Query 026627
Match_columns 235
No_of_seqs 119 out of 1103
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yar_A Proteasome alpha subuni 100.0 1.8E-65 6.2E-70 423.8 27.9 231 1-231 3-233 (233)
2 1iru_B 20S proteasome; cell cy 100.0 6.9E-65 2.3E-69 420.4 28.9 232 3-235 2-233 (233)
3 1ryp_A 20S proteasome; multica 100.0 7.5E-65 2.6E-69 422.6 27.1 231 4-235 1-240 (243)
4 1j2p_A Alpha-ring, proteasome 100.0 2.3E-64 7.8E-69 420.3 29.7 233 1-234 3-236 (246)
5 1iru_E 20S proteasome; cell cy 100.0 1.1E-64 3.9E-69 421.0 26.9 234 1-234 3-241 (241)
6 1iru_F 20S proteasome; cell cy 100.0 2.5E-64 8.6E-69 423.5 26.9 232 1-234 1-236 (263)
7 3h4p_A Proteasome subunit alph 100.0 4.8E-65 1.6E-69 427.6 21.8 234 1-235 7-241 (264)
8 1ryp_C 20S proteasome; multica 100.0 2.5E-63 8.5E-68 413.7 30.7 231 5-235 4-242 (244)
9 1iru_A 20S proteasome; cell cy 100.0 1.3E-63 4.6E-68 415.7 28.8 231 4-234 7-242 (246)
10 1ryp_D 20S proteasome; multica 100.0 7.3E-63 2.5E-67 410.1 30.0 229 5-235 1-235 (241)
11 1iru_C 20S proteasome; cell cy 100.0 7.3E-63 2.5E-67 414.4 29.6 232 3-234 2-240 (261)
12 1ryp_B 20S proteasome; multica 100.0 9E-63 3.1E-67 411.6 29.0 232 3-234 2-250 (250)
13 1ryp_F 20S proteasome; multica 100.0 1.1E-63 3.7E-68 413.2 22.7 227 2-231 1-233 (233)
14 1iru_G 20S proteasome; cell cy 100.0 9.4E-63 3.2E-67 412.2 27.6 233 2-234 3-239 (254)
15 1iru_D 20S proteasome; cell cy 100.0 5.2E-63 1.8E-67 412.5 25.4 227 6-234 3-232 (248)
16 1ryp_E 20S proteasome; multica 100.0 3.6E-62 1.2E-66 406.2 26.9 228 7-234 1-235 (242)
17 1ryp_G 20S proteasome; multica 100.0 5.4E-61 1.9E-65 399.3 28.3 229 4-232 2-236 (244)
18 3nzj_F Proteasome component C1 100.0 5.1E-61 1.8E-65 406.7 27.2 227 3-229 5-238 (288)
19 1q5q_A Proteasome alpha-type s 100.0 7.7E-53 2.6E-57 352.8 21.9 216 10-234 4-235 (259)
20 3mi0_A Proteasome subunit alph 100.0 2.6E-51 8.8E-56 340.8 24.4 213 14-235 8-238 (248)
21 1yar_H Proteasome beta subunit 100.0 1.8E-48 6.3E-53 318.6 25.7 204 27-235 3-208 (217)
22 3h4p_a Proteasome subunit beta 100.0 2.8E-48 9.6E-53 317.9 22.5 199 32-235 1-203 (219)
23 1j2q_H Proteasome beta subunit 100.0 1.3E-47 4.3E-52 310.5 25.5 198 33-235 1-201 (202)
24 2jay_A Proteasome; hydrolase; 100.0 5.9E-47 2E-51 321.3 23.6 228 4-234 23-274 (291)
25 3nzj_K Proteasome component PR 100.0 2.6E-47 8.8E-52 322.7 21.2 217 13-234 50-275 (287)
26 1q5r_H Proteasome beta-type su 100.0 1.9E-46 6.4E-51 318.4 24.0 209 25-235 58-283 (294)
27 1iru_L 20S proteasome; cell cy 100.0 1E-46 3.5E-51 305.6 21.2 198 33-235 1-200 (204)
28 1ryp_L 20S proteasome; multica 100.0 1E-45 3.5E-50 301.4 21.8 197 33-234 1-200 (212)
29 1iru_N 20S proteasome; cell cy 100.0 2.4E-46 8.3E-51 306.5 17.6 201 26-229 2-207 (219)
30 1iru_H 20S proteasome; cell cy 100.0 4.3E-46 1.5E-50 302.1 18.6 195 33-232 1-199 (205)
31 3nzj_H Proteasome component PU 100.0 3.2E-45 1.1E-49 306.3 23.4 206 13-223 9-217 (261)
32 1q5q_H Proteasome beta-type su 100.0 5.5E-45 1.9E-49 301.4 23.7 200 33-234 1-217 (235)
33 1ryp_N 20S proteasome; multica 100.0 3E-46 1E-50 308.6 15.7 203 26-230 2-217 (233)
34 1ryp_H 20S proteasome; multica 100.0 7.7E-45 2.6E-49 294.8 21.2 187 25-217 2-191 (205)
35 3unf_H Proteasome subunit beta 100.0 8.7E-45 3E-49 299.5 20.9 190 33-228 1-192 (234)
36 1ryp_K 20S proteasome; multica 100.0 3.5E-44 1.2E-48 289.3 22.4 189 33-224 2-194 (198)
37 1g0u_M Proteasome component PR 100.0 1.5E-45 5E-50 309.9 14.4 207 22-230 31-250 (266)
38 1iru_M 20S proteasome; cell cy 100.0 2.1E-43 7E-48 288.0 23.7 187 29-220 6-204 (213)
39 1ryp_I 20S proteasome; multica 100.0 2E-43 6.7E-48 289.7 23.1 187 33-224 1-189 (222)
40 1ryp_M 20S proteasome; multica 100.0 5.6E-43 1.9E-47 287.1 21.9 187 29-220 6-213 (222)
41 1iru_K 20S proteasome; cell cy 100.0 1.1E-42 3.6E-47 281.3 22.6 188 33-223 2-192 (201)
42 3unf_N Proteasome subunit beta 100.0 7.9E-44 2.7E-48 287.5 15.8 193 33-232 1-198 (199)
43 1iru_J 20S proteasome; cell cy 100.0 1.2E-42 4.1E-47 281.9 21.8 185 29-217 5-194 (205)
44 1ryp_J 20S proteasome; multica 100.0 3E-42 1E-46 279.3 24.1 184 29-217 5-193 (204)
45 1iru_I 20S proteasome; cell cy 100.0 2E-42 6.9E-47 285.7 22.7 186 33-224 1-188 (234)
46 2z3b_A ATP-dependent protease 100.0 1E-35 3.4E-40 236.4 17.6 168 30-213 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 3.8E-35 1.3E-39 231.3 17.9 165 33-213 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1E-34 3.6E-39 229.4 17.4 166 33-214 1-173 (174)
49 2yxo_A Histidinol phosphatase; 43.7 14 0.00049 29.2 2.9 34 10-43 7-40 (267)
50 4eo3_A Bacterioferritin comigr 43.5 9.8 0.00034 31.7 1.9 42 144-185 103-145 (322)
51 1vd2_A Protein kinase C, IOTA 35.0 99 0.0034 20.5 5.7 49 179-232 23-72 (89)
52 1p65_A Nucleocapsid protein; v 33.0 10 0.00035 23.7 0.2 15 11-25 40-55 (73)
53 3jx9_A Putative phosphoheptose 31.3 19 0.00066 27.1 1.6 31 10-40 81-112 (170)
54 3rj2_X ORF158L protein, putati 29.0 14 0.00048 26.1 0.4 17 5-21 54-70 (138)
55 3hvz_A Uncharacterized protein 25.6 30 0.001 22.4 1.6 37 6-42 4-48 (78)
56 2hc5_A ORF 99, hypothetical pr 24.7 1.4E+02 0.0047 20.9 5.0 31 204-234 65-97 (117)
57 2kxe_A DNA polymerase II small 23.0 88 0.003 19.6 3.2 26 168-193 20-46 (75)
58 1m65_A Hypothetical protein YC 22.6 46 0.0016 25.8 2.4 34 10-43 9-42 (245)
59 4h62_V Mediator of RNA polymer 22.3 55 0.0019 16.5 1.8 16 218-233 5-20 (31)
60 2i7n_A Pantothenate kinase 1; 21.7 1.2E+02 0.0042 25.6 5.0 56 135-194 178-233 (360)
61 3o0f_A Putative metal-dependen 21.2 42 0.0014 27.7 2.0 38 5-43 14-52 (301)
62 2yb1_A Amidohydrolase; HET: AM 20.5 57 0.0019 26.5 2.6 37 6-43 4-41 (292)
No 1
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.8e-65 Score=423.81 Aligned_cols=231 Identities=39% Similarity=0.620 Sum_probs=215.1
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|++++||+++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (233)
T 1yar_A 3 QGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLV 82 (233)
T ss_dssp ----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBH
T ss_pred cccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCH
Confidence 67789999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+|++.+.++++.+++.|+++++++++++.+++++++++|.++++.+.|||++++|+||||++||+||.+||.|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~ 162 (233)
T 1yar_A 83 ADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKA 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeE
Confidence 99999999999999999999999999999999999999999999889999999999999998999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHH
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYL 231 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l 231 (235)
+|+|+|+++++++|++.|+++|+++||++++++||+.+.++|.++.+++|++|++++++++++++||+++|
T Consensus 163 ~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 163 TAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 99999999999999999999999999999999999999999888999999999998779999999998763
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=6.9e-65 Score=420.36 Aligned_cols=232 Identities=67% Similarity=1.066 Sum_probs=225.7
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
+++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 68999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEe
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a 162 (235)
++.+.++++.+++.|+++++.+++++.+++++++++|.|+++.+.|||++++|+||||++||+||.+||.|++.++++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~a 161 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999988999999999999998899999999999999999999
Q ss_pred eCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 163 ~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
+|+|+++++++|++.|+++|+++||++++++||+.+.++|.++.+++|++|++++ +++++++||+++++.++
T Consensus 162 iG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 162 MGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG-FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE-EEECCHHHHHHHHTTCC
T ss_pred ECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC-EEECCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998889999999999985 99999999999998764
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=7.5e-65 Score=422.57 Aligned_cols=231 Identities=29% Similarity=0.521 Sum_probs=224.3
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcC-CCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~-G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
++||+++|+|||||||+|||||.||+++ |+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 5899999999999999999999999999 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEE
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~ 161 (235)
++.+.+.++.+++.|+++++++++++.+++++++++|.|+++++.|||+|++||||||+ +||+||.+||.|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999997 78999999999999999999
Q ss_pred eeCCCchHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 162 AMGKNVSNAKTFLEKRYVE-------EMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~-------~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
|+|++++.++++|++.|++ +|+++||++++++||..+.++|.++.+++|++|++++ +++++++||+++++.+
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g-~~~l~~~ei~~~~~~~ 239 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTLSAENIEERLVAI 239 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE-EEECCHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-eEECCHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999998889999999999986 9999999999999886
Q ss_pred C
Q 026627 235 E 235 (235)
Q Consensus 235 ~ 235 (235)
+
T Consensus 240 ~ 240 (243)
T 1ryp_A 240 A 240 (243)
T ss_dssp T
T ss_pred h
Confidence 4
No 4
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.3e-64 Score=420.32 Aligned_cols=233 Identities=35% Similarity=0.658 Sum_probs=224.4
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
||+++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..
