Query 026627
Match_columns 235
No_of_seqs 119 out of 1103
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 9.4E-64 2E-68 412.9 30.2 226 6-231 1-226 (227)
2 KOG0176 20S proteasome, regula 100.0 9.4E-64 2E-68 385.0 20.4 233 2-234 4-241 (241)
3 PTZ00246 proteasome subunit al 100.0 3.8E-62 8.1E-67 409.3 30.2 234 2-235 1-242 (253)
4 PRK03996 proteasome subunit al 100.0 6.5E-62 1.4E-66 405.4 30.4 232 3-234 7-239 (241)
5 TIGR03633 arc_protsome_A prote 100.0 3.4E-60 7.3E-65 391.1 28.3 223 4-226 1-224 (224)
6 cd03751 proteasome_alpha_type_ 100.0 5.2E-60 1.1E-64 386.2 27.0 211 3-213 1-212 (212)
7 cd03752 proteasome_alpha_type_ 100.0 5.4E-59 1.2E-63 381.1 27.3 210 4-213 1-213 (213)
8 KOG0183 20S proteasome, regula 100.0 6.5E-60 1.4E-64 368.0 18.8 231 3-235 1-234 (249)
9 cd03756 proteasome_alpha_arche 100.0 1.9E-58 4.1E-63 377.4 27.7 210 5-214 1-210 (211)
10 cd03755 proteasome_alpha_type_ 100.0 2.9E-58 6.4E-63 375.2 26.7 206 6-213 1-207 (207)
11 COG0638 PRE1 20S proteasome, a 100.0 8.6E-58 1.9E-62 378.2 28.9 230 4-235 1-233 (236)
12 cd03749 proteasome_alpha_type_ 100.0 6.5E-58 1.4E-62 374.0 27.3 207 6-214 1-211 (211)
13 cd03754 proteasome_alpha_type_ 100.0 9.3E-58 2E-62 374.0 26.7 209 5-213 1-215 (215)
14 cd03753 proteasome_alpha_type_ 100.0 2.4E-57 5.1E-62 371.5 26.6 208 6-213 1-213 (213)
15 cd01911 proteasome_alpha prote 100.0 5.3E-57 1.1E-61 368.5 26.1 208 6-213 1-209 (209)
16 KOG0178 20S proteasome, regula 100.0 1E-56 2.2E-61 349.2 22.7 233 2-234 1-240 (249)
17 KOG0181 20S proteasome, regula 100.0 5.4E-57 1.2E-61 346.9 19.7 233 1-234 1-233 (233)
18 KOG0184 20S proteasome, regula 100.0 1E-55 2.2E-60 346.2 21.8 228 4-231 6-235 (254)
19 KOG0863 20S proteasome, regula 100.0 2.2E-54 4.8E-59 340.3 23.0 231 1-233 1-235 (264)
20 KOG0182 20S proteasome, regula 100.0 7.3E-53 1.6E-57 327.9 24.4 232 3-234 6-242 (246)
21 TIGR03691 20S_bact_alpha prote 100.0 6.8E-47 1.5E-51 311.2 24.1 211 13-231 7-228 (228)
22 PTZ00488 Proteasome subunit be 100.0 4.5E-46 9.7E-51 309.8 25.4 202 29-235 36-239 (247)
23 TIGR03690 20S_bact_beta protea 100.0 9.9E-46 2.1E-50 303.7 25.1 203 31-235 1-215 (219)
24 cd03761 proteasome_beta_type_5 100.0 5.2E-45 1.1E-49 293.0 24.3 185 33-222 1-187 (188)
25 cd03758 proteasome_beta_type_2 100.0 5.1E-45 1.1E-49 294.2 24.0 187 33-222 2-191 (193)
26 cd03760 proteasome_beta_type_4 100.0 1.4E-44 3.1E-49 292.5 23.2 188 31-221 1-194 (197)
27 TIGR03634 arc_protsome_B prote 100.0 2.3E-44 5.1E-49 288.6 23.8 182 32-217 1-184 (185)
28 cd03759 proteasome_beta_type_3 100.0 3.5E-44 7.5E-49 289.8 23.5 183 31-217 2-188 (195)
29 cd03764 proteasome_beta_archea 100.0 9.5E-44 2.1E-48 285.8 24.4 186 33-223 1-188 (188)
30 cd03757 proteasome_beta_type_1 100.0 3.7E-43 8E-48 287.2 23.1 185 29-217 5-201 (212)
31 cd03763 proteasome_beta_type_7 100.0 5.9E-43 1.3E-47 281.3 23.6 186 33-224 1-188 (189)
32 cd03765 proteasome_beta_bacter 100.0 1.6E-42 3.5E-47 285.7 25.4 184 33-217 1-201 (236)
33 cd03762 proteasome_beta_type_6 100.0 1.7E-42 3.7E-47 278.5 23.7 180 33-217 1-183 (188)
34 PF00227 Proteasome: Proteasom 100.0 3.2E-42 6.9E-47 277.1 22.2 185 29-213 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 8.7E-42 1.9E-46 274.5 23.3 184 33-221 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 7.2E-41 1.6E-45 267.4 24.4 179 33-213 1-182 (182)
37 KOG0175 20S proteasome, regula 100.0 5.2E-39 1.1E-43 257.1 16.8 197 30-231 69-267 (285)
38 KOG0177 20S proteasome, regula 100.0 2.5E-36 5.5E-41 231.9 17.3 188 33-223 2-192 (200)
39 KOG0173 20S proteasome, regula 100.0 1.5E-36 3.2E-41 242.4 16.6 190 23-217 28-219 (271)
40 KOG0179 20S proteasome, regula 100.0 4.1E-35 8.8E-40 228.4 18.6 186 29-218 26-225 (235)
41 KOG0174 20S proteasome, regula 100.0 1.3E-35 2.8E-40 228.6 14.8 198 29-231 16-217 (224)
42 KOG0185 20S proteasome, regula 100.0 1.2E-33 2.7E-38 223.6 14.3 215 10-227 13-240 (256)
43 PRK05456 ATP-dependent proteas 100.0 1.8E-31 3.9E-36 210.0 18.2 165 32-212 1-171 (172)
44 cd01901 Ntn_hydrolase The Ntn 100.0 1.2E-29 2.6E-34 197.5 22.5 161 33-196 1-163 (164)
45 cd01913 protease_HslV Protease 100.0 4E-30 8.6E-35 201.0 18.2 163 33-212 1-170 (171)
46 KOG0180 20S proteasome, regula 100.0 8.7E-30 1.9E-34 193.0 17.1 184 30-217 6-193 (204)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.9E-29 4.1E-34 197.2 18.1 163 33-212 1-170 (171)
48 COG3484 Predicted proteasome-t 99.6 1.6E-14 3.4E-19 113.1 11.2 184 33-217 2-202 (255)
49 PF10584 Proteasome_A_N: Prote 99.6 7E-16 1.5E-20 78.9 1.9 23 6-28 1-23 (23)
50 COG5405 HslV ATP-dependent pro 99.3 1.5E-11 3.1E-16 93.3 10.5 167 31-213 3-175 (178)
51 PF09894 DUF2121: Uncharacteri 97.2 0.057 1.2E-06 42.9 15.7 151 33-216 2-180 (194)
52 COG4079 Uncharacterized protei 96.7 0.077 1.7E-06 43.6 13.1 167 33-231 2-197 (293)
53 KOG3361 Iron binding protein i 84.4 2.1 4.5E-05 32.0 4.3 45 147-191 71-115 (157)
54 smart00481 POLIIIAc DNA polyme 62.0 9.9 0.00021 24.4 2.8 33 10-42 5-38 (67)
55 PF11211 DUF2997: Protein of u 52.4 30 0.00065 21.1 3.6 33 146-178 2-34 (48)
56 PF07499 RuvA_C: RuvA, C-termi 51.5 12 0.00027 22.5 1.8 33 162-194 12-45 (47)
57 PRK07328 histidinol-phosphatas 41.0 29 0.00063 29.1 3.1 39 1-41 1-40 (269)
58 PF13778 DUF4174: Domain of un 40.8 63 0.0014 23.6 4.5 32 204-235 76-112 (118)
59 COG0279 GmhA Phosphoheptose is 37.8 33 0.00072 27.0 2.6 36 13-48 116-152 (176)
60 KOG3652 Uncharacterized conser 37.0 68 0.0015 30.8 4.9 114 76-199 192-305 (1215)
61 PF02811 PHP: PHP domain; Int 35.7 33 0.00072 26.0 2.5 32 10-41 6-38 (175)
62 COG4831 Roadblock/LC7 domain [ 33.8 1.6E+02 0.0035 20.8 5.2 32 203-234 75-106 (109)
63 PF08140 Cuticle_1: Crustacean 33.6 75 0.0016 18.6 3.0 30 11-47 4-33 (40)
64 PRK00912 ribonuclease P protei 31.9 48 0.001 27.2 3.0 39 1-42 1-39 (237)
65 COG4728 Uncharacterized protei 29.9 56 0.0012 23.4 2.5 33 63-95 8-40 (124)
66 PF09702 Cas_Csa5: CRISPR-asso 29.3 75 0.0016 22.8 3.1 57 179-235 15-86 (105)
67 PRK06361 hypothetical protein; 28.9 58 0.0013 26.1 2.9 33 10-43 2-34 (212)
68 PRK02260 S-ribosylhomocysteina 28.8 2.6E+02 0.0056 21.8 6.2 59 143-201 71-150 (158)
69 PF14804 Jag_N: Jag N-terminus 28.7 83 0.0018 19.5 2.9 28 182-215 5-32 (52)
70 PRK09248 putative hydrolase; V 28.6 56 0.0012 27.0 2.8 38 5-42 4-42 (246)
71 PRK08123 histidinol-phosphatas 28.1 73 0.0016 26.8 3.5 39 1-41 1-41 (270)
72 COG1387 HIS2 Histidinol phosph 27.2 56 0.0012 27.0 2.6 30 10-40 8-37 (237)
73 PF01592 NifU_N: NifU-like N t 27.0 2.1E+02 0.0045 21.0 5.4 54 147-200 42-96 (126)
74 PRK09732 hypothetical protein; 26.8 1.4E+02 0.0031 22.4 4.5 35 180-217 5-39 (134)
75 PF07676 PD40: WD40-like Beta 26.2 29 0.00062 19.4 0.5 12 8-19 11-22 (39)
76 PF10055 DUF2292: Uncharacteri 25.1 18 0.0004 20.9 -0.5 18 10-27 18-35 (38)
77 PRK14065 exodeoxyribonuclease 25.0 1.9E+02 0.0041 20.0 4.3 29 168-196 32-60 (86)
78 cd01784 rasfadin_RA Ubiquitin- 24.4 1.4E+02 0.003 20.7 3.6 45 179-227 20-64 (87)
79 PF14769 CLAMP: Flagellar C1a 24.1 2.6E+02 0.0056 19.6 5.8 52 169-233 23-75 (101)
80 PRK11325 scaffold protein; Pro 23.7 2.5E+02 0.0055 20.6 5.3 50 148-197 46-95 (127)
81 PF11773 PulG: Type II secreto 23.4 1.3E+02 0.0029 20.6 3.4 40 181-221 33-72 (82)
82 smart00413 ETS erythroblast tr 23.3 1.3E+02 0.0027 21.0 3.3 24 209-232 20-44 (87)
83 COG1754 Uncharacterized C-term 23.1 57 0.0012 27.9 1.8 55 137-194 78-136 (298)
84 COG3193 GlcG Uncharacterized p 23.1 2.5E+02 0.0054 21.4 5.1 36 179-217 5-40 (141)
85 COG0822 IscU NifU homolog invo 22.8 3.2E+02 0.007 20.9 5.9 49 145-194 44-93 (150)
86 COG3642 Mn2+-dependent serine/ 22.7 4E+02 0.0087 21.6 6.5 69 143-216 63-136 (204)
87 PF10632 He_PIG_assoc: He_PIG 22.4 1.1E+02 0.0023 16.6 2.2 22 133-154 5-26 (29)
88 cd06404 PB1_aPKC PB1 domain is 22.2 2.7E+02 0.0059 19.1 6.6 49 179-232 17-66 (83)
89 cd01782 AF6_RA_repeat1 Ubiquit 22.2 2.4E+02 0.0053 20.5 4.6 46 179-226 43-89 (112)
90 PF09695 YtfJ_HI0045: Bacteria 22.1 1.3E+02 0.0029 23.3 3.6 26 209-234 127-157 (160)
91 TIGR01856 hisJ_fam histidinol 21.8 82 0.0018 26.1 2.6 33 10-42 6-38 (253)
92 PF12566 DUF3748: Protein of u 21.7 38 0.00082 24.8 0.5 12 9-20 71-82 (122)
93 PF06057 VirJ: Bacterial virul 21.6 1.4E+02 0.003 24.0 3.7 34 104-141 44-77 (192)
94 PF03928 DUF336: Domain of unk 21.5 1.1E+02 0.0023 22.6 3.0 35 180-217 1-35 (132)
95 PF02609 Exonuc_VII_S: Exonucl 21.4 2.1E+02 0.0045 17.5 3.9 28 170-197 8-35 (53)
96 PRK08868 flagellar protein Fla 21.3 3.8E+02 0.0083 20.5 6.5 50 185-234 74-130 (144)
97 PF00178 Ets: Ets-domain; Int 20.9 1.9E+02 0.0042 19.8 3.9 23 210-232 21-44 (85)
98 PF07661 MORN_2: MORN repeat v 20.4 41 0.00089 16.0 0.3 13 10-22 5-17 (22)
99 PF03646 FlaG: FlaG protein; 20.2 2.1E+02 0.0046 20.1 4.2 31 204-234 64-96 (107)
100 PF01886 DUF61: Protein of unk 20.2 1.6E+02 0.0034 22.2 3.5 25 211-235 33-57 (132)
101 cd05781 DNA_polB_B3_exo DEDDy 20.0 61 0.0013 25.7 1.4 33 60-92 54-86 (188)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-64 Score=412.86 Aligned_cols=226 Identities=77% Similarity=1.203 Sum_probs=220.4
Q ss_pred CCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCC
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGK 165 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~ 165 (235)
+.+.++.+++.|++.++++++++.+++++++.+|.|+++++.|||+|++|++|||++||+||.+||.|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHH
Q 026627 166 NVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYL 231 (235)
Q Consensus 166 ~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l 231 (235)
|++.++++|++.|+++|+++||++++++||+.+.++++++.+++|++++++++++.++++||++++
T Consensus 161 g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 161 NYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 999999999999999999999999999999999988889999999999987679999999999986
No 2
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-64 Score=385.01 Aligned_cols=233 Identities=36% Similarity=0.653 Sum_probs=224.3
Q ss_pred CCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChh
Q 026627 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (235)
Q Consensus 2 ~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (235)
-++.||+.+++|||||||||||||++|++.|+|.|||+.++|||||+++|.+++|+.++..+||++|++||+|++||+.+
T Consensus 4 trseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred cHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeecccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC-----cccceeEEEEEEEeCCCCeEEEECCCCcEE
Q 026627 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG-----VRPFGVSLLVAGYDDKGPQLYQVDPSGSYF 156 (235)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~-----~rP~~~~~il~G~d~~gp~Ly~id~~G~~~ 156 (235)
|++.+++..|.++++|++.||++++++.+.+.+|.+...|..... .|||||++|+||+|++||+||+.||+|+++
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~ 163 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFI 163 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceE
Confidence 999999999999999999999999999999999999987765522 599999999999999999999999999999
Q ss_pred eeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 157 SWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 157 ~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
++++-|||+|++-+...|++.|+++|+++||+.+++..|+.+++..++..++++.++++.+.|++++++|+++++.++
T Consensus 164 ~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~~ 241 (241)
T KOG0176|consen 164 RYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKRL 241 (241)
T ss_pred EecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998899999999999999889999999999998654
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.8e-62 Score=409.34 Aligned_cols=234 Identities=36% Similarity=0.626 Sum_probs=221.9
Q ss_pred CCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCcccc-CCceeEEEecCcEEEEEecCh
Q 026627 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 2 ~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|.++||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|+|.+++++.. ++.+||++|++|++|+++|..
