4.4e+02 Score=24.16 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGL 162 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGv 162 (235)
.+++.+.+.++...++.|+..+ .+...........+.+.++++++.| .--.+++
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~ 276 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGI 276 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4788899999888888886543 3332222233445667777777776 3233444
No 289
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.68 E-value=3.9e+02 Score=23.47 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=57.7
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcC-C---ccEEEeC--CCCHHHHHHHHh---cCCeeEEeeccCc
Q 026625 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG-K---IKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSL 188 (235)
Q Consensus 129 l~~lh~~~~~-----------~~~~~~~~~l~~l~~~G-~---ir~iGvS--n~~~~~l~~~~~---~~~~~~~q~~~n~ 188 (235)
.+-||.|++. .+++++.+++.++.+.. . +-++=+. |-+.+++.++.+ ..+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4788988542 34788889998876543 2 3334333 555665555544 3567889999997
Q ss_pred ccc-----ccc---chHHHHHHHhCCeEEecccCcc
Q 026625 189 WAR-----DIE---NEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 189 ~~~-----~~~---~~l~~~~~~~gi~v~a~spl~~ 216 (235)
... ... ..+.+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 543 111 4567778899999999888744
No 290
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.50 E-value=73 Score=27.16 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=14.7
Q ss_pred chHHHHHHHhCCeEEe
Q 026625 195 NEIVPLCRELGIGIVP 210 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a 210 (235)
.+++++|+++||.|+.
T Consensus 75 ~elv~yA~~rgI~viP 90 (303)
T cd02742 75 KDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 7899999999999994
No 291
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=29.49 E-value=4.4e+02 Score=23.99 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC-CCcccEEEeccCCC
Q 026625 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVDT 137 (235)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~~~iDl~~lh~~~~ 137 (235)
-.|| .|+.+-++|++ .+.+=++|.|-.-..- --+.+..-+++.-++.. ...+.++.++.|+.
T Consensus 72 ~VfG---g~~~L~~aI~~~~~~~~P~~I~V~ttC~~ei----------IGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF 138 (455)
T PRK14476 72 TILG---GDENVEEAILNICKKAKPKIIGLCTTGLTET----------RGDDVAGALKEIRARHPELADTPIVYVSTPDF 138 (455)
T ss_pred eEeC---CHHHHHHHHHHHHHhhCCCEEEEeCcchHhh----------hhccHHHHHHHHHhhccccCCCeEEEecCCCC
Confidence 5777 67777888877 2334455555432111 11222222222222221 11367888998876
Q ss_pred CCC----HHHHHHHHHH-HH--------HcCCccEEEeCCC---CHHHHHHHHhcCCeeEEee
Q 026625 138 SVP----IEETIGEMKK-LV--------EEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 138 ~~~----~~~~~~~l~~-l~--------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~q~ 184 (235)
... .+.+++++.+ +. +.++|.-||-+++ +.+++.++++...+.++.+
T Consensus 139 ~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~l 201 (455)
T PRK14476 139 KGALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIIL 201 (455)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEe
Confidence 433 2234444432 22 2456888875544 4566777777666665543
No 292
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=29.47 E-value=1.3e+02 Score=26.80 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=37.3
Q ss_pred CcceeccccCCC----CCCCC-CCHHHHHHHHHHHHHcCCCeEeCCC----CCCCCcHH-----HHHHHHHhc
Q 026625 22 SKLGYGCMSLSG----CYNSP-LSEEDGISIIKHAFSKGITFFDTAD----KYGPYTNE-----ILLGKALKE 80 (235)
Q Consensus 22 s~lg~G~~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA~----~Yg~g~sE-----~~lG~al~~ 80 (235)
.+++||.|.+|+ .||.+ .+.....+.++.+-+.|+..|.... .|+....| +.+.++|++
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~ 79 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDE 79 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 368889888864 23433 3344567888999999999887652 24432222 246666654
No 293
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=29.38 E-value=4.3e+02 Score=23.89 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHc-CCCeEeCCCCCCCC--cHHHHH---HHHHhcCCCC-CEEEEeccccccCCCcccccCCCHHHH
Q 026625 39 LSEEDGISIIKHAFSK-GITFFDTADKYGPY--TNEILL---GKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g--~sE~~l---G~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
.+.++..++++..-+. |++-+=-+. |+. .+...+ -+.|++++.= .+-|.|++.... +..+
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSG--GDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~-----------P~RI 204 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSG--GDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL-----------PQRI 204 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeC--CccccCChHHHHHHHHHHhhcCCCceEEEeecccccc-----------cccc
Confidence 4678888888877764 887432221 110 122222 3344445443 367888865443 3334
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEe-------CCCCHHHHHHHHh
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-------SEASPDTIRRAHA 175 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-------Sn~~~~~l~~~~~ 175 (235)
...+-..|++.+ .-.+.+|.-.+..-..++.++++.|++.|.. ++. -|-+++.+.++..
T Consensus 205 T~ell~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~--l~nQsVLLkGVND~~~~l~~L~~ 270 (417)
T TIGR03820 205 TDELVAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGIP--LGNQSVLLAGVNDCPRIMKKLVH 270 (417)
T ss_pred CHHHHHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCCE--EEeeceEECCcCCCHHHHHHHHH
Confidence 444545566665 3445577665555567899999999999953 222 2556666666654
No 294
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.22 E-value=3.8e+02 Score=23.18 Aligned_cols=132 Identities=17% Similarity=0.066 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCC----------CCCCC--cHHHHHHHHHhc---CCCCCEEEEeccccccCCCccccc
Q 026625 40 SEEDGISIIKHAFSKGITFFDTAD----------KYGPY--TNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIV 104 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~----------~Yg~g--~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~~~~~ 104 (235)
+++...+.-+.+.+.|+..||--- .+|.. .+-..+.+.++. .-. ++-|+.|....+.+
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~------ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDD------ 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCc------
Confidence 568888888999999999888532 22211 244566666665 112 67888888654421
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCC-ccEEEeCC-CCHHHHHHHHhcCCee
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPIT 180 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~-ir~iGvSn-~~~~~l~~~~~~~~~~ 180 (235)
.+.....+.+.++.-| +|.+.+|.-...... ..-|+.+.++++.=. |--||=.+ +++++..+.++....+
T Consensus 150 ---~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D 223 (323)
T COG0042 150 ---DDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223 (323)
T ss_pred ---ccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC
Confidence 1123334555666666 578999977432211 146888888888755 66666554 6888888888876666
Q ss_pred EEee
Q 026625 181 AVQL 184 (235)
Q Consensus 181 ~~q~ 184 (235)
-+++
T Consensus 224 gVMi 227 (323)
T COG0042 224 GVMI 227 (323)
T ss_pred EEEE
Confidence 6655
No 295
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=29.20 E-value=2.5e+02 Score=25.65 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-------CC-eeEEeeccCcccccccchHHHHHHHhCCeEEecc
Q 026625 146 GEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-------HP-ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 146 ~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-------~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (235)
+-...+-+.|-..++|....+++++++.+.. .+ +.+|-+ ++.-+...+..+++.|.++++.++..+
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 3334455779999999999999988877643 13 444443 222122223578999999999988665
No 296
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.96 E-value=1.8e+02 Score=19.51 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=37.0
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEeCCCC-HHHHHHHHhcCCeeEEeecc
Q 026625 124 VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEAS-PDTIRRAHAVHPITAVQLEW 186 (235)
Q Consensus 124 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~-~~~l~~~~~~~~~~~~q~~~ 186 (235)
....|++++....+... ..+.++++++.+ .++-|-+++.. .....++++..-.+++.-++
T Consensus 41 ~~~~d~iiid~~~~~~~---~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 41 KHPPDLIIIDLELPDGD---GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HSTESEEEEESSSSSSB---HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred ccCceEEEEEeeecccc---ccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 34499999986655443 445555666655 78888888654 46666666554444444443
No 297
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=28.85 E-value=3.8e+02 Score=23.15 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CCCCCCCC--cHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCC
Q 026625 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 106 (235)
+.++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++... .-.+-|+.|....... ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~------~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD------QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC------Cc
Confidence 677778888888899999888 44556631 22344555555421 1146677776322211 11
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCC-CCCH---------HHHHHHHHHHHHcC-CccEEEeCC-CCHHHHHHHH
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPI---------EETIGEMKKLVEEG-KIKYIGLSE-ASPDTIRRAH 174 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-~~~~---------~~~~~~l~~l~~~G-~ir~iGvSn-~~~~~l~~~~ 174 (235)
+..... .+-+.++..| +|.+.+|.... .... ...|+.+.++++.- .|--||... ++++++.+++
T Consensus 149 t~~~~~-~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEFLC-DFVDTVAEAG---CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHHHH-HHHHHHHHhC---CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 222222 2334456666 57778885421 0000 02377777787763 677777655 4678888777
Q ss_pred hcCCeeEEee
Q 026625 175 AVHPITAVQL 184 (235)
Q Consensus 175 ~~~~~~~~q~ 184 (235)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 63 455554
No 298
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=28.69 E-value=4.3e+02 Score=23.69 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=54.2
Q ss_pred HHHHHHHHHhc----C-CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCC--cccEEEeccCCCCCC--
Q 026625 70 NEILLGKALKE----L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE--YIDLYYQHRVDTSVP-- 140 (235)
Q Consensus 70 sE~~lG~al~~----~-~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~--~iDl~~lh~~~~~~~-- 140 (235)
.|+.+.+++++ . ..+=++|.|-.. ++-|=..++...+.+... -+.++.+|.|.....
T Consensus 80 g~~~L~~ai~ei~~~~~~P~~I~V~tTC~--------------~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~ 145 (427)
T PRK02842 80 ANEELDRVVEELIKRRPNISVLFLVGSCP--------------SEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFT 145 (427)
T ss_pred cHHHHHHHHHHHHhccCCCCEEEEECCCh--------------HHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHH
Confidence 67777788877 2 233456666443 222333333444444332 367888888876543
Q ss_pred --HHHHHHHHHHHH-----HcCCccEEEeCCC-CHHHHHHHHhcCCeeEE
Q 026625 141 --IEETIGEMKKLV-----EEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (235)
Q Consensus 141 --~~~~~~~l~~l~-----~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~ 182 (235)
.+.+++++-+.. ..+.|.-+|..|- +..++.++++...+.++
T Consensus 146 ~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~ 195 (427)
T PRK02842 146 QGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVV 195 (427)
T ss_pred HHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeE
Confidence 233444443333 2456777887553 23567777777666554
No 299
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=28.64 E-value=4.1e+02 Score=23.43 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=50.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhC
Q 026625 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG 205 (235)
Q Consensus 128 Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~g 205 (235)
|-+++-.|.. ...+..+..+...+-+...-+...+.+.+++++.. .++.++..+.|+.-.-.+ .++.+.|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5555554432 23444455554444333333444567777776643 445555555555333222 67889999999
Q ss_pred CeEEecccCccccC
Q 026625 206 IGIVPYCPLGRGFF 219 (235)
Q Consensus 206 i~v~a~spl~~G~L 219 (235)
+-++.=..++.+.+
T Consensus 168 ~~vivDeay~~~~~ 181 (386)
T PRK08045 168 AVSVVDNTFLSPAL 181 (386)
T ss_pred CEEEEECCCCcccc
Confidence 98887666665543
No 300
>PLN02907 glutamate-tRNA ligase
Probab=28.56 E-value=2.8e+02 Score=27.03 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 174 (235)
.......+++.+.|+-||+++ |-.. -....++...+..++|+++|+. + +|..+.+++.+..
T Consensus 259 r~~~e~~~~I~~dl~wLG~~~-d~~~----~qS~r~~~y~~~a~~Li~~G~a--Y-~~~~~~~~~~~~~ 319 (722)
T PLN02907 259 KESDEFVENILKDIETLGIKY-DAVT----YTSDYFPQLMEMAEKLIKEGKA--Y-VDDTPREQMRKER 319 (722)
T ss_pred cCChHHHHHHHHHHHHcCCCC-CCcc----cccccHHHHHHHHHHHHHcCCe--e-ecCCCHHHHHHHH
Confidence 345667788999999999976 5221 2234577889999999999984 3 4677777776654
No 301
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=28.35 E-value=2.3e+02 Score=20.50 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=43.9
Q ss_pred CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 026625 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV---EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (235)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 154 (235)
+|=.+.|+-|++... ..+..+.+.+++.++.+.. ...|++++-.+... .+..+..+.|..|.+.
T Consensus 47 ~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 455677777755322 3477788888888776532 35799999888654 5677888888777654
No 302
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=28.34 E-value=2.9e+02 Score=22.36 Aligned_cols=129 Identities=20% Similarity=0.117 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHH-----HHHHHH
Q 026625 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV-----RSCCEA 117 (235)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i-----~~~~~~ 117 (235)
+..+.++.|++.|++-+-+.+.|. ....+.+. ..+-.+-+.-++.... ...+.- ...+++
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~-~~~~~~~~vi~fp~g~---------~~~~~k~~~~~~~~ve~ 84 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLA-GSGVKVGLVIGFPFGT---------STTEPKGYDQIVAEVEE 84 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHST-TSTSEEEEEESTTTSS---------STHHHHTCEEEHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhh-ccccccceEEEeCCCC---------CccccccccchHHHHHH
Confidence 889999999999999999988884 22233333 1122444444443221 112222 345555
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc---CCccEEEeCCCCHH---------HHHHHHhc---CCeeEE
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASPD---------TIRRAHAV---HPITAV 182 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvSn~~~~---------~l~~~~~~---~~~~~~ 182 (235)
. -++|.|-+|+++-..+..........+.+.+++++ --+..|--+..... .+..+.+. ...|++
T Consensus 85 A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~v 163 (236)
T PF01791_consen 85 A-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFV 163 (236)
T ss_dssp H-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEE
T ss_pred H-HHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEE
Confidence 4 47899999999888554333455566666666554 22333333332222 34444433 567777
Q ss_pred eeccC
Q 026625 183 QLEWS 187 (235)
Q Consensus 183 q~~~n 187 (235)
...+.
T Consensus 164 Kt~tg 168 (236)
T PF01791_consen 164 KTSTG 168 (236)
T ss_dssp EEE-S
T ss_pred EecCC
Confidence 77766
No 303
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=28.24 E-value=2e+02 Score=20.47 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 163 SEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 163 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
+..+.+.++.+... +++++-+-..--......++.++++++||++..+..
T Consensus 38 ~~l~~e~l~~l~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 38 EDLTAAHFEALLAL-QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred ccCCHHHHHHHHhc-CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 34456666666554 244444432222222236788899999998887653
No 304
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=28.21 E-value=3.7e+02 Score=22.78 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHcCCC--------------------------cccEEEeccCCCCCC---HHHHHHHHHHHHHcCC
Q 026625 106 GTPEYVRSCCEASLRRLDVE--------------------------YIDLYYQHRVDTSVP---IEETIGEMKKLVEEGK 156 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~--------------------------~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ 156 (235)
.....+.+.++.-|+|+.+. ..|++.|.-|....+ .+-.-++..+++++|.
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~Ga 181 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCC
Confidence 34566777777777777642 456666666655432 3345567778999998
Q ss_pred ccEEEeCCCCHHHHHHHHhc
Q 026625 157 IKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 157 ir~iGvSn~~~~~l~~~~~~ 176 (235)
.|=+|+|..++++++...
T Consensus 182 --tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 182 --TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --EEEEecchHHHHHHHhhh
Confidence 788999999999998764
No 305
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=28.09 E-value=48 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCeEeCCCCC
Q 026625 46 SIIKHAFSKGITFFDTADKY 65 (235)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y 65 (235)
..+...++.|||+||---.+
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~ 49 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWD 49 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEc
Confidence 57899999999999876444
No 306
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=28.07 E-value=4e+02 Score=23.42 Aligned_cols=54 Identities=6% Similarity=0.075 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCcccc
Q 026625 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
.+.+.+++++.. ....++..+-|+.-...+ +++.+.|+++|+.++.=+..+.+.
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~ 177 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPY 177 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccc
Confidence 457777776643 344455556665433323 688999999999998766666543
No 307
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=28.07 E-value=1.4e+02 Score=26.59 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcC-CccEEEeCCC---CHHHHHHHHhc-CCeeEEeeccCccccc-ccchHHHHHHHhCCeEEecccCcc
Q 026625 143 ETIGEMKKLVEEG-KIKYIGLSEA---SPDTIRRAHAV-HPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 143 ~~~~~l~~l~~~G-~ir~iGvSn~---~~~~l~~~~~~-~~~~~~q~~~n~~~~~-~~~~l~~~~~~~gi~v~a~spl~~ 216 (235)
.+++.+..|..+| .|.++.|-+. +.+++++++.- ..++.++.--|-.-.- +-.++-+.|+++|+-+..=..=+-
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~ 182 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAV 182 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhc
Confidence 6788888887778 6888888764 46777777753 2344444333322211 127888999999987776554444
Q ss_pred cc
Q 026625 217 GF 218 (235)
Q Consensus 217 G~ 218 (235)
|.