T Consensus 3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECH
T ss_pred ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEcc
Confidence 67899999999999999999999999999999999999999999999999999888778899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+|++.+.++++.+++.|+++++.+++++.+++++++.+|.|+++.+.|||++++|+|||| +||+||.+||.|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~ 161 (246)
T 1j2p_A 83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKA 161 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeE
Confidence 999999999999999999999999999999999999999999998899999999999999 8999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEe-cCCcEEEcCHHHHHHHHHHc
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIG-EKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~-~~~~~~~l~~~ei~~~l~~~ 234 (235)
+|+|+|+++++++|++.|+++|+++||++++++||..+.++..++.+++|++|+ +++++++++++||+++++.+
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~ 236 (246)
T 1j2p_A 162 TAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERA 236 (246)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985589999999999 76689999999999998865
No 5
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.1e-64 Score=420.99 Aligned_cols=234 Identities=32% Similarity=0.616 Sum_probs=221.3
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|++++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (241)
T 1iru_E 3 LTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLI 82 (241)
T ss_dssp -----CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECH
T ss_pred CccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeCh
Confidence 56789999999999999999999999999999999999999999999999999877668899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC-----cccceeEEEEEEEeCCCCeEEEECCCCcE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG-----VRPFGVSLLVAGYDDKGPQLYQVDPSGSY 155 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~-----~rP~~~~~il~G~d~~gp~Ly~id~~G~~ 155 (235)
+|++.+.+.++.+++.|+.+++++++++.+++++++++|.|+++.+ .|||++++|+||||++||+||.+||.|++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~ 162 (241)
T 1iru_E 83 ADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF 162 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE
Confidence 9999999999999999999999999999999999999999998887 89999999999999888999999999999
Q ss_pred EeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 156 FSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 156 ~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
.+++++|+|+|+++++++|++.|+++|+++||++++++||..+.++..++.+++|++|++++.+++++++||+++++++
T Consensus 163 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 163 VQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 241 (241)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHHHTTC
T ss_pred EecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998668999999999999779999999999999764
No 6
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.5e-64 Score=423.53 Aligned_cols=232 Identities=33% Similarity=0.599 Sum_probs=221.7
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|++++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++||+|+++|..
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~ 78 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLT 78 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECH
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCH
Confidence 899999999999999999999999999999999999999999999999999998864 478999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+|++.+.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||||||++||+||.+||.|++.++++
T Consensus 79 aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~ 158 (263)
T 1iru_F 79 ADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRA 158 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeE
Confidence 99999999999999999999999999999999999999999999889999999999999998999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccC--CCCHHHHHHHHHHHHHhhccCC--CCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 161 SAMGKNVSNAKTFLEKRYVE--EMELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~--~~s~~ea~~l~~~~l~~~~~~~--~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
+|+|+|+++++++|++.|++ +|+++||++++++||+.+.++| .++.+++|++|++++++++++++||++++..+
T Consensus 159 ~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 159 MSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236 (263)
T ss_dssp EEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTC
T ss_pred EEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999999988 58999999999998679999999999999876
No 7
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.8e-65 Score=427.63 Aligned_cols=234 Identities=36% Similarity=0.631 Sum_probs=218.2
Q ss_pred CCCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecCh
Q 026627 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMG 80 (235)
Q Consensus 1 ~~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~ 80 (235)
|..++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.+++++..++.+||++|++||+|+++|..
T Consensus 7 ~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~ 86 (264)
T 3h4p_A 7 VPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLV 86 (264)
T ss_dssp ---------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECS
T ss_pred CCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccch
Confidence 44688999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeE
Q 026627 81 PDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 81 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~ 160 (235)
+|++.+.+.++.+++.|++.++.+++++.++++++.++|.|+++++.|||+|++||||||++||+||.+||.|++.++++
T Consensus 87 aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~ 166 (264)
T 3h4p_A 87 ADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKA 166 (264)
T ss_dssp HHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESE
T ss_pred HHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCe
Confidence 99999999999999999999999999999999999999999999899999999999999998999999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecC-CcEEEcCHHHHHHHHHHcC
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEK-KEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~-~~~~~l~~~ei~~~l~~~~ 235 (235)
+|+|+|+++++++|++.|+++|+++||++++++||+.+.++ .++.+++|++|+++ .+|++|+++||+++++.++
T Consensus 167 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~ 241 (264)
T 3h4p_A 167 TAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVK 241 (264)
T ss_dssp EEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTT
T ss_pred EEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 89999999999986 4799999999999987763
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.5e-63 Score=413.70 Aligned_cols=231 Identities=39% Similarity=0.686 Sum_probs=223.4
Q ss_pred CCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccc-cCCceeEEEecCcEEEEEecChhhH
Q 026627 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVD-ESSVHKIQSLTPNIGVVYSGMGPDF 83 (235)
Q Consensus 5 ~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~-~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (235)
+||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++|+++|..+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 83 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence 899999999999999999999999999999999999999999999999987766 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEe-CCCCeEEEECCCCcEEeeeEEe
Q 026627 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASA 162 (235)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~gp~Ly~id~~G~~~~~~~~a 162 (235)
+.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|+|||| ++||+||.+||.|++.+++++|
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 163 (244)
T 1ryp_C 84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAIS 163 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEE
Confidence 999999999999999999999999999999999999999998899999999999999 6889999999999999999999
Q ss_pred eCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccC-CCCCCcEEEEEEe--cCCc---EEEcCHHHHHHHHHHcC
Q 026627 163 MGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEG-QISEKNIEIGIIG--EKKE---FRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 163 ~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~-~~~~~~iei~~i~--~~~~---~~~l~~~ei~~~l~~~~ 235 (235)
+|+|+++++++|++.|+++|+++||++++++||+.+.++ +.++.+++|++|+ +++. +++|+++||+++++.++
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 164 VGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHT
T ss_pred ECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998 5789999999999 8865 99999999999999875
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.3e-63 Score=415.74 Aligned_cols=231 Identities=35% Similarity=0.610 Sum_probs=223.9
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcC-CCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~-G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
++||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 5899999999999999999999999999 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEE
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~ 161 (235)
++.+.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||||||+ +||+||.+||.|++.+++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 166 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKAT 166 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEE
Confidence 99999999999999999999999999999999999999999888999999999999997 78999999999999999999
Q ss_pred eeCCCchHHHHHHHHhccC--CCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCc-EEEcCHHHHHHHHHHc
Q 026627 162 AMGKNVSNAKTFLEKRYVE--EMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKE-FRVLTPNEIRDYLAEV 234 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~--~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~-~~~l~~~ei~~~l~~~ 234 (235)
|+|+|+++++++|++.|++ +|+++||++++++||+.+.++|.++.+++|++|++++. |++++++||+++++.+
T Consensus 167 aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~ 242 (246)
T 1iru_A 167 AAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL 242 (246)
T ss_dssp EEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999888899999999999864 8999999999999876
No 10
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=7.3e-63 Score=410.10 Aligned_cols=229 Identities=37% Similarity=0.652 Sum_probs=220.2
Q ss_pred CCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCcccc-CCceeEEEecCcEEEEEecChhhH
Q 026627 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMGPDF 83 (235)
Q Consensus 5 ~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~~D~ 83 (235)
+||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|+|.+++++.. ++.+||++|++|++|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 6999999999999999999999999999999999999999999999999876554 489999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC--CCCeEEEECCCCcEEeeeEE
Q 026627 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~gp~Ly~id~~G~~~~~~~~ 161 (235)
+.+.+.++.+++.|+++++++++++.+++++++++|.++++++.|||++++||||||+ +||+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 9999999999999999999999999999999999999999988999999999999998 78999999999999999999
Q ss_pred eeCCCchHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 162 AMGKNVSNAKTFLEKRY---VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~---~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
|+|+|+++++++|++.| +++|+++||++++++||..+.+ .++.+++|++|++++++++++++||+++++.++
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQIE 235 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999999999887 789999999999987799999999999998764
No 11
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=7.3e-63 Score=414.43 Aligned_cols=232 Identities=39% Similarity=0.615 Sum_probs=221.2
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCcccc-CCceeEEEecCcEEEEEecChh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE-SSVHKIQSLTPNIGVVYSGMGP 81 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~-~~~~KI~~i~~~i~~~~sG~~~ 81 (235)
.++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++... ++.+||++|++|++|+++|..+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~a 81 (261)
T 1iru_C 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS 81 (261)
T ss_dssp CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred CCccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHH
Confidence 459999999999999999999999999999999999999999999999999866544 4599999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeE
Q 026627 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~ 160 (235)
|++.+.++++.+++.|+++++.+++++.+++++++++|.+++..+.|||++++||||||+ +||+||.+||.|++.++++
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (261)
T 1iru_C 82 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKA 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeee
Confidence 999999999999999999999999999999999999999999988999999999999995 7899999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCc---EEEcCHHHHHHHHHHc
Q 026627 161 SAMGKNVSNAKTFLEKRYVE-EMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKE---FRVLTPNEIRDYLAEV 234 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~-~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~---~~~l~~~ei~~~l~~~ 234 (235)
+|+|+|+++++++|++.|++ +|+++||++++++||..+.++|. ++.+++|++|+++++ |++|+++||++++..+
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~ 240 (261)
T 1iru_C 162 TCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 240 (261)
T ss_dssp EEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999874 889999999999863 8999999999999876
No 12
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9e-63 Score=411.59 Aligned_cols=232 Identities=63% Similarity=0.939 Sum_probs=222.7
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
.++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 35999999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeE
Q 026627 83 FRVLVRKSRKQAEQ-YHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 83 ~~~l~~~~~~~~~~-~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~ 160 (235)
++.+.++++.+++. |+..++.+++++.+++.++++++.+++..++|||++++|+||||+ +||+||.+||.|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 161 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKA 161 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeece
Confidence 99999999999999 999999999999999999999999999888999999999999997 6899999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecC---------------CcEEEcCHH
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEK---------------KEFRVLTPN 225 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~---------------~~~~~l~~~ 225 (235)
+|+|+|+++++++|++.|+++|+++||++++++||+.+.+++.++.+++|++|+++ ++|++|+++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (250)
T 1ryp_B 162 TAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQ 241 (250)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHH
T ss_pred eEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCHH
Confidence 99999999999999999999999999999999999999998788999999999985 259999999
Q ss_pred HHHHHHHHc
Q 026627 226 EIRDYLAEV 234 (235)
Q Consensus 226 ei~~~l~~~ 234 (235)
||+++++.+
T Consensus 242 ei~~~l~~~ 250 (250)
T 1ryp_B 242 EINDRLEAL 250 (250)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhC
Confidence 999999764
No 13
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.1e-63 Score=413.15 Aligned_cols=227 Identities=28% Similarity=0.488 Sum_probs=217.5
Q ss_pred CCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChh
Q 026627 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (235)
Q Consensus 2 ~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (235)
|+++||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|..+
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~a 78 (233)
T 1ryp_F 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAP 78 (233)
T ss_dssp CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHH
T ss_pred CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechH
Confidence 56789999999999999999999999999999999999999999999999998865 4789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEE
Q 026627 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKAS 161 (235)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~ 161 (235)
|++.+.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|+||||++||+||.+||.|++.+++++
T Consensus 79 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 79 DARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999998899999999999999989999999999999999999
Q ss_pred eeCCCchHHHHHHHHhccC--CC--CHHHHHHHHHHHHHhhccCC--CCCCcEEEEEEecCCcEEEcCHHHHHHHH
Q 026627 162 AMGKNVSNAKTFLEKRYVE--EM--ELDDAVHTAILTLKEGFEGQ--ISEKNIEIGIIGEKKEFRVLTPNEIRDYL 231 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~--~~--s~~ea~~l~~~~l~~~~~~~--~~~~~iei~~i~~~~~~~~l~~~ei~~~l 231 (235)
|+|+|++.++++|++.|++ +| +++||+++++++|+.+. +| .++.+++|++|+++++|++++++||+++|
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 9999999999999999998 99 99999999999999999 55 48999999999998679999999998763
No 14
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=9.4e-63 Score=412.22 Aligned_cols=233 Identities=28% Similarity=0.463 Sum_probs=222.3
Q ss_pred CCCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChh
Q 026627 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGP 81 (235)
Q Consensus 2 ~~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~ 81 (235)
+.++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.+++++..++.+||++|++||+|+++|..+
T Consensus 3 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 82 (254)
T 1iru_G 3 IGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 82 (254)
T ss_dssp CCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHH
T ss_pred cccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChH
Confidence 35789999999999999999999999999999999999999999999999998766668899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEe-CCCCeEEEECCCCcEEeeeE
Q 026627 82 DFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKA 160 (235)
Q Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~gp~Ly~id~~G~~~~~~~ 160 (235)
|++.+.+.++.+++.|+++++++++++.+++++++++|.|++++++|||++++|||||| ++||+||.+||.|++.++++
T Consensus 83 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 162 (254)
T 1iru_G 83 DARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWG 162 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeee
Confidence 99999999999999999999999999999999999999999998899999999999999 68899999999999999999
Q ss_pred EeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecC--CcEEEcCHHHHHHHHHHc
Q 026627 161 SAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEK--KEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 161 ~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~--~~~~~l~~~ei~~~l~~~ 234 (235)
+|+|+|+++++++|++.|+++|+++||++++++||+.+.+++. ++.+++|++|+++ ++++++++++++++++..
T Consensus 163 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~ 239 (254)
T 1iru_G 163 CAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYA 239 (254)
T ss_dssp EEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988875 7889999999987 459999999999998753
No 15
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=5.2e-63 Score=412.51 Aligned_cols=227 Identities=37% Similarity=0.677 Sum_probs=220.0
Q ss_pred CCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
||+++|+|||||||+|||||+||+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEe-CCCCeEEEECCCCcEEeeeEEeeC
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMG 164 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~gp~Ly~id~~G~~~~~~~~a~G 164 (235)
+.+.++.+++.|+++++++++++.+++++++++|.|+++++.|||++++|||||| ++||+||.+||.|++.+++++++|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 9999999999999999999999999999999999999998899999999999999 688999999999999999999999
Q ss_pred CCchHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 165 KNVSNAKTFLEKRYVEEM--ELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 165 ~~s~~~~~~L~~~~~~~~--s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
+++++++++|++.|+++| +++||++++++||+.+.+ .++.+++|++|++++++++++++||+++++.+
T Consensus 163 ~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~ 232 (248)
T 1iru_D 163 RGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 232 (248)
T ss_dssp TTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCEECCCHHHHHHHTTTT
T ss_pred CCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHH
Confidence 999999999999999999 999999999999999887 57899999999998779999999999998765
No 16
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.6e-62 Score=406.19 Aligned_cols=228 Identities=31% Similarity=0.560 Sum_probs=220.0
Q ss_pred CCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHHH
Q 026627 7 SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVL 86 (235)
Q Consensus 7 d~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l 86 (235)
|+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78999999999999999999999999999999999999999999999877667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCC------cccceeEEEEEEEe-CCCCeEEEECCCCcEEeee
Q 026627 87 VRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGG------VRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWK 159 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~------~rP~~~~~il~G~d-~~gp~Ly~id~~G~~~~~~ 159 (235)
.++++.+++.|+++++++++++.+++++++++|.|+++.+ .|||++++|+|||| ++||+||.+||.|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 9999999999999999999999999999999999999888 89999999999999 6789999999999999999
Q ss_pred EEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 160 ASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 160 ~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
++|+|+|+++++++|++.|+++|+++||++++++||+.+.+++.++.+++|++|++++.+++++++||+++++.+
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~ 235 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKEL 235 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998668999999999998779999999999999875
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=5.4e-61 Score=399.34 Aligned_cols=229 Identities=36% Similarity=0.552 Sum_probs=215.8
Q ss_pred CCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhH
Q 026627 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDF 83 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~ 83 (235)
++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 68999999999999999999999999999999999999999999999999876666666999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEee
Q 026627 84 RVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAM 163 (235)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~ 163 (235)
+.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||++||+||.+||.|++.+++++|+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 161 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAAT 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEE
Confidence 99999999999999999999999999999999999999998889999999999999998999999999999999999999
Q ss_pred CCCchHHHHHHHHh---ccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEec-C-CcEEEcCHHHHHHHHH
Q 026627 164 GKNVSNAKTFLEKR---YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGE-K-KEFRVLTPNEIRDYLA 232 (235)
Q Consensus 164 G~~s~~~~~~L~~~---~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~-~-~~~~~l~~~ei~~~l~ 232 (235)
|+|+++++++|++. |+++|+++||++++++||+.+.+++. ++.+++|++|++ + ++++++.++++.+..+
T Consensus 162 G~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~ 236 (244)
T 1ryp_G 162 GKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 236 (244)
T ss_dssp STTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHH
T ss_pred CCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHH
Confidence 99999999999997 99999999999999999999999886 789999999997 1 2588888888766544
No 18
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=5.1e-61 Score=406.74 Aligned_cols=227 Identities=36% Similarity=0.568 Sum_probs=213.2
Q ss_pred CCCCCCcccccCCCCccchhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhh
Q 026627 3 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 82 (235)
Q Consensus 3 ~~~yd~~~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D 82 (235)
.++||+++|+|||||||+|||||.||+++|+|+|||+++||||||+|+|.+++++..++.+||++|++||+|+++|..+|
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD 84 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 84 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHH
Confidence 68999999999999999999999999999999999999999999999999987766668899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEe
Q 026627 83 FRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASA 162 (235)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a 162 (235)
++.|.+.++.+++.|+++++++++++.+++++++++|.|+++.+.|||+|++||||||++||+||.+||.|++.+++++|
T Consensus 85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 164 (288)