T Consensus 1 ~~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~ 80 (253)
T PTZ00246 1 MSRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLT 80 (253)
T ss_pred CCCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcH
Confidence 4679999999999999999999999999999999999999999999999998876554 468999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeee
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK 159 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~ 159 (235)
+|++.+.+.+|.+++.|++.++.+++++.+++.++..+|.|+++++.|||+|++|++|||+ .||+||.+||.|++.+++
T Consensus 81 ~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~ 160 (253)
T PTZ00246 81 ADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWK 160 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecce
Confidence 9999999999999999999999999999999999999999999999999999999999995 789999999999999999
Q ss_pred EEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCC-----cEEEcCHHHHHHHHHH
Q 026627 160 ASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK-----EFRVLTPNEIRDYLAE 233 (235)
Q Consensus 160 ~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~-----~~~~l~~~ei~~~l~~ 233 (235)
++|+|.++++++++|++.|+++|+++||++++++||+.+..++. ++..++|+++++++ .|++|+++||+++|..
T Consensus 161 ~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 161 ATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred EEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874 88999999999863 3899999999999987
Q ss_pred cC
Q 026627 234 VE 235 (235)
Q Consensus 234 ~~ 235 (235)
++
T Consensus 241 ~~ 242 (253)
T PTZ00246 241 VT 242 (253)
T ss_pred Hh
Confidence 63
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=6.5e-62 Score=405.39 Aligned_cols=232 Identities=41% Similarity=0.711 Sum_probs=223.9
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
.++||+++|+|||||||+|+|||.||+++|+|+|||+++||||||+|++.+++++..++.+||++|++|++|++||..+|
T Consensus 7 ~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (241)
T PRK03996 7 QMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVAD 86 (241)
T ss_pred ccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHH
Confidence 57999999999999999999999999999999999999999999999999988877789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEe
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a 162 (235)
++.+.+.++.+++.|++.++++++++.++++++..+|.|+++++.|||+|++||||+|++||+||.+||.|++.+++++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a 166 (241)
T PRK03996 87 ARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATA 166 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred eCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC-cEEEcCHHHHHHHHHHc
Q 026627 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK-EFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 163 ~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~-~~~~l~~~ei~~~l~~~ 234 (235)
+|.+++.++++|++.|+++|+++||++++++||+.+.+++.++..++|+++++++ +++.++++||+++++++
T Consensus 167 ~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 167 IGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876789999999999985 59999999999999875
No 5
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.4e-60 Score=391.11 Aligned_cols=223 Identities=41% Similarity=0.703 Sum_probs=213.6
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhH
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDF 83 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (235)
.+||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|+++++|++||..+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 48999999999999999999999999999999999999999999999998887777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEee
Q 026627 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAM 163 (235)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~ 163 (235)
+.+.+.++.++..|++.++++++++.+++++++.+|.+++.++.|||+|++||||+|+.+|+||.+||.|++.+++++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~ 160 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAI 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEE
Confidence 99999999999999999999999999999999999999999889999999999999998999999999999999999999
Q ss_pred CCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC-cEEEcCHHH
Q 026627 164 GKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK-EFRVLTPNE 226 (235)
Q Consensus 164 G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~-~~~~l~~~e 226 (235)
|.++.+++++|++.|+++|+++||++++++||+.+.++..++..++|++|++++ +|++++++|
T Consensus 161 G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 161 GAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 999999999999999999999999999999999988833689999999999975 499999875
No 6
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-60 Score=386.24 Aligned_cols=211 Identities=36% Similarity=0.572 Sum_probs=203.4
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
+++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+++++..++.+||++|++|++|+++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 1 GTGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 37999999999999999999999999999999999999999999999999888777778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEe
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a 162 (235)
++.+.+.++.+++.|++.++.+++++.+++++++.+|.|+++++.|||+|++|++|+|++||+||.+||.|++.+++++|
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEE
Confidence 99999999999999999999999999999999999999999989999999999999998899999999999999999999
Q ss_pred eCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCC-CCCCcEEEEEE
Q 026627 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (235)
Q Consensus 163 ~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i 213 (235)
+|+++..++++||+.|+++||++||+++++++|+.+++.. ....++||.++
T Consensus 161 ~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 161 IGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999999999999999999854 68899999874
No 7
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-59 Score=381.11 Aligned_cols=210 Identities=40% Similarity=0.691 Sum_probs=201.7
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCcccc-CCceeEEEecCcEEEEEecChhh
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
++||+++|+|||||||+|+|||.||+++|+|+||++++||||||+|+|.+++++.. ++.+||++|++|++|++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 48999999999999999999999999999999999999999999999998876554 49999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEE
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~ 161 (235)
++.+.+.+|.+++.|+++++++++++.++++++..+|.|+++++.|||+|++|++|||+ .||+||.+||.|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred eeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCC-CCCCcEEEEEE
Q 026627 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i 213 (235)
|+|+++..++++||+.|+++|+++||++++++||+.+.+|+ ..+.++||.++
T Consensus 161 a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999987 58899999875
No 8
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-60 Score=367.96 Aligned_cols=231 Identities=38% Similarity=0.662 Sum_probs=221.5
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
.++||+-+|+|||||+|+|||||++|+.+|+|.||++++|+|||+.+++...+|...+...||..+++|++++++|+.+|
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 36899999999999999999999999999999999999999999999998889998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCC-CeEEEECCCCcEEeeeEE
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-p~Ly~id~~G~~~~~~~~ 161 (235)
++.+++.+|.+|+.|+++.+.+++++.++++++.+.|.||+++|.||||++++|+|+|++| |+||.+||+|.+.+|.+.
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~ 160 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKAN 160 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999966 999999999999999999
Q ss_pred eeCCCchHHHHHHHHhccCC--CCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 162 AMGKNVSNAKTFLEKRYVEE--MELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~~--~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
|+|.+++.+..+||+.|.++ .+..++++|++++|-++... .+.++|++++++.+.++.|+.++|+.++..||
T Consensus 161 aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie 234 (249)
T KOG0183|consen 161 AIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKDLKMLESEEIDDIVKEIE 234 (249)
T ss_pred ccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCceeecCHHHHHHHHHHHH
Confidence 99999999999999999876 78899999999999998764 78899999999987799999999999988764
No 9
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-58 Score=377.42 Aligned_cols=210 Identities=42% Similarity=0.714 Sum_probs=204.5
Q ss_pred CCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHH
Q 026627 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFR 84 (235)
Q Consensus 5 ~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 84 (235)
+||+++|+|||||||+|+|||.||+++|+|+||++++||||||+|++.+++++..++.+||++|+++++|++||..+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999988777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeC
Q 026627 85 VLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMG 164 (235)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G 164 (235)
.+.+.++.+++.|+++++++++++.++++++..++.+++.++.|||++++||+|||+.||+||.+||.|++.+++++++|
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G 160 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIG 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEEC
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 026627 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIG 214 (235)
Q Consensus 165 ~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~ 214 (235)
++++.++++|++.|+++|+++||++++++||+.+.+++.++.+++|++++
T Consensus 161 ~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 161 SGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 99999999999999999999999999999999999888899999999986
No 10
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-58 Score=375.19 Aligned_cols=206 Identities=41% Similarity=0.697 Sum_probs=199.0
Q ss_pred CCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|++.+..++.++..+||++|++|++|++||..+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeC
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMG 164 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G 164 (235)
+.+.++.+++.|++.++++++++.+++++++++|.|+++++.|||+|++|++|||+ .||+||.+||.|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G 160 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG 160 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999996 58999999999999999999999
Q ss_pred CCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 026627 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (235)
Q Consensus 165 ~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i 213 (235)
++++.++++|++.|+++|+++||++++++||+.+.+ .++.++||+++
T Consensus 161 ~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 161 RNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 999999999999999999999999999999999886 78899999875
No 11
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-58 Score=378.16 Aligned_cols=230 Identities=43% Similarity=0.703 Sum_probs=219.1
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcCC-CcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChh
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSG-QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGP 81 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~G-~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (235)
.+||+.+++||||||++|+|||.+++.+| +|+||++++||||||+|+|.+++ ++..++.+|||+|+|||+|++||..+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999976 99999999999999999999986 55566799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEE
Q 026627 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~ 161 (235)
|++.+.++++.+++.|++.++++++++.+++++++++|.++++ .|||++++|+||+|+++|+||++||+|++.++++.