T Consensus 183 Gk 184 (386)
T COG1104 183 GK 184 (386)
T ss_pred Cc
Confidence 43
No 308
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.06 E-value=2.6e+02 Score=25.05 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=56.7
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC-CCcccEEEeccCCC
Q 026625 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVDT 137 (235)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~~~iDl~~lh~~~~ 137 (235)
-.|| .|+.+-++|++ .+.+-++|.|-....- --+.+..-+++.-++.- ...+.++.+|.|+.
T Consensus 61 ~VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~ei----------IGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf 127 (417)
T cd01966 61 TILG---GGENLEEALDTLAERAKPKVIGLLSTGLTET----------RGEDIAGALKQFRAEHPELADVPVVYVSTPDF 127 (417)
T ss_pred EEEC---CHHHHHHHHHHHHHhcCCCEEEEECCCcccc----------cccCHHHHHHHHHhhccccCCCeEEEecCCCC
Confidence 4677 66777777776 3445566666544322 12223333333333310 01367899998876
Q ss_pred CCC----HHHHHHHHHH-H--------HHcCCccEEEeCCCCH---HHHHHHHhcCCeeEEe
Q 026625 138 SVP----IEETIGEMKK-L--------VEEGKIKYIGLSEASP---DTIRRAHAVHPITAVQ 183 (235)
Q Consensus 138 ~~~----~~~~~~~l~~-l--------~~~G~ir~iGvSn~~~---~~l~~~~~~~~~~~~q 183 (235)
... .+.++++|.+ + ...++|.-||-++.++ +++.++++...+.++-
T Consensus 128 ~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 128 EGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 532 2334444432 2 1245688887655444 4566666665555544
No 309
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=28.03 E-value=53 Score=27.63 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCH
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 167 (235)
+.+.+..++.|-... +..=+.=+..-| +....-..|++|++.| +-||.||+.
T Consensus 66 ~iv~em~~eiLp~v~-~tPViaGv~atD---P~~~~~~fl~~lk~~G---f~GV~NfPT 117 (268)
T PF09370_consen 66 EIVMEMAREILPVVK-DTPVIAGVCATD---PFRDMDRFLDELKELG---FSGVQNFPT 117 (268)
T ss_dssp HHHHHHHHHHGGG-S-SS-EEEEE-TT----TT--HHHHHHHHHHHT----SEEEE-S-
T ss_pred HHHHHHHHhhhhhcc-CCCEEEEecCcC---CCCcHHHHHHHHHHhC---CceEEECCc
Confidence 444444466666654 222222233333 3456778888888887 579999873
No 310
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.98 E-value=2.6e+02 Score=27.57 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEeCCCCHHHHHHHHhcCCeeEEeec
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~ 185 (235)
-+.+++-++...........-+|+|+..+... ...+++|.+..++ ..+++|-++|.....+.-+.. .|.++.
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrS----RCq~f~ 174 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLS----RCLQFN 174 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCC--HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhh----heEEEe
Confidence 34455555443322222345788887665432 3567888777777 589999999975433333222 255666
Q ss_pred cCccccccc-chHHHHHHHhCCe
Q 026625 186 WSLWARDIE-NEIVPLCRELGIG 207 (235)
Q Consensus 186 ~n~~~~~~~-~~l~~~~~~~gi~ 207 (235)
|..+....- .-+...|++.||.
T Consensus 175 Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 175 LKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCC
Confidence 666554211 2233445555554
No 311
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=27.80 E-value=3.8e+02 Score=22.77 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=47.1
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC-----CCCHHHHHHHHhcC-------CeeEEeeccCccccc
Q 026625 125 EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-----EASPDTIRRAHAVH-------PITAVQLEWSLWARD 192 (235)
Q Consensus 125 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-----n~~~~~l~~~~~~~-------~~~~~q~~~n~~~~~ 192 (235)
+.-|.+++..|... ...+.++.+ ...+..+-+. ..+.+.+++.++.. .+.++-.++|+.-..
T Consensus 91 ~~~~~vlv~~P~y~----~~~~~~~~~--g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~ 164 (363)
T PF00155_consen 91 NPGDTVLVPDPCYP----SYIEAARLL--GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSV 164 (363)
T ss_dssp STTSEEEEEESSST----HHHHHHHHT--TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB
T ss_pred cccccceecCCccc----ccccccccc--Cceeeeccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 34577888777542 233333322 1224444443 45788888877652 233444445543332
Q ss_pred cc----chHHHHHHHhCCeEEecccCc
Q 026625 193 IE----NEIVPLCRELGIGIVPYCPLG 215 (235)
Q Consensus 193 ~~----~~l~~~~~~~gi~v~a~spl~ 215 (235)
.. .++++.|+++++-++.=....
T Consensus 165 ~~~~~l~~l~~~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 165 LSLEELRELAELAREYNIIIIVDEAYS 191 (363)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEEETTT
T ss_pred cccccccchhhhhcccccceeeeecee
Confidence 11 567888999999998544443
No 312
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.63 E-value=2.2e+02 Score=27.53 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEeCCCCHHHHHHHH
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPDTIRRAH 174 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~ 174 (235)
-+.+++-++.....-....--+|+++..+... ...+++|.+..++ +.+.+|.++|....-+.-+.
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls--~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcC--HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 45555555544333233456788888665432 3677888887777 89999999997644443333
No 313
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=27.58 E-value=1e+02 Score=26.26 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHcCCCccc--EEE-eccCCCCCCHHHHHHHHHHHHHcCCccE
Q 026625 108 PEYVRSCCEASLRRLDVEYID--LYY-QHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iD--l~~-lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (235)
.+...+.+.+.+++||++. | .++ =+.+ ...+.+++.+++|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 4567788899999999853 4 322 2222 235679999999999998754
No 314
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=27.52 E-value=3.5e+02 Score=25.28 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 174 (235)
......+++.+.|+-||+++ |-. .-....++...+++++|+++|+. | +|..+.+++++..
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~eel~~~r 117 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLA-Y--MDDTPQEEMKKER 117 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCe-E--ecCCCHHHHHHHH
Confidence 34567778999999999975 521 12234577889999999999984 2 4566678876654
No 315
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=27.41 E-value=2.1e+02 Score=25.50 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=41.4
Q ss_pred cHHHHHHHHHhcCCCCCEEEEeccccccCCC-cccccCCC----HHHHHHHHHHHHHHcCCCcccEEEeccCCCC
Q 026625 69 TNEILLGKALKELPRENIQVATKFGFVELGF-TSVIVKGT----PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (235)
Q Consensus 69 ~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~-~~~~~~~~----~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~ 138 (235)
.++..+.+.+++....=+||-||+-..-... ......++ -+.|++.+.+.|++-|+....+|++-+.+..
T Consensus 128 ~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 128 ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 5888899999876666788999986421100 00011122 3567777888888889999999999887654
No 316
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.40 E-value=4.9e+02 Score=23.95 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCC
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
.++.++..++.+...+.|+..|+....
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p 46 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSA 46 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 357788899999999999999999753
No 317
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=27.31 E-value=3.2e+02 Score=21.70 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.0
Q ss_pred chHHHHHHHhCCeEEeccc
Q 026625 195 NEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a~sp 213 (235)
.++++.++++|+.|.+|..
T Consensus 189 ~~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5799999999999999965
No 318
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=27.21 E-value=1.3e+02 Score=25.85 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 35 YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 35 ~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
||.+-+.++-.++++..-+.|.|.+ .|+ |.++.+...|+.-.. ..+. .+.
T Consensus 8 YG~PWs~e~R~~l~~f~~~~kmN~Y----iYA---------------PKdDpyhr~~Wre~Y----------p~~e-l~~ 57 (306)
T PF07555_consen 8 YGRPWSHEDRLDLIRFLGRYKMNTY----IYA---------------PKDDPYHRSKWREPY----------PEEE-LAE 57 (306)
T ss_dssp SSS---HHHHHHHHHHHHHTT--EE----EE-----------------TT-TTTTTTTTS-------------HHH-HHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceE----EEC---------------CCCChHHHhhhcccC----------CHHH-HHH
Confidence 6666678888999999999999977 565 233333333433222 1222 233
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCCccEEEeC
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
+++..+.=....+|+++-=.|.... .++.+...++++.+.| ||.+||.
T Consensus 58 l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Fail 111 (306)
T PF07555_consen 58 LKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAIL 111 (306)
T ss_dssp HHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE
T ss_pred HHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 3333333333456776655564432 3456777888888885 6788875
No 319
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=27.02 E-value=4e+02 Score=22.77 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCC----CcHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGP----YTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~----g~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
.+.++..++++.+.+.|+..|.-+. |. ..-.+++.. +++.+ -+++.|+|-... +.+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~gi~~v~itTNG~l----------------l~~ 103 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALPGIEDIALTTNGLL----------------LAR 103 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcCCCCeEEEEeCchh----------------HHH
Confidence 6789999999999999998776432 11 012233332 23222 126677774221 111
Q ss_pred HHHHHHHHcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHcCCc----cEEEeCCCCHHHHHHHHhc---C
Q 026625 114 CCEASLRRLDVEYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPDTIRRAHAV---H 177 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~G~i----r~iGvSn~~~~~l~~~~~~---~ 177 (235)
.-..|.+.|++++- +-++..++ ...++.+++.++.+++.|.- ..+-+.+.+.+++.++++. .
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~ 181 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKER 181 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 22345566655433 23444332 12578899999999998852 2233345666666665543 3
Q ss_pred CeeEEeeccCcc
Q 026625 178 PITAVQLEWSLW 189 (235)
Q Consensus 178 ~~~~~q~~~n~~ 189 (235)
++.+.-++|.++
T Consensus 182 gv~~~~ie~mp~ 193 (334)
T TIGR02666 182 GVTLRFIELMPL 193 (334)
T ss_pred CCeEEEEeccCC
Confidence 444333344443
No 320
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.01 E-value=4.4e+02 Score=23.21 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=70.5
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCCC-------------------CCCCCcHH---HHHHH---HHhcCCCCCE
Q 026625 39 LSEEDGISIIK-------HAFSKGITFFDTAD-------------------KYGPYTNE---ILLGK---ALKELPRENI 86 (235)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA~-------------------~Yg~g~sE---~~lG~---al~~~~R~~~ 86 (235)
.+.+++.++++ .|.++|+..++.-. .|| |.-| +++-+ ++++.-.+++
T Consensus 134 mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYG-GslenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 134 MTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYG-GSLAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56666665555 45678999886542 233 2323 22223 3333234577
Q ss_pred EEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEe-ccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC-
Q 026625 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE- 164 (235)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~l-h~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn- 164 (235)
.|..|+......+.......+++...+-+ ..|+..|+|+|++-.- ++.+.... ..+....+.++.-.+.-+++..
T Consensus 213 ~v~vRis~~~~~~~~~~~g~~~~e~~~~~-~~l~~~gvd~i~vs~g~~~~~~~~~--~~~~~~~~~k~~~~~pv~~~G~i 289 (361)
T cd04747 213 PIILRFSQWKQQDYTARLADTPDELEALL-APLVDAGVDIFHCSTRRFWEPEFEG--SELNLAGWTKKLTGLPTITVGSV 289 (361)
T ss_pred eEEEEECcccccccccCCCCCHHHHHHHH-HHHHHcCCCEEEecCCCccCCCcCc--cchhHHHHHHHHcCCCEEEECCc
Confidence 78888874211100000123455443333 3467778777665221 11111111 1122233344444455555544
Q ss_pred ------------------CCHHHHHHHHhcCCeeEEee
Q 026625 165 ------------------ASPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 165 ------------------~~~~~l~~~~~~~~~~~~q~ 184 (235)
.+++..+++++....|.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 290 GLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred ccccccccccccccccccCCHHHHHHHHHCCCCCeehh
Confidence 47888999888766666554
No 321
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.94 E-value=45 Score=25.88 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcC-CccEEEeCCCC--HHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEe
Q 026625 141 IEETIGEMKKLVEEG-KIKYIGLSEAS--PDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G-~ir~iGvSn~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
..+.+++|.++++.+ +|..+|..|.. ...+.+++ .+.+.+..|+-.+. -...+..+++.|+.++.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll---~~~i~~~~~~~~~e--~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL---GVDIKIYPYDSEEE--IEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH---T-EEEEEEESSHHH--HHHHHHHHHHTT--EEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh---CCceEEEEECCHHH--HHHHHHHHHHcCCcEEE
Confidence 446777887777555 56666666543 45565655 34555555542111 15677777778877775
No 322
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=26.93 E-value=3.2e+02 Score=21.60 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 118 (235)
...++..++++.|.+.|+.-+-+.+.+- + ...+.++ ...+.+.+=.+..... ...+....+++++
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v----~-~~~~~l~---~~~~~v~~~~~fp~g~-------~~~~~k~~eve~A 78 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV----P-LAREALK---GSGVKVCTVIGFPLGA-------TTTEVKVAEAREA 78 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH----H-HHHHHcC---CCCcEEEEEEecCCCC-------CcHHHHHHHHHHH
Confidence 4779999999999999988887776442 2 2333443 2346666655443311 2345566667777
Q ss_pred HHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCccE--EEeCCCCHHHHHHHHhc---CCeeEEeec--cCcc
Q 026625 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKY--IGLSEASPDTIRRAHAV---HPITAVQLE--WSLW 189 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~--iGvSn~~~~~l~~~~~~---~~~~~~q~~--~n~~ 189 (235)
++ +|.|-+|+++--..-.....+..++.+.++++. |+.-. +...-.+.+++..+.+. ...+++... |..-
T Consensus 79 ~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~ 157 (203)
T cd00959 79 IA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPG 157 (203)
T ss_pred HH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCC
Confidence 76 699999997765433234456677888887776 43222 23344556666666544 566778877 6433
Q ss_pred ccccc-chHH-HHHHHhCCeEEe
Q 026625 190 ARDIE-NEIV-PLCRELGIGIVP 210 (235)
Q Consensus 190 ~~~~~-~~l~-~~~~~~gi~v~a 210 (235)
....+ -.++ +.++ ..++|.+
T Consensus 158 ~at~~~v~~~~~~~~-~~v~ik~ 179 (203)
T cd00959 158 GATVEDVKLMKEAVG-GRVGVKA 179 (203)
T ss_pred CCCHHHHHHHHHHhC-CCceEEE
Confidence 32222 1223 3333 4566655
No 323
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=26.81 E-value=5e+02 Score=23.86 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc-CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~-~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
.+++-....++.|.+.|+..|=+.+.-.+-++-+..-++.++ ...-++.|+-...+ ..+.+.+.+.+++
T Consensus 102 ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp----------~~t~~y~~~~a~~ 171 (468)
T PRK12581 102 YADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP----------VHTLNYYLSLVKE 171 (468)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC----------cCcHHHHHHHHHH
Confidence 355777788999999999877665544322222222233332 22112333333222 1345666665554
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCC
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~ 166 (235)
+..+|.+ .+.+-..--.....++.+.+..+++...+ -||+=.|+
T Consensus 172 -l~~~Gad---~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hn 215 (468)
T PRK12581 172 -LVEMGAD---SICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHA 215 (468)
T ss_pred -HHHcCCC---EEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCC
Confidence 4567754 44444332233445666666666654433 46776554
No 324
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.65 E-value=74 Score=27.59 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILL 74 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~l 74 (235)
-.+.++.+++++.|-+.||+.|=-=+.-| ++...+
T Consensus 71 ~YT~~di~elv~yA~~rgI~vIPEiD~PG--H~~a~~ 105 (329)
T cd06568 71 YYTQEDYKDIVAYAAERHITVVPEIDMPG--HTNAAL 105 (329)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCCcH--HHHHHH
Confidence 36899999999999999999873333333 555544
No 325
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=26.61 E-value=4.2e+02 Score=22.89 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCccEEEeCC---------CCHHHHHHHHhcCCeeEEee-ccCcccc-cc-cchHHHHHHHhCCeEEec
Q 026625 144 TIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHAVHPITAVQL-EWSLWAR-DI-ENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvSn---------~~~~~l~~~~~~~~~~~~q~-~~n~~~~-~~-~~~l~~~~~~~gi~v~a~ 211 (235)
..+.++.+.+-+.++.|.++. .+. .+.++++......+++ .+|--.- .. -...++.+++.|+.+..-
T Consensus 178 L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~-el~~~L~~~~~~~~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~q 256 (331)
T TIGR00238 178 LEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITD-ELCELLASFELQLMLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQ 256 (331)
T ss_pred HHHHHHHHHhcCCccEEEeecCCCccCchhcCH-HHHHHHHhcCCcEEEEccCCChHhCCHHHHHHHHHHHHcCCEEEee
Confidence 556666676666666665533 232 3333444333333332 2332211 11 145677888999999999
Q ss_pred ccCccccC
Q 026625 212 CPLGRGFF 219 (235)
Q Consensus 212 spl~~G~L 219 (235)
++|..|.-
T Consensus 257 tvLl~gvn 264 (331)
T TIGR00238 257 SVLLRGVN 264 (331)
T ss_pred cceECCcC
Confidence 99998854
No 326
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.51 E-value=63 Score=28.31 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILL 74 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~l 74 (235)
.+.++.+++++.|-+.||+.|=-=+.-| +++..+
T Consensus 83 YT~~di~eiv~yA~~rgI~VIPEID~PG--H~~a~l 116 (357)
T cd06563 83 YTQEEIREIVAYAAERGITVIPEIDMPG--HALAAL 116 (357)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEecCCch--hHHHHH
Confidence 6899999999999999999773333333 565543
No 327
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.46 E-value=3.9e+02 Score=22.50 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc-----CCCCCEEEEeccccccCC---CcccccCCCHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-----LPRENIQVATKFGFVELG---FTSVIVKGTPEYV 111 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~-----~~R~~~~I~tK~~~~~~~---~~~~~~~~~~~~i 111 (235)
.-..+.+.|+..-+.|+.++=.+++-. ++.+.+-+-|++ ...++++-|+-.....-. .+....-..