T 3nzj_F 85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 164 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEE
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eCCCchHHHHHHHHh---ccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEec-C-CcEE-EcCHHHHHH
Q 026627 163 MGKNVSNAKTFLEKR---YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGE-K-KEFR-VLTPNEIRD 229 (235)
Q Consensus 163 ~G~~s~~~~~~L~~~---~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~-~-~~~~-~l~~~ei~~ 229 (235)
+|++++.++++|++. |+++|+++||++++++||..+.+++. ++..++|++|++ + ++++ .++.+++++
T Consensus 165 iGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~ 238 (288)
T 3nzj_F 165 TGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQE 238 (288)
T ss_dssp ESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHH
T ss_pred EcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHH
Confidence 999999999999999 99999999999999999999999864 788999999999 3 4454 555555443
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=7.7e-53 Score=352.83 Aligned_cols=216 Identities=21% Similarity=0.338 Sum_probs=196.4
Q ss_pred ccccCCCCcc-chhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHHHHH
Q 026627 10 LTTFSPSGKL-VQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVR 88 (235)
Q Consensus 10 ~~~fsp~Grl-~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~ 88 (235)
+..|||||+| .|+|||.+|+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..+|++.|.+
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 4468999999 59999999999999999999999999999998 367899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHH-HHHHHhhcCCcccceeEEEEEEEe----CCCCeEEEECCCCcEE-eeeEE
Q 026627 89 KSRKQAEQYHRLYK-EPIPVTQLVRETAA-VMQEFTQSGGVRPFGVSLLVAGYD----DKGPQLYQVDPSGSYF-SWKAS 161 (235)
Q Consensus 89 ~~~~~~~~~~~~~~-~~i~~~~l~~~l~~-~~~~~~~~~~~rP~~~~~il~G~d----~~gp~Ly~id~~G~~~-~~~~~ 161 (235)
.++.+++.+++.++ .+++++.+++++++ +.|.|+. +.|||+|++|||||| ++||+||.+||.|++. +++++
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ 154 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFV 154 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEE
Confidence 99999999999998 49999999999999 6677773 579999999999999 6889999999999999 78999
Q ss_pred eeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-----cCCCCCCcEEEEEEecCC---cEEEcCHHHHHHHHHH
Q 026627 162 AMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF-----EGQISEKNIEIGIIGEKK---EFRVLTPNEIRDYLAE 233 (235)
Q Consensus 162 a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~-----~~~~~~~~iei~~i~~~~---~~~~l~~~ei~~~l~~ 233 (235)
++|++++.++++|++.|+++|+++||++++++||+.+. ++|+++.+++|++|++++ +|++++++||++++.+
T Consensus 155 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~ 234 (259)
T 1q5q_A 155 VMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA 234 (259)
T ss_dssp EESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred EECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 788889999999999985 7999999999998765
Q ss_pred c
Q 026627 234 V 234 (235)
Q Consensus 234 ~ 234 (235)
+
T Consensus 235 ~ 235 (259)
T 1q5q_A 235 E 235 (259)
T ss_dssp C
T ss_pred h
Confidence 5
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2.6e-51 Score=340.81 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=193.2
Q ss_pred CCCCcc-chhhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCCCccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHH
Q 026627 14 SPSGKL-VQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRK 92 (235)
Q Consensus 14 sp~Grl-~Q~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~ 92 (235)
|||+-+ .++|||.||+++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|..+|++.+.+.++.
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~ 80 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQ 80 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHH
Confidence 677777 58999999999999999999999999999998 3578999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCCCHHHHHHHHH-HHHHHHhhcCCcccceeEEEEEEEeC----CCCeEEEECCCCcEEe-eeEEeeCC
Q 026627 93 QAEQYHRLYK-EPIPVTQLVRETA-AVMQEFTQSGGVRPFGVSLLVAGYDD----KGPQLYQVDPSGSYFS-WKASAMGK 165 (235)
Q Consensus 93 ~~~~~~~~~~-~~i~~~~l~~~l~-~~~~~~~~~~~~rP~~~~~il~G~d~----~gp~Ly~id~~G~~~~-~~~~a~G~ 165 (235)
+++.|++.++ .+++++.|+++++ .+.|.|++ +.|||+|++||||||+ +||+||.+||+|++.+ +++.|+|+
T Consensus 81 ~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gs 158 (248)
T 3mi0_A 81 FADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGG 158 (248)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECc
Confidence 9999999999 9999999999999 66788887 5899999999999998 7899999999999995 99999999
Q ss_pred CchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-------cCCCCCCcEEEEEEecCC---cEEEcCHHHHHHHHHHcC
Q 026627 166 NVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGF-------EGQISEKNIEIGIIGEKK---EFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 166 ~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~-------~~~~~~~~iei~~i~~~~---~~~~l~~~ei~~~l~~~~ 235 (235)
|++.++++|++.|+++|+++||++++++||+.+. ++++++.+++|++|++++ .|++|+++||+++++.++
T Consensus 159 gs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 159 TTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp CHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998 566789999999999985 499999999999988753
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.8e-48 Score=318.63 Aligned_cols=204 Identities=22% Similarity=0.392 Sum_probs=189.3
Q ss_pred HhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 026627 27 TAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPI 105 (235)
Q Consensus 27 ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 105 (235)
.++.+|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999986 788889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHH
Q 026627 106 PVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELD 185 (235)
Q Consensus 106 ~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ 185 (235)
+++.+++++++.+|.++ .|||++++|+|||| +||+||.+||.|++.+++++|+|+|+++++++|++.|+++|+++
T Consensus 83 ~v~~la~~l~~~~~~~r----~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~e 157 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK----YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVD 157 (217)
T ss_dssp CHHHHHHHHHHHHHHTT----TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred CHHHHHHHHHHHHHhcC----CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHH
Confidence 99999999999998753 78999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 186 DAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 186 ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
||++++++||+.+.++|. ++.+++|++|+++.++++++++||++++++++
T Consensus 158 ea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 158 EGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHH
Confidence 999999999999999985 88999999999944699999999999998764
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-48 Score=317.91 Aligned_cols=199 Identities=23% Similarity=0.383 Sum_probs=190.0
Q ss_pred CCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026627 32 GQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (235)
Q Consensus 32 G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (235)
|+|+|||+++||||||+|+|.++ .++..++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++.+++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999986 57778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeee-EEeeCCCchHHHHHHHHhccCCCCHHHHH
Q 026627 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWK-ASAMGKNVSNAKTFLEKRYVEEMELDDAV 188 (235)
Q Consensus 111 ~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~-~~a~G~~s~~~~~~L~~~~~~~~s~~ea~ 188 (235)
++++++++|.++ .|||++++||||||+ +||+||.+||.|++.+++ +.|+|+|+++++++|++.|+++|+++||+
T Consensus 81 a~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 81 ATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999998874 689999999999998 789999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 189 HTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 189 ~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
+++++||..+.++|. ++.+++|++|+++ ++++++++||+++|++++
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~-g~~~l~~~ei~~~l~~~~ 203 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKD-GVKIFEDEEIEKILDSMK 203 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETT-EEEECCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCC-CeEEcCHHHHHHHHHHhh
Confidence 999999999999985 8899999999998 599999999999999875
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.3e-47 Score=310.46 Aligned_cols=198 Identities=26% Similarity=0.424 Sum_probs=189.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999986 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeee-EEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWK-ASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~-~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++.+|.++ .|||++++|+||||++||+||.+||.|++.+++ ++|+|+|+++++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~r----~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYR----YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTT----TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhC----CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999998753 789999999999999899999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
+++||+.+.++|. ++.+++|++|+++ ++++++++|+++++++++
T Consensus 157 a~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 157 AVRAIYSAMKRDSASGDGIDVVKITED-EFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHTTCTTSCSCEEEEEECSS-CEEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEEeCC-CeEEeCHHHHHHHHHHhh
Confidence 9999999999985 8899999999998 599999999999998875
No 24
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=5.9e-47 Score=321.25 Aligned_cols=228 Identities=17% Similarity=0.189 Sum_probs=175.1
Q ss_pred CCCCCcccccCCCCcc-----ch--hhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEE
Q 026627 4 SQYSFSLTTFSPSGKL-----VQ--IEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVV 75 (235)
Q Consensus 4 ~~yd~~~~~fsp~Grl-----~Q--~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~ 75 (235)
++|+..+...+||..- +| +|||.+ +.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 6777778888887543 33 689999 99999999999999999999999997 477788999999999999999
Q ss_pred EecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCC-C-----CeEEEE
Q 026627 76 YSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-G-----PQLYQV 149 (235)
Q Consensus 76 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g-----p~Ly~i 149 (235)
++|..+|++.+.+.++.+++.|++.++.+++++.+++.+++++|.+++ ..+|||+|++||||||++ + |+||.+
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~i 180 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999998875 347899999999999985 4 899999
Q ss_pred CCCCcEE--eeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCCCCCcE--------EEEEEecCCcE
Q 026627 150 DPSGSYF--SWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISEKNI--------EIGIIGEKKEF 219 (235)
Q Consensus 150 d~~G~~~--~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~i--------ei~~i~~~~~~ 219 (235)
||.|++. ++++.|+|+|+++++++|++.|+++|+++||++++++||+.+.++|...+++ +|++|+++ ++
T Consensus 181 Dp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~d-g~ 259 (291)
T 2jay_A 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD-GA 259 (291)
T ss_dssp CTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETT-EE
T ss_pred CCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECC-Ce
Confidence 9999999 7899999999999999999999999999999999999999999998743344 69999998 59
Q ss_pred EEcCHHHHHHHHHHc
Q 026627 220 RVLTPNEIRDYLAEV 234 (235)
Q Consensus 220 ~~l~~~ei~~~l~~~ 234 (235)
++++++||+++++.+
T Consensus 260 ~~l~~~ei~~~~~~~ 274 (291)
T 2jay_A 260 VDVPESRIAELARAI 274 (291)
T ss_dssp EECCHHHHHHHHHHC
T ss_pred EEcCHHHHHHHHHHH
Confidence 999999999999876
No 25
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.6e-47 Score=322.66 Aligned_cols=217 Identities=17% Similarity=0.261 Sum_probs=188.3
Q ss_pred cCCCCccchhh------cHHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHH
Q 026627 13 FSPSGKLVQIE------HALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRV 85 (235)
Q Consensus 13 fsp~Grl~Q~e------ya~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 85 (235)
=||+.-|-+.. ++.+++.+|+|+|||+++||||||+|+|.++ +++..++.+||++|++|++|+++|..+|++.