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEE
Confidence 9999999999999999999999999999999999999999987 79999999999999978999999999999999999
Q ss_pred eeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
|+|+|++.++++||+.|+++|+.|||++++++||+.+.+||. ++.+++|+++++++++++++++++..++++++
T Consensus 159 a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T COG0638 159 AIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLS 233 (236)
T ss_pred EEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999986 88899999999976799999999999988753
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-58 Score=374.04 Aligned_cols=207 Identities=39% Similarity=0.697 Sum_probs=198.9
Q ss_pred CCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||..+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999877753 46699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCC
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGK 165 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~ 165 (235)
+.++++.+++.|+++++++++++.+++.++..+|.++++.+.|||+|++||+|||+.||+||.+||+|++.+++++|+|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~ 158 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGA 158 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECC
Confidence 99999999999999999999999999999999999999988999999999999998899999999999999999999999
Q ss_pred CchHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhccCC--CCCCcEEEEEEe
Q 026627 166 NVSNAKTFLEKRYV--EEMELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIG 214 (235)
Q Consensus 166 ~s~~~~~~L~~~~~--~~~s~~ea~~l~~~~l~~~~~~~--~~~~~iei~~i~ 214 (235)
+++.++++||+.|+ ++|+++|++++++++|+.+++++ +++.+|||++++
T Consensus 159 g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 159 RSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999998 59999999999999999999975 789999999984
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.3e-58 Score=374.00 Aligned_cols=209 Identities=35% Similarity=0.610 Sum_probs=200.5
Q ss_pred CCCCcccccCCCCccchhhcHHHhhcC-CCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhH
Q 026627 5 QYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDF 83 (235)
Q Consensus 5 ~yd~~~~~fsp~Grl~Q~eya~ka~~~-G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (235)
+||+++|+|||||||+|+|||.||+++ |+|+||++++||||||+|+|.+++++..+..+||++|+++++|++||..+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999985 7899999999999999999998877766788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEe
Q 026627 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASA 162 (235)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a 162 (235)
+.+.+++|.++..|+++++++++++.+++.++.++|.|+++.+.|||++++|+||+|+ +||+||.+||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 9999999999999999999999999999999999999999998999999999999996 789999999999999999999
Q ss_pred eCCCchHHHHHHHHhccCC--C--CHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 026627 163 MGKNVSNAKTFLEKRYVEE--M--ELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (235)
Q Consensus 163 ~G~~s~~~~~~L~~~~~~~--~--s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i 213 (235)
+|++++.++++||+.|+++ | +++||++++++||+.+.++++.+..+||+|+
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999985 7 9999999999999999999988999999885
No 14
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-57 Score=371.47 Aligned_cols=208 Identities=37% Similarity=0.650 Sum_probs=199.7
Q ss_pred CCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
||+++|+|||||||+|+|||.+|+++|+|+||++++||||||+|++.+++++..++.+||++|++|++|+++|..+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999887777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcC-----CcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSG-----GVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~-----~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+.+.++.+++.|+++++++++++.+++++++.+|.|++.. ..|||+|++|++|+|+.||+||.+||.|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 9999999999999999999999999999999999998753 36999999999999999999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i 213 (235)
+|+|++++.++++|++.|+++|+++||++++++||+.+.+++++++++||+++
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999999999999998887789999999975
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=5.3e-57 Score=368.45 Aligned_cols=208 Identities=53% Similarity=0.861 Sum_probs=201.4
Q ss_pred CCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
||+++|+|||||||+|+|||+|++++|+|+||++++||||+|+|++.+.+++..++.+||++|+++++++++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999887776789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCC-CCeEEEECCCCcEEeeeEEeeC
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMG 164 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-gp~Ly~id~~G~~~~~~~~a~G 164 (235)
+.+.++..+..|+..++++++++.++++++++++.|+++.+.|||+|++||+|+|++ ||+||.+||.|++.+++++++|
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G 160 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG 160 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence 999999999999999999999999999999999999999889999999999999975 8999999999999999999999
Q ss_pred CCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEE
Q 026627 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGII 213 (235)
Q Consensus 165 ~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i 213 (235)
.++..++++|++.|+++|+.+||++++++||+.+.++|.++..++|+++
T Consensus 161 ~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 161 KGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999888889999875
No 16
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-56 Score=349.24 Aligned_cols=233 Identities=38% Similarity=0.603 Sum_probs=221.6
Q ss_pred CCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCcccc-CCceeEEEecCcEEEEEecCh
Q 026627 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 2 ~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|..+||...|+|||||||+|||||++++.+.+|+||+..+||||||+++|.+++|+.. .+.+||++|+|||+|+++|+.
T Consensus 1 msr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt 80 (249)
T KOG0178|consen 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLT 80 (249)
T ss_pred CCcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccc
Confidence 5678999999999999999999999999999999999999999999999999988764 589999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeee
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK 159 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~ 159 (235)
+|+..+.+.+|..+++|.++|++++|++.|++.+++..|.|||++|.|||||++|.+|||+ .|.+||+.||+|++..|+
T Consensus 81 ~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWk 160 (249)
T KOG0178|consen 81 SDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWK 160 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998 679999999999999999
Q ss_pred EEeeCCCchHHHHHHHHhccCCC-CHHHHHHHHHHHHHhhccCC-CCCCcEEEEEEecCC---cEEEcCHHHHHHHHHHc
Q 026627 160 ASAMGKNVSNAKTFLEKRYVEEM-ELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKK---EFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 160 ~~a~G~~s~~~~~~L~~~~~~~~-s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~---~~~~l~~~ei~~~l~~~ 234 (235)
+.++|.++..++..|+..|+++. +++||..++++.|..+.++. +...++|+..++++. .++.++++||.++|++.
T Consensus 161 a~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~ 240 (249)
T KOG0178|consen 161 ATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY 240 (249)
T ss_pred eeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence 99999999999999999998765 59999999999999999876 689999999999873 47899999999999875
No 17
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-57 Score=346.87 Aligned_cols=233 Identities=76% Similarity=1.131 Sum_probs=227.6
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|+..+|.+++|+|||+|+|.|+|||..|+.+|.+.||++-.||||||++++..+.|.......|++.|.++|+|..||..
T Consensus 1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+|++.+++..|+.++.|...|++++++..++..++..+|.|||++|.||||+++++||||+++|.||.+||+|++..|++
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka 160 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA 160 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
+|+|.+...++++||++|+++|.+++++..++..|++..+-....+++||.++..+ +|++|+++||+++|+.+
T Consensus 161 tA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~-~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 161 TAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGEN-GFRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCC-ceeecCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988899999999999965 69999999999999864
No 18
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-55 Score=346.18 Aligned_cols=228 Identities=37% Similarity=0.602 Sum_probs=214.6
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhH
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDF 83 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (235)
++||++.++||||||+||+|||+||+++|+|+|||+|+||||+++|+..+|+|+.++..+||+.|++||+|+++|+.+|.
T Consensus 6 tGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg 85 (254)
T KOG0184|consen 6 TGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDG 85 (254)
T ss_pred ccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEee
Q 026627 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAM 163 (235)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~ 163 (235)
+.+...+|.++.+|+.+|+.++|...+++.++.+.|.||.++..||||+++++++||.+||+||+++|+|..+.++++|+
T Consensus 86 ~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aai 165 (254)
T KOG0184|consen 86 RHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAI 165 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCC-CCCCcEEEEEEecC-CcEEEcCHHHHHHHH
Q 026627 164 GKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEK-KEFRVLTPNEIRDYL 231 (235)
Q Consensus 164 G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i~~~-~~~~~l~~~ei~~~l 231 (235)
|.|.+.+++.||+.--++|+.+|+++.+.+.|+.+.+.. .....+|+.|+... ++.++.-|+|+-+..
T Consensus 166 GKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea 235 (254)
T KOG0184|consen 166 GKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEA 235 (254)
T ss_pred cchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHH
Confidence 999999999999999999999999999999999877654 36678999999975 456666666765543
No 19
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-54 Score=340.32 Aligned_cols=231 Identities=35% Similarity=0.608 Sum_probs=220.8
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
||+.+||.++|+|||+|||+|||||++|++.|++.||+|.++..||++-+|..+.| ++.++||++||+|+++.++|++
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt 78 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL--SSHQKKIFKIDDHIGISIAGLT 78 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH--HHhhheeEecccccceEEeccC
Confidence 99999999999999999999999999999999999999999999999999887766 3578999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+|++.+.+++|.+|..+++.|++++++..|+..+++..|..||+.+.|||||.++++|||+.||+||.++|+|++.++++
T Consensus 79 ~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g 158 (264)
T KOG0863|consen 79 ADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKG 158 (264)
T ss_pred cchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhccC--CCCCCcEEEEEEecCCcEEEcCHHHHHHHHHH
Q 026627 161 SAMGKNVSNAKTFLEKRYV--EEMELDDAVHTAILTLKEGFEG--QISEKNIEIGIIGEKKEFRVLTPNEIRDYLAE 233 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~--~~~s~~ea~~l~~~~l~~~~~~--~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~ 233 (235)
.+||+.|+.++++||+... ++++.||.+..++.||+.++.. ++.+.+++|+|+.++.+|+.++.+++.+++.-
T Consensus 159 ~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~ 235 (264)
T KOG0863|consen 159 MSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDL 235 (264)
T ss_pred eecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHH
Confidence 9999999999999999886 5899999999999999999874 36899999999999999999999999877653
No 20
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-53 Score=327.94 Aligned_cols=232 Identities=33% Similarity=0.621 Sum_probs=223.7
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcC-CCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~-G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (235)
..+||+++|+|||||||+|||||.||+++ |-|.||++++|++|+++.++.+.+|+++++..-+|+|..+|+|+++|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 46899999999999999999999999998 66999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeE
Q 026627 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~ 160 (235)
|++...+++|.++.++++.||.++|++.|++.++++.|.|+|+..+||+||.+++.|+|+ .||.+|.+||.|.+..+++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kA 165 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKA 165 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccccccee
Confidence 999999999999999999999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCC--CCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCc-EEEcCHHHHHHHHHHc
Q 026627 161 SAMGKNVSNAKTFLEKRYVEE--MELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE-FRVLTPNEIRDYLAEV 234 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~--~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~-~~~l~~~ei~~~l~~~ 234 (235)
++.|.....+..+||++++++ ++.+|++++++.||..++.-|.....+||.+++++.+ |+.|+.+||++.|.+|
T Consensus 166 taaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~I 242 (246)
T KOG0182|consen 166 TAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQAI 242 (246)
T ss_pred eecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHHh
Confidence 999999999999999999987 6799999999999999999889999999999999854 9999999999999876
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=6.8e-47 Score=311.21 Aligned_cols=211 Identities=22% Similarity=0.357 Sum_probs=190.8
Q ss_pred cCCCCccch-hhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHHHHHHHH
Q 026627 13 FSPSGKLVQ-IEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSR 91 (235)
Q Consensus 13 fsp~Grl~Q-~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~ 91 (235)
.+|+.-+-| -|||+||+++|+|+|||+++||||||+|++. ++.+|||+|+|||+|+++|..+|++.+++.++
T Consensus 7 ~~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r 79 (228)
T TIGR03691 7 VSPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGI 79 (228)
T ss_pred cCHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHH
Confidence 478877754 4999999999999999999999999999973 46799999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC--CCCeEEEECCCCcEEeee-EEeeCCCc
Q 026627 92 KQAEQYHRLYK-EPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSWK-ASAMGKNV 167 (235)
Q Consensus 92 ~~~~~~~~~~~-~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~gp~Ly~id~~G~~~~~~-~~a~G~~s 167 (235)
.+++.|++.++ .+++++.+++.+++....++ +++.|||+|++|++|||+ .||+||.+||+|++.+++ ++|+|+++
T Consensus 80 ~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs 158 (228)
T TIGR03691 80 RYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTT 158 (228)
T ss_pred HHHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCCh
Confidence 99999999998 78999999988877776655 455799999999999984 689999999999999976 89999999
Q ss_pred hHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcc--CC-CCCCcEEEEEEecCC---cEEEcCHHHHHHHH
Q 026627 168 SNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE--GQ-ISEKNIEIGIIGEKK---EFRVLTPNEIRDYL 231 (235)
Q Consensus 168 ~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~--~~-~~~~~iei~~i~~~~---~~~~l~~~ei~~~l 231 (235)
+.++++||+.|+++||++||++++++||+.+.+ ++ +++.++||.++++++ +|++|+++||+.+|
T Consensus 159 ~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 159 EPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999999999999999999999999999864 43 689999999999743 59999999999864
No 22
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.5e-46 Score=309.79 Aligned_cols=202 Identities=18% Similarity=0.275 Sum_probs=189.3
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
+.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.+.+|.+++.|++++++++++
T Consensus 36 ~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv 115 (247)
T PTZ00488 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISV 115 (247)
T ss_pred cCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 47899999999999999999999885 78888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHH
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDA 187 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea 187 (235)
+.+++++++++|.++ ..|+.+++|+||||++||+||.+||.|++.+++++|+|+|+.+++++|++.|+++|+.+||
T Consensus 116 ~~la~~ls~~l~~~R----~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa 191 (247)
T PTZ00488 116 AAASKILANIVWNYK----GMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA 191 (247)
T ss_pred HHHHHHHHHHHHhcC----CCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence 999999999998773 2245556899999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCC-CCCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 188 VHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 188 ~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
++++++||+.+.+|| .++.+++|++|+++ ++++++++||+++++.++
T Consensus 192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~-g~~~l~~~ei~~~l~~~~ 239 (247)
T PTZ00488 192 QDLGRRAIYHATFRDAYSGGAINLYHMQKD-GWKKISADDCFDLHQKYA 239 (247)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCC-ccEECCHHHHHHHHHHHh
Confidence 999999999999998 59999999999987 499999999999998764
No 23