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~--~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG---- 98 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNST--RSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIG---- 98 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEEC----
Confidence 345678999999999999998887665 577767777776 234455544433221100 000000011
Q ss_pred HHHHHHHHHHcCCCccc-------EEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC
Q 026625 112 RSCCEASLRRLDVEYID-------LYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iD-------l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
+..+.+.|+.+|....+ -+.+...+.....+...+++. ...+| +++|+.-
T Consensus 99 ~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~-~i~~g-~~fI~tN 155 (269)
T COG0647 99 EEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALL-AIAAG-APFIATN 155 (269)
T ss_pred CcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHH-HHHcC-CcEEEeC
Confidence 23466788888854333 344444555555655444444 44555 8998873
No 328
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=26.45 E-value=5.2e+02 Score=23.86 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
++.++..++.+...+.|+.+|+.+..
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p 45 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFP 45 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 46788889999988999999997643
No 329
>PRK07328 histidinol-phosphatase; Provisional
Probab=26.41 E-value=3.7e+02 Score=22.22 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCeEeCCCC
Q 026625 44 GISIIKHAFSKGITFFDTADK 64 (235)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~ 64 (235)
..+++++|++.|+..+=.+++
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecC
Confidence 578899999999998755544
No 330
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.40 E-value=4.9e+02 Score=23.56 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=73.8
Q ss_pred CCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCC
Q 026625 61 TADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVD 136 (235)
Q Consensus 61 tA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~ 136 (235)
..-.|| .|+.|-++|++ .+.+-++|.|-....- .-+.+..-+++.-++.+ +.++.++.|.
T Consensus 99 ~dvVfG---g~~kL~~~I~e~~~~~~P~~I~V~ttC~~~l----------IGdDi~~v~~e~~~~~~---~~vi~v~t~g 162 (456)
T TIGR01283 99 KDVIFG---GEKKLFHAIREIVERYHPPAVFVYSTCVPGL----------IGDDLEAVCKAAAEKTG---IPVIPVDSEG 162 (456)
T ss_pred CceEeC---CHHHHHHHHHHHHHhCCCCEEEEECCChHHH----------hcCCHHHHHHHHHHHhC---CCEEEEECCC
Confidence 334677 67777788877 3455566666543221 12223333333333343 6788888886
Q ss_pred CCCC----HHHHHHHHHHHHH-------------cCCccEEEeCCC--CHHHHHHHHhcCCeeEEe-ecc----------
Q 026625 137 TSVP----IEETIGEMKKLVE-------------EGKIKYIGLSEA--SPDTIRRAHAVHPITAVQ-LEW---------- 186 (235)
Q Consensus 137 ~~~~----~~~~~~~l~~l~~-------------~G~ir~iGvSn~--~~~~l~~~~~~~~~~~~q-~~~---------- 186 (235)
.... .+.++++|-++.. .+.|.-||-.+. +.+.+.++++...+.++. +..
T Consensus 163 f~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~ 242 (456)
T TIGR01283 163 FYGSKNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTA 242 (456)
T ss_pred CccchhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhc
Confidence 5332 2334555544331 356888885543 345788888776665553 321
Q ss_pred -----Ccccc-cccchHHHHHH-HhCCeEEecccC
Q 026625 187 -----SLWAR-DIENEIVPLCR-ELGIGIVPYCPL 214 (235)
Q Consensus 187 -----n~~~~-~~~~~l~~~~~-~~gi~v~a~spl 214 (235)
|+... .....+.++.+ +.|++++..+|+
T Consensus 243 ~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~ 277 (456)
T TIGR01283 243 HRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFY 277 (456)
T ss_pred ccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCC
Confidence 22111 11123444554 559999986554
No 331
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.28 E-value=1.8e+02 Score=24.13 Aligned_cols=86 Identities=12% Similarity=0.017 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 121 (235)
....+.++.+-+.|++.++.+..+-. -++...-++++......+.+.+-++...+ ......+++...+.+++-|+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHHC
Confidence 34567777888889999988877643 35555566777666777888888885432 122223456677777777766
Q ss_pred cCCCcccEEEeccC
Q 026625 122 LDVEYIDLYYQHRV 135 (235)
Q Consensus 122 Lg~~~iDl~~lh~~ 135 (235)
| .|.+++..-
T Consensus 160 -G---A~~ViiEar 169 (244)
T PF02679_consen 160 -G---ADKVIIEAR 169 (244)
T ss_dssp -T---ECEEEE--T
T ss_pred -C---CCEEEEeee
Confidence 5 466777655
No 332
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=26.19 E-value=4.5e+02 Score=23.11 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=51.3
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHH
Q 026625 126 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRE 203 (235)
Q Consensus 126 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~ 203 (235)
.=|-+++..+.. ...+..+..+.+.-.++..-+...+.+.+++++.. .+..++..+.|+.-...+ +.+.+.|++
T Consensus 99 ~Gd~Vl~~~~~y----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~ 174 (388)
T PRK07811 99 PGDHIVIPNDAY----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHD 174 (388)
T ss_pred CCCEEEEcCCCc----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHH
Confidence 336566655432 23344444332221233333333567888877643 455556667776443333 789999999
Q ss_pred hCCeEEecccCcccc
Q 026625 204 LGIGIVPYCPLGRGF 218 (235)
Q Consensus 204 ~gi~v~a~spl~~G~ 218 (235)
+|+.++.=..++.+.
T Consensus 175 ~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 175 AGAKVVVDNTFASPY 189 (388)
T ss_pred cCCEEEEECCCCccc
Confidence 999999777666554
No 333
>PRK05939 hypothetical protein; Provisional
Probab=25.86 E-value=4.2e+02 Score=23.49 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=41.0
Q ss_pred HHHcC-CccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCcccc
Q 026625 151 LVEEG-KIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 151 l~~~G-~ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
+...| .++.+-+ .+.+.+++++.. .+..++..+.|+.-.-.+ .++.+.|+++|+-++.=..++.+.
T Consensus 106 l~~~G~~v~~v~~--~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 106 LRGLGVEVTMVDA--TDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred HHhcCCEEEEECC--CCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 33444 3444433 357778777643 445555555665443333 678999999999998777665554
No 334
>PRK07671 cystathionine beta-lyase; Provisional
Probab=25.69 E-value=4.6e+02 Score=22.99 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=34.2
Q ss_pred CCHHHHHHHHh-cCCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccc
Q 026625 165 ASPDTIRRAHA-VHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 165 ~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 217 (235)
.+.+.+++++. ..++.++..+.|+.-...+ +++.+.|+++|+.++.=..++.+
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 45677777664 2455566666666433323 67888899999888866665543
No 335
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=25.61 E-value=34 Score=23.23 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=27.1
Q ss_pred chHHHHHHHhCCeEEecccCccccCCCCCCCCCCCC
Q 026625 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPL 230 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~ 230 (235)
..+++.++++||.++-..||+.-+. .-...+.+|+
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~-~~~ig~~IP~ 64 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL-KLDLDDEIPE 64 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH-hCCCCCccCH
Confidence 6789999999999999999998775 2234455554
No 336
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.59 E-value=1.2e+02 Score=25.63 Aligned_cols=60 Identities=7% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-----CHH-HHHHHHHHHHHcCCccEEEeCCC
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-----PIE-ETIGEMKKLVEEGKIKYIGLSEA 165 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-----~~~-~~~~~l~~l~~~G~ir~iGvSn~ 165 (235)
+.+++.+++-++++.++++..-++++.+...+... .+. +-++.|+++.++|+ ..|-++.|
T Consensus 51 e~s~~e~~~i~~~~~~~~~~~~~E~~~~~~~~~~~~~~~v~i~~~g~e~l~~a~~~gk-gvIllt~H 116 (298)
T PRK07920 51 DAPAAVLDALVRAAMRSYARYWREAFRLPSMSRERLAARVRVSIEGLEHLDAALAAGR-GVVLALPH 116 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhccCCHHHHHHHHhcCC-CeEEEecC
Confidence 46788899999999999998778876665443210 110 23466777777777 45667665
No 337
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.44 E-value=4e+02 Score=22.22 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc--CCeeEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQ 183 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--~~~~~~q 183 (235)
.+.+.+.+..++. ..-|.+.||+=.= +......+.....++.+++.-.+ -|.+-+++++.++++++. ...-++-
T Consensus 22 ~d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 3455555554443 3668899998532 11122233455555555544222 378888999999999986 4333333
Q ss_pred eccCcccccccchHHHHHHHhCCeEEecc
Q 026625 184 LEWSLWARDIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 184 ~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (235)
+ |..... .+.+++.++++|+.++...
T Consensus 98 I--s~~~~~-~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 98 V--SAEGEK-LEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred C--CCCCcc-CHHHHHHHHHhCCCEEEEe
Confidence 3 222211 2578899999999888754
No 338
>PRK13561 putative diguanylate cyclase; Provisional
Probab=25.35 E-value=3.8e+02 Score=25.29 Aligned_cols=69 Identities=13% Similarity=0.250 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCH--HHHHHHHh--cCCeeEEeeccCccccc-----ccchHHHHHHHhCCeEEec
Q 026625 141 IEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHA--VHPITAVQLEWSLWARD-----IENEIVPLCRELGIGIVPY 211 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvSn~~~--~~l~~~~~--~~~~~~~q~~~n~~~~~-----~~~~l~~~~~~~gi~v~a~ 211 (235)
.+.+.+.+++|++.|- .+++.+|.. ..+..+.. ..+++++-+.-+++..- .-..++..|+..|+.|+|-
T Consensus 533 ~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 533 PHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4567888999999998 677766642 23333332 24566666654443321 1156788999999998864
No 339
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=25.33 E-value=4.1e+02 Score=23.29 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=57.7
Q ss_pred CcccEE-EeccCCCC-----------CCHHHHHHHHHHHHH-cCC---ccEEEeC--CCCHHHHHHHHhc---C-----C
Q 026625 125 EYIDLY-YQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLS--EASPDTIRRAHAV---H-----P 178 (235)
Q Consensus 125 ~~iDl~-~lh~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS--n~~~~~l~~~~~~---~-----~ 178 (235)
.++|+. .+|.+++. ..++++++++.+..+ .|. |+++=+. |.+.++++++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 357774 57877442 245677777766655 343 4444333 4455566655543 2 3
Q ss_pred eeEEeeccCccccc------cc----chHHHHHHHhCCeEEecccCccc
Q 026625 179 ITAVQLEWSLWARD------IE----NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 179 ~~~~q~~~n~~~~~------~~----~~l~~~~~~~gi~v~a~spl~~G 217 (235)
..++-++||.+... +. ..+.+..+++|+.+......+.-
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 56888899986432 11 45677888999999988887543
No 340
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=25.31 E-value=2.4e+02 Score=23.34 Aligned_cols=45 Identities=27% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (235)
.+...+.+.+.|+.||++ .|- .+-....++...+++++|.++|++
T Consensus 51 ~~~~~~~i~~dL~wLGl~-~d~----~~~qS~r~~~y~~~~~~Li~~G~a 95 (240)
T cd09287 51 DPEAYDMIPEDLEWLGVK-WDE----VVIASDRIELYYEYARKLIEMGGA 95 (240)
T ss_pred hHHHHHHHHHHHHHcCCC-CCC----ccchhccHHHHHHHHHHHHHcCCc
Confidence 445566788999999994 462 222345677889999999999984
No 341
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=25.15 E-value=1.1e+02 Score=26.21 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (235)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 456778889999999996 5754332 1112345678999999999998
No 342
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=25.14 E-value=2.3e+02 Score=25.91 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=67.1
Q ss_pred CcHHHHHHHHHhc---CCCCCEEEEeccccccCCCc---------ccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccC
Q 026625 68 YTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV 135 (235)
Q Consensus 68 g~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~---------~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~ 135 (235)
|.-|.++.-+-+. --+-.+++++-++......+ ....+.+.+.|. .||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~-------~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRID-------KRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHH-------HHHhcchhhhh-----
Confidence 4556665544333 23567888888876543211 012233344443 46668888852
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEE
Q 026625 136 DTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAV 182 (235)
Q Consensus 136 ~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~ 182 (235)
...++++++..++..++|+-.+||+-..-.+.+.++++. ..|+++
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 346889999999999999999999998888889988876 344443
No 343
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=25.06 E-value=4.7e+02 Score=22.94 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=69.5
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCC--C-----------------CCCCCcHH---HHHHHHH---hc-CCCCC
Q 026625 39 LSEEDGISIIK-------HAFSKGITFFDTA--D-----------------KYGPYTNE---ILLGKAL---KE-LPREN 85 (235)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA--~-----------------~Yg~g~sE---~~lG~al---~~-~~R~~ 85 (235)
.+.+++.++++ .|.++|+.-+..- + .|| |.-| +++-+.+ ++ .. ++
T Consensus 149 mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYG-GslENR~Rf~~Eiv~aVr~~vg-~~ 226 (362)
T PRK10605 149 LELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYG-GSVENRARLVLEVVDAGIAEWG-AD 226 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCC-CcHHHHHHHHHHHHHHHHHHcC-CC
Confidence 56666666555 4667999877653 2 233 3334 2222333 32 33 33
Q ss_pred EEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC
Q 026625 86 IQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (235)
Q Consensus 86 ~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~ 165 (235)
+|..|+......+ ......+.+.....+-.-|+..|+|+|++-.-++... .... ...-+++++.=.+--+++..+
T Consensus 227 -~igvRis~~~~~~-~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~~~--~~~~~~ik~~~~~pv~~~G~~ 301 (362)
T PRK10605 227 -RIGIRISPLGTFN-NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EPYS--DAFREKVRARFHGVIIGAGAY 301 (362)
T ss_pred -eEEEEECCccccc-cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC-cccc--HHHHHHHHHHCCCCEEEeCCC
Confidence 4888987542100 0011234444223344566777888877643221111 1111 111123333212334455557
Q ss_pred CHHHHHHHHhcCCeeEEee
Q 026625 166 SPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 166 ~~~~l~~~~~~~~~~~~q~ 184 (235)
+++..+++++....+.+-+
T Consensus 302 ~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 302 TAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CHHHHHHHHHcCCCCEEEE
Confidence 8999999998876666655
No 344
>PRK07503 methionine gamma-lyase; Provisional
Probab=24.90 E-value=4.6e+02 Score=23.21 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=36.6
Q ss_pred CCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCcccc
Q 026625 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
.+++.+++++.. .+..++..+.|+.-...+ +.+.+.|+++|+.++.=.+++.+.
T Consensus 138 ~d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~ 193 (403)
T PRK07503 138 TDPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPY 193 (403)
T ss_pred CCHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 367778777643 445555455665544333 789999999999999777776554
No 345
>PRK05406 LamB/YcsF family protein; Provisional
Probab=24.83 E-value=2.8e+02 Score=23.08 Aligned_cols=81 Identities=15% Similarity=0.313 Sum_probs=52.1
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccC-CCccc
Q 026625 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL-GFTSV 102 (235)
Q Consensus 25 g~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~-~~~~~ 102 (235)
+||.|.+| ++++.-..|..|. ..| .+.| ....+-+.++--....+.|...-++.+. ..|..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG-------~HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACG-------FHAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhcc-------ccCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 67887765 4577778887775 333 3556 3445555555444567777777665542 23455
Q ss_pred ccCCCHHHHHHHHHHHHHHc
Q 026625 103 IVKGTPEYVRSCCEASLRRL 122 (235)
Q Consensus 103 ~~~~~~~~i~~~~~~sL~~L 122 (235)
....+++.+...+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 66778888888877776666
No 346
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=24.59 E-value=1.1e+02 Score=26.31 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 121 (235)
+.-+++|+...+.|+ .+|.|+. +|+.+=++++- -+..+|+|......-. ....+.+.+ +++..-++
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~--~h~RNltDe----~iraia~~ 225 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALC--PHPRNLTDE----QIRAIAER 225 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS----TTSB-HH----HHHHHHHT
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhC--CCCCCCCHH----HHHHHHHC
Confidence 567899999999997 8999974 89999999983 3457777776544321 112223322 23333333
Q ss_pred cCCCcccEEEecc---C--CCCCCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 122 LDVEYIDLYYQHR---V--DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 122 Lg~~~iDl~~lh~---~--~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
=|+ |=+.+... + +....++++.+.++.+++.+=+.+||+.+
T Consensus 226 GGv--iGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 226 GGV--IGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp T-E--EEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred CcE--EEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 332 33333321 1 23456889999999999887799999964
No 347
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.56 E-value=2.4e+02 Score=20.31 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhc-CCeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
.+.+.+..+... .+++++-+-..--.+....++.++++++||++..+..