T Consensus 50 ~~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~ 129 (287)
T 3nzj_K 50 ASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQF 129 (287)
T ss_dssp --------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHH
T ss_pred CCHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHH
Confidence 46777665442 7899999999999999999999999999986 7788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEe-CCCCeEEEECCCCcEEeeeEEeeC
Q 026627 86 LVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMG 164 (235)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~gp~Ly~id~~G~~~~~~~~a~G 164 (235)
+.++++.+++.|+++++++++++.+++++++++|.+++ +||++++|||||| ++||+||.+||.|++.++++.|+|
T Consensus 130 l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiG 205 (287)
T 3nzj_K 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVG 205 (287)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEES
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEe
Confidence 99999999999999999999999999999999998874 4999999999999 578999999999999999999999
Q ss_pred CCchHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 165 KNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 165 ~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
+|+++++++|++.|+++|+++||++++++||..+.++|. ++.+++|++|+++ +|++++++||++++.++
T Consensus 206 sgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd-g~~~l~~~ev~~~l~~~ 275 (287)
T 3nzj_K 206 SGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED-GWIYHGNHDVGELFWKV 275 (287)
T ss_dssp TTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT-EEEEEEEEEHHHHHHHH
T ss_pred cchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC-CEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 8899999999998 59999999999987654
No 26
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.9e-46 Score=318.40 Aligned_cols=209 Identities=16% Similarity=0.190 Sum_probs=195.0
Q ss_pred HHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC
Q 026627 25 ALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE 103 (235)
Q Consensus 25 a~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 103 (235)
|.||+++|+|+|||+++||||||+|+|.++ +++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 899999999999999999999999999996 7888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCC-C-----CeEEEECCCCcEEee--eEEeeCCCchHHHHHHH
Q 026627 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-G-----PQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLE 175 (235)
Q Consensus 104 ~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g-----p~Ly~id~~G~~~~~--~~~a~G~~s~~~~~~L~ 175 (235)
+++++.+++.+++++|.+++.. +|||++++||||||++ | |+||.+||.|++.++ +++|+|+|+++++++|+
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999988754 7999999999999985 6 999999999999999 89999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhccCCC-CCC--cE-----EEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 176 KRYVEEMELDDAVHTAILTLKEGFEGQI-SEK--NI-----EIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 176 ~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~--~i-----ei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
+.|+++|+++||++++++||+.+.++|. ++. .+ +|++|+++ ++++++++|+++++++++
T Consensus 217 ~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~-g~~~l~~~ei~~~l~~i~ 283 (294)
T 1q5r_H 217 KIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA-GAVHVSEETTSELARRIV 283 (294)
T ss_dssp HHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT-EEEECCHHHHHHHHHHHC
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECC-CEEEcCHHHHHHHHHHHH
Confidence 9999999999999999999999999986 443 25 99999987 599999999999998763
No 27
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1e-46 Score=305.56 Aligned_cols=198 Identities=19% Similarity=0.321 Sum_probs=189.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+||++++||||||+|+|.++ +++..++.+||++|++|++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999987 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++.+|.+++ +||++++|+||||++||+||.+||.|++.+++++|+|+|+++++++|++.|+++|+++||++++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~ 156 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA 156 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 999999998863 5899999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHcC
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEVE 235 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~~ 235 (235)
++||+.+.++|. ++.+++|++|+++ ++++++++|++++++.++
T Consensus 157 ~~al~~~~~rd~~s~~~i~v~vi~~~-g~~~l~~~ei~~~~~~~~ 200 (204)
T 1iru_L 157 RRAIYQATYRDAYSGGAVNLYHVRED-GWIRVSSDNVADLHEKYS 200 (204)
T ss_dssp HHHHHHHHHHBTTCCSEEEEEEECSS-CEEEEEEEEHHHHHHHHT
T ss_pred HHHHHHHHHhCccCCCceEEEEEeCC-ceEEeCHHHHHHHHHHhc
Confidence 999999999885 8999999999987 599999999999998764
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1e-45 Score=301.39 Aligned_cols=197 Identities=16% Similarity=0.269 Sum_probs=187.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999987 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEe-CCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d-~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++.+|.+++ .||++++|+|||| ++||+||.+||.|++.+++++|+|+|+++++++|++.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~----~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTT----SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCC----CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 999999999985 3899999999999 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
+++||+.+.++|. ++.+++|++|+++ ++++++++|+++++.++
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~-g~~~~~~~ei~~~~~~~ 200 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTED-GWIYHGNHDVGELFWKV 200 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETT-EEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCC-ceEEECHHHHHHHHHHH
Confidence 9999999999885 8999999999987 59999999999998764
No 29
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.4e-46 Score=306.51 Aligned_cols=201 Identities=17% Similarity=0.144 Sum_probs=188.8
Q ss_pred HHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-HhCC
Q 026627 26 LTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHR-LYKE 103 (235)
Q Consensus 26 ~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 103 (235)
++|+.+|+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.+.++.+++.|++ +++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999999986 788888999999999999999999999999999999999999998 8999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccC--C
Q 026627 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVE--E 181 (235)
Q Consensus 104 ~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~--~ 181 (235)
+++++.+++++++.++.+ +.+.|||++++|+||+|++||+||.+||.|++.+++++++|+|+++++++|++.|++ +
T Consensus 82 ~~~v~~la~~l~~~ly~~--r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSR--RSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCHHHHHHHHHHHHHHh--cccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 999999999999998754 345899999999999999899999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHH
Q 026627 182 MELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRD 229 (235)
Q Consensus 182 ~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~ 229 (235)
|+++||++++++||..+.++|. ++.+++|++|++++ ++.++++||+.
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~ 207 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTET 207 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccc
Confidence 9999999999999999999985 89999999999974 99999888754
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=4.3e-46 Score=302.14 Aligned_cols=195 Identities=18% Similarity=0.237 Sum_probs=185.2
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999975 88888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++.+|.+++ ||++++|+||||+ +||+||.+||.|++.+++++++|+|+++++++|++.|+++|+++||+++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l 155 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQF 155 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999998874 9999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCCc-EEEcCHHHHHHHHH
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKE-FRVLTPNEIRDYLA 232 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~~-~~~l~~~ei~~~l~ 232 (235)
+++||+.+.++|. ++.+++|++|++++. ++.++++||+++++
T Consensus 156 ~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 156 TANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 9999999999984 899999999999864 78899999987664
No 31
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=3.2e-45 Score=306.25 Aligned_cols=206 Identities=20% Similarity=0.312 Sum_probs=176.4
Q ss_pred cCCCCccchhhc-HHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHH
Q 026627 13 FSPSGKLVQIEH-ALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKS 90 (235)
Q Consensus 13 fsp~Grl~Q~ey-a~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~ 90 (235)
+..+-.|.+--+ ..||+++|+|+|||+++||||||+|+|.++ .++..++.+||++|++|++|+++|..+|++.+.+.+
T Consensus 9 ~~rn~~~~~~~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~l 88 (261)
T 3nzj_H 9 YQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLI 88 (261)
T ss_dssp ---------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHH
T ss_pred hhhHHHHHhcCCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHH
Confidence 344444544333 678999999999999999999999999986 677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHH
Q 026627 91 RKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNA 170 (235)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~ 170 (235)
+.+++.|+++++++++++.+++++++.++.+ .+||++++||||||++||+||.+||.|++.++++.|+|+|++.+
T Consensus 89 r~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a 163 (261)
T 3nzj_H 89 GSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAA 163 (261)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHH
T ss_pred HHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHH
Confidence 9999999999999999999999999988765 47999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcC
Q 026627 171 KTFLEKRYVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLT 223 (235)
Q Consensus 171 ~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~ 223 (235)
+++||+.|+++|+++||++++++||..+.++|. ++.+++|++|++++.++.+.