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=9.9e-46 Score=303.69 Aligned_cols=203 Identities=20% Similarity=0.290 Sum_probs=187.6
Q ss_pred CCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026627 31 SGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQ 109 (235)
Q Consensus 31 ~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 109 (235)
+|+|+|||+++||||||+|+|.++ +++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999996 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccceeEEEEEEEeC--CCCeEEEECCCCc-EEeeeEEeeCCCchHHHHHHHHhccCCCCHHH
Q 026627 110 LVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGS-YFSWKASAMGKNVSNAKTFLEKRYVEEMELDD 186 (235)
Q Consensus 110 l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~gp~Ly~id~~G~-~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~e 186 (235)
+++++++++|.+++ ..+|||++++||||||+ ++|+||.+||.|+ +..++++|+|+|++.++++|++.|+++||.+|
T Consensus 81 la~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhhh-hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 99999999988774 34899999999999995 5799999999995 66779999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCC-CCCc-------EEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 187 AVHTAILTLKEGFEGQI-SEKN-------IEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~~-~~~~-------iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
|++++.+||+.+.++|. +++. ++|++++++ ++++++++||+.++.+++
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~-g~~~l~~~ei~~~~~~~~ 215 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITAD-GARRVPESELEELARAIV 215 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccC-ceEEcCHHHHHHHHHHHH
Confidence 99999999999999885 4442 399999876 599999999999998763
No 24
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-45 Score=292.98 Aligned_cols=185 Identities=19% Similarity=0.327 Sum_probs=176.1
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ .++.+++.+|||+|++|++++++|..+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999997 677778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++++|.+++ .||++++|+||||++||+||.+||.|++.+++++|+|+|+++++++||+.|+++|+.+||++++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~ 156 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA 156 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999874 5899999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEc
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVL 222 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l 222 (235)
.+||+.+.+||. ++.+++|++|++++ ++++
T Consensus 157 ~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 157 RRAIYHATHRDAYSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred HHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence 999999999884 99999999999875 6665
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-45 Score=294.16 Aligned_cols=187 Identities=25% Similarity=0.322 Sum_probs=176.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+||++++||||||+|+|.++ .++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6899999999999999999985 668888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++++|.+++.. |||++++|++|||+ .||+||.+||.|++.+++++|+|+|+++++++||+.|+++||.+||+++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999887653 89999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCCcEEEc
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVL 222 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l 222 (235)
+++||+.+.+||. ++.+++|++|+++| ++++
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence 9999999999884 89999999999875 6654
No 26
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-44 Score=292.50 Aligned_cols=188 Identities=19% Similarity=0.210 Sum_probs=175.8
Q ss_pred CCCcEEEEEeCCEEEEEEeecCC-CCccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHH-HHHHHhCCCCCHH
Q 026627 31 SGQTSLGIKASNGVVIATEKKLP-SILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAE-QYHRLYKEPIPVT 108 (235)
Q Consensus 31 ~G~tivgi~~~dgvvla~d~~~~-~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 108 (235)
+|+|+|||+++||||||+|+|.+ ++++.+++.+|||+|++|++++++|..+|++.+.+++|.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 58999999999999999999998 588888899999999999999999999999999999999987 4667889999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccC--CCCHH
Q 026627 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVE--EMELD 185 (235)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~--~~s~~ 185 (235)
.+++++++++ |+++++.|||+|++|+||||+ .||+||.+||.|++.+++++|+|+|+.+++++||+.|++ +||++
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999975 566667899999999999997 789999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhccCC-CCCCcEEEEEEecCCcEEE
Q 026627 186 DAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRV 221 (235)
Q Consensus 186 ea~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~~~~~ 221 (235)
||++++.+||+.+.+|| .++.+++|++|++++ +++
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEe
Confidence 99999999999999998 589999999999975 554
No 27
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.3e-44 Score=288.62 Aligned_cols=182 Identities=29% Similarity=0.477 Sum_probs=174.6
Q ss_pred CCcEEEEEeCCEEEEEEeecCC-CCccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026627 32 GQTSLGIKASNGVVIATEKKLP-SILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (235)
Q Consensus 32 G~tivgi~~~dgvvla~d~~~~-~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (235)
|+|+|||+++||||||+|+|.+ ++++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 7899999999999999999998 477888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 111 ~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
++++++.+|.+ ++|||+|++|+||+|++||+||.+||.|++.+++++++|.++++++++|++.|+++||++||+++
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999876 37999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCC-CCCCcEEEEEEecCC
Q 026627 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKK 217 (235)
Q Consensus 191 ~~~~l~~~~~~~-~~~~~iei~~i~~~~ 217 (235)
+++||+.+.+++ .++.+++|++++++|
T Consensus 157 ~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 157 AVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 999999999988 489999999999875
No 28
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-44 Score=289.79 Aligned_cols=183 Identities=19% Similarity=0.218 Sum_probs=171.3
Q ss_pred CCCcEEEEEeCCEEEEEEeecCCCCccc-cCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026627 31 SGQTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQ 109 (235)
Q Consensus 31 ~G~tivgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 109 (235)
+|+|+|||+++||||||+|++.+++++. .++.+||++|++|++++++|..+|++.+.+.++.+++.|+++++.+++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887655 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeee-EEeeCCCchHHHHHHHHhccCCCCHHHH
Q 026627 110 LVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK-ASAMGKNVSNAKTFLEKRYVEEMELDDA 187 (235)
Q Consensus 110 l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~-~~a~G~~s~~~~~~L~~~~~~~~s~~ea 187 (235)
+++++++.++.. + .+||+|++|+||||+ .||+||.+||.|++..+. ++|+|+|++.++++|++.|+++|+.+||
T Consensus 82 la~~l~~~ly~~--r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 82 FSSLISSLLYEK--R--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred HHHHHHHHHHHh--c--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 999999988653 2 579999999999996 569999999999998876 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCC-CCCCcEEEEEEecCC
Q 026627 188 VHTAILTLKEGFEGQ-ISEKNIEIGIIGEKK 217 (235)
Q Consensus 188 ~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~ 217 (235)
++++++||+.+.+|| .++.+++|++|++++
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence 999999999999998 489999999999875
No 29
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-44 Score=285.78 Aligned_cols=186 Identities=28% Similarity=0.462 Sum_probs=177.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+||++++||||||+|+|.++ +++.+++.+||++|++|++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999986 777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++.+|.++ +|||+|++|+||+|+++|+||.+||.|++.+++++|+|+|+++++++|++.|+++|+++||++++
T Consensus 81 ~~i~~~~~~~~----~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~ 156 (188)
T cd03764 81 TLLSNILNSSK----YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA 156 (188)
T ss_pred HHHHHHHHhcC----CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99999998863 79999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEcC
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLT 223 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~ 223 (235)
++||+.+.+||. ++.+++|+++++++ +++|.
T Consensus 157 ~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~~ 188 (188)
T cd03764 157 IRAIKSAIERDSASGDGIDVVVITKDG-YKELE 188 (188)
T ss_pred HHHHHHHHhhcCCCCCcEEEEEECCCC-eEeCC
Confidence 999999999984 89999999999875 88763
No 30
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-43 Score=287.19 Aligned_cols=185 Identities=22% Similarity=0.274 Sum_probs=173.6
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCCCc-cccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
+++|+|+|||+++||||||+|++.++++ +..++.+||++|++|++++++|..+|++.+.+.++.+++.|++.++.++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 4689999999999999999999999765 557799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhcc-------
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYV------- 179 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~------- 179 (235)
+.++++++..++..+ .+||++++|+||||+ .+|+||.+||.|++.+++++|+|+|+.+++++|++.|+
T Consensus 85 ~~la~~ls~~ly~~R----~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTILYSRR----FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHHHhhc----CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 999999999987542 479999999999996 46999999999999999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHhhccCC-CCCCcEEEEEEecCC
Q 026627 180 --EEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKK 217 (235)
Q Consensus 180 --~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~ 217 (235)
++||++||++++.+||+.+.+|| .++.+++|++|++++
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g 201 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG 201 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC
Confidence 89999999999999999999998 599999999999986
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-43 Score=281.35 Aligned_cols=186 Identities=22% Similarity=0.328 Sum_probs=174.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ .++..++.+|||+|+++++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999997 567778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++.+|.++ .||+|++|+||||++||+||.+||.|++.+++++|+|.++..++++|++.|+++||++||++++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999988663 3999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCH
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTP 224 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~ 224 (235)
++||+.+.+||. ++.+++|++|++++ ++...|
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~~ 188 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLRN 188 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCc-EEEecC
Confidence 999999999985 89999999999985 665543
No 32
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=285.65 Aligned_cols=184 Identities=15% Similarity=0.241 Sum_probs=169.4
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEec----CcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC-CCCH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLT----PNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE-PIPV 107 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 107 (235)
+-+|||+++||||||+|+|++++++..++.+|||+|+ +||+|++||..+|++.+.+++|.+++.|+++++. ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 3489999999999999999988876666899999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHH-HHhhcCC-----cccceeEEEEEEEeC-CCCeEEEECCCCcEEee----eEEeeCCCchHHHHHHHH
Q 026627 108 TQLVRETAAVMQ-EFTQSGG-----VRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSW----KASAMGKNVSNAKTFLEK 176 (235)
Q Consensus 108 ~~l~~~l~~~~~-~~~~~~~-----~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~----~~~a~G~~s~~~~~~L~~ 176 (235)
+.++++++++++ .+++..+ .|||+|++|+||||+ .||+||.+||+|++.++ +++|+|. +.+++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 999999999864 4555554 489999999999994 78999999999999998 5689996 7999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhccCC-CCCCcEEEEEEecCC
Q 026627 177 RYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKK 217 (235)
Q Consensus 177 ~~~~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~ 217 (235)
.|+++||++||++++++||+.++++| .++.+|+|++|+++|
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G 201 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS 201 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC
Confidence 99999999999999999999999998 589999999999985
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-42 Score=278.50 Aligned_cols=180 Identities=18% Similarity=0.251 Sum_probs=171.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999987 677778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++++|.++ |||++++||||+|+ +||+||.+||.|++.+++++++|+++++++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999998774 78999999999996 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
+++||+.+.+||. ++..++|++|++++
T Consensus 156 ~~~al~~~~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 156 VKNALSLAMSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred HHHHHHHHHHhccccCCCEEEEEECCCC
Confidence 9999999999985 89999999999875
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=3.2e-42 Score=277.07 Aligned_cols=185 Identities=41% Similarity=0.722 Sum_probs=174.7
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCC--CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPS--ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIP 106 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~--~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 106 (235)
+++|+|+||++++||||||+|++.+. .+..+++.+|||+|++|++++++|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 47899999999999999999999983 3444555799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCC-CeEEEECCCCcEEee-eEEeeCCCchHHHHHHHHhccCCCCH
Q 026627 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMEL 184 (235)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-p~Ly~id~~G~~~~~-~~~a~G~~s~~~~~~L~~~~~~~~s~ 184 (235)
++.+++.++.+++.++++.++||+++++|+||+|+++ |+||.+||.|++.++ +++|+|+|++.++++|++.|+++|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~ 160 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSL 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSH
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCH
Confidence 9999999999999999998899999999999999865 999999999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCC-CCCCcEEEEEE
Q 026627 185 DDAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (235)
Q Consensus 185 ~ea~~l~~~~l~~~~~~~-~~~~~iei~~i 213 (235)
+||++++++||+.+.++| .++.+++|++|
T Consensus 161 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 161 EEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999988 59999999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-42 Score=274.53 Aligned_cols=184 Identities=25% Similarity=0.385 Sum_probs=174.1
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccc-cCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+||++++||||||+|++.++++.. .++.+|||+|+++++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999986544 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++.+|.+++ |||++++|+||+|+ ++|+||.+||.|++.+++++++|.++++++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999988875 89999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCCcEEE
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRV 221 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~ 221 (235)
+.+||+.+.+++. ++.+++|+++++++ ++.
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~ 187 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKDG-VEE 187 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence 9999999999885 89999999999885 543
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=7.2e-41 Score=267.41 Aligned_cols=179 Identities=45% Similarity=0.734 Sum_probs=170.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccc-cCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+||++++||||||+|++.++.+.. .++.+|||+|+++++++++|..+|++.+.+.++.++..|++.++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999876544 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++++|.+++. .|||++++|+||+|+ .+|+||.+||.|++.+++++++|+++++++++|++.|+++||.+||+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 9999999999876 799999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEE
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGII 213 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i 213 (235)
+++||+.+.+++. ++..++|.++
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 9999999999985 8899999875
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-39 Score=257.06 Aligned_cols=197 Identities=19% Similarity=0.306 Sum_probs=188.7
Q ss_pred cCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026627 30 GSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVT 108 (235)
Q Consensus 30 ~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 108 (235)
.+|||++|++++.|||+|+|+|+++ .+|..+..+||.+|+++.+-.++|-++|++.+.+.+.++|..|++++++.|++.