T Consensus 40 l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 40 ITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 345555555543 2455555544333333346788888888888877654
No 348
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.53 E-value=2.4e+02 Score=26.11 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc--------CCeeEEeeccCcccccccchHHHHHHHhCCeEEe
Q 026625 139 VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--------HPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~--------~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
.+..+.-+....|+++|.+-+|.--|-. ....+.... ..+++.|++|+.- ...+...|++.+++.=+
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~-~da~evF~khp~MiLkeedfa~~~iNW~~K----~eNirkIAkklNlg~dS 329 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTE-KDAKEVFRKHPDMILKEEDFAVFQINWDPK----AENIRKIAKKLNLGLDS 329 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCch-hhHHHHHhhCCCeEeeHhhhhhheecCCcc----hhhHHHHHHHhCCCccc
Confidence 3445566667778899998877655543 334444433 3477788877632 25789999999887544
No 349
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=24.51 E-value=4.6e+02 Score=22.96 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=33.8
Q ss_pred CHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccc
Q 026625 166 SPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 166 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 217 (235)
+.+.+++++.. .+..++..+.|+.-...+ +++.+.|+++|+.++.=..++.+
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~ 181 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATP 181 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 56777766532 445565666665443333 78899999999999966555443
No 350
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=24.44 E-value=2.5e+02 Score=20.88 Aligned_cols=54 Identities=26% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
.+.+.+...+++..+. .-+.-.+=..|...+...+.+.|..+++.| +..+++..
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 3455555555544332 123323333566778899999999999999 55688765
No 351
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=24.38 E-value=1.8e+02 Score=21.39 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=31.9
Q ss_pred CHHHHHHHHhc-CCeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 166 SPDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 166 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
+++.+++.++. ..+.++-+--..-.+.....+.+.|++.||++-.+|.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMST 104 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccc
Confidence 35666666655 3355555555444454457899999999999887764
No 352
>PRK15108 biotin synthase; Provisional
Probab=24.37 E-value=4.8e+02 Score=22.72 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHH--HHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNE--ILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE--~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 116 (235)
.+.+++.+..+.+.+.|++.|-.....-..... +.+-+.++.++...+.++.-.+... .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls-----------~e~l~~--- 141 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLS-----------ESQAQR--- 141 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCC-----------HHHHHH---
Q ss_pred HHHHHcCCCcccEEEeccC------CCCCCHHHHHHHHHHHHHcCCccE----EEeCCCCHHHHHHHHhcCCe--eEEee
Q 026625 117 ASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAVHPI--TAVQL 184 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~~~~~~~--~~~q~ 184 (235)
|+..|+|++.+-+=-.| -....+++.++.++.+++.|.--. +|+.....+.++-+.....+ .+..+
T Consensus 142 --LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~i 219 (345)
T PRK15108 142 --LANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESV 219 (345)
T ss_pred --HHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEE
Q ss_pred ccCcccc
Q 026625 185 EWSLWAR 191 (235)
Q Consensus 185 ~~n~~~~ 191 (235)
++|.+.+
T Consensus 220 p~~~~~P 226 (345)
T PRK15108 220 PINMLVK 226 (345)
T ss_pred EeCCccC
No 353
>PLN02509 cystathionine beta-lyase
Probab=24.34 E-value=5.1e+02 Score=23.69 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=42.2
Q ss_pred ccEEEeCCCCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccC
Q 026625 157 IKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 157 ir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
++.+. ..+.+.+++++.. .+..++..+.|+.-...+ +.+.+.|+++|+.++.=..++.|.+
T Consensus 199 v~~vd--~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 199 VKRVN--TTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred EEEeC--CCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 34443 3456777777643 455666677777555433 7889999999999998888877765
No 354
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=24.33 E-value=3.7e+02 Score=22.45 Aligned_cols=87 Identities=15% Similarity=0.282 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCC----------CCCHHHHHHHHHHHHHcCCccEEEeC----CCCHHHHHHHH
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKYIGLS----EASPDTIRRAH 174 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~----------~~~~~~~~~~l~~l~~~G~ir~iGvS----n~~~~~l~~~~ 174 (235)
-.+...+.+..++||+.| ++=.+.|- ...+++-++.|++++++ +|+- -|..+|.....
T Consensus 34 ~~~a~~lk~~t~~lgi~~---vfKsSfDKANRsSi~s~RGpGLeeglki~~~vK~e-----fgv~ilTDVHe~~q~~~vA 105 (279)
T COG2877 34 LEIAEHLKELTEKLGIPY---VFKSSFDKANRSSIHSYRGPGLEEGLKILQEVKEE-----FGVPILTDVHEPSQAQPVA 105 (279)
T ss_pred HHHHHHHHHHHhccCCce---EEecccccccccccccccCCCHHHHHHHHHHHHHH-----cCCceeeccCChhhcchHH
Confidence 345567777888888754 44433322 13478899999999987 4442 35566665555
Q ss_pred hcCCeeEEeeccCcccccccchHHHHHHHhCCeE
Q 026625 175 AVHPITAVQLEWSLWARDIENEIVPLCRELGIGI 208 (235)
Q Consensus 175 ~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v 208 (235)
+. .+++|++--+..+ .+++..+.+-|-.|
T Consensus 106 ~V--vDilQiPAFLcRQ---TDLl~A~AkTg~~v 134 (279)
T COG2877 106 EV--VDVLQIPAFLCRQ---TDLLVAAAKTGAVV 134 (279)
T ss_pred hh--hhhhcchHHHhhh---HHHHHHHHHhCCeE
Confidence 43 4678888665554 57888887777544
No 355
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=24.32 E-value=4.6e+02 Score=22.50 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC---CcHH----HHHHHHHhc-----------CCCCCEEEEeccccccCCCcc
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGP---YTNE----ILLGKALKE-----------LPRENIQVATKFGFVELGFTS 101 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~---g~sE----~~lG~al~~-----------~~R~~~~I~tK~~~~~~~~~~ 101 (235)
.++..+++-..++++|-+.++|+. |.. |-+| +.+.+.++. ...+...|..=+++....-.+
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 356677777888899999999984 543 1222 222222222 223334455555543322111
Q ss_pred ---cccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCH------HHHHH
Q 026625 102 ---VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP------DTIRR 172 (235)
Q Consensus 102 ---~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~------~~l~~ 172 (235)
.....+.+.+.+-.+.-++.|.-.-+|++.+...+.-...+.+.++.+++ ++=-.|+++-.+. .-+.+
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~e 196 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSE 196 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHH
Confidence 12234566666667777788877779999998765543344555666555 7877888876521 22333
Q ss_pred HH---hc-CCeeEEeeccCcccccccchHHHHH--HHhCCeEEeccc
Q 026625 173 AH---AV-HPITAVQLEWSLWARDIENEIVPLC--RELGIGIVPYCP 213 (235)
Q Consensus 173 ~~---~~-~~~~~~q~~~n~~~~~~~~~l~~~~--~~~gi~v~a~sp 213 (235)
+. .- ..+..+-++|.-.+. -..+++.+ ...++++++|--
T Consensus 197 aa~~~~~~~~iaa~gvNC~~p~~--~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 197 AAAILAGLPNIAALGVNCCHPDH--IPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHHhcCcchhheeeccCChhh--hHHHHHHHHhcCCCCceEEcCC
Confidence 33 22 245566666554443 25677777 444889999876
No 356
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=24.19 E-value=3.7e+02 Score=21.46 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHH
Q 026625 32 SGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (235)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i 111 (235)
|+.+ ..++++-.+++..+++.|+.++|.--... .+...-.......+..+++|..-....+. .+.+
T Consensus 67 GG~~--~~~~~~~~~ll~~~~~~~~d~iDiE~~~~---~~~~~~~~~~~~~~~~iI~S~H~f~~tp~---------~~~l 132 (224)
T PF01487_consen 67 GGRF--QGSEEEYLELLERAIRLGPDYIDIELDLF---PDDLKSRLAARKGGTKIILSYHDFEKTPS---------WEEL 132 (224)
T ss_dssp TSSB--SS-HHHHHHHHHHHHHHTSSEEEEEGGCC---HHHHHHHHHHHHTTSEEEEEEEESS---T---------HHHH
T ss_pred CCCC--cCCHHHHHHHHHHHHHcCCCEEEEEcccc---hhHHHHHHHHhhCCCeEEEEeccCCCCCC---------HHHH
Q ss_pred HHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC
Q 026625 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 112 ~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
.+.+++.. .+|.|.+-+...- ....+....++...++.+.-...-|+++
T Consensus 133 ~~~~~~~~-~~gadivKia~~~--~~~~D~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 133 IELLEEMQ-ELGADIVKIAVMA--NSPEDVLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp HHHHHHHH-HTT-SEEEEEEE---SSHHHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred HHHHHHHH-hcCCCeEEEEecc--CCHHHHHHHHHHHHHHhhccCCcEEEEE
No 357
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=24.19 E-value=4.4e+02 Score=22.29 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHc---CCCcccEEEeccCC--CCCCHH----HHHHHHHHHHHcCCccE-EEe---CCCCHHHHHH
Q 026625 106 GTPEYVRSCCEASLRRL---DVEYIDLYYQHRVD--TSVPIE----ETIGEMKKLVEEGKIKY-IGL---SEASPDTIRR 172 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~L---g~~~iDl~~lh~~~--~~~~~~----~~~~~l~~l~~~G~ir~-iGv---Sn~~~~~l~~ 172 (235)
.+++.+.......++.+ |+.|+|+..--... .....+ .+.+++.+.+++--|+. +.+ .+.+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 35677777777666555 88899976332111 112233 34667777666533332 222 2334444444
Q ss_pred HHh----cCCeeEEeeccCcc--cc--cccchHHHHHHHhCCeEEecc
Q 026625 173 AHA----VHPITAVQLEWSLW--AR--DIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 173 ~~~----~~~~~~~q~~~n~~--~~--~~~~~l~~~~~~~gi~v~a~s 212 (235)
.++ ...-.++-+....- .. ..-..+++.|+++|+.+....
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~ 193 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHA 193 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeC
Confidence 433 11111333332211 11 112678899999998887764
No 358
>PLN02666 5-oxoprolinase
Probab=24.19 E-value=8.6e+02 Score=25.64 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCC--CCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcc---ccc-CC---CH
Q 026625 38 PLSEEDGISIIKHAFSKGITFFDTA--DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTS---VIV-KG---TP 108 (235)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~---~~~-~~---~~ 108 (235)
+.++++.+++++...+.|+..+=.+ ..|-+...|+.+.+.+++...-.+.+++.+++....... ... .+ .-
T Consensus 172 plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~eR~~TavlnAyl~p~~ 251 (1275)
T PLN02666 172 PLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTASVDAYLTPVI 251 (1275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhccccchHHHHHHHHHHHHHH
Confidence 5689999999999999999976555 445556789999999987443457777887763311000 000 00 01
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCC
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP 140 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~ 140 (235)
......+++.|+..+.. -+++++++-.-..+
T Consensus 252 ~~yl~~l~~~l~~~g~~-~~l~im~sdGG~~~ 282 (1275)
T PLN02666 252 KEYLSGFLSGFDDGLGD-VNVLFMQSDGGLTP 282 (1275)
T ss_pred HHHHHHHHHHHHhcCCC-CCEEEEecCCCcCC
Confidence 23344566666655544 47888887754333
No 359
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=24.16 E-value=3e+02 Score=20.85 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=22.4
Q ss_pred CEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCC
Q 026625 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV 124 (235)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 124 (235)
+++|..|-+... .+.+.+.+++...|+++++
T Consensus 87 DiVviar~~~~~---------~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 87 DYVVVARSAAAK---------ASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CEEEEEeCCccc---------CCHHHHHHHHHHHHHHhCc
Confidence 667667655432 4678888899999888775
No 360
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=24.06 E-value=4.5e+02 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCeEeCCCCC
Q 026625 46 SIIKHAFSKGITFFDTADKY 65 (235)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y 65 (235)
.-+..=++.|||+||--..|
T Consensus 34 ~~i~~QL~~GiRyfDlRv~~ 53 (281)
T cd08620 34 DNVSTQLALGARYFDFRPGY 53 (281)
T ss_pred ccHHHHHhcCcEEEEEEeee
Confidence 34556678999999885444
No 361
>PRK10997 yieM hypothetical protein; Provisional
Probab=24.05 E-value=2.9e+02 Score=25.53 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCC---CcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC--CCCHHHHHHH
Q 026625 110 YVRSCCEASLRRLDV---EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPDTIRRA 173 (235)
Q Consensus 110 ~i~~~~~~sL~~Lg~---~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS--n~~~~~l~~~ 173 (235)
.+..+++..++.++. ..-|++++-........++..+.+..|++++..|..||+ ++....+.++
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~i 466 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRI 466 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHh
Confidence 366677777777763 247888888664433356889999999998887877774 4444444444
No 362
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=23.80 E-value=78 Score=24.04 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=27.2
Q ss_pred ecCCCCcccCcceeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeE
Q 026625 13 KLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFF 59 (235)
Q Consensus 13 ~lg~~g~~vs~lg~G~~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~ 59 (235)
.-|++.+.-+-+.+- .+|...| ++++++.++++.|++.|+=-.
T Consensus 12 ~kg~~~L~~sefv~~-Ls~D~~W---mspdqAk~li~~A~~eGLl~~ 54 (144)
T PF09999_consen 12 QKGKDRLSKSEFVFA-LSFDRKW---MSPDQAKRLIDEAIEEGLLEE 54 (144)
T ss_pred HcCccccChhheEee-EeeecCC---CCHHHHHHHHHHHHHCCCeee
Confidence 334455555544432 2333345 578999999999999997433
No 363
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=23.72 E-value=1.5e+02 Score=24.91 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCC-----CHHHHHHHHHHHHHcCCccEEEeCCC
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-----PIEETIGEMKKLVEEGKIKYIGLSEA 165 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~-----~~~~~~~~l~~l~~~G~ir~iGvSn~ 165 (235)
.+.+.+++-+++++++++..-+|.+.+...+... .+ +-.+.++++.++|+ ..|-+++|
T Consensus 59 ~s~~e~~~l~~~~~~~~~~~~~E~~~~~~~~~~~~~~~v~i-~g~e~l~~a~~~g~-gvI~~t~H 121 (298)
T PRK08419 59 KSQEEKKRIIKKCYENFAFFGLDFIRNQNTTKEEILNKVTF-INEENLLDALKKKR-PIIVTTAH 121 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhhcCcEEE-ECHHHHHHHHHcCC-CEEEEeeC
Confidence 5678888889999999997777877765432211 11 23466777777776 55667766
No 364
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=23.72 E-value=2.6e+02 Score=23.09 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (235)
......+++.+.|+.||+++ |-.+ -.....+...+++++|+++|++
T Consensus 48 ~~~~~~~~I~~dL~wlGl~w-D~~~----~QS~r~~~Y~~~~~~L~~~g~a 93 (238)
T cd00807 48 EEEEYVDSIKEDVKWLGIKP-YKVT----YASDYFDQLYEYAEQLIKKGKA 93 (238)
T ss_pred cchHHHHHHHHHHHHcCCCC-CCce----ecccCHHHHHHHHHHHHHcCCe
Confidence 45567788899999999864 3111 1234567788999999999975
No 365
>PHA02128 hypothetical protein
Probab=23.69 E-value=2.8e+02 Score=19.87 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-----------------CC-eeEE---eeccCcccccccchHHHH
Q 026625 142 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-----------------HP-ITAV---QLEWSLWARDIENEIVPL 200 (235)
Q Consensus 142 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-----------------~~-~~~~---q~~~n~~~~~~~~~l~~~ 200 (235)
...+....++..+|-+|-|-+...+...+..+... .| +.+. ..+|.+..+...+++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 35677778899999999998877665555554321 11 2223 335777777666899999
Q ss_pred HHHhCCeEEec
Q 026625 201 CRELGIGIVPY 211 (235)
Q Consensus 201 ~~~~gi~v~a~ 211 (235)
+--+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988754
No 366
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=23.65 E-value=4.7e+02 Score=22.44 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHH-------
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV------- 111 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i------- 111 (235)
.+.++..+.++.+.+.|++.|-......+......+-+.++.+.+...-+.-+. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~~ 138 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKKE 138 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhccC
Confidence 578899999999999999877664322211122223333333211111111110 111111
Q ss_pred ---HHHHHHHHHHcCCCcccEE--E-e-----ccC-CCCCCHHHHHHHHHHHHHcCCccE----EEeCCCCHHHHHHH
Q 026625 112 ---RSCCEASLRRLDVEYIDLY--Y-Q-----HRV-DTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRA 173 (235)
Q Consensus 112 ---~~~~~~sL~~Lg~~~iDl~--~-l-----h~~-~~~~~~~~~~~~l~~l~~~G~ir~----iGvSn~~~~~l~~~ 173 (235)
.+..-+.|+..|+++++.. - + +.. ......++.+++++.+++.|.--. +|+ ..+.+++.+.