T Consensus 164 ~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~ 217 (261)
T 3nzj_H 164 MAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLR 217 (261)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEE
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEec
Confidence 999999999999999999999999999999986 89999999999997566544
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=5.5e-45 Score=301.36 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=187.8
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+++++.+++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999996 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCC-C-----CeEEEECCCCcEEee--eEEeeCCCchHHHHHHHHhccCCCC
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-G-----PQLYQVDPSGSYFSW--KASAMGKNVSNAKTFLEKRYVEEME 183 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-g-----p~Ly~id~~G~~~~~--~~~a~G~~s~~~~~~L~~~~~~~~s 183 (235)
+.+++++|.+++.. .|||++++||||||++ | |+||.+||.|++.++ +++|+|+|+++++++|++.|+++|+
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999999887764 7999999999999985 7 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCC-CCC-c-E-----EEEEEecCCcEEEcCHHHHHHHHHHc
Q 026627 184 LDDAVHTAILTLKEGFEGQI-SEK-N-I-----EIGIIGEKKEFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 184 ~~ea~~l~~~~l~~~~~~~~-~~~-~-i-----ei~~i~~~~~~~~l~~~ei~~~l~~~ 234 (235)
++||++++++||..+.++|. +++ . + +|++|+++ ++++++++|++++++++
T Consensus 160 ~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~-g~~~l~~~ei~~~~~~~ 217 (235)
T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA-GAVHVSEETTSELARRI 217 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT-EEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCC-CeEEeCHHHHHHHHHHH
Confidence 99999999999999999886 443 2 2 99999987 59999999999999875
No 33
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3e-46 Score=308.64 Aligned_cols=203 Identities=18% Similarity=0.206 Sum_probs=189.7
Q ss_pred HHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-----
Q 026627 26 LTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHR----- 99 (235)
Q Consensus 26 ~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 99 (235)
++|+.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 46789999999999999999999999986 678888999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCC-CCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhc
Q 026627 100 LYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 178 (235)
Q Consensus 100 ~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~ 178 (235)
+++.+++++.+++++++.++.+ +.+.|||++++|+||+|++ ||+||.+||.|++.++++.++|+|+++++++|++.|
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~--r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQR--RSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHH--HHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHHHHh--cCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998654 4457999999999999985 899999999999999999999999999999999999
Q ss_pred cC-----CCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHH
Q 026627 179 VE-----EMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDY 230 (235)
Q Consensus 179 ~~-----~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~ 230 (235)
++ +|+++||++++++||+.+.++|. ++.+++|++|+++++++.++++||+.+
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccc
Confidence 99 99999999999999999999985 899999999999846999999887654
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=7.7e-45 Score=294.75 Aligned_cols=187 Identities=16% Similarity=0.246 Sum_probs=178.4
Q ss_pred HHHhhcCCCcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCC
Q 026627 25 ALTAVGSGQTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKE 103 (235)
Q Consensus 25 a~ka~~~G~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 103 (235)
..||+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 2 ~~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 2 KKGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp CTTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999975 787889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCC
Q 026627 104 PIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEM 182 (235)
Q Consensus 104 ~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~ 182 (235)
++++.+++++++.+|.+++. |++++|+||||+ +||+||.+||.|++.++++.++|+|+++++++|++.|+++|
T Consensus 82 -~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred -CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 99999999999999998752 999999999997 78999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 183 ELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 183 s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
+++||++++++||+.+.++|. ++.+++|++|++++
T Consensus 156 s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g 191 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG 191 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC
Confidence 999999999999999999985 89999999999986
No 35
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=8.7e-45 Score=299.53 Aligned_cols=190 Identities=24% Similarity=0.357 Sum_probs=179.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
||+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 68999999999999999999875 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++.++.+ .+||++++|+||+|++||+||.+||.|++.++++.|+|+|+++++++|++.|+++|+++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL 155 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence 9999998865 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHH
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIR 228 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~ 228 (235)
++||+.+..+|. ++.+++|++|+++ +++.+++.+++
T Consensus 156 ~~al~~~~~~D~~sg~~iev~vi~~d-g~~~l~~~~i~ 192 (234)
T 3unf_H 156 VEAITAGILSDLGSGGNVDACVITAG-GAKLQRALSTP 192 (234)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEESS-CEEEEEEEECC
T ss_pred HHHHHHHHhhcCCCCCcEEEEEEECC-CEEEeCceecc
Confidence 999999999986 8999999999998 59998887764
No 36
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.5e-44 Score=289.33 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=177.4
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999865 45567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC--CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVH 189 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~ 189 (235)
+++++.+|.+++. ++||++++|+||||+ +||+||.+||.|++.+++++|+|+|+++++++|++.|+++|+++||++
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999988753 359999999999996 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCH
Q 026627 190 TAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTP 224 (235)
Q Consensus 190 l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~ 224 (235)
++++||..+.++|. ++.+++|++|+++ +++++++
T Consensus 160 l~~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~~~~ 194 (198)
T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKD-GIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETT-EEEEECC
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEcCC-CEEEecc
Confidence 99999999999884 8999999999997 5888875
No 37
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.5e-45 Score=309.87 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=191.0
Q ss_pred hhcHHHhhcCCCcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHH-
Q 026627 22 IEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHR- 99 (235)
Q Consensus 22 ~eya~ka~~~G~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 99 (235)
.+-+.+++.+|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.|.+.++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 466778899999999999999999999999986 678888999999999999999999999999999999999999998
Q ss_pred ----HhCCCCCHHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCC-CCeEEEECCCCcEEeeeEEeeCCCchHHHHHH
Q 026627 100 ----LYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFL 174 (235)
Q Consensus 100 ----~~~~~i~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~-gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L 174 (235)
.++.+++++.+++++++.++.+ +.+.|||++++||||+|++ ||+||.+||.|++.++++.++|+|+++++++|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~--r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQR--RSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHH--HHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHh--ccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 8999999999999999998654 3457999999999999985 89999999999999999999999999999999
Q ss_pred HHhccC-----CCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCHHHHHHH
Q 026627 175 EKRYVE-----EMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTPNEIRDY 230 (235)
Q Consensus 175 ~~~~~~-----~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~~ei~~~ 230 (235)
++.|++ +|+++||++++++||+.+.++|. ++.+++|++|+++++++.++++||+.+
T Consensus 189 e~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred HHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence 999999 99999999999999999999985 899999999999846999998887654
No 38
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2.1e-43 Score=287.96 Aligned_cols=187 Identities=19% Similarity=0.288 Sum_probs=174.7
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCCCc-cccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 5799999999999999999999999754 556799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCC-CeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHh---------
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKR--------- 177 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~--------- 177 (235)
+.+++++++.++ +++ .|||++++|+||||++| |+||.+||.|++.+++++|+|+|+++++++|++.
T Consensus 86 ~~la~~l~~~~y--~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTILY--SRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHHH--HTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHHH--hhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 999999999985 443 68999999999999755 9999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEE
Q 026627 178 YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFR 220 (235)
Q Consensus 178 ~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~ 220 (235)
|+++|+++||++++++||..+.++|. ++.+++|++|++++ ++
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~ 204 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IR 204 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eE
Confidence 88999999999999999999999985 89999999999985 44
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2e-43 Score=289.71 Aligned_cols=187 Identities=20% Similarity=0.303 Sum_probs=175.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999875 46677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++.++.+ .|||++++|+||+|++||+||.+||.|++.++++.|+|+|+++++++|++.|+++|+++||++++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 155 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 9999998766 47999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCH
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTP 224 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~ 224 (235)
++||+.+.++|. ++.+++|++++++++++.+.+
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~ 189 (222)
T 1ryp_I 156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN 189 (222)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred HHHHHHHHhccccCCCcEEEEEEECCCCEEEEec
Confidence 999999999986 799999999999854776543
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=5.6e-43 Score=287.07 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=174.7
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCCCc-cccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhC-CCCC
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYK-EPIP 106 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 106 (235)
+++|+|+|||+++||||||+|+|.++++ +..++.+||++|++|++|+++|..+|++.+.+.++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 6799999999999999999999999754 5678999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCC-CeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHh--------
Q 026627 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKG-PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKR-------- 177 (235)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~-------- 177 (235)
++.+++++++.++.. + .+||++++||||||++| |+||.+||.|++.++++.|+|+|+++++++|++.
T Consensus 86 v~~la~~l~~~ly~~--r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~ 161 (222)
T 1ryp_M 86 INSAARNIQHLLYGK--R--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE 161 (222)
T ss_dssp HHHHHHHHHHHHHTT--T--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred HHHHHHHHHHHHHhc--C--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence 999999999988543 2 67999999999999755 9999999999999999999999999999999998
Q ss_pred ---------ccCCCCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCCcEE
Q 026627 178 ---------YVEEMELDDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKKEFR 220 (235)
Q Consensus 178 ---------~~~~~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~ 220 (235)
|+++|+++||++++++||..+.++|. ++.+++|++|++++ ++
T Consensus 162 ~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~ 213 (222)
T 1ryp_M 162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VR 213 (222)
T ss_dssp TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EE
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eE
Confidence 88999999999999999999999985 89999999999985 44
No 41
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.1e-42 Score=281.32 Aligned_cols=188 Identities=21% Similarity=0.273 Sum_probs=173.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++ +++..++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999987 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHT 190 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l 190 (235)
+++++.+....+. .|||++++|+||||+ +||+||.+||.|++.+++++|+|+|+++++++|++.|+++|+++||+++
T Consensus 82 ~~~~~~l~~~~~~--~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 82 NFTRRNLADCLRS--RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHTS--SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 9988765222221 379999999999997 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC-CCCcEEEEEEecCCcEEEcC
Q 026627 191 AILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLT 223 (235)
Q Consensus 191 ~~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~ 223 (235)
+++||+.+.++|. ++.+++|++|+++ +++++.