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVs 148 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVS 148 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehH
Confidence 6999999999999999999999996 788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHH
Q 026627 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAV 188 (235)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~ 188 (235)
..++.++.+++.|+.. -+.+.++|+|||+.||.||.+|..|+...-+.+++|+|+.+++.+|++.|+++|+.+||.
T Consensus 149 aASKllsN~~y~YkGm----GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~ 224 (285)
T KOG0175|consen 149 AASKLLSNMVYQYKGM----GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAY 224 (285)
T ss_pred HHHHHHHHHHhhccCc----chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHH
Confidence 9999999999988744 378899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHH
Q 026627 189 HTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYL 231 (235)
Q Consensus 189 ~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l 231 (235)
.|+++|+.+|..||. +++-+.++.|+.+ +|.+++..++.++.
T Consensus 225 ~L~rrAI~hAThRDaySGG~vnlyHv~ed-GW~~v~~~Dv~~L~ 267 (285)
T KOG0175|consen 225 DLARRAIYHATHRDAYSGGVVNLYHVKED-GWVKVSNTDVSELH 267 (285)
T ss_pred HHHHHHHHHHHhcccccCceEEEEEECCc-cceecCCccHHHHH
Confidence 999999999999995 9999999999998 49999999998884
No 38
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-36 Score=231.85 Aligned_cols=188 Identities=24% Similarity=0.311 Sum_probs=176.5
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
.+++||++.|+|++|+|+.... -++..++.+|++.+++++.++++|..+|+..+.+++.+.++.|+.++|.++|++.++
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 3789999999999999998775 466788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++.+.+..+.++ .+||.|++++||+|+ .||.||++|..|+..+.++++.|.++.+..++|++.|+|+||.+||+.+
T Consensus 82 hFtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~l 159 (200)
T KOG0177|consen 82 HFTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDL 159 (200)
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHH
Confidence 9999999988876 689999999999998 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCC-CCCCcEEEEEEecCCcEEEcC
Q 026627 191 AILTLKEGFEGQ-ISEKNIEIGIIGEKKEFRVLT 223 (235)
Q Consensus 191 ~~~~l~~~~~~~-~~~~~iei~~i~~~~~~~~l~ 223 (235)
..+|+.++.+|- .+-++|.|.+|+|+| .+.++
T Consensus 160 mkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~ 192 (200)
T KOG0177|consen 160 MKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLD 192 (200)
T ss_pred HHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecc
Confidence 999999998886 488999999999985 66554
No 39
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=242.44 Aligned_cols=190 Identities=22% Similarity=0.364 Sum_probs=178.6
Q ss_pred hcHHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHh
Q 026627 23 EHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLY 101 (235)
Q Consensus 23 eya~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 101 (235)
+-+.++.+.|+|++|+.++||||+++|+|++. +++..++.+||+.|.++|+||.+|.++|...+.+.+..+...|.+.+
T Consensus 28 ~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t 107 (271)
T KOG0173|consen 28 LKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNT 107 (271)
T ss_pred CCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhcc
Confidence 34677888999999999999999999999996 67778899999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCC
Q 026627 102 KEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEE 181 (235)
Q Consensus 102 ~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~ 181 (235)
++.+.+-...+++.+.+..|.. ..++.+|++|+|+.|||||.+-|.|+....+|.++|+|+..+.++||.+|+++
T Consensus 108 ~R~~rVv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~d 182 (271)
T KOG0173|consen 108 GRKPRVVTALRMLKQHLFRYQG-----HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPD 182 (271)
T ss_pred CCCCceeeHHHHHHHHHHHhcC-----cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcc
Confidence 9999999999999998877753 48999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 182 MELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 182 ~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
|++|||.+|+.+|+...+..|+ ++.++++|+|++.+
T Consensus 183 lt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 183 LTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred cCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 9999999999999999999997 99999999999653
No 40
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=228.36 Aligned_cols=186 Identities=23% Similarity=0.317 Sum_probs=174.0
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
..+|+|+|||++.|++|+|+|+|.++. .+.++..+|||+++|+++++.+|..+|+..+...++.....|+..++..+++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 579999999999999999999999874 5778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCC-CeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhcc-------
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYV------- 179 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~------- 179 (235)
..+|++|+..+|..+ +.||.+..+++|+|++| +.+|+.||-|++.+..+.|-|+++..++|+|++...
T Consensus 106 ~s~A~lls~~LY~kR----FFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTILYSKR----FFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHHhhcc----cccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 999999999998665 78999999999999955 999999999999999999999999999999998653
Q ss_pred ----CCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCc
Q 026627 180 ----EEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKE 218 (235)
Q Consensus 180 ----~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~ 218 (235)
..+++|+|++++.+++..|.+|++ .+..++|+++++++.
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV 225 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGV 225 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCE
Confidence 358999999999999999999997 899999999999863
No 41
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=228.64 Aligned_cols=198 Identities=20% Similarity=0.301 Sum_probs=183.0
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
+..|+|++|+++++||||++|+|++. .++.++-.+|+.+|.|+|+||-||.++|.|.+.+.++.++..|....+.++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 57999999999999999999999996 67888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHH
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDD 186 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~e 186 (235)
...++.++++.|+|+.. +.+.+|+||||+ .|.++|.|--.|...+.++..-|+||.+++.+++..|+++|++||
T Consensus 96 ~~aA~l~r~~~Y~~re~-----L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE 170 (224)
T KOG0174|consen 96 HTAASLFREICYNYREM-----LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEE 170 (224)
T ss_pred HHHHHHHHHHHHhCHHh-----hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHH
Confidence 99999999999988643 789999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCC-CCCCcEEEEEEecCCc-EEEcCHHHHHHHH
Q 026627 187 AVHTAILTLKEGFEGQ-ISEKNIEIGIIGEKKE-FRVLTPNEIRDYL 231 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~-~~~~~iei~~i~~~~~-~~~l~~~ei~~~l 231 (235)
++++..+|+..++.|| .+++-|.+.+|+++|. .+.+.++++.++.
T Consensus 171 ~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 171 CVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFA 217 (224)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccc
Confidence 9999999999999998 5899999999999974 3456677665543
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=223.56 Aligned_cols=215 Identities=20% Similarity=0.241 Sum_probs=185.9
Q ss_pred ccccCCCCccchh--hc----HHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhh
Q 026627 10 LTTFSPSGKLVQI--EH----ALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 10 ~~~fsp~Grl~Q~--ey----a~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
.++|.|.|...-- +| .+..+.+|+++||++++||||+|+|+..+. ++.+.++.++|++++||+++|+||..+|
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 4678888654221 12 233455799999999999999999999996 7888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeE
Q 026627 83 FRVLVRKSRKQAEQYH-RLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~-~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~ 160 (235)
+|.|.+.+........ +..++.+.|+.+++++.+.+|..+ +++.|+..++++||+++ ..|.|..+|..|..++.+.
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~rR--sKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~ 170 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYARR--SKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPV 170 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHHhh--hccCchhhheeEeeecCCCCeeEEEEeeccccccCch
Confidence 9999999988877743 555689999999999999997554 56999999999999999 4599999999999999999
Q ss_pred EeeCCCchHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHH
Q 026627 161 SAMGKNVSNAKTFLEKRYV---EEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEI 227 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~---~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei 227 (235)
.|+|.|..++.++|++.|. ++++.+||..++.+||+...+||. +.++|+|++|+.+| +..-.|..|
T Consensus 171 vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv 240 (256)
T KOG0185|consen 171 VATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQV 240 (256)
T ss_pred hhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceee
Confidence 9999999999999999997 579999999999999999999997 88999999999964 655444443
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=1.8e-31 Score=210.04 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=142.0
Q ss_pred CCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHH
Q 026627 32 GQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQ 109 (235)
Q Consensus 32 G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 109 (235)
|+|+||++++||||||+|+|++. .++.+++.+||++| +++++|+++|..+|+|.|.+.++.+++.|+. + . .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence 78999999999999999999985 67888999999999 9999999999999999999999999999872 2 1 455
Q ss_pred HHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEee--eEEeeCCCchHHHHHHHHhcc-CCCCHHH
Q 026627 110 LVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYV-EEMELDD 186 (235)
Q Consensus 110 l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~~s~~~~~~L~~~~~-~~~s~~e 186 (235)
+++.+..+ +.....+|+.+++|++ |. |+||.+||.|+..+. ++.++|+|+.++.++|++.|+ ++| |
T Consensus 76 ~a~l~~~l----~~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---e 144 (172)
T PRK05456 76 AVELAKDW----RTDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---S 144 (172)
T ss_pred HHHHHHHH----HhccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---C
Confidence 55544332 1112246888999984 43 799999999999776 799999999999999999999 999 9
Q ss_pred HHHHHHHHHHhhccCCC-CCCcEEEEE
Q 026627 187 AVHTAILTLKEGFEGQI-SEKNIEIGI 212 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~~-~~~~iei~~ 212 (235)
|++++++|++.+.+||. ++++|+|-.
T Consensus 145 A~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 145 AEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999996 899988754
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.2e-29 Score=197.55 Aligned_cols=161 Identities=42% Similarity=0.601 Sum_probs=154.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccc-cCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+||++++||||+|+|++.+..+.. ..+..||+.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999876544 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEee-eEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~-~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+.+++.++.+++ .||+++++|++|+|+++|+||.+||.|++.++ +++++|.++..+.++|++.|+++++.+|++++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999887 79999999999999988999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHH
Q 026627 191 AILTLK 196 (235)
Q Consensus 191 ~~~~l~ 196 (235)
+.+||+
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999986
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=4e-30 Score=201.01 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=138.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecC-cEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTP-NIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (235)
+|+||++++||||||+|+|++. .++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999885 6788899999999999 999999999999999999999999999888663 44
Q ss_pred HHHHHHHHHHHhhcCCcccce-eEEEEEEEeCCCCeEEEECCCCcEEee--eEEeeCCCchHHHHHHHHhccCC-CCHHH
Q 026627 111 VRETAAVMQEFTQSGGVRPFG-VSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYVEE-MELDD 186 (235)
Q Consensus 111 ~~~l~~~~~~~~~~~~~rP~~-~~~il~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~~s~~~~~~L~~~~~~~-~s~~e 186 (235)
++.+..++ .+ ..+|+. +.++++++ ++||.+||.|...+. ++.++|+|+++++++|+..|+++ |+
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS--- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence 55433332 11 245655 55665534 489999999999998 49999999999999999999995 99
Q ss_pred HHHHHHHHHHhhccCCC-CCCcEEEEE
Q 026627 187 AVHTAILTLKEGFEGQI-SEKNIEIGI 212 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~~-~~~~iei~~ 212 (235)
+.+++.+|++.|.+||. ++++|+|-.
T Consensus 144 ~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 55999999999999996 899988754
No 46
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.7e-30 Score=192.97 Aligned_cols=184 Identities=20% Similarity=0.225 Sum_probs=173.3
Q ss_pred cCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026627 30 GSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVT 108 (235)
Q Consensus 30 ~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 108 (235)
-+|+++||+++++||.||+|.|... ......+++|||+++|++++|.+|++.|+|.+.+.++...+.|+++.++++-++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4799999999999999999999875 445577999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEe-eeEEeeCCCchHHHHHHHHhccCCCCHHH
Q 026627 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFS-WKASAMGKNVSNAKTFLEKRYVEEMELDD 186 (235)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~-~~~~a~G~~s~~~~~~L~~~~~~~~s~~e 186 (235)
.+++++|..+|..+ .-||-+..++||+|+ +.|++...|..|.... .+|++.|.+++..++..|..|+|+|..|+
T Consensus 86 ~~s~mvS~~lYekR----fgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKR----FGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHHHHhh----cCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 99999999998876 679999999999998 4599999999999986 49999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 187 AVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
..+.+..+|-++.+||. ++....|.+|+|++
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 99999999999999995 99999999999986
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.9e-29 Score=197.21 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=136.4
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (235)
+|+||++++||||||+|+|++. .++.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999885 67888999999999 599999999999999999999999999887642 3666
Q ss_pred HHHHHHHHHHHhhcCCccc-ceeEEEEEEEeCCCCeEEEECCCCcEEee--eEEeeCCCchHHHHHHHHhcc-CCCCHHH
Q 026627 111 VRETAAVMQEFTQSGGVRP-FGVSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYV-EEMELDD 186 (235)
Q Consensus 111 ~~~l~~~~~~~~~~~~~rP-~~~~~il~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~~s~~~~~~L~~~~~-~~~s~~e 186 (235)
++.++.+ ..+ ..+| +.+.++++++ ++||.+||.|...+. ++.++|+||++++++|+..|+ ++|+
T Consensus 76 a~l~~~~----~~~-~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s--- 143 (171)
T TIGR03692 76 VELAKDW----RTD-RYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS--- 143 (171)
T ss_pred HHHHHHH----hhc-ccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---
Confidence 6655442 111 1233 4466666543 499999999999996 699999999999999999994 6677
Q ss_pred HHHHHHHHHHhhccCCC-CCCcEEEEE
Q 026627 187 AVHTAILTLKEGFEGQI-SEKNIEIGI 212 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~~-~~~~iei~~ 212 (235)
|++++.++++.|.++|. ++.+|+|-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999996 899988754
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-14 Score=113.06 Aligned_cols=184 Identities=13% Similarity=0.192 Sum_probs=142.5
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEe---cC-cEEEEEecChhhHHHHHHHHHHHHHHHHHHhC-CCCCH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSL---TP-NIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYK-EPIPV 107 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i---~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~~ 107 (235)
+-|||++...|.|+++|+|++..+-.-...+|+|.. ++ -++++.+|+.+-.|.+++.+.+..+.-+-..- ...+.