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~~ 215 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIEH 215 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHHH
Confidence 1333356667788776521 0 0 110 112356778999999999985333 243 4555554443
No 367
>PLN02389 biotin synthase
Probab=23.59 E-value=5.2e+02 Score=22.91 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCC-CCCc---HHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKY-GPYT---NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~g~---sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (235)
.+.+++.+.++.+.+.|++.|-....+ +.+. .-..+-+.++.+....+.|....+. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHHHH---
Confidence 588999999999999999987532111 1111 1234555666544334555543332 123322
Q ss_pred HHHHHHHcCCCcccEEEecc-C------CCCCCHHHHHHHHHHHHHcCC
Q 026625 115 CEASLRRLDVEYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 156 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 156 (235)
+.|+.-|++++-.-+ .. + -....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 334455766543321 21 1 012357788999999999985
No 368
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=23.41 E-value=3.2e+02 Score=21.58 Aligned_cols=35 Identities=6% Similarity=-0.005 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc
Q 026625 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 176 (235)
..++.+.|+.|++.|.--+| +||.....++..++.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 45788888999999865555 777776666666554
No 369
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.41 E-value=4.2e+02 Score=21.79 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHH-HHHHHHHhcCCCCCEEEEeccccccC----CCc-c---c-------
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNE-ILLGKALKELPRENIQVATKFGFVEL----GFT-S---V------- 102 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE-~~lG~al~~~~R~~~~I~tK~~~~~~----~~~-~---~------- 102 (235)
++.++..++++.-.+.|+..+++.... .+..+ +.+.+..+..++-.+..........- ..+ . .
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~ 95 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDI 95 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHH
Confidence 467888999999999999999997332 12344 34443333122211111111000000 000 0 0
Q ss_pred ----ccCCCHHHHHHHHHHHHH---HcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCC----CCHHHH
Q 026625 103 ----IVKGTPEYVRSCCEASLR---RLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSE----ASPDTI 170 (235)
Q Consensus 103 ----~~~~~~~~i~~~~~~sL~---~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn----~~~~~l 170 (235)
..+.+++...+.+...++ ..|. ++ .+..++.. .+.+.+.+..+++.+.| +..|.++. ..|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v---~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v 170 (259)
T cd07939 96 HLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FV---SVGAEDASRADPDFLIEFAEVAQEAG-ADRLRFADTVGILDPFTT 170 (259)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eE---EEeeccCCCCCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCHHHH
Confidence 001122333333333332 2343 12 23333332 34566666666777766 46677665 346666
Q ss_pred HHHHhcC--CeeEEeeccCccccccc--chHHHHHHHhCCeEEecccCccccCCCC
Q 026625 171 RRAHAVH--PITAVQLEWSLWARDIE--NEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (235)
Q Consensus 171 ~~~~~~~--~~~~~q~~~n~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~ 222 (235)
.+++... .+. +++.++.-+..-. ...+. |-+.|+..+--|-.+-|--+|.
T Consensus 171 ~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~la-Ai~aG~~~vd~s~~G~G~~aGN 224 (259)
T cd07939 171 YELIRRLRAATD-LPLEFHAHNDLGLATANTLA-AVRAGATHVSVTVNGLGERAGN 224 (259)
T ss_pred HHHHHHHHHhcC-CeEEEEecCCCChHHHHHHH-HHHhCCCEEEEecccccccccC
Confidence 5554431 111 3444443333111 12233 3468888887777777765555
No 370
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=23.22 E-value=4.3e+02 Score=21.78 Aligned_cols=54 Identities=15% Similarity=0.370 Sum_probs=38.0
Q ss_pred CHHHHHHHHhcCCeeEEee----ccCccccccc---chHHHHHHHhCCeEEecccCccccC
Q 026625 166 SPDTIRRAHAVHPITAVQL----EWSLWARDIE---NEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 166 ~~~~l~~~~~~~~~~~~q~----~~n~~~~~~~---~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
+++++..+.+...+.++.+ +||.++.... .+++++++.-|-.-+...|+..|--
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~ 110 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSW 110 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCC
Confidence 4567777776666555554 3666664322 6789999999999999999986543
No 371
>PRK06361 hypothetical protein; Provisional
Probab=23.19 E-value=3.8e+02 Score=21.13 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCCeEeCCCCCCCCcHHHH---HHHHHhcC-CCCCEEE--EeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 44 GISIIKHAFSKGITFFDTADKYGPYTNEIL---LGKALKEL-PRENIQV--ATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~---lG~al~~~-~R~~~~I--~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
..++++.|.+.|+..|=.+++.....-... +-+..++. ...++.| ..-+... .+..+. .+..
T Consensus 12 ~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~-----------~~~~~~-~~~~ 79 (212)
T PRK06361 12 PSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHV-----------PPKLIP-KLAK 79 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEccc-----------Cchhhc-hHHH
Confidence 578999999999998877766531111111 11111111 1113322 2222211 122222 2334
Q ss_pred HHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCC-CHHHHHHHHhcCCeeEEeeccCcccccccch
Q 026625 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEWSLWARDIENE 196 (235)
Q Consensus 118 sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 196 (235)
.+.+++ .|+..+|......+.. ...-.++.+.|.+.-+|=-.. ..+.++.+.+. .+ ++.++.+.........
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~-~~-~lEin~~~~~~~~~~~ 152 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAEN-GV-FLEITARKGHSLTNGH 152 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHc-Ce-EEEEECCCCcccchHH
Confidence 555554 5677899543222211 111145667787766654332 22333333332 22 2222221112223468
Q ss_pred HHHHHHHhCCeEEecccCc
Q 026625 197 IVPLCRELGIGIVPYCPLG 215 (235)
Q Consensus 197 l~~~~~~~gi~v~a~spl~ 215 (235)
+++.+++.|+.++.-|...
T Consensus 153 ~l~~a~~~gi~vv~~SDaH 171 (212)
T PRK06361 153 VARIAREAGAPLVINTDTH 171 (212)
T ss_pred HHHHHHHhCCcEEEECCCC
Confidence 9999999999988766544
No 372
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=23.02 E-value=5.5e+02 Score=22.97 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=63.0
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHH-cCCccEEEeC---CCCHH
Q 026625 109 EYVRSCCEASL-----------RRLDVEYIDLYYQHRVDTS-----VPIEETIGEMKKLVE-EGKIKYIGLS---EASPD 168 (235)
Q Consensus 109 ~~i~~~~~~sL-----------~~Lg~~~iDl~~lh~~~~~-----~~~~~~~~~l~~l~~-~G~ir~iGvS---n~~~~ 168 (235)
+.+.+.++... +.++ +|++-||.-..+ .+.++..+..++..+ .+.=--|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55555555544 5565 688888876443 234456666666533 3333344434 56788
Q ss_pred HHHHHHhcC---CeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccC
Q 026625 169 TIRRAHAVH---PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 169 ~l~~~~~~~---~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
.++++++.. ++-++-. |.=+ .-..+.+.|+++|..+++++|..-|.+
T Consensus 205 VLeaaLe~~~G~kpLL~SA--t~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASA--NLDL--DYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHhCCCCcEEEec--Cchh--hHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 888888762 2322222 2210 126899999999999999998865543
No 373
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.97 E-value=5.8e+02 Score=23.19 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=70.5
Q ss_pred CCCCCCcHHHHHHHHHhc----CCC-CCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC
Q 026625 63 DKYGPYTNEILLGKALKE----LPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT 137 (235)
Q Consensus 63 ~~Yg~g~sE~~lG~al~~----~~R-~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~ 137 (235)
-.|| .|+.|-++|++ .++ +-++|.+-....- .-+.+..-+++.-++.+ .+.++.+|.|..
T Consensus 104 iVfG---ge~kL~~aI~e~~~~~p~p~~I~V~stC~~~l----------IGDDi~~v~~e~~~~~~--~~pvv~v~t~gf 168 (457)
T TIGR01284 104 VVFG---GEKKLKRCILEAFREFPEIKRMYTYATCTTAL----------IGDDIDAIAREVMEEIP--DVDVFAINAPGF 168 (457)
T ss_pred eEec---HHHHHHHHHHHHHHhCCCCceEEEECCChHHh----------hccCHHHHHHHHHHhcC--CCeEEEeeCCCc
Confidence 3566 68888888877 332 3366666543221 12223333333333332 267999998875
Q ss_pred CCC-----HHHHHHH-HHHHH--------HcCCccEEEeCCCC--HHHHHHHHhcCCeeEE-eec---------------
Q 026625 138 SVP-----IEETIGE-MKKLV--------EEGKIKYIGLSEAS--PDTIRRAHAVHPITAV-QLE--------------- 185 (235)
Q Consensus 138 ~~~-----~~~~~~~-l~~l~--------~~G~ir~iGvSn~~--~~~l~~~~~~~~~~~~-q~~--------------- 185 (235)
... ...+.++ +++++ ..+.|.-||-.|+. .+.+.++++...+.++ .+.
T Consensus 169 ~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~ 248 (457)
T TIGR01284 169 AGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAK 248 (457)
T ss_pred CCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccC
Confidence 431 2223333 23333 23578888865543 3556677766555544 221
Q ss_pred cCcccc-cccchHHHHHH-HhCCeEEecccC
Q 026625 186 WSLWAR-DIENEIVPLCR-ELGIGIVPYCPL 214 (235)
Q Consensus 186 ~n~~~~-~~~~~l~~~~~-~~gi~v~a~spl 214 (235)
+|+... .....+.++.+ +.||+++..+|+
T Consensus 249 lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~ 279 (457)
T TIGR01284 249 LNVVRCARSANYIANELEERYGIPRLDIDFF 279 (457)
T ss_pred EEEEEChHHHHHHHHHHHHHhCCCeEecccC
Confidence 223211 11123445555 449999977653
No 374
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=22.94 E-value=3.7e+02 Score=20.97 Aligned_cols=104 Identities=11% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCeEeCCCCCCCCcHHHHHHHHHhcC--CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCccc-----
Q 026625 56 ITFFDTADKYGPYTNEILLGKALKEL--PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYID----- 128 (235)
Q Consensus 56 i~~~DtA~~Yg~g~sE~~lG~al~~~--~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iD----- 128 (235)
.-++-.-+..+. ..-+++-..++.. ...+++|+-|--. -..-++++-...+.+..+|++
T Consensus 26 wgHvQnDnI~~k-~~~~f~~~~l~~L~~~~~~vViaDRNNh-------------~~reR~ql~~~~~~~~~~yl~~~~~~ 91 (168)
T PF08303_consen 26 WGHVQNDNITGK-RKPKFIKAVLELLAKDTHPVVIADRNNH-------------QKRERKQLFEDVSQLKPDYLPYDTNV 91 (168)
T ss_pred CCccccCCCCCC-CHHHHHHHHHHHHhhCCCCEEEEeCCCc-------------hHHHHHHHHHHHHHhcccccccCCCe
Confidence 556655555554 4566666667665 6678888887432 233466666677777776664
Q ss_pred -EEEeccCCCCCCHHHHHHHHH-HHHHcC-CccEEEeCCCCHHHHHHHH
Q 026625 129 -LYYQHRVDTSVPIEETIGEMK-KLVEEG-KIKYIGLSEASPDTIRRAH 174 (235)
Q Consensus 129 -l~~lh~~~~~~~~~~~~~~l~-~l~~~G-~ir~iGvSn~~~~~l~~~~ 174 (235)
++-|||..+. +.+++|+... +..+.| -=..|=.+......++.++
T Consensus 92 r~VaL~fv~~~-~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im 139 (168)
T PF08303_consen 92 RFVALNFVHDD-DLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIM 139 (168)
T ss_pred EEEEEEccCCC-CHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHH
Confidence 6777877665 6777777554 455666 2233444554545444444
No 375
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=22.92 E-value=97 Score=22.54 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHH
Q 026625 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 173 (235)
-...-||.+ -..-+-.|.... .-+...+++++|| +++|+|..+.++...+
T Consensus 62 mAIallG~~--~C~Tvs~pg~~~----~eeeI~~~v~~GK-~AFGft~~hie~vvP~ 111 (117)
T PF10941_consen 62 MAIALLGYG--KCATVSMPGKIP----SEEEIRKEVAEGK-KAFGFTAQHIEQVVPV 111 (117)
T ss_pred HHHHHhCcc--ceeEeecCCCCC----CHHHHHHHHHcCC-eeeeccHHHHHHHHHH
Confidence 344456643 334444453322 2355677899999 7899988776665443
No 376
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=22.87 E-value=5.2e+02 Score=22.62 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCCCCCCCCcHHHHHHHHHhcCC-CCCEEEEeccccccCCCcccccCCCHHHHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKG-ITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~g~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 116 (235)
.+.+++.+.-+.|-+.| .++...|..++.|..=..+-++++.+. --.+-+..-+|- .+.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq~----- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQA----- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHHH-----
Confidence 46777888888888999 889999988873343344455555422 112333333331 233333
Q ss_pred HHHHHcCCCcccEEEeccCCC----------CCCHHHHHHHHHHHHHcCCccEE----EeCCCCHHHHHHHHhcCCee-E
Q 026625 117 ASLRRLDVEYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKYI----GLSEASPDTIRRAHAVHPIT-A 181 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~lh~~~~----------~~~~~~~~~~l~~l~~~G~ir~i----GvSn~~~~~l~~~~~~~~~~-~ 181 (235)
.-|+.-|+++ +-|+.+. ...+++-++.++..++.|.=-.. |+..-..+.++-+.....+. .
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 2455667663 4565543 23578899999999999874433 44444444444443332211 4
Q ss_pred EeeccCcccc
Q 026625 182 VQLEWSLWAR 191 (235)
Q Consensus 182 ~q~~~n~~~~ 191 (235)
-.++.|.+++
T Consensus 224 dsVPIn~l~P 233 (335)
T COG0502 224 DSVPINFLNP 233 (335)
T ss_pred CeeeeeeecC
Confidence 5556666654
No 377
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.84 E-value=5.4e+02 Score=22.77 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=56.3
Q ss_pred EEeccCCC------------CCCHHHHHHHHHHH-HHcC---CccEEEeC--CCCHHHHHHHH---hcCCeeEEeeccCc
Q 026625 130 YYQHRVDT------------SVPIEETIGEMKKL-VEEG---KIKYIGLS--EASPDTIRRAH---AVHPITAVQLEWSL 188 (235)
Q Consensus 130 ~~lh~~~~------------~~~~~~~~~~l~~l-~~~G---~ir~iGvS--n~~~~~l~~~~---~~~~~~~~q~~~n~ 188 (235)
+.||.+++ ..+++++++++.+. .+.| +|+++=+. |.+.+++.++. ......++-++||.
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~ 317 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNS 317 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeecc
Confidence 56787743 23567888888764 4445 34555444 34444555544 43456788889998
Q ss_pred ccccc--------cchHHHHHHHhCCeEEecccCcc
Q 026625 189 WARDI--------ENEIVPLCRELGIGIVPYCPLGR 216 (235)
Q Consensus 189 ~~~~~--------~~~l~~~~~~~gi~v~a~spl~~ 216 (235)
+.... -..+.+.++++|+.+....+.+.
T Consensus 318 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 318 IVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 76421 14577788899999999888754
No 378
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.70 E-value=5.1e+02 Score=22.50 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHH-----------------Hhc--CCCCCEEEEeccccccCCC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA-----------------LKE--LPRENIQVATKFGFVELGF 99 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~a-----------------l~~--~~R~~~~I~tK~~~~~~~~ 99 (235)
.+.++..++.+.+-+.|+.++=|...-. +-..+-+. |+. -....++++|=.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~---svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~------- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDET---AVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI------- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHH---HHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-------
Confidence 4677778899999999999997664321 11111111 010 122334444422
Q ss_pred cccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCC-H-HHHHHHHHHHHHcCCccEEEeCCCCHHH
Q 026625 100 TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-I-EETIGEMKKLVEEGKIKYIGLSEASPDT 169 (235)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~-~-~~~~~~l~~l~~~G~ir~iGvSn~~~~~ 169 (235)
.+.+.+..+++... +-|. -|+.++|+...... . .--+.++..|++.=. .-||+|.|+...
T Consensus 144 ------~t~~Ei~~Av~~i~-~~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~ 205 (327)
T TIGR03586 144 ------ATLEEIQEAVEACR-EAGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGI 205 (327)
T ss_pred ------CCHHHHHHHHHHHH-HCCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCch
Confidence 24677777777654 3343 47999999755422 2 224566666665433 369999998654
No 379
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=22.70 E-value=1.9e+02 Score=22.68 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=26.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
-++++++.......-.+-++.|.+++.+|++|++-+-
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 4666776443333445789999999999999998553
No 380
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=22.68 E-value=1.8e+02 Score=23.89 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=31.0
Q ss_pred CHHHHHHHHhcCCeeEEeeccCc-------ccccccchHHHHHHHhCCeEEecccCccc
Q 026625 166 SPDTIRRAHAVHPITAVQLEWSL-------WARDIENEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 166 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (235)
+.++.-+.++...++.+++..+. +.......+.+.++++|+.+.++.|...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 34444445555667777763221 11111256788889999999988876533
No 381
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=22.63 E-value=4e+02 Score=26.44 Aligned_cols=95 Identities=13% Similarity=0.210 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEeCCCCHHHHHHHHhcCCeeEEeec
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~ 185 (235)
-+.|++-.+.+...--....-+|+|+..+... .+.+++|.+..++ ..+.+|-+++.. +.|...+.. .+..+.