T Consensus 160 ~~~al~~a~~rd~~sg~~i~v~vi~~~-g~~~~~ 192 (201)
T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKN-GIHDLD 192 (201)
T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETT-EEECCC
T ss_pred HHHHHHHHHhhccccCCceEEEEEcCC-CeEEee
Confidence 9999999999986 8999999999998 477665
No 42
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=7.9e-44 Score=287.52 Aligned_cols=193 Identities=18% Similarity=0.239 Sum_probs=179.4
Q ss_pred CcEEEEEeCCEEEEEEeecCCCC-ccccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSI-LVDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~-l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
||+|||+++||||||+|+|.+++ ++..++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999974 78889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeC-CCCeEEEECCCCcEEee-eEEeeCCCchHHHHHHHHhccCCCCHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMELDDAVH 189 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~-~gp~Ly~id~~G~~~~~-~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~ 189 (235)
+++++.+|.+ .|||++++|+||+|+ +||+||. |.|++.++ ++.++|+|+++++++|++.|+++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~ 153 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRR 153 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999876 469999999999998 6799999 99998766 5666799999999999999999999999999
Q ss_pred HHHHHHHhhccCCC-CCCcEEEEEEecCC-cEEEcCHHHHHHHHH
Q 026627 190 TAILTLKEGFEGQI-SEKNIEIGIIGEKK-EFRVLTPNEIRDYLA 232 (235)
Q Consensus 190 l~~~~l~~~~~~~~-~~~~iei~~i~~~~-~~~~l~~~ei~~~l~ 232 (235)
++++||+.+.++|. ++.+++|++|++++ .++.|+++||+++++
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 154 FTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 99999999999986 88999999999986 588899999987653
No 43
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.2e-42 Score=281.86 Aligned_cols=185 Identities=16% Similarity=0.234 Sum_probs=171.9
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCCCc-cccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
+.+|+|+|||+++||||||+|+|.++++ +..++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 4689999999999999999999999765 445689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC--CCCeEEEECCCCcEEee-eEEeeCCCchHHHHHHHHhccCCCCH
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMEL 184 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~gp~Ly~id~~G~~~~~-~~~a~G~~s~~~~~~L~~~~~~~~s~ 184 (235)
+.+++++++.+ |+++ ..||++++|+||||+ +||+||.+||.|++.++ .++++|+|+++++++|++.|+++|++
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999998 4544 349999999999995 78999999999999765 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 185 DDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 185 ~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
+||++++++||+.+.++|. ++.+++|++|++++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 9999999999999999986 79999999999985
No 44
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=3e-42 Score=279.30 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=171.4
Q ss_pred hcCCCcEEEEEeCCEEEEEEeecCCCCc-cccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCH
Q 026627 29 VGSGQTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPV 107 (235)
Q Consensus 29 ~~~G~tivgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 107 (235)
+.+|+|+|||+++||||||+|+|.++++ +..++.+||++|+ |++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 5789999999999999999999999765 4456999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeC--CCCeEEEECCCCcEEee-eEEeeCCCchHHHHHHHHhccCCCCH
Q 026627 108 TQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDD--KGPQLYQVDPSGSYFSW-KASAMGKNVSNAKTFLEKRYVEEMEL 184 (235)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~--~gp~Ly~id~~G~~~~~-~~~a~G~~s~~~~~~L~~~~~~~~s~ 184 (235)
+.+++++++.+ |+++. .||++++|+||||+ +||+||.+||.|++.++ .++++|+|+++++++|++.|+++|++
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999988 45543 39999999999996 78999999999999766 67999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCC-CCCcEEEEEEecCC
Q 026627 185 DDAVHTAILTLKEGFEGQI-SEKNIEIGIIGEKK 217 (235)
Q Consensus 185 ~ea~~l~~~~l~~~~~~~~-~~~~iei~~i~~~~ 217 (235)
+||++++++||..+.++|. ++.+++|++|++++
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC
Confidence 9999999999999999985 89999999999986
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2e-42 Score=285.75 Aligned_cols=186 Identities=22% Similarity=0.334 Sum_probs=174.7
Q ss_pred CcEEEEEeCCEEEEEEeecCCCCc-cccCCceeEEEecCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPSIL-VDESSVHKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLV 111 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~~l-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 111 (235)
+|+|||+++||||||+|+|.++++ +..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999999754 5567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHH
Q 026627 112 RETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTA 191 (235)
Q Consensus 112 ~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~ 191 (235)
+++++.++.++ +||++++|+||||++||+||.+||.|++.+++++|+|+|++.++++|++.|+++|+++||++++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999888763 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCcEEEEEEecCCcEEEcCH
Q 026627 192 ILTLKEGFEGQI-SEKNIEIGIIGEKKEFRVLTP 224 (235)
Q Consensus 192 ~~~l~~~~~~~~-~~~~iei~~i~~~~~~~~l~~ 224 (235)
++||+.+..+|. ++.+++|++|+++ +++.+.+
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~-g~~~~~~ 188 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKN-KLDFLRP 188 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETT-EEECCSE
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECC-cEEEEcc
Confidence 999999999986 7999999999997 4776654
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1e-35 Score=236.37 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=148.9
Q ss_pred cCCCcEEEEEeCCEEEEEEeecCCC-Cc-cccCCceeEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 026627 30 GSGQTSLGIKASNGVVIATEKKLPS-IL-VDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIP 106 (235)
Q Consensus 30 ~~G~tivgi~~~dgvvla~d~~~~~-~l-~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 106 (235)
.+|+|+|||+++||||||+|+|.++ .+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 5799999999999999999999986 67 888999999999 999999999999999999999999999877 3 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEe--eeEEeeCCCchHHHHHHHHhccC---C
Q 026627 107 VTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFS--WKASAMGKNVSNAKTFLEKRYVE---E 181 (235)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~--~~~~a~G~~s~~~~~~L~~~~~~---~ 181 (235)
+.+.++++.+.+++....|||++++|++ +||+||.+||.|++.+ +++.|+|+|+++++++|++.|++ +
T Consensus 77 ---~~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 77 ---LKRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp ---HHHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred ---hHHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 2333333445556666789999999999 4799999999999998 49999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHhhccCCC-CCCcEEEEEE
Q 026627 182 MELDDAVHTAILTLKEGFEGQI-SEKNIEIGII 213 (235)
Q Consensus 182 ~s~~ea~~l~~~~l~~~~~~~~-~~~~iei~~i 213 (235)
|+.+| ++.+||+.+.++|. ++.+++|.+|
T Consensus 150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 150 MSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 99999 46799999999985 9999999987
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.8e-35 Score=231.27 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=145.0
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (235)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.+.++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999986 68888899999999 99999999999999999999999999987643 24444
Q ss_pred HHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeee--EEeeCCCchHHHHHHHHhcc-CCCCHHHH
Q 026627 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWK--ASAMGKNVSNAKTFLEKRYV-EEMELDDA 187 (235)
Q Consensus 111 ~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~--~~a~G~~s~~~~~~L~~~~~-~~~s~~ea 187 (235)
++. .+.+++..+.|||++++|++ | ||+||.+||.|++.+++ +.|+|+|+++++++||+.|+ ++|+.
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~--- 144 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA--- 144 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence 444 33445555578999998888 5 89999999999999987 99999999999999999999 99997
Q ss_pred HHHHHHHHHhhccCCC-CCCcEEEEEE
Q 026627 188 VHTAILTLKEGFEGQI-SEKNIEIGII 213 (235)
Q Consensus 188 ~~l~~~~l~~~~~~~~-~~~~iei~~i 213 (235)
++++.+||+.+.++|. ++.+++|.++
T Consensus 145 ~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 6789999999999985 8999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1e-34 Score=229.36 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=144.9
Q ss_pred CcEEEEEeCCEEEEEEeecCCC-CccccCCceeEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q 026627 33 QTSLGIKASNGVVIATEKKLPS-ILVDESSVHKIQSL-TPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQL 110 (235)
Q Consensus 33 ~tivgi~~~dgvvla~d~~~~~-~l~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 110 (235)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+. ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999986 57888999999999 9999999999999999999999999998874 33333
Q ss_pred HHHHHHHHHHHhhcCCcccceeEEEEEEEeCCCCeEEEECCCCcEEeee---EEeeCCCchHHHHHHHHhcc-CCCCHHH
Q 026627 111 VRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWK---ASAMGKNVSNAKTFLEKRYV-EEMELDD 186 (235)
Q Consensus 111 ~~~l~~~~~~~~~~~~~rP~~~~~il~G~d~~gp~Ly~id~~G~~~~~~---~~a~G~~s~~~~~~L~~~~~-~~~s~~e 186 (235)
+.. +.+.++++.+.||+ .++++|+| ||+||.+||.|++.+++ +.|+|+|+++++++||+.|+ ++|+.+
T Consensus 75 ~~~---l~~~~~~~~~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~- 146 (174)
T 1g3k_A 75 AVE---LAKDWRTDRALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH- 146 (174)
T ss_dssp HHH---HHHHHHHSTTGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred HHH---HHHHHHhccCcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence 334 44445555557786 46777887 79999999999999988 99999999999999999999 999955
Q ss_pred HHHHHHHHHHhhccCCC-CCCcEEEEEEe
Q 026627 187 AVHTAILTLKEGFEGQI-SEKNIEIGIIG 214 (235)
Q Consensus 187 a~~l~~~~l~~~~~~~~-~~~~iei~~i~ 214 (235)
+++.+||+.+.++|. ++++++|.+|+
T Consensus 147 --~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 --EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred --HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999985 89999999986
No 49
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=43.71 E-value=14 Score=29.23 Aligned_cols=34 Identities=9% Similarity=-0.076 Sum_probs=29.3
Q ss_pred ccccCCCCccchhhcHHHhhcCCCcEEEEEeCCE
Q 026627 10 LTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNG 43 (235)
Q Consensus 10 ~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dg 43 (235)
.|.||+||...--|++.+|...|=..||++-.+-
T Consensus 7 Ht~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 7 HTPLCGHAEGHPEAYLEEARAKGLKGVVFTDHSP 40 (267)
T ss_dssp CCGGGSSCCSCHHHHHHHHHHTTCSEEEEEEECC
T ss_pred CcCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 4689999998777999999999999999987653
No 50
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=43.48 E-value=9.8 Score=31.74 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=29.1
Q ss_pred CeEEEECCCCcEEe-eeEEeeCCCchHHHHHHHHhccCCCCHH
Q 026627 144 PQLYQVDPSGSYFS-WKASAMGKNVSNAKTFLEKRYVEEMELD 185 (235)
Q Consensus 144 p~Ly~id~~G~~~~-~~~~a~G~~s~~~~~~L~~~~~~~~s~~ 185 (235)
|..|.||++|.... ++..-.+.+.+.+...|++...++|++.