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 459999999999999999998776555678888755 33 46778899999999999999776652211111 22344
Q ss_pred HHHHHHHHHHHHHHhhcCC------cccceeEEEEEEEeC-CCCeEEEECCCCcEEe----eeEEeeCCCchHHHHHHHH
Q 026627 108 TQLVRETAAVMQEFTQSGG------VRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFS----WKASAMGKNVSNAKTFLEK 176 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~------~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~----~~~~a~G~~s~~~~~~L~~ 176 (235)
-+.+..++.....-..+.. .--|.|++|++|.=. +.|.||.|.|.|++.+ .+|..+|. +.+.+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhh
Confidence 5555555554432221110 124889999999755 3489999999999996 38999997 7789999999
Q ss_pred hccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 177 RYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 177 ~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
.+..+++++|+.+.++.++...+++++ .+-++++.++.+|.
T Consensus 161 ~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 999999999999999999999999986 78999999999984
No 49
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.58 E-value=7e-16 Score=78.95 Aligned_cols=23 Identities=57% Similarity=0.879 Sum_probs=22.3
Q ss_pred CCCcccccCCCCccchhhcHHHh
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTA 28 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka 28 (235)
||+++|+|||||||+|||||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-11 Score=93.26 Aligned_cols=167 Identities=20% Similarity=0.185 Sum_probs=118.8
Q ss_pred CCCcEEEEEeCCEEEEEEeecCC-CCccccCCceeEEEecC-cEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHH
Q 026627 31 SGQTSLGIKASNGVVIATEKKLP-SILVDESSVHKIQSLTP-NIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVT 108 (235)
Q Consensus 31 ~G~tivgi~~~dgvvla~d~~~~-~~l~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 108 (235)
+++||++++-++.+++++|.+++ ++.+...+..|+.+|.. +++.|++|.++|+..+.+.+..+++.|.-. +.
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L~ 76 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------LF 76 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc------HH
Confidence 68999999999999999999988 46666777777777655 899999999999999999999988876411 11
Q ss_pred HHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEee--eEEeeCCCchHHHHHHHHhccC-CCCHH
Q 026627 109 QLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYVE-EMELD 185 (235)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~~s~~~~~~L~~~~~~-~~s~~ 185 (235)
..+-.+++-++ .-...|.+.+-++++ |+ -.++-+.-.|-..+. +.++||+|-.++.+.-...+.. +++
T Consensus 77 raavelaKdwr---~Dk~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls-- 147 (178)
T COG5405 77 RAAVELAKDWR---TDKYLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS-- 147 (178)
T ss_pred HHHHHHHHhhh---hhhHHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC--
Confidence 22233333332 222245677777775 43 457888889988864 6999999999999888777653 554
Q ss_pred HHHHHHHHHHHhhccCC-CCCCcEEEEEE
Q 026627 186 DAVHTAILTLKEGFEGQ-ISEKNIEIGII 213 (235)
Q Consensus 186 ea~~l~~~~l~~~~~~~-~~~~~iei~~i 213 (235)
|.+++.++|..+.+-. .++.++.|-.+
T Consensus 148 -A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 -AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred -HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 5567778887654422 24444444433
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.19 E-value=0.057 Score=42.89 Aligned_cols=151 Identities=20% Similarity=0.231 Sum_probs=92.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVR 112 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~ 112 (235)
+.+||..+++|.|+|.|+|. +++-|.-.....|.+.| -.|.--+-++|.+
T Consensus 2 SLII~y~GknGaViaGDkR~---------------------I~F~G~~~~re~LEeeL---------YsG~IktdeEL~k 51 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN---------------------IAFRGDEEKREKLEEEL---------YSGKIKTDEELLK 51 (194)
T ss_pred eEEEEEecCCCcEEecccee---------------------eeecCCHHHHHHHHHHH---------hCCccCCHHHHHH
Confidence 56899999999999999874 34556666565555533 1234444566666
Q ss_pred HHHHHHHHHhhcC---CcccceeEEEEEEEeC------CCCeEEEECCCCcEE-------eeeEEeeCCCc---------
Q 026627 113 ETAAVMQEFTQSG---GVRPFGVSLLVAGYDD------KGPQLYQVDPSGSYF-------SWKASAMGKNV--------- 167 (235)
Q Consensus 113 ~l~~~~~~~~~~~---~~rP~~~~~il~G~d~------~gp~Ly~id~~G~~~-------~~~~~a~G~~s--------- 167 (235)
...++=-...-.. .-+-.+- +++|.+-. ..-.+|.+ .|++. +..-...|.++
T Consensus 52 kA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t--~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~ 128 (194)
T PF09894_consen 52 KAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYAT--KGKYAIVEIENDEITNKSRGEGSGIIVFGNKF 128 (194)
T ss_pred HHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEec--CCCEEEEEecCCeEEEEecCCceeEEEECCHH
Confidence 5444221110000 1111222 44443432 22346553 23322 11223334443
Q ss_pred --hHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCC-CCCCcEEEEEEecC
Q 026627 168 --SNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQ-ISEKNIEIGIIGEK 216 (235)
Q Consensus 168 --~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~-~~~~~iei~~i~~~ 216 (235)
+.+...|.+.|++.|+++++..+..++|..+.... ..+..+++...++.
T Consensus 129 ~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 129 TKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 78889999999999999999999999999986653 57788998888764
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.72 E-value=0.077 Score=43.63 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=104.3
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVR 112 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~ 112 (235)
+.+|+..++||.|+|.|+|. +.+-|.-.|.+.+.+.+ -.|.-.+-++|++
T Consensus 2 tLviay~gknGaviaGDrR~---------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE---------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccceE---------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHH
Confidence 56899999999999999873 23456666666665543 2356666778877
Q ss_pred HHHHHHHHHhhc---CCcccceeEEEEEEEeCCC------CeEEEECCCCcEE--e-----e---------eEEeeCC--
Q 026627 113 ETAAVMQEFTQS---GGVRPFGVSLLVAGYDDKG------PQLYQVDPSGSYF--S-----W---------KASAMGK-- 165 (235)
Q Consensus 113 ~l~~~~~~~~~~---~~~rP~~~~~il~G~d~~g------p~Ly~id~~G~~~--~-----~---------~~~a~G~-- 165 (235)
...++--+++-. ..-|...-+++++.+...+ -.+|.+ .|++. + . ...+-|.
T Consensus 52 ~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 52 KAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 766544222211 1122233344444454322 234442 23322 0 1 1222231
Q ss_pred CchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccC-CCCCCcEEEEEEecC-CcEEEcCHHHHHHHH
Q 026627 166 NVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEG-QISEKNIEIGIIGEK-KEFRVLTPNEIRDYL 231 (235)
Q Consensus 166 ~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~-~~~~~~iei~~i~~~-~~~~~l~~~ei~~~l 231 (235)
-.+.+..+|.+.|.+.++++++..++..+|..+... ...+..++++.+++. .++.+|-+.+|+.+.
T Consensus 130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L~ 197 (293)
T COG4079 130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETLR 197 (293)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence 126778889999999999999999999999987743 457889999999876 346666667766543
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=84.42 E-value=2.1 Score=32.05 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=40.5
Q ss_pred EEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 147 YQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 147 y~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
..+|-+|.....+|-..|.||.-+.+-+-..|-..+++||+..+-
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIk 115 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIK 115 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcc
Confidence 367889999999999999999999999999999999999987653
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=62.01 E-value=9.9 Score=24.43 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=29.5
Q ss_pred ccccCC-CCccchhhcHHHhhcCCCcEEEEEeCC
Q 026627 10 LTTFSP-SGKLVQIEHALTAVGSGQTSLGIKASN 42 (235)
Q Consensus 10 ~~~fsp-~Grl~Q~eya~ka~~~G~tivgi~~~d 42 (235)
.|.||+ +|.+.--+|+..|..+|-..+|++-.+
T Consensus 5 Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 5 HSDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred ccCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 467898 999888899999999999999998887
No 55
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=52.38 E-value=30 Score=21.10 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=25.5
Q ss_pred EEEECCCCcEEeeeEEeeCCCchHHHHHHHHhc
Q 026627 146 LYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 178 (235)
Q Consensus 146 Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~ 178 (235)
-|.|+|+|.....--...|.....+...|++..
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 367999999988777778887777777776643
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=51.50 E-value=12 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=23.8
Q ss_pred eeCCCchHHHHHHHHhc-cCCCCHHHHHHHHHHH
Q 026627 162 AMGKNVSNAKTFLEKRY-VEEMELDDAVHTAILT 194 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~-~~~~s~~ea~~l~~~~ 194 (235)
+-|.....+...+.+.. .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 35777888888888877 7889988877776653
No 57
>PRK07328 histidinol-phosphatase; Provisional
Probab=41.02 E-value=29 Score=29.15 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=31.2
Q ss_pred CCCCCCCCc-ccccCCCCccchhhcHHHhhcCCCcEEEEEeC
Q 026627 1 MGDSQYSFS-LTTFSPSGKLVQIEHALTAVGSGQTSLGIKAS 41 (235)
Q Consensus 1 ~~~~~yd~~-~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~ 41 (235)
||. +|.+ .|.||++|.-.--||+.+|+.+|=..+|++-.
T Consensus 1 ~m~--~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 1 KML--VDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CCc--eeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecC
Confidence 554 3443 46899999887668999999999999999876
No 58
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=40.85 E-value=63 Score=23.57 Aligned_cols=32 Identities=16% Similarity=0.403 Sum_probs=24.7
Q ss_pred CCCcEEEEEEecCCcEEE-----cCHHHHHHHHHHcC
Q 026627 204 SEKNIEIGIIGEKKEFRV-----LTPNEIRDYLAEVE 235 (235)
Q Consensus 204 ~~~~iei~~i~~~~~~~~-----l~~~ei~~~l~~~~ 235 (235)
....+.+..|+|||+.|. ++.++|-..+++|+
T Consensus 76 ~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 76 PPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAMP 112 (118)
T ss_pred CCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCCc
Confidence 356799999999987764 67777777777664
No 59
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=37.76 E-value=33 Score=26.96 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.0
Q ss_pred cCCCCccchh-hcHHHhhcCCCcEEEEEeCCEEEEEE
Q 026627 13 FSPSGKLVQI-EHALTAVGSGQTSLGIKASNGVVIAT 48 (235)
Q Consensus 13 fsp~Grl~Q~-eya~ka~~~G~tivgi~~~dgvvla~ 48 (235)
+||.|.---| +=+.+|.++|-++||++++||=-++.