T Consensus 102 Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~tt~~-~kLl~TIrS---Rc~~v~ 175 (824)
T PRK07764 102 VDDARELRERAFFAPAESRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFATTEP-DKVIGTIRS---RTHHYP 175 (824)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEEeCCh-hhhhHHHHh---heeEEE
Confidence 44555433332222222456788888765443 4788899999998 899999998644 333322221 245566
Q ss_pred cCccccccc-chHHHHHHHhCCeE
Q 026625 186 WSLWARDIE-NEIVPLCRELGIGI 208 (235)
Q Consensus 186 ~n~~~~~~~-~~l~~~~~~~gi~v 208 (235)
|..+....- .-+.+.|++.|+.+
T Consensus 176 F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 176 FRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCC
Confidence 666544211 33455666667653
No 382
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.63 E-value=4e+02 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCC
Q 026625 41 EEDGISIIKHAFSKGITFFDTA 62 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA 62 (235)
+|.....++.|++.|++.|++-
T Consensus 12 pENT~~af~~A~~~g~d~vE~D 33 (249)
T cd08561 12 PENTLLAFEDAVELGADVLETD 33 (249)
T ss_pred CccHHHHHHHHHHhCCCEEEEE
Confidence 4777899999999999988643
No 383
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=22.61 E-value=4.7e+02 Score=22.03 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=42.4
Q ss_pred CCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhcCCeeEEeeccCcccccc---cchHH
Q 026625 123 DVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI---ENEIV 198 (235)
Q Consensus 123 g~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~---~~~l~ 198 (235)
+++.|-+=.+..+... .+..+++++-+.|+++|-+- +=-++-++-..+++.+ ....+++.-=+++-... ....+
T Consensus 104 ~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed-~Gc~aVMPlgsPIGSg~Gl~n~~~l 181 (267)
T CHL00162 104 DNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLED-IGCATVMPLGSPIGSGQGLQNLLNL 181 (267)
T ss_pred CCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHH-cCCeEEeeccCcccCCCCCCCHHHH
Confidence 4555554444333332 34679999999999998643 2233444444444333 23344444333333211 12333
Q ss_pred HHHHH-hCCeEEe
Q 026625 199 PLCRE-LGIGIVP 210 (235)
Q Consensus 199 ~~~~~-~gi~v~a 210 (235)
+...+ .++.|+.
T Consensus 182 ~~i~e~~~vpViv 194 (267)
T CHL00162 182 QIIIENAKIPVII 194 (267)
T ss_pred HHHHHcCCCcEEE
Confidence 33333 4566664
No 384
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=22.54 E-value=5e+02 Score=22.28 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHH
Q 026625 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (235)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 121 (235)
+.-+++|+...+.|+ .+|+|+. |++.+-++++- . +..+|+|........ ....+.+.+.++ ..-++
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~-s-~~PviaSHsn~ral~--~h~RNltD~~i~----~ia~~ 219 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDI-S-NAPVIASHSNARALC--DHPRNLTDAQLK----AIAET 219 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHh-c-CCCEEEeccChHHhc--CCCCCCCHHHHH----HHHHc
Confidence 567899999999987 7899974 78888888873 3 234777765543311 112233433333 22233
Q ss_pred cCCCcccEEEecc---CCCCCCHHHHHHHHHHHHHcCCccEEEeCC
Q 026625 122 LDVEYIDLYYQHR---VDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (235)
Q Consensus 122 Lg~~~iDl~~lh~---~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn 164 (235)
=|+ |-+.+.-. .+....+++.++.++..++..=+.+||+.+
T Consensus 220 GGv--igi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 220 GGV--IGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred CCE--EEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 332 32222211 123456889999999999987799999965
No 385
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=22.50 E-value=71 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.3
Q ss_pred chHHHHHHHhCCeEEecccCccc
Q 026625 195 NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 195 ~~l~~~~~~~gi~v~a~spl~~G 217 (235)
++.+.||+++|+.+.+-.|-...
T Consensus 59 E~Ai~yaer~G~~Y~V~~p~~r~ 81 (101)
T PF04800_consen 59 EDAIAYAERNGWDYEVEEPKKRK 81 (101)
T ss_dssp HHHHHHHHHCT-EEEEE-STT--
T ss_pred HHHHHHHHHcCCeEEEeCCCCCc
Confidence 78999999999999998887644
No 386
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=22.44 E-value=3.5e+02 Score=21.76 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=17.5
Q ss_pred cchHHHHHHHhCCeEEeccc
Q 026625 194 ENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 194 ~~~l~~~~~~~gi~v~a~sp 213 (235)
..++++.|+++|+.+.+|..
T Consensus 193 ~~~~v~~~~~~gl~v~~wTv 212 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWTV 212 (234)
T ss_pred CHHHHHHHHHCCCEEEEEec
Confidence 36899999999999999974
No 387
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.30 E-value=2.6e+02 Score=20.71 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeC
Q 026625 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (235)
Q Consensus 107 ~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (235)
+.+.+...+++.+.. .-|...+=..|...+...+.+.|+.+++.| +..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 445555555544332 224333344567788999999999999998 4456664
No 388
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=22.27 E-value=3.5e+02 Score=20.45 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=42.1
Q ss_pred CCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC--CCcccEEEeccCCC-CCCHHHHHHHHHHHHHc
Q 026625 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 154 (235)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~~~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~ 154 (235)
+|=.+.|+-|++... ..+..+++.++++++.+. +...|++++-.+.. ..+..++.+.|..|.+.
T Consensus 48 ~RlG~sVSKKvg~~A---------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA---------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc---------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455678888875322 346677777777776542 23449888887754 35567788888877665
No 389
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.26 E-value=2.3e+02 Score=21.56 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCeEeCCCCCCCCcH--HHHHHHHHhcCC---CCCEEEEeccccccCCCcccccCCCHHHHHHHH
Q 026625 41 EEDGISIIKHAFSKGITFFDTADKYGPYTN--EILLGKALKELP---RENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (235)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~s--E~~lG~al~~~~---R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~ 115 (235)
.++..+..+.|.+.|...+.....|+...+ ++.+-+.++.+. +.++-+.-+..+... .+++.+.+..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--------~~~~~~~~~~ 135 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL--------KTADEIAKAA 135 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC--------CCHHHHHHHH
Confidence 578889999999999999997655542222 444455554421 124444433322210 2455555543
Q ss_pred HHHHHHcCCCccc
Q 026625 116 EASLRRLDVEYID 128 (235)
Q Consensus 116 ~~sL~~Lg~~~iD 128 (235)
+.+ +..|++.+.
T Consensus 136 ~~~-~~~g~~~iK 147 (201)
T cd00945 136 RIA-AEAGADFIK 147 (201)
T ss_pred HHH-HHhCCCEEE
Confidence 333 556765543
No 390
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.11 E-value=4.8e+02 Score=21.98 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCC-ccEEEeCCCCH---HHHHH---HHhcCCeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 141 IEETIGEMKKLVEEGK-IKYIGLSEASP---DTIRR---AHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 141 ~~~~~~~l~~l~~~G~-ir~iGvSn~~~---~~l~~---~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
.+..++.+++.++++. |-.+=++-+++ ..+++ ..+...++-+-++==+.+. ..++.++|+++||..+-..+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee--~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE--SDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH--HHHHHHHHHHcCCcEEEEeC
Confidence 4456777777776643 33333333332 12222 2233344433332111111 25788999999988775433
No 391
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=22.07 E-value=3.5e+02 Score=23.55 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=39.7
Q ss_pred cCcceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCC-CCcHHHHHHHHHhc
Q 026625 21 VSKLGYGCMSLSG----CYNSPLSEEDGISIIKHAFSKGITFFDTADKYG-PYTNEILLGKALKE 80 (235)
Q Consensus 21 vs~lg~G~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~sE~~lG~al~~ 80 (235)
+.+|.+|.-++.. ..+...+.+++.++++.+.++|+..+-+--.|| +|.+++.+-+.++.
T Consensus 111 v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (360)
T TIGR00539 111 INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKL 175 (360)
T ss_pred CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHH
Confidence 4566676555432 224445778999999999999996544434566 46777776666665
No 392
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=22.04 E-value=3.4e+02 Score=20.68 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH--cCCccEEEeCCCCHHHHHHHHhcCCeeEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q 183 (235)
.+-+.+.+.++.-.+.+|.+ ++++|-. .-.+..+++++..+ +|.|-.=|--+|..-.+..++.....-++.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-~~~~QSN------~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLE-VEFRQSN------HEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC------cHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEE
Confidence 46788999999999999974 6665543 22467888887754 355555566667777788888776666788
Q ss_pred eccCcccc
Q 026625 184 LEWSLWAR 191 (235)
Q Consensus 184 ~~~n~~~~ 191 (235)
+..|-.+.
T Consensus 99 VHiSNi~a 106 (146)
T PRK13015 99 VHISNVHA 106 (146)
T ss_pred EEcCCccc
Confidence 87765554
No 393
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=21.93 E-value=2.1e+02 Score=26.04 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (235)
.+...+.+.+.+++||+...|.+ +.......++.+..++|+++|.+-
T Consensus 90 ~~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 90 TERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 45667778899999999777764 222345678888999999999864
No 394
>PRK12569 hypothetical protein; Provisional
Probab=21.90 E-value=3.5e+02 Score=22.52 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=53.5
Q ss_pred eeccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCC-Cccc
Q 026625 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELG-FTSV 102 (235)
Q Consensus 25 g~G~~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~-~~~~ 102 (235)
+||.|.+|. ..+++.-..|..|. ..| .+.| ....+-+.++--....+.|...-++.+.. .|..
T Consensus 14 sfG~~~~g~-----~~D~~lmp~ItsaNIACG-------~HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr 78 (245)
T PRK12569 14 GFGPWRIGD-----GVDEALMPLISSANIATG-------FHAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRR 78 (245)
T ss_pred CCCCcCCCC-----ccHHHHHHHhhhHHHhcc-------ccCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCC
Confidence 678887652 12677778888876 333 3566 44556666664456677777776655432 3455
Q ss_pred ccCCCHHHHHHHHHHHHHHc
Q 026625 103 IVKGTPEYVRSCCEASLRRL 122 (235)
Q Consensus 103 ~~~~~~~~i~~~~~~sL~~L 122 (235)
....+++.+.+.+...+..|
T Consensus 79 ~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 79 HINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 56678888888877776666
No 395
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.89 E-value=4.6e+02 Score=23.49 Aligned_cols=55 Identities=4% Similarity=-0.033 Sum_probs=37.7
Q ss_pred CCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccC
Q 026625 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
.+.+.+++++.. ....++..+.|+.-...+ .++.+.|+++|+.++.=..++.|.+
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~ 187 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL 187 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 467888887653 455555555566444333 7889999999999997777765544
No 396
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=21.81 E-value=3.2e+02 Score=25.18 Aligned_cols=112 Identities=10% Similarity=0.074 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEeccC---CCCCC----HHHHHHHHHHHHHc-CCccE--EEeCCCCHHHHHHHH
Q 026625 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRV---DTSVP----IEETIGEMKKLVEE-GKIKY--IGLSEASPDTIRRAH 174 (235)
Q Consensus 105 ~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~---~~~~~----~~~~~~~l~~l~~~-G~ir~--iGvSn~~~~~l~~~~ 174 (235)
.++++...+.+.+.. +| -+|++==.-. .+..+ +...++++.+..++ |+-+- +-++.-+.+++.+-.
T Consensus 179 GLsp~~~A~~~y~~~--~G--GvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra 254 (475)
T CHL00040 179 GLSAKNYGRAVYECL--RG--GLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRA 254 (475)
T ss_pred CCCHHHHHHHHHHHH--cC--CCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHH
Confidence 357777777665554 22 2444321111 01122 44577778776654 65433 333322344433322
Q ss_pred hc---CCeeEEeeccCcccccccchHHHHHHHhCCeEEecccCccccCCC
Q 026625 175 AV---HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGG 221 (235)
Q Consensus 175 ~~---~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 221 (235)
+. ....++.+.++..--...+.+.+.|++.++.++++..+. |.++.
T Consensus 255 ~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~-ga~~r 303 (475)
T CHL00040 255 VFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMH-AVIDR 303 (475)
T ss_pred HHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEeccccc-ccccc
Confidence 21 344567777666544444677778888999999999888 44443
No 397
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=21.74 E-value=5.9e+02 Score=22.85 Aligned_cols=83 Identities=13% Similarity=-0.070 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCC---C-CHHHHHHHHhcCCeeE
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---A-SPDTIRRAHAVHPITA 181 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn---~-~~~~l~~~~~~~~~~~ 181 (235)
.+++.+.+.+++.+.-... ..+-+.+-...+......+.+.++.+++.|.--+++.+| + +.+.++++.+. .++.
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld~ 131 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVRE 131 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCCE
Confidence 3567777777777665432 245566665555444567788888888877766666444 2 45556665543 2344
Q ss_pred EeeccCccc
Q 026625 182 VQLEWSLWA 190 (235)
Q Consensus 182 ~q~~~n~~~ 190 (235)
+++..+-.+
T Consensus 132 v~iSvka~d 140 (404)
T TIGR03278 132 VSFTVFATD 140 (404)
T ss_pred EEEecccCC
Confidence 555444443
No 398
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=21.60 E-value=3.3e+02 Score=19.84 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=43.9
Q ss_pred CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 026625 81 LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV---EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (235)
Q Consensus 81 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 154 (235)
.+|=.+.|+-|++.. ..+..+.+.++++.+.+.. .-.|++++-.+... .+..++.+.|+.+.+.
T Consensus 47 ~~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 47 GPRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CCEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 356678888887753 2467777777777777654 24699999887653 4566777777766543
No 399
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=21.60 E-value=1.6e+02 Score=26.17 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEecccccc
Q 026625 45 ISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVE 96 (235)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~ 96 (235)
..++++|+|+|-+++|.+-.-. -=|+.--+.=+...+..++|.+-+++..
T Consensus 99 E~VVkacienG~~~vDISGEP~--f~E~mq~kYhd~A~ekGVYIVsaCGfDS 148 (423)
T KOG2733|consen 99 EPVVKACIENGTHHVDISGEPQ--FMERMQLKYHDLAKEKGVYIVSACGFDS 148 (423)
T ss_pred cHHHHHHHHcCCceeccCCCHH--HHHHHHHHHHHHHHhcCeEEEeecccCC
Confidence 4789999999999999984211 0233333222224577899988888755
No 400
>PRK10508 hypothetical protein; Provisional
Probab=21.57 E-value=1.5e+02 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc
Q 026625 106 GTPEYVRSCCEASLRRLDVEYI 127 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~i 127 (235)
.+++.+.+.+++..+++|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 5789999999999999998776
No 401
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=21.57 E-value=4.5e+02 Score=21.46 Aligned_cols=96 Identities=18% Similarity=0.325 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC------ccEEEeCCCCHHHHHHHHhc---CCe
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK------IKYIGLSEASPDTIRRAHAV---HPI 179 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~------ir~iGvSn~~~~~l~~~~~~---~~~ 179 (235)
......++..-+......++-+++..........|.+.-.+.|.+.|. .-+-|+++. +.+.++.+. ..+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTL--DSvvRA~kVF~~~~f 153 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTL--DSVVRARKVFGTNDF 153 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHH--HHHHHHHHHcCcCcE
Confidence 345566777777777778999999888777778889999999999995 345566653 444444443 445
Q ss_pred eEEeeccCcccccccchHHHHHHHhCCeEEecc
Q 026625 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (235)
Q Consensus 180 ~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~s 212 (235)
.++--.|+ .+..+=.|+.+||.-+++.
T Consensus 154 tIItQ~FH------ceRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 154 TIITQRFH------CERALFIARQMGIDAICFA 180 (235)
T ss_pred EEEecccc------cHHHHHHHHHhCCceEEec
Confidence 54444443 2556667888998877654
No 402
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=21.56 E-value=32 Score=29.67 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeE---eCCCCCCCCcHHHHHH
Q 026625 39 LSEEDGISIIKHAFSKGITFF---DTADKYGPYTNEILLG 75 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~---DtA~~Yg~g~sE~~lG 75 (235)
.+.++.++++..|-+.||+.| ||-. +++..+.
T Consensus 70 yT~~di~~lv~yA~~~gI~VIPeid~PG-----H~~~~l~ 104 (351)
T PF00728_consen 70 YTKEDIRELVAYAKERGIEVIPEIDTPG-----HAEAWLK 104 (351)
T ss_dssp BEHHHHHHHHHHHHHTT-EEEEEEEESS-----S-HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCceeeeccCch-----HHHHHHH
Confidence 588999999999999999966 5433 4555543
No 403
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=21.51 E-value=2.2e+02 Score=24.38 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc-CCeeEE
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAV 182 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~-~~~~~~ 182 (235)
.+.+++.+.+-+++.|+|++=++.+-.-+.. ......+++|++..+++.-. -++.++-..... ....+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~f- 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPF- 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEE-
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCe-
Confidence 4677888999999999885433333322221 12335788888887765422 123332222211 22222
Q ss_pred eeccCcccccccchHHHHHHHhCCeEEe
Q 026625 183 QLEWSLWARDIENEIVPLCRELGIGIVP 210 (235)
Q Consensus 183 q~~~n~~~~~~~~~l~~~~~~~gi~v~a 210 (235)
+++.+-.......+.+.++++|+.+..