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~ 145 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLN 145 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCC
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHH
Confidence 78899999999976 3445556667777777777654444433
No 51
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=34.95 E-value=99 Score=20.52 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=38.4
Q ss_pred cCCCCHHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCC-cEEEcCHHHHHHHHH
Q 026627 179 VEEMELDDAVHTAILTLKEGFEGQISEKNIEIGIIGEKK-EFRVLTPNEIRDYLA 232 (235)
Q Consensus 179 ~~~~s~~ea~~l~~~~l~~~~~~~~~~~~iei~~i~~~~-~~~~l~~~ei~~~l~ 232 (235)
.++++.++..+.++..++. ..+..|.+.+++.+| .+...+.+|++..++
T Consensus 23 ~~~i~~~~L~~kv~~~~~~-----~~~~~f~lky~DEeGD~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSF-----DNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTC-----CSSCCEEEEECCSSSCCEECCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCC-----CCCCeEEEEEECCCCCcccccCHHHHHHHHH
Confidence 4678999998888887662 245689999999875 577888888888765
No 52
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=32.95 E-value=10 Score=23.68 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.3
Q ss_pred cccCCCCcc-chhhcH
Q 026627 11 TTFSPSGKL-VQIEHA 25 (235)
Q Consensus 11 ~~fsp~Grl-~Q~eya 25 (235)
...|+.||| |||||.
T Consensus 40 ~sLs~SG~isf~VeFm 55 (73)
T 1p65_A 40 CTLSDSGRISYTVEFS 55 (73)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEeccCCceeEEEEEe
Confidence 456899999 999984
No 53
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=31.35 E-value=19 Score=27.14 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=28.2
Q ss_pred ccccCCCCcc-chhhcHHHhhcCCCcEEEEEe
Q 026627 10 LTTFSPSGKL-VQIEHALTAVGSGQTSLGIKA 40 (235)
Q Consensus 10 ~~~fsp~Grl-~Q~eya~ka~~~G~tivgi~~ 40 (235)
+-+||+.||= .-+|.|+++-++|-++|+|+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 5689999987 588999999999999999998
No 54
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=28.96 E-value=14 Score=26.12 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCCCcccccCCCCccch
Q 026627 5 QYSFSLTTFSPSGKLVQ 21 (235)
Q Consensus 5 ~yd~~~~~fsp~Grl~Q 21 (235)
+-|..+|.|+|+||+.-
T Consensus 54 gm~h~vTfF~~~Grl~~ 70 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYIT 70 (138)
T ss_dssp TCEEEEEEECTTSCEEE
T ss_pred cceeEEEEEcCCCcEEE
Confidence 44677899999998853
No 55
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.57 E-value=30 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCcccccCCCCccchhh-------cHHHh-hcCCCcEEEEEeCC
Q 026627 6 YSFSLTTFSPSGKLVQIE-------HALTA-VGSGQTSLGIKASN 42 (235)
Q Consensus 6 yd~~~~~fsp~Grl~Q~e-------ya~ka-~~~G~tivgi~~~d 42 (235)
|...+.+|+|+|.++.+. +|.+- ..-|..++|.+.++
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG 48 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDG 48 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETT
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECC
Confidence 344588999999998754 33221 12366788887754
No 56
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=24.69 E-value=1.4e+02 Score=20.87 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCCcEEEEEEecCC--cEEEcCHHHHHHHHHHc
Q 026627 204 SEKNIEIGIIGEKK--EFRVLTPNEIRDYLAEV 234 (235)
Q Consensus 204 ~~~~iei~~i~~~~--~~~~l~~~ei~~~l~~~ 234 (235)
..+.+-|.+++++. .+|.+.++++-.+..+|
T Consensus 65 e~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l 97 (117)
T 2hc5_A 65 KLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAM 97 (117)
T ss_dssp ETTEEEEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred CCCcEEEEEEECCCCcEEEeCChHHHHHHHHHH
Confidence 35688999999873 46899999999887765
No 57
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=22.99 E-value=88 Score=19.60 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.1
Q ss_pred hHHHHHHHHhccC-CCCHHHHHHHHHH
Q 026627 168 SNAKTFLEKRYVE-EMELDDAVHTAIL 193 (235)
Q Consensus 168 ~~~~~~L~~~~~~-~~s~~ea~~l~~~ 193 (235)
+.++-+|...|++ +.|+.|.++.|..
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAks 46 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHHh
Confidence 5678889999988 9999999998763
No 58
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=22.59 E-value=46 Score=25.78 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=27.4
Q ss_pred ccccCCCCccchhhcHHHhhcCCCcEEEEEeCCE
Q 026627 10 LTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNG 43 (235)
Q Consensus 10 ~~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dg 43 (235)
.|.||++|...--|++..|...|=..||++-.+.
T Consensus 9 Ht~~Sd~g~~~~~e~v~~A~~~Gl~~iaiTDH~~ 42 (245)
T 1m65_A 9 HTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGP 42 (245)
T ss_dssp CCTTSTTCCCCHHHHHHHHHHHTCCEEEEEEECT
T ss_pred CCCCCCCCCCcHHHHHHHHHHCCCCEEEECCCCC
Confidence 4678888876555899999999999999987653
No 59
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=22.32 E-value=55 Score=16.54 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=9.5
Q ss_pred cEEEcCHHHHHHHHHH
Q 026627 218 EFRVLTPNEIRDYLAE 233 (235)
Q Consensus 218 ~~~~l~~~ei~~~l~~ 233 (235)
++.++++.+|+++|+.
T Consensus 5 gvtrfdekqieelldn 20 (31)
T 4h62_V 5 GVTRFDEKQIEELLDN 20 (31)
T ss_dssp -----CHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHH
Confidence 5788999999999874
No 60
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=21.65 E-value=1.2e+02 Score=25.61 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEEEEeCCCCeEEEECCCCcEEeeeEEeeCCCchHHHHHHHHhccCCCCHHHHHHHHHHH
Q 026627 135 LVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILT 194 (235)
Q Consensus 135 il~G~d~~gp~Ly~id~~G~~~~~~~~a~G~~s~~~~~~L~~~~~~~~s~~ea~~l~~~~ 194 (235)
||.-+.. |-.+..+|..|.+.+...+++|.|. .++++. ..-...+.+|..+++.+.
T Consensus 178 llVnIGs-GvSiikv~~~~~f~rvgG~siGGGT--flGL~~-lLtg~~~~dEl~~lA~~G 233 (360)
T 2i7n_A 178 LLVNMGS-GVSILAVYSKDNYKRVTGTSLGGGT--FLGLCC-LLTGCETFEEALEMAAKG 233 (360)
T ss_dssp EEEEESS-SEEEEEEEETTEEEEEEEESCSHHH--HHHHHH-HHHCCCSHHHHHHHHHHC
T ss_pred EEEEeCC-CcEEEEEcCCCCEEEeccccCccHh--HHHHHH-HHhCCCCHHHHHHHHHcC
Confidence 4444433 5689999999999889999999776 344444 344457999999998765
No 61
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=21.16 E-value=42 Score=27.70 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=31.3
Q ss_pred CCCCcc-cccCCCCccchhhcHHHhhcCCCcEEEEEeCCE
Q 026627 5 QYSFSL-TTFSPSGKLVQIEHALTAVGSGQTSLGIKASNG 43 (235)
Q Consensus 5 ~yd~~~-~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dg 43 (235)
..|.++ |.|| ||.+.--|++.+|...|-..|||+-.|.
T Consensus 14 ~~DLH~Hs~~S-DG~~~~~elv~~A~~~Gl~~iaiTDH~~ 52 (301)
T 3o0f_A 14 GWDIHCHTVFS-DGTETPRTLVEQARKLGLHGVAIADHDT 52 (301)
T ss_dssp SEEEEECCTTT-TCSSCHHHHHHHHHHTTCSEEEECCBTC
T ss_pred eEEeeECCCCC-CCCCCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 456554 4577 9999888999999999999999988764
No 62
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=20.52 E-value=57 Score=26.47 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCcc-cccCCCCccchhhcHHHhhcCCCcEEEEEeCCE
Q 026627 6 YSFSL-TTFSPSGKLVQIEHALTAVGSGQTSLGIKASNG 43 (235)
Q Consensus 6 yd~~~-~~fsp~Grl~Q~eya~ka~~~G~tivgi~~~dg 43 (235)
.|.++ |.|| ||...--|++.+|...|=..||++-.+.
T Consensus 4 ~DLH~Ht~~S-Dg~~~~~elv~~A~~~Gl~~iaiTDH~~ 41 (292)
T 2yb1_A 4 IDLHFHSRTS-DGALTPTEVIDRAAARAPALLALTDHDC 41 (292)
T ss_dssp EECCBCCTTT-TCSSCHHHHHHHHHTTCCSEEEECCBTC
T ss_pred cccccCCCcc-CCCCCHHHHHHHHHHCCCCEEEEecCCc
Confidence 35544 4578 9999888999999999999999987763
Done!