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~ 152 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAG 152 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCccccc
Confidence 6777766444 44566677999999999999876653
No 60
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.05 E-value=68 Score=30.85 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=67.7
Q ss_pred EecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcE
Q 026627 76 YSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSY 155 (235)
Q Consensus 76 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~ 155 (235)
-+|.++-+-.+++.+ | ....|+++....|.++.+.++|-.... -|-|..+++.+=-.||.||..|-.|--
T Consensus 192 eAGRAaAc~sLcRIf---c---SKksgEeIl~a~LS~FY~ll~Q~Lq~k----dyvchpmLasl~ln~p~LFccdLkGId 261 (1215)
T KOG3652|consen 192 EAGRAAACASLCRIF---C---SKKSGEEILNAQLSNFYALLFQCLQEK----DYVCHPMLASLFLNGPNLFCCDLKGID 261 (1215)
T ss_pred hhhHHHHHHHHHHhh---h---cccCcccccHHHHHHHHHHHHHHHhhc----ccccchhheeeeecCCceeeecCCchh
Confidence 455555454554433 2 234678999999999999888755433 355666666554468999999998865
Q ss_pred EeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 026627 156 FSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF 199 (235)
Q Consensus 156 ~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~ 199 (235)
.-.++....--.-.+...+-+.++.-.+..|.-+..+++|..++
T Consensus 262 ~llP~Fi~ALd~il~dre~~rkfkS~~n~tElRRa~in~LlSli 305 (1215)
T KOG3652|consen 262 SLLPHFIFALDIILIDREKLRKFKSISNETELRRACINALLSLI 305 (1215)
T ss_pred HhhHHHHHHHHhhhccHHHhhhccccCCHHHHHHHHHHHHHHhc
Confidence 43333221111111112222233344457788888888887665
No 61
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=35.72 E-value=33 Score=26.01 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=27.2
Q ss_pred ccccC-CCCccchhhcHHHhhcCCCcEEEEEeC
Q 026627 10 LTTFS-PSGKLVQIEHALTAVGSGQTSLGIKAS 41 (235)
Q Consensus 10 ~~~fs-p~Grl~Q~eya~ka~~~G~tivgi~~~ 41 (235)
.|.|| ++|..---||+.+|.++|=+.||++-.
T Consensus 6 HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 6 HTKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp --TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred cccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 46788 899998889999999999999999877
No 62
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=33.76 E-value=1.6e+02 Score=20.84 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=26.7
Q ss_pred CCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 203 ISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 203 ~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
++++..-+|+...-|.|.++++.++++++..+
T Consensus 75 ~agg~yavci~Gn~GVFVe~~kadf~kIfk~L 106 (109)
T COG4831 75 VAGGKYAVCIMGNVGVFVELDKADFNKIFKTL 106 (109)
T ss_pred EecCceEEEEecceeEEEEcchhhHHHHHHHH
Confidence 35678889999987889999999999988765
No 63
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=33.55 E-value=75 Score=18.61 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=21.2
Q ss_pred cccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEE
Q 026627 11 TTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIA 47 (235)
Q Consensus 11 ~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla 47 (235)
.+-.|||+..|+-- |-.-|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~~-------~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFPH-------GVANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECCc-------ccceEEEECCceEEee
Confidence 35679999999843 2225677888888864
No 64
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=31.90 E-value=48 Score=27.23 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCC
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASN 42 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~d 42 (235)
|| -||+++.+ +|+|...--|++.+|...|=..||++...
T Consensus 1 ~m--~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH~ 39 (237)
T PRK00912 1 MK--FYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNHS 39 (237)
T ss_pred CC--ceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecCc
Confidence 55 47998888 58898877799999999999999998664
No 65
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.93 E-value=56 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=28.1
Q ss_pred eeEEEecCcEEEEEecChhhHHHHHHHHHHHHH
Q 026627 63 HKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAE 95 (235)
Q Consensus 63 ~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~ 95 (235)
--++.|.+..++.+.|..+|+-.+.+++++...
T Consensus 8 ~~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~ 40 (124)
T COG4728 8 LIIFKIKDKLGLTFVSKSADMSIQVEKAERLIK 40 (124)
T ss_pred eEEEEEhhhcCcEEEEecchhHHHHHHHHHhhc
Confidence 347899999999999999999999998876543
No 66
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=29.26 E-value=75 Score=22.77 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=31.8
Q ss_pred cCCCCHHHHHHHHHHHHHhh---ccCC-CCC-----CcEEEEEE--ecCCcEEE----cCHHHHHHHHHHcC
Q 026627 179 VEEMELDDAVHTAILTLKEG---FEGQ-ISE-----KNIEIGII--GEKKEFRV----LTPNEIRDYLAEVE 235 (235)
Q Consensus 179 ~~~~s~~ea~~l~~~~l~~~---~~~~-~~~-----~~iei~~i--~~~~~~~~----l~~~ei~~~l~~~~ 235 (235)
-.-+|.|.++..+.+|++.. .++. ... ++.-+.+. +++|.... =+++||++||+.+|
T Consensus 15 aNALs~E~v~~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg~~i~~g~lPt~~eVe~Fl~~v~ 86 (105)
T PF09702_consen 15 ANALSPEAVEVALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEGNYIIVGYLPTDEEVEDFLDDVE 86 (105)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhccccccccccccCccccceeeccCCCCEEecCCCCChHHHHHHHHHHH
Confidence 34578888877777777643 2221 111 22223333 34443332 46788999998764
No 67
>PRK06361 hypothetical protein; Provisional
Probab=28.91 E-value=58 Score=26.05 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=29.5
Q ss_pred ccccCCCCccchhhcHHHhhcCCCcEEEEEeCCE
Q 026627 10 LTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNG 43 (235)
Q Consensus 10 ~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dg 43 (235)
.|.|| +|+..--|++..|...|=..|||+....
T Consensus 2 Ht~~s-dg~~~~~e~v~~A~~~Gl~~i~iTDH~~ 34 (212)
T PRK06361 2 HTIFS-DGELIPSELVRRARVLGYRAIAITDHAD 34 (212)
T ss_pred Ccccc-CCCCCHHHHHHHHHHcCCCEEEEecCCC
Confidence 57899 8999989999999999999999998853
No 68
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=28.80 E-value=2.6e+02 Score=21.77 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=41.7
Q ss_pred CCeEEEECCCCcEEeeeEEeeC-CCchHHHHHHHHhcc--------------------CCCCHHHHHHHHHHHHHhhccC
Q 026627 143 GPQLYQVDPSGSYFSWKASAMG-KNVSNAKTFLEKRYV--------------------EEMELDDAVHTAILTLKEGFEG 201 (235)
Q Consensus 143 gp~Ly~id~~G~~~~~~~~a~G-~~s~~~~~~L~~~~~--------------------~~~s~~ea~~l~~~~l~~~~~~ 201 (235)
+..+-.+.|-|...-......| ..++.+...|++.++ .++|++.|..++.+.|......
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4557778888888777777778 555666666555332 1689999999999999765543
No 69
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=28.72 E-value=83 Score=19.46 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEec
Q 026627 182 MELDDAVHTAILTLKEGFEGQISEKNIEIGIIGE 215 (235)
Q Consensus 182 ~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~ 215 (235)
-|++||++.+.+-|.. ....+++-++.+
T Consensus 5 kt~eeAi~~A~~~l~~------~~~~~~~eVi~~ 32 (52)
T PF14804_consen 5 KTVEEAIEKALKELGV------PREELEYEVIEE 32 (52)
T ss_dssp SSHHHHHHHHHHHTT--------GGGEEEEEEE-
T ss_pred CCHHHHHHHHHHHhCC------ChHHEEEEEEEc
Confidence 3789999999888874 335788888887
No 70
>PRK09248 putative hydrolase; Validated
Probab=28.63 E-value=56 Score=26.96 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=32.0
Q ss_pred CCCCccc-ccCCCCccchhhcHHHhhcCCCcEEEEEeCC
Q 026627 5 QYSFSLT-TFSPSGKLVQIEHALTAVGSGQTSLGIKASN 42 (235)
Q Consensus 5 ~yd~~~~-~fsp~Grl~Q~eya~ka~~~G~tivgi~~~d 42 (235)
-+|.++. .||++|...--||+..|.+.|=..|||+-..
T Consensus 4 ~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~ 42 (246)
T PRK09248 4 PVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHG 42 (246)
T ss_pred ceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
Confidence 4676654 6999998887789999999999999999764
No 71
>PRK08123 histidinol-phosphatase; Reviewed
Probab=28.13 E-value=73 Score=26.75 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCCCCCCCc-ccccCCCCccch-hhcHHHhhcCCCcEEEEEeC
Q 026627 1 MGDSQYSFS-LTTFSPSGKLVQ-IEHALTAVGSGQTSLGIKAS 41 (235)
Q Consensus 1 ~~~~~yd~~-~~~fsp~Grl~Q-~eya~ka~~~G~tivgi~~~ 41 (235)
||.. |++ .|.||++|.--. -||+..|+++|=..+|++-.
T Consensus 1 ~m~~--D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 1 MMKR--DGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CCcc--ccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 5543 443 468899875434 47999999999999999866
No 72
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=27.20 E-value=56 Score=27.03 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.6
Q ss_pred ccccCCCCccchhhcHHHhhcCCCcEEEEEe
Q 026627 10 LTTFSPSGKLVQIEHALTAVGSGQTSLGIKA 40 (235)
Q Consensus 10 ~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~ 40 (235)
.|.|| +|...-.|++.+|...|-..++++-
T Consensus 8 HT~~s-dg~~~~~e~~~~A~~~g~~~~~iTd 37 (237)
T COG1387 8 HTVFS-DGEATPEEMVEAAIELGLEYIAITD 37 (237)
T ss_pred Ccccc-cCCCCHHHHHHHHHHcCCeEEEEec
Confidence 58899 9999999999999999998888753
No 73
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=26.95 E-value=2.1e+02 Score=20.97 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=39.2
Q ss_pred EEECCC-CcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcc
Q 026627 147 YQVDPS-GSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFE 200 (235)
Q Consensus 147 y~id~~-G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~ 200 (235)
..+|.+ |...+..|.+.|...-.+-.-+=-.+-.+.+++||.++..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 567887 888888999999777666555555566788999998776655554443
No 74
>PRK09732 hypothetical protein; Provisional
Probab=26.83 E-value=1.4e+02 Score=22.43 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 026627 180 EEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK 217 (235)
Q Consensus 180 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~ 217 (235)
+.||++.|.+++..++..+.+. +.++-|++++..+
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~---g~~v~iaVvD~~G 39 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN---NWSVSIAVADDGG 39 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh---CCCEEEEEEcCCC
Confidence 4689999999999999987663 5689999999876
No 75
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=26.22 E-value=29 Score=19.41 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=7.4
Q ss_pred CcccccCCCCcc
Q 026627 8 FSLTTFSPSGKL 19 (235)
Q Consensus 8 ~~~~~fsp~Grl 19 (235)
.....|||||+-
T Consensus 11 ~~~p~~SpDGk~ 22 (39)
T PF07676_consen 11 DGSPAWSPDGKY 22 (39)
T ss_dssp EEEEEE-TTSSE
T ss_pred ccCEEEecCCCE
Confidence 335678899864
No 76
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.12 E-value=18 Score=20.94 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=13.9
Q ss_pred ccccCCCCccchhhcHHH
Q 026627 10 LTTFSPSGKLVQIEHALT 27 (235)
Q Consensus 10 ~~~fsp~Grl~Q~eya~k 27 (235)
+++--.||++.|+|--.|
T Consensus 18 V~iiiqdG~vvQIe~~EK 35 (38)
T PF10055_consen 18 VTIIIQDGRVVQIEKTEK 35 (38)
T ss_pred EEEEEECCEEEEEEhhhh
Confidence 666778999999987554
No 77
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.98 E-value=1.9e+02 Score=19.96 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=22.9
Q ss_pred hHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 026627 168 SNAKTFLEKRYVEEMELDDAVHTAILTLK 196 (235)
Q Consensus 168 ~~~~~~L~~~~~~~~s~~ea~~l~~~~l~ 196 (235)
..+..+|++...+++|+++.+++=.+++.
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~ 60 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQ 60 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 56788899999999999988877555544
No 78
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=24.42 E-value=1.4e+02 Score=20.73 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=33.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHH
Q 026627 179 VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEI 227 (235)
Q Consensus 179 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei 227 (235)
...++..|.++++++-++.. .+..++-++.+-..|..++|+.+|-
T Consensus 20 sS~~tt~eVI~~LL~KFkv~----~~p~~FALy~vh~~Ge~rkL~d~E~ 64 (87)
T cd01784 20 NSTMTTPQVLKLLLNKFKIE----NSAEEFALYIVHTSGEKRKLKATDY 64 (87)
T ss_pred ecCCCHHHHHHHHHHhcccc----CCHHHeEEEEEeeCCCEEECCCcCC
Confidence 45678888888887777642 3667888888887777888888763
No 79
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=24.06 E-value=2.6e+02 Score=19.57 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-cCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHH
Q 026627 169 NAKTFLEKRYVEEMELDDAVHTAILTLKEGF-EGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAE 233 (235)
Q Consensus 169 ~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~-~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~ 233 (235)
.+..+|+..+.+.++.+++++...+.|..-. .| +......++.+++..+++-
T Consensus 23 i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~sv~r-------------pp~~~~iFs~~~~~~i~~y 75 (101)
T PF14769_consen 23 ILKELLEKNIEKGMSLEDSFKYFKELLLRHSVQR-------------PPFSIGIFSVDQVKAIIDY 75 (101)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHhccCC-------------CCcccCcCCHHHHHHHHHH
Confidence 4556667566689999999999999885322 22 1112566777777777653
No 80
>PRK11325 scaffold protein; Provisional
Probab=23.66 E-value=2.5e+02 Score=20.64 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=37.4
Q ss_pred EECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 026627 148 QVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKE 197 (235)
Q Consensus 148 ~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~ 197 (235)
.+|++|...+..|.+.|.....+-.-+=-.+-.+.+++||..+....+..