T Consensus 204 -vN~tP~~~a~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 204 -VNGTPSNIADDPALVELAEEKGVPIAG 230 (295)
T ss_dssp -EE-SSSTTTTSHHHHHHHHHHTEEEEE
T ss_pred -EeccCccccCCHHHHHHHHHcCCCeec
Confidence 222222222126788888888888764
No 404
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=21.49 E-value=5.5e+02 Score=22.37 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=52.6
Q ss_pred ccEEEeccCCCCCC----HHHHHHHHHHHH---------HcCCccEEEeCCC---CHHHHHHHHhcCCeeEEeec-----
Q 026625 127 IDLYYQHRVDTSVP----IEETIGEMKKLV---------EEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQLE----- 185 (235)
Q Consensus 127 iDl~~lh~~~~~~~----~~~~~~~l~~l~---------~~G~ir~iGvSn~---~~~~l~~~~~~~~~~~~q~~----- 185 (235)
+.++.++.+..... .+.+++++.+.. +.+.|.-||.++. +.+++.++++...+.++.+.
T Consensus 112 ~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s 191 (399)
T cd00316 112 IPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTT 191 (399)
T ss_pred CceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCC
Confidence 67888888766532 233444444333 2345888898875 55788888877665555443
Q ss_pred -----------cCccccc-ccchHHHHHHHh-CCeEEecccCc
Q 026625 186 -----------WSLWARD-IENEIVPLCREL-GIGIVPYCPLG 215 (235)
Q Consensus 186 -----------~n~~~~~-~~~~l~~~~~~~-gi~v~a~spl~ 215 (235)
+|+.... ....+.++.+++ |+.++...|++
T Consensus 192 ~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G 234 (399)
T cd00316 192 VEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIG 234 (399)
T ss_pred HHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcC
Confidence 1222211 123455566554 99988877764
No 405
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.47 E-value=5.6e+02 Score=22.47 Aligned_cols=88 Identities=10% Similarity=0.085 Sum_probs=57.2
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC----CccEEEeC--CCCHHHHHHHHh---cCCeeEEeeccCcc
Q 026625 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEG----KIKYIGLS--EASPDTIRRAHA---VHPITAVQLEWSLW 189 (235)
Q Consensus 130 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvS--n~~~~~l~~~~~---~~~~~~~q~~~n~~ 189 (235)
+-||.+++. .++++++++++++.+.+ +|+++=+. |-+.++++++.+ ..+..++-++||.+
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 667877643 23578999999887754 24455443 444566555544 34566788899987
Q ss_pred ccc-----cc---chHHHHHHHhCCeEEecccCccc
Q 026625 190 ARD-----IE---NEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 190 ~~~-----~~---~~l~~~~~~~gi~v~a~spl~~G 217 (235)
... .. ..+.+.++++|+.+......+..
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 631 11 44666788999999988877543
No 406
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.44 E-value=4.5e+02 Score=21.87 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcc
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIK 158 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir 158 (235)
.+.+.-....+-+.+.+++++|-+=.+-.+... .+.-+++++-+.|+++|-+-
T Consensus 80 ~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 80 RTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred CCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 456666666777889999998888776655443 34568999999999999653
No 407
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.36 E-value=4e+02 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=13.8
Q ss_pred HHHHHHHcCCCeEeCCCC
Q 026625 47 IIKHAFSKGITFFDTADK 64 (235)
Q Consensus 47 ~l~~A~~~Gi~~~DtA~~ 64 (235)
-|...++.|+|+||--..
T Consensus 46 sI~~QL~~GvR~LdLdv~ 63 (267)
T cd08590 46 SITDQLDLGARFLELDVH 63 (267)
T ss_pred CHHHHHhhCCcEEEEeee
Confidence 467788999999985443
No 408
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.29 E-value=3.5e+02 Score=23.46 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCC--CcHHH----HHHHHHhc------CCCCCEE-----EEeccccccCC--C-
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGP--YTNEI----LLGKALKE------LPRENIQ-----VATKFGFVELG--F- 99 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~----~lG~al~~------~~R~~~~-----I~tK~~~~~~~--~- 99 (235)
.++-.+++-+.++++|.+.+-|...+.. +..|. ..-+..+. ..|+++. |+.=+++...- +
T Consensus 51 ~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g 130 (317)
T KOG1579|consen 51 NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADG 130 (317)
T ss_pred ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCC
Confidence 3466778888899999999998864442 11111 11111111 2344333 33233322110 0
Q ss_pred ----cccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHH
Q 026625 100 ----TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKL 151 (235)
Q Consensus 100 ----~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l 151 (235)
+......+.+.+.+-.++.|+.+.-.-+|++.+...+.......+++.|+++
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~ 186 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQEL 186 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhc
Confidence 1122344677888889999999877779999998765432223334444443
No 409
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.24 E-value=5.8e+02 Score=22.57 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=54.5
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHh-cCCeeEEeeccCccccccc-chHHHHHHHh
Q 026625 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA-VHPITAVQLEWSLWARDIE-NEIVPLCREL 204 (235)
Q Consensus 127 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~ 204 (235)
=|-+++..|. .......+..+...+.++..-+...+.+.+++++. ..++.++..+-|+.-.-.+ ..+.+.|+++
T Consensus 92 Gd~Il~~~~~----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~ 167 (388)
T PRK08861 92 DDLIVAPHDC----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAV 167 (388)
T ss_pred CCEEEEcCCc----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 3666665442 23344445444444445554455566788877764 3455566556666443323 6889999999
Q ss_pred CCeEEecccCccccCC
Q 026625 205 GIGIVPYCPLGRGFFG 220 (235)
Q Consensus 205 gi~v~a~spl~~G~L~ 220 (235)
|+-++.=..++.|.+.
T Consensus 168 gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 168 GALVAVDNTFLTPVLQ 183 (388)
T ss_pred CCEEEEECCccccccC
Confidence 9999977777766543
No 410
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=21.24 E-value=5.5e+02 Score=22.34 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
+++.....-+...+.|++.|=.-..-++...+...=+++++.-.+++.|.-=.... .+.+. ..+.+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~----------~~~~~----A~~~~ 208 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGG----------WTLEE----AIRLA 208 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCC----------cCHHH----HHHHH
Confidence 45666666666667999987544433322233333346666333333333322211 23331 11222
Q ss_pred HHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEeCCCCHHHHHHHHhcCCeeEEeeccCccccccc-chH
Q 026625 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIE-NEI 197 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~l 197 (235)
+.|. ..++.++..|-.. +..+.+.++.+.- .=-+.|=|.++..++.++++...++++|+...-.-.-.+ ..+
T Consensus 209 ~~l~--~~~l~~iEeP~~~----~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~ki 282 (372)
T COG4948 209 RALE--EYGLEWIEEPLPP----DDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKI 282 (372)
T ss_pred HHhc--ccCcceEECCCCc----cCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHH
Confidence 3332 2236677766443 4567777787753 444667788999999999999889999997654332122 678
Q ss_pred HHHHHHhCCeEEeccc
Q 026625 198 VPLCRELGIGIVPYCP 213 (235)
Q Consensus 198 ~~~~~~~gi~v~a~sp 213 (235)
.+.|+.+++.+..+.+
T Consensus 283 a~~A~~~~~~v~~h~~ 298 (372)
T COG4948 283 AALAEGFGVMVGPHVE 298 (372)
T ss_pred HHHHHHhCCceeccCc
Confidence 8888888888887755
No 411
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.21 E-value=5.4e+02 Score=22.22 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHc-CCCeEeCCCCCCCC--cHHHHHHHHHhc---CC-CCCEEEEeccccccCCCcccccCCCHHHHHH
Q 026625 41 EEDGISIIKHAFSK-GITFFDTADKYGPY--TNEILLGKALKE---LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (235)
Q Consensus 41 ~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g--~sE~~lG~al~~---~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (235)
.++..++++...+. |++-|--+. |+. .....+.+.++. ++ -+.+-|.|+..... +..+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~-----------P~rit~ 210 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI-----------PQRITD 210 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC-----------chhcCH
Confidence 56777777776544 777554332 211 122223333333 32 24567777764322 344555
Q ss_pred HHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 026625 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 156 (235)
Q Consensus 114 ~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 156 (235)
.+-+.|++.|...+. ..|.-.+..-.+++.++++.|++.|.
T Consensus 211 el~~~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 211 ELCELLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHHHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCC
Confidence 565677777654333 33332222223678999999999996
No 412
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.21 E-value=1.4e+02 Score=25.50 Aligned_cols=49 Identities=20% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 157 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 157 (235)
.+...+.+.+.+++||++ +|....-........+-+.+.+.+|.++|.|
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 456777888999999985 5742111111112234567788899999987
No 413
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=21.21 E-value=4.7e+02 Score=21.51 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc---CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHH
Q 026625 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (235)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 119 (235)
.+.++++.|-+.|+...=.. .+........+-+.++. ..-+.+.|.--+|.. .|+.+.+-+....
T Consensus 111 ~~~~~i~~a~~~G~~v~~~~-~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~-----------~P~~v~~lv~~l~ 178 (259)
T cd07939 111 QLRRLVGRAKDRGLFVSVGA-EDASRADPDFLIEFAEVAQEAGADRLRFADTVGIL-----------DPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHHCCCeEEEee-ccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-----------CHHHHHHHHHHHH
Confidence 34567777777786422111 12211223333333332 334566666666543 4777777777777
Q ss_pred HHcCCCcccEEEeccCCC
Q 026625 120 RRLDVEYIDLYYQHRVDT 137 (235)
Q Consensus 120 ~~Lg~~~iDl~~lh~~~~ 137 (235)
+++++ . +-+|..+.
T Consensus 179 ~~~~~---~-l~~H~Hn~ 192 (259)
T cd07939 179 AATDL---P-LEFHAHND 192 (259)
T ss_pred HhcCC---e-EEEEecCC
Confidence 66652 2 45565544
No 414
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=4.9e+02 Score=21.76 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHH----H-cCC-ccEEEeCCCCH-----HHHHHHH
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLV----E-EGK-IKYIGLSEASP-----DTIRRAH 174 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~----~-~G~-ir~iGvSn~~~-----~~l~~~~ 174 (235)
.+.+.+.+-++.|++.|.-+ |. +..+++.|++.. + -.+ |+.+|+.++.. -|+.-++
T Consensus 41 v~~~~fq~klensr~kle~S--~F-----------l~~~lEqLq~~l~~~~~piek~~vclglG~f~~~~~a~~Qlal~i 107 (281)
T KOG3131|consen 41 VNVEKFQPKLENSRTKLEQS--DF-----------LLVALEQLQQQLEGIRKPIEKIIVCLGLGPFSRTYHALHQLALVI 107 (281)
T ss_pred ccHHHHHHHHHHHHHHHHHH--HH-----------HHHHHHHHhHHHhhhccchhheEEEEeeccccccccHHHHHHHHH
Confidence 45677888889898888532 11 223344444333 1 124 48999988753 3444444
Q ss_pred hcCC-eeEEeeccCcccccccchHHHHHHHhCCeEEecccCccc
Q 026625 175 AVHP-ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRG 217 (235)
Q Consensus 175 ~~~~-~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 217 (235)
+..+ +...-...+++++-....=.++.+..|--|+.-.+.+.-
T Consensus 108 ei~r~fk~~~~~~s~fDPvf~k~E~eyLeslG~cvLs~~e~~~~ 151 (281)
T KOG3131|consen 108 EIHRHFKIRDVEASYFDPVFRKSEKEYLESLGGCVLSKDEAGKH 151 (281)
T ss_pred HHHHHhccccceeeeeCcchhhhHHHHHHhcCCeEeccCccccc
Confidence 4321 222224455666544467788999999888877776644
No 415
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=21.16 E-value=3.2e+02 Score=19.48 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 026625 81 LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV---EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (235)
Q Consensus 81 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~ 154 (235)
.+|=.+.|+-|++.. ..+..+.+.+++.++.... ...|++++-.+... .+..+..+.|..|.+.
T Consensus 37 ~~R~GisVsKKvgkA----------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 37 HFRVGISVSKKVGNA----------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred CcEEEEEEecccCch----------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 345567888887652 3477788888777766532 35799999887653 4566777777776554
No 416
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=21.16 E-value=1.5e+02 Score=27.18 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccE
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (235)
.+...+.+.+.|++||++ .|.+. ..........+.+.+.+|.++|.|-.
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 456777889999999997 67542 12222246678999999999998643
No 417
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=21.15 E-value=4.6e+02 Score=21.40 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCCeEeCCCCCCC---CcHHHHHHHHHhc---CC-CCCEEEEeccccccCCCcccccCCCHHHHHHHHHH
Q 026625 45 ISIIKHAFSKGITFFDTADKYGP---YTNEILLGKALKE---LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (235)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~---g~sE~~lG~al~~---~~-R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 117 (235)
.++++.|.+.|+..|-+.++.-. +..++.+-...+. .+ .-++-|-+=+-....+ .......+.
T Consensus 19 ~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~----------~~~~d~~~~ 88 (237)
T COG1387 19 EEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILP----------DGSLDFLDE 88 (237)
T ss_pred HHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecC----------CCCcccchh
Confidence 45689999999999877776654 4444444444432 11 1123332222111110 011111112
Q ss_pred HHHHcCCCcccE--EEeccCC-CCCCHHHHHHHHHHHHHcCCccEEEeCCC-------------CHHHHHHHHhcCCeeE
Q 026625 118 SLRRLDVEYIDL--YYQHRVD-TSVPIEETIGEMKKLVEEGKIKYIGLSEA-------------SPDTIRRAHAVHPITA 181 (235)
Q Consensus 118 sL~~Lg~~~iDl--~~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iGvSn~-------------~~~~l~~~~~~~~~~~ 181 (235)
-+.. +|. ..+|.+. .........+.+..+...+.|..||=-+. ....+.++++.... +
T Consensus 89 ~~~~-----lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-a 162 (237)
T COG1387 89 ILKE-----LDYVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNGK-A 162 (237)
T ss_pred hHhh-----cCEEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhCc-E
Confidence 2222 444 5568752 22345567888889999999888876554 12233333333332 3
Q ss_pred EeeccCcccccccchHHHHHHHhCCeEE
Q 026625 182 VQLEWSLWARDIENEIVPLCRELGIGIV 209 (235)
Q Consensus 182 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 209 (235)
+.++-+.-.......++..|++.|+.+.
T Consensus 163 leins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 163 LEINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred EeecCCcCccCchHHHHHHHHHhCCeEE
Confidence 4444442233334789999999988765
No 418
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.14 E-value=1.1e+02 Score=26.50 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHcCC--CcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 026625 109 EYVRSCCEASLRRLDV--EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~--~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (235)
+...+.+.+.+++||+ ++-..+. .........+++.+.+|.++|.|-
T Consensus 87 ~~~~~~~~~~~~~lgi~~~~~~~~~---T~~~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 87 LRYVDEQEEQFQRLGVWVDWENPYK---TMDPEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHhCceecCCCCeE---CCCHHHHHHHHHHHHHHHHCCCEe
Confidence 4556777889999998 3322222 222234567899999999999864
No 419
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.09 E-value=3.2e+02 Score=20.65 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH--cCCccEEEeCCCCHHHHHHHHhcCCeeEEe
Q 026625 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 106 ~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~ir~iGvSn~~~~~l~~~~~~~~~~~~q 183 (235)
.+-+.+.+.++.--+.+|++ ++++|-. .-.+..+++++..+ +|.|-.=|--+|..-.+..++.....-++.
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~-v~~~QSN------~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VE 96 (140)
T cd00466 24 TTLADIEALLRELAAELGVE-VEFFQSN------HEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIE 96 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC------cHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEE
Confidence 46788899999888889974 6666543 22468888887754 345555555667777788888776666788
Q ss_pred eccCcccc
Q 026625 184 LEWSLWAR 191 (235)
Q Consensus 184 ~~~n~~~~ 191 (235)
+..|-.+.
T Consensus 97 VHiSNi~a 104 (140)
T cd00466 97 VHISNIHA 104 (140)
T ss_pred EecCCccc
Confidence 87766554
No 420
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.06 E-value=5.6e+02 Score=22.34 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=9.8
Q ss_pred CCeEEecccCccccCCC
Q 026625 205 GIGIVPYCPLGRGFFGG 221 (235)
Q Consensus 205 gi~v~a~spl~~G~L~~ 221 (235)
+-.+++..|=|.|.+.+
T Consensus 253 ~~~ylg~G~gA~s~~~~ 269 (353)
T PRK05904 253 TKDWAAIGWGAHGFENN 269 (353)
T ss_pred CCCEEEEcCCcCcccCC
Confidence 45566666666665544
No 421
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=21.03 E-value=1.2e+02 Score=25.00 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=19.7
Q ss_pred eeccccCCC---------------CCCCCCCHHHHHHHHHHHHHcCCC
Q 026625 25 GYGCMSLSG---------------CYNSPLSEEDGISIIKHAFSKGIT 57 (235)
Q Consensus 25 g~G~~~~~~---------------~~~~~~~~~~~~~~l~~A~~~Gi~ 57 (235)
|||.|++|. .|... |+....+.++.|.+.|+.