T Consensus 46 ~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 46 KVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 45567888888999999777666665555667788999999887765554
No 81
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=23.40 E-value=1.3e+02 Score=20.57 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEE
Q 026627 181 EMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRV 221 (235)
Q Consensus 181 ~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~ 221 (235)
.+-.+|++++|..|+..- .+.++-+.++|.+...+++...
T Consensus 33 ~l~qqEvLnvA~MAvQT~-Q~~L~lNGv~V~v~~~~~~i~V 72 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTG-QDHLSLNGVEVQVERTQKGIIV 72 (82)
T ss_pred HHHHHHHHHHHHHHHHhC-cceEEEcCeEEEEEEcCCeEEE
Confidence 345679999999999853 3457778889988888765544
No 82
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=23.28 E-value=1.3e+02 Score=20.95 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEecC-CcEEEcCHHHHHHHHH
Q 026627 209 EIGIIGEK-KEFRVLTPNEIRDYLA 232 (235)
Q Consensus 209 ei~~i~~~-~~~~~l~~~ei~~~l~ 232 (235)
-|++.+++ +.|+.+++++|..+..
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG 44 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWG 44 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHh
Confidence 47888874 6799999999988764
No 83
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=23.11 E-value=57 Score=27.88 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=36.5
Q ss_pred EEEeC-CC-CeEEEECCCCcEEeeeEEeeCCC-chHHHHHHHHhcc-CCCCHHHHHHHHHHH
Q 026627 137 AGYDD-KG-PQLYQVDPSGSYFSWKASAMGKN-VSNAKTFLEKRYV-EEMELDDAVHTAILT 194 (235)
Q Consensus 137 ~G~d~-~g-p~Ly~id~~G~~~~~~~~a~G~~-s~~~~~~L~~~~~-~~~s~~ea~~l~~~~ 194 (235)
.|.|+ .| +-....-..|-|.+. ..|.. -.....-|-+.|. +++++|+|++|+..=
T Consensus 78 LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLsLP 136 (298)
T COG1754 78 LGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLLSLP 136 (298)
T ss_pred cccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHHcCc
Confidence 36785 55 556667777777654 45654 5555666667776 479999999887543
No 84
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=23.08 E-value=2.5e+02 Score=21.39 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=30.2
Q ss_pred cCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 026627 179 VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK 217 (235)
Q Consensus 179 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~ 217 (235)
.+.+|+++|.+++..++.++.+ .+.++.|.+++..+
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~---~g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQ---LGVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHH---hCCceEEEEECCCC
Confidence 4678999999999999887654 37899999999876
No 85
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=22.85 E-value=3.2e+02 Score=20.88 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=38.9
Q ss_pred eEEE-ECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHH
Q 026627 145 QLYQ-VDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILT 194 (235)
Q Consensus 145 ~Ly~-id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~ 194 (235)
.||. +| .|......|-..|.+...+-+-+=-.+-.+.|.+||+++....
T Consensus 44 ~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~ 93 (150)
T COG0822 44 TLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAF 93 (150)
T ss_pred EEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3443 45 8888888999999888888887777888999999999998433
No 86
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.73 E-value=4e+02 Score=21.61 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=38.9
Q ss_pred CCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcE-----EEEEEecC
Q 026627 143 GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNI-----EIGIIGEK 216 (235)
Q Consensus 143 gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~i-----ei~~i~~~ 216 (235)
-|.||.+||+....-..+. .-..++..|+.. ++++..+=...+++.--.-..+-|++..|+ .+++|+..
T Consensus 63 ~P~v~dvD~~~~~I~me~I----~G~~lkd~l~~~-~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~i~~IDfG 136 (204)
T COG3642 63 VPIVYDVDPDNGLIVMEYI----EGELLKDALEEA-RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGRIYFIDFG 136 (204)
T ss_pred CCeEEEEcCCCCEEEEEEe----CChhHHHHHHhc-chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCcEEEEECC
Confidence 4999999999977665544 223456566654 233333333333333323334456655555 37888864
No 87
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=22.42 E-value=1.1e+02 Score=16.56 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=16.2
Q ss_pred EEEEEEEeCCCCeEEEECCCCc
Q 026627 133 SLLVAGYDDKGPQLYQVDPSGS 154 (235)
Q Consensus 133 ~~il~G~d~~gp~Ly~id~~G~ 154 (235)
+..+.|.-+..|.||.|-.+|.
T Consensus 5 ~~~v~G~rPg~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARPGSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccCCCcEEEEeeccCc
Confidence 3445666677799999988875
No 88
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.21 E-value=2.7e+02 Score=19.13 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=35.9
Q ss_pred cCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC-cEEEcCHHHHHHHHH
Q 026627 179 VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK-EFRVLTPNEIRDYLA 232 (235)
Q Consensus 179 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~-~~~~l~~~ei~~~l~ 232 (235)
.+.++.++..+.++....- .....|.+.|++.+| ++..=+.+|+++-++
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~r 66 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFR 66 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHH
Confidence 3466777777776666552 356799999999875 688888888877654
No 89
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=22.17 E-value=2.4e+02 Score=20.46 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=31.8
Q ss_pred cCCCCHHHHHHHHHHHHHhhccC-CCCCCcEEEEEEecCCcEEEcCHHH
Q 026627 179 VEEMELDDAVHTAILTLKEGFEG-QISEKNIEIGIIGEKKEFRVLTPNE 226 (235)
Q Consensus 179 ~~~~s~~ea~~l~~~~l~~~~~~-~~~~~~iei~~i~~~~~~~~l~~~e 226 (235)
...++..|.++++++-++- +. -.+.+++-++.+-.+|..++|+.+|
T Consensus 43 sS~~tt~eVI~~LLeKFk~--d~~~~s~p~FALYevh~nGe~RKL~d~E 89 (112)
T cd01782 43 SSTATTRDVIDTLSEKFRP--DMRMLSNPTYSLYEVHENGEERRLLDDE 89 (112)
T ss_pred ecCCCHHHHHHHHHHHhcc--cccccCCcceEEEEEecCCceEEcCCcC
Confidence 3456777777777776662 21 1355688888888777788888876
No 90
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=22.07 E-value=1.3e+02 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEecCCcEE-----EcCHHHHHHHHHHc
Q 026627 209 EIGIIGEKKEFR-----VLTPNEIRDYLAEV 234 (235)
Q Consensus 209 ei~~i~~~~~~~-----~l~~~ei~~~l~~~ 234 (235)
-|.+++|+|.++ .|+++|+++++.-|
T Consensus 127 aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred eEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 477889998655 39999999988654
No 91
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=21.78 E-value=82 Score=26.13 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=28.2
Q ss_pred ccccCCCCccchhhcHHHhhcCCCcEEEEEeCC
Q 026627 10 LTTFSPSGKLVQIEHALTAVGSGQTSLGIKASN 42 (235)
Q Consensus 10 ~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~d 42 (235)
.|.||++|.-.=-||+..|+++|=..+|++-..
T Consensus 6 Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~ 38 (253)
T TIGR01856 6 HSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHA 38 (253)
T ss_pred CcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCC
Confidence 468999997766689999999999999998764
No 92
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=21.73 E-value=38 Score=24.83 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=9.3
Q ss_pred cccccCCCCccc
Q 026627 9 SLTTFSPSGKLV 20 (235)
Q Consensus 9 ~~~~fsp~Grl~ 20 (235)
...+|||||..+
T Consensus 71 HvHvfSpDG~~l 82 (122)
T PF12566_consen 71 HVHVFSPDGSWL 82 (122)
T ss_pred cceEECCCCCEE
Confidence 467899999753
No 93
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=21.58 E-value=1.4e+02 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC
Q 026627 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD 141 (235)
Q Consensus 104 ~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~ 141 (235)
.-++++.+..++++++.|++.++.+ .++|+||.-
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYSF 77 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRK----RVVLIGYSF 77 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeecC
Confidence 4578999999999999998776543 457788754
No 94
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=21.54 E-value=1.1e+02 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC
Q 026627 180 EEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK 217 (235)
Q Consensus 180 ~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~ 217 (235)
|.+++++|.+++..++..+.++ +.++-|++++..+
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~---g~~v~iaVvd~~G 35 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER---GLPVSIAVVDAGG 35 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT---T---EEEEEETTS
T ss_pred CCcCHHHHHHHHHHHHHHHHHh---CCCeEEEEEECCC
Confidence 3578999999999999988764 3458888899876
No 95
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=21.36 E-value=2.1e+02 Score=17.48 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 026627 170 AKTFLEKRYVEEMELDDAVHTAILTLKE 197 (235)
Q Consensus 170 ~~~~L~~~~~~~~s~~ea~~l~~~~l~~ 197 (235)
...++++.-++++|+++++.+-.++...
T Consensus 8 Le~Iv~~Le~~~~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 8 LEEIVEKLESGELSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4566667777899999999887777653
No 96
>PRK08868 flagellar protein FlaG; Provisional
Probab=21.26 E-value=3.8e+02 Score=20.48 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhccC-----CCCCCcEEEEEEecC--CcEEEcCHHHHHHHHHHc
Q 026627 185 DDAVHTAILTLKEGFEG-----QISEKNIEIGIIGEK--KEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 185 ~ea~~l~~~~l~~~~~~-----~~~~~~iei~~i~~~--~~~~~l~~~ei~~~l~~~ 234 (235)
+++++-+.+.+...... |-..+.+-|.+++++ ..+|.+.++|+-.++.+|
T Consensus 74 ~~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 74 EKMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 34555555555543221 124467889999987 367999999999888765
No 97
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=20.89 E-value=1.9e+02 Score=19.81 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEEec-CCcEEEcCHHHHHHHHH
Q 026627 210 IGIIGE-KKEFRVLTPNEIRDYLA 232 (235)
Q Consensus 210 i~~i~~-~~~~~~l~~~ei~~~l~ 232 (235)
|.+.++ .+.|+.++++++..+..
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG 44 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWG 44 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHH
T ss_pred eEeeccCCCeEEecCHHHHHHHHH
Confidence 678884 46799999999988764
No 98
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=20.42 E-value=41 Score=15.99 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=9.8
Q ss_pred ccccCCCCccchh
Q 026627 10 LTTFSPSGKLVQI 22 (235)
Q Consensus 10 ~~~fsp~Grl~Q~ 22 (235)
...|.|+|+|.+.
T Consensus 5 ~~~yy~nG~l~~~ 17 (22)
T PF07661_consen 5 WKFYYENGKLKSE 17 (22)
T ss_pred EEEEeCCCCEEEE
Confidence 4578999998654
No 99
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=20.24 E-value=2.1e+02 Score=20.15 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCCcEEEEEEecC-C-cEEEcCHHHHHHHHHHc
Q 026627 204 SEKNIEIGIIGEK-K-EFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 204 ~~~~iei~~i~~~-~-~~~~l~~~ei~~~l~~~ 234 (235)
..+.+-|.+++++ + .+|.+.++++-.+..+|
T Consensus 64 ~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 64 ESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp ETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred CCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 3567899999987 3 56999999998887765
No 100
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=20.23 E-value=1.6e+02 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=19.8
Q ss_pred EEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 211 GIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 211 ~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
.++.+||..|+++++|++.+.+.++
T Consensus 33 ~i~lrdG~~h~f~k~ELe~L~~~lp 57 (132)
T PF01886_consen 33 SIILRDGSRHRFDKEELERLAEILP 57 (132)
T ss_pred eEEecCCCEEEEcHHHHHHHHHhCC
Confidence 3456788899999999998877653
No 101
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=20.04 E-value=61 Score=25.72 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCceeEEEecCcEEEEEecChhhHHHHHHHHHH
Q 026627 60 SSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRK 92 (235)
Q Consensus 60 ~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~ 92 (235)
.-.+-|-..++.+++|..|...|.-.|.++++.
T Consensus 54 ~F~~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~ 86 (188)
T cd05781 54 EFVKYVKEYDPDIIVGYNSNAFDWPYLVERARV 86 (188)
T ss_pred HHHHHHHHcCCCEEEecCCCcCcHHHHHHHHHH
Confidence 345556677899999999999999999998764
Done!