T Consensus 13 ~fG~w~mG~De~~l~lvsSANIACGfHAG-Dp~~M~rtV~lA~e~gV~ 59 (252)
T COG1540 13 GFGAWRMGDDEALLPLVSSANIACGFHAG-DPLTMRRTVRLAKENGVA 59 (252)
T ss_pred ccCCcccCCcHHHHHHHhhhhHhhcccCC-CHHHHHHHHHHHHHcCCe
Confidence 678887775 12222 555666777777777764
No 422
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=21.00 E-value=2.4e+02 Score=24.71 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=38.5
Q ss_pred CCHHHHHHHHh-cCCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCccccC
Q 026625 165 ASPDTIRRAHA-VHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFF 219 (235)
Q Consensus 165 ~~~~~l~~~~~-~~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 219 (235)
.+.+.+++++. ..+..++-.+.|+.-...+ +.+.+.|+++|+.++.=+.++.+.+
T Consensus 124 ~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 124 NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 35777877764 3556566667776554333 7899999999999998777765543
No 423
>PF13289 SIR2_2: SIR2-like domain
Probab=20.98 E-value=2.9e+02 Score=19.76 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHH----hcCCeeEEeeccCcccccccchHHHHHHHhCCeEE
Q 026625 142 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH----AVHPITAVQLEWSLWARDIENEIVPLCRELGIGIV 209 (235)
Q Consensus 142 ~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~----~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~ 209 (235)
...++.+..+.....+-.||.|-.++ .+..++ +..+- ..+-.|-+.........-++.+++||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGK-SRPRHYIVIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccC-CCccEEEEEcCCchHHHHHHHHHcCCEEC
Confidence 35777888888888999999996654 333333 22111 00111111111112567888889999875
No 424
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.96 E-value=2.4e+02 Score=28.17 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCc--ccEEEeccCCCCCC---HHHHHHHHHHHHHcCCccEEEeCCCCHHHHHH
Q 026625 113 SCCEASLRRLDVEY--IDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 172 (235)
Q Consensus 113 ~~~~~sL~~Lg~~~--iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~ 172 (235)
=++.-+|..+=..+ ++++++.-|....+ ++.++++|..+... ++.|||-+|..+-.+.
T Consensus 826 LalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e~ 888 (908)
T COG0419 826 LALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKER 888 (908)
T ss_pred HHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHh
Confidence 34555555554455 99999999977654 45688888888888 8899999998555433
No 425
>PLN02775 Probable dihydrodipicolinate reductase
Probab=20.93 E-value=5.3e+02 Score=22.00 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEeCCCCHHHHHHHHhc
Q 026625 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (235)
Q Consensus 115 ~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~ 176 (235)
++..|..+..++.|++.+..-. .+.+.+.++.+.+.|+---+|.+.|+.++++++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTL----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCC----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 3445544444578877776442 356788888888889888889999998888777654
No 426
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=20.82 E-value=2.6e+02 Score=25.84 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 026625 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 158 (235)
Q Consensus 108 ~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 158 (235)
.+...+.+.+.+++|++.+.|.+ |.....+.++.+..++|+++|.+=
T Consensus 100 a~~~~~~f~~d~~~Lni~~~~~~----~rat~hi~~ii~~i~~L~~kG~aY 146 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERPSIV----CNATEHIQDMIALIKRLEARGHTY 146 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCCcee----cCcccHHHHHHHHHHHHHHCCCEE
Confidence 45667788889999999887766 233456788999999999999764
No 427
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.73 E-value=5.7e+02 Score=22.25 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=49.3
Q ss_pred CCEEEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcCCCcccEEEeccCCC-----CCC--HHHHHHHHHHHHHcCC
Q 026625 84 ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVP--IEETIGEMKKLVEEGK 156 (235)
Q Consensus 84 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~-----~~~--~~~~~~~l~~l~~~G~ 156 (235)
.++.|..|++...... ...+.+... .+-+.|+..|+|+|++ |.... ... ....++.+.+.++ +.
T Consensus 214 ~~~~v~~R~s~~~~~~----~g~~~ee~~-~i~~~L~~~GvD~I~V---s~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~ 284 (353)
T cd04735 214 KDFILGYRFSPEEPEE----PGIRMEDTL-ALVDKLADKGLDYLHI---SLWDFDRKSRRGRDDNQTIMELVKERIA-GR 284 (353)
T ss_pred CCceEEEEECcccccC----CCCCHHHHH-HHHHHHHHcCCCEEEe---ccCccccccccCCcchHHHHHHHHHHhC-CC
Confidence 5888999987643211 123444333 3445667778766655 32111 011 1223344444332 45
Q ss_pred ccEEEeCCC-CHHHHHHHHhcCCeeEEee
Q 026625 157 IKYIGLSEA-SPDTIRRAHAVHPITAVQL 184 (235)
Q Consensus 157 ir~iGvSn~-~~~~l~~~~~~~~~~~~q~ 184 (235)
+--+++... +++..+++++. ..+.+.+
T Consensus 285 iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~ 312 (353)
T cd04735 285 LPLIAVGSINTPDDALEALET-GADLVAI 312 (353)
T ss_pred CCEEEECCCCCHHHHHHHHHc-CCChHHH
Confidence 677888775 78999988876 4555543
No 428
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.68 E-value=1.4e+02 Score=21.20 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=29.7
Q ss_pred CHHHHHHHHhc-CCeeEEeeccCcccccccchHHHHHHHhCCeEEeccc
Q 026625 166 SPDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (235)
Q Consensus 166 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~sp 213 (235)
+.+++..+... .+|+++-+-..--.....+++.++++++||++..+..
T Consensus 40 ~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 40 TPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp ETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred CHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 45777777665 3466665544333333347899999999999987653
No 429
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=20.64 E-value=6e+02 Score=22.59 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhc-CCeeEEeeccCccccccc-chHHHHHHHhCCeEEecccCcccc
Q 026625 165 ASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGF 218 (235)
Q Consensus 165 ~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 218 (235)
.+.+.+++++.. ....++..+.|+.-.-.+ +++.+.|+++|+.++.=..++.|.
T Consensus 130 ~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~ 185 (418)
T TIGR01326 130 DDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY 185 (418)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh
Confidence 367777777643 344455555555332222 788999999999988766665553
No 430
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.60 E-value=1.5e+02 Score=21.38 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcC
Q 026625 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKEL 81 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~ 81 (235)
.+.+.-.+++...++.|.+.-+.|..|| -+...+-.|.+..
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~g--Is~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHG--VAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 5677778899999999999999999999 6999999999873
No 431
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=20.52 E-value=87 Score=23.86 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCcccEEEe------ccCCCCCCHHHHHHHHHHHHHcCCccEE
Q 026625 113 SCCEASLRRLDVEYIDLYYQ------HRVDTSVPIEETIGEMKKLVEEGKIKYI 160 (235)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~l------h~~~~~~~~~~~~~~l~~l~~~G~ir~i 160 (235)
..++.+.+.|.++++|+++= ..|.....-...+.+.+++.+.+=+..|
T Consensus 89 adI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~~~~~GvG~I 142 (152)
T KOG3380|consen 89 ADIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKLVAKSGVGCI 142 (152)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHhcCCceE
Confidence 35778889999999999652 3344433334588899999988766555
No 432
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=20.46 E-value=6e+02 Score=22.44 Aligned_cols=140 Identities=18% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCHHHHHHHHH-------HHHHcCCCeEeCC-------------------CCCCCCcHH---HH---HHHHHhcCCCCCE
Q 026625 39 LSEEDGISIIK-------HAFSKGITFFDTA-------------------DKYGPYTNE---IL---LGKALKELPRENI 86 (235)
Q Consensus 39 ~~~~~~~~~l~-------~A~~~Gi~~~DtA-------------------~~Yg~g~sE---~~---lG~al~~~~R~~~ 86 (235)
.+.+++.++++ .|.++|+.-++.- +.|| |.-| ++ |=+++++.-.+++
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YG-GSlENR~Rf~~EVv~aVr~~vg~~~ 217 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYG-GSLENRARFLLEVVDAVREAVGADF 217 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccC-CcHHHHHHHHHHHHHHHHHHhCCCc
Confidence 56777666665 4668999877543 2333 2333 12 2223333445666
Q ss_pred EEEeccccccCCCcccccCCCHHHHHHHHHHHHHHcC-CCcccEEEeccCC--CCC-C-HHHHHHHHHHHHHcCCccEEE
Q 026625 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVD--TSV-P-IEETIGEMKKLVEEGKIKYIG 161 (235)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~~~iDl~~lh~~~--~~~-~-~~~~~~~l~~l~~~G~ir~iG 161 (235)
.|.-+++...... ....+.+... .+-+.|+..| +|||++.--+... ... . ..-........++...+--+.
T Consensus 218 ~vg~Rls~~d~~~---~~g~~~~e~~-~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~ 293 (363)
T COG1902 218 PVGVRLSPDDFFD---GGGLTIEEAV-ELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIA 293 (363)
T ss_pred eEEEEECccccCC---CCCCCHHHHH-HHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEE
Confidence 7888887755310 0123333333 4567888999 7998887766531 111 1 112334455566666677777
Q ss_pred eC-CCCHHHHHHHHhcCCeeEEe
Q 026625 162 LS-EASPDTIRRAHAVHPITAVQ 183 (235)
Q Consensus 162 vS-n~~~~~l~~~~~~~~~~~~q 183 (235)
+. -+++++.+++++....|.+=
T Consensus 294 ~G~i~~~~~Ae~~l~~g~aDlVa 316 (363)
T COG1902 294 VGGINDPEQAEEILASGRADLVA 316 (363)
T ss_pred eCCCCCHHHHHHHHHcCCCCEEE
Confidence 76 37889999999886555443
No 433
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.42 E-value=2.5e+02 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCc----HHHHHHHHHhcCCCCCEEEEe
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYT----NEILLGKALKELPRENIQVAT 90 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~----sE~~lG~al~~~~R~~~~I~t 90 (235)
+.....+.|+.|++.|++.|-.+....... ....+.+++++..++.++|..
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~Gilvva 141 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFC 141 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEE
Confidence 567788999999999999998885443211 145677777763344555543
No 434
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=20.31 E-value=52 Score=26.04 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=11.5
Q ss_pred HHHHHcCCCcccEEEe
Q 026625 117 ASLRRLDVEYIDLYYQ 132 (235)
Q Consensus 117 ~sL~~Lg~~~iDl~~l 132 (235)
+.|+.||+||||==-+
T Consensus 87 qiLealgVD~IDESEV 102 (208)
T PF01680_consen 87 QILEALGVDYIDESEV 102 (208)
T ss_dssp HHHHHTT-SEEEEETT
T ss_pred hhHHHhCCceeccccc
Confidence 4689999999996433
No 435
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.29 E-value=4.3e+02 Score=20.75 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhc----CCCCCEEEEeccccccCCCcccccCCCHHHHHHHHHHH
Q 026625 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (235)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 118 (235)
+..+.|.. +++-+-.+|+.++...-.-++.+-.+++. .|...|++++-........ ........+..++.+++.
T Consensus 50 ~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~-~~~~~~~~~~~~~~~r~~ 127 (178)
T PF14606_consen 50 EVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYF-DNSRGETVEEFREALREA 127 (178)
T ss_dssp HHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS---TTS--HHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccccc-CchHHHHHHHHHHHHHHH
Confidence 33344443 36667777777775543334444445544 5667788888766543211 111123456777778888
Q ss_pred HHHc-CCCcccEEEeccCC
Q 026625 119 LRRL-DVEYIDLYYQHRVD 136 (235)
Q Consensus 119 L~~L-g~~~iDl~~lh~~~ 136 (235)
.+.| .-..-++++++..+
T Consensus 128 v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 128 VEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHcCCCcEEEeCchh
Confidence 8777 12245788887664
No 436
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.27 E-value=3.9e+02 Score=20.25 Aligned_cols=95 Identities=18% Similarity=0.054 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCCCCCCCCcHHHHHHHHHhcCCCC-CEEEEeccccccCCCcccccCCCHHHHHHHHHHH
Q 026625 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (235)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 118 (235)
+.+...++++.+++.|++-+-+.. ..+..+.+. .++ ++-|..+++..... ...+...+.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 678899999999999999886653 233333332 233 56666776643210 1123333444433
Q ss_pred HHHcCCCcccEEEeccCCC---CCCHHHHHHHHHHHHHc
Q 026625 119 LRRLDVEYIDLYYQHRVDT---SVPIEETIGEMKKLVEE 154 (235)
Q Consensus 119 L~~Lg~~~iDl~~lh~~~~---~~~~~~~~~~l~~l~~~ 154 (235)
.++|.|. ++++-|.. ....+++.+.++++.+.
T Consensus 75 -~~~Gad~---i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADE---IDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCE---EEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 4456544 44443311 11245677777777765
No 437
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=20.25 E-value=2.1e+02 Score=21.09 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCccEEEe
Q 026625 113 SCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGL 162 (235)
Q Consensus 113 ~~~~~sL~~Lg~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iGv 162 (235)
..+++.|+.+....+|.++++..+.-. ...+....++.|.+.-.|+-+-+
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 345556666666678999998876542 34566777777777634444444
No 438
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=20.13 E-value=1.5e+02 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCccE
Q 026625 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (235)
Q Consensus 109 ~~i~~~~~~sL~~Lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (235)
+.+.+.+++.++++++++ |.|. . +......+.+-+.+++|.++|.|-.
T Consensus 68 ~~~~~~~~~~~~~~~I~~-D~F~-r-Tt~~~h~~~v~~i~~~L~~~G~I~~ 115 (391)
T PF09334_consen 68 DKYSAKFKELLEALNISY-DRFI-R-TTDDRHKEFVQEIFKRLYDNGYIYK 115 (391)
T ss_dssp HHHHHHHHHHHHHTT----SEEE-E-TTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCC-ccee-C-CCCHHHHHHHHHHHHHHHhcCceee
Confidence 456788999999999986 7644 2 2222334556788889999998753
No 439
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=20.10 E-value=4.7e+02 Score=21.06 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHc-----CCCeEeCCCCCCCCcHHHHHHHHHhcC-CCCCEEEEecccc
Q 026625 39 LSEEDGISIIKHAFSK-----GITFFDTADKYGPYTNEILLGKALKEL-PRENIQVATKFGF 94 (235)
Q Consensus 39 ~~~~~~~~~l~~A~~~-----Gi~~~DtA~~Yg~g~sE~~lG~al~~~-~R~~~~I~tK~~~ 94 (235)
.++++....++.|++. |+|--=.+..-. ++..+...++.. .|.-+||=++...
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~---~~~~m~~vl~~l~~~gl~FvDS~T~~ 129 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTS---DREAMRWVLEVLKERGLFFVDSRTTP 129 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----HHHHHHHHHHHHHTT-EEEE-S--T
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccC---CHHHHHHHHHHHHHcCCEEEeCCCCc
Confidence 4889999999999964 455443333333 677777777663 4555666466543
No 440
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.10 E-value=3.4e+02 Score=23.70 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=40.2
Q ss_pred cCcceeccccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeEeCCCCCC-CCcHHHHHHHHHhc
Q 026625 21 VSKLGYGCMSLSG----CYNSPLSEEDGISIIKHAFSKGITFFDTADKYG-PYTNEILLGKALKE 80 (235)
Q Consensus 21 vs~lg~G~~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~sE~~lG~al~~ 80 (235)
+.+|.+|.-++.. ..+...+.+++.++++.+.++|+..+-+.=.|| +|++++.+-+.++.
T Consensus 114 ~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 178 (353)
T PRK05904 114 VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNF 178 (353)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHH
Confidence 5567777655543 234445788999999999999986333333455 56777777666665
No 441
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.07 E-value=1.4e+02 Score=16.69 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHhcCCeeEEeeccCcccccccchHHHHHHH
Q 026625 163 SEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRE 203 (235)
Q Consensus 163 Sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~ 203 (235)
++|+.++|...+..+.+.+-+.. ..+ ++|++.+++
T Consensus 2 dtWs~~~L~~wL~~~gi~~~~~~---~~r---d~Ll~~~k~ 36 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGIPVPKSA---KTR---DELLKLAKK 36 (38)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCC---CCH---HHHHHHHHH
Confidence 56777777777776554333322 112 567766665
No 442
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=50 Score=26.67 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=12.3
Q ss_pred cCCCeEeCCCCCC
Q 026625 54 KGITFFDTADKYG 66 (235)
Q Consensus 54 ~Gi~~~DtA~~Yg 66 (235)
.|.++|++++.||
T Consensus 199 ~G~ryF~c~p~yG 211 (234)
T KOG3206|consen 199 NGKRYFECAPKYG 211 (234)
T ss_pred cceEeeecCCccC
Confidence 6899999999998
Done!