Query 026628
Match_columns 235
No_of_seqs 262 out of 1231
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 1E-19 2.2E-24 133.5 9.2 76 141-217 2-77 (77)
2 PF13417 GST_N_3: Glutathione 99.7 7.7E-18 1.7E-22 122.8 8.3 73 143-219 1-73 (75)
3 cd03045 GST_N_Delta_Epsilon GS 99.7 1.7E-17 3.8E-22 119.1 9.1 73 141-215 1-74 (74)
4 cd03059 GST_N_SspA GST_N famil 99.7 2.6E-17 5.7E-22 117.7 9.2 73 141-217 1-73 (73)
5 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.6E-17 5.6E-22 120.3 8.9 72 141-214 1-73 (73)
6 cd03048 GST_N_Ure2p_like GST_N 99.7 1.1E-16 2.4E-21 117.5 9.9 78 141-219 2-81 (81)
7 PRK09481 sspA stringent starva 99.7 9.7E-17 2.1E-21 137.3 10.8 83 140-226 10-93 (211)
8 cd03051 GST_N_GTT2_like GST_N 99.7 9E-17 2E-21 114.3 8.6 73 141-214 1-74 (74)
9 cd03053 GST_N_Phi GST_N family 99.7 1.8E-16 3.8E-21 114.6 9.4 74 141-216 2-76 (76)
10 cd03056 GST_N_4 GST_N family, 99.7 1.6E-16 3.4E-21 113.2 8.9 72 141-214 1-73 (73)
11 cd03050 GST_N_Theta GST_N fami 99.7 1.7E-16 3.7E-21 115.2 9.2 75 141-217 1-76 (76)
12 cd03058 GST_N_Tau GST_N family 99.7 1.9E-16 4E-21 114.5 9.1 73 141-217 1-74 (74)
13 cd03040 GST_N_mPGES2 GST_N fam 99.7 2.8E-16 6.1E-21 114.1 9.0 75 140-218 1-77 (77)
14 cd03060 GST_N_Omega_like GST_N 99.7 2.8E-16 6E-21 113.1 8.8 69 142-213 2-70 (71)
15 COG0625 Gst Glutathione S-tran 99.7 2.1E-16 4.7E-21 134.6 9.3 85 141-226 1-86 (211)
16 PRK15113 glutathione S-transfe 99.7 3.9E-16 8.4E-21 133.9 10.6 85 140-226 5-96 (214)
17 cd03037 GST_N_GRX2 GST_N famil 99.6 6.1E-16 1.3E-20 110.9 8.3 71 141-215 1-71 (71)
18 cd03044 GST_N_EF1Bgamma GST_N 99.6 7.5E-16 1.6E-20 112.1 8.8 73 142-215 2-74 (75)
19 cd03076 GST_N_Pi GST_N family, 99.6 5.1E-16 1.1E-20 112.7 7.3 73 140-216 1-73 (73)
20 cd03057 GST_N_Beta GST_N famil 99.6 1.4E-15 3.1E-20 110.4 9.1 76 141-218 1-77 (77)
21 cd03047 GST_N_2 GST_N family, 99.6 1.4E-15 3.1E-20 109.7 9.0 72 141-214 1-73 (73)
22 PLN02473 glutathione S-transfe 99.6 1.3E-15 2.9E-20 129.6 10.1 84 140-225 2-89 (214)
23 cd03046 GST_N_GTT1_like GST_N 99.6 1.9E-15 4.1E-20 108.8 9.2 75 141-218 1-76 (76)
24 cd03061 GST_N_CLIC GST_N famil 99.6 1.6E-15 3.4E-20 116.7 8.8 70 147-220 20-89 (91)
25 cd03049 GST_N_3 GST_N family, 99.6 1.8E-15 3.8E-20 108.9 8.3 71 141-214 1-73 (73)
26 cd03055 GST_N_Omega GST_N fami 99.6 3.4E-15 7.3E-20 112.5 10.0 73 139-214 17-89 (89)
27 cd03042 GST_N_Zeta GST_N famil 99.6 3E-15 6.4E-20 106.8 8.7 72 141-214 1-73 (73)
28 KOG0868 Glutathione S-transfer 99.6 1E-15 2.2E-20 130.8 6.3 89 139-229 4-95 (217)
29 PF13409 GST_N_2: Glutathione 99.6 2.2E-15 4.7E-20 109.0 7.1 68 148-216 1-70 (70)
30 cd03080 GST_N_Metaxin_like GST 99.6 4E-15 8.7E-20 108.4 8.5 67 141-218 2-75 (75)
31 cd03039 GST_N_Sigma_like GST_N 99.6 2.1E-15 4.5E-20 108.4 6.7 72 141-215 1-72 (72)
32 cd03038 GST_N_etherase_LigE GS 99.6 3.6E-15 7.8E-20 110.5 7.9 70 147-218 14-84 (84)
33 PRK10387 glutaredoxin 2; Provi 99.6 5.3E-15 1.2E-19 125.1 9.0 79 141-223 1-79 (210)
34 cd00570 GST_N_family Glutathio 99.6 1.1E-14 2.4E-19 100.0 8.7 71 141-214 1-71 (71)
35 PRK13972 GSH-dependent disulfi 99.6 1.3E-14 2.9E-19 124.1 10.6 82 141-224 2-89 (215)
36 PLN02395 glutathione S-transfe 99.6 2E-14 4.2E-19 122.3 10.3 84 140-226 2-89 (215)
37 PRK11752 putative S-transferas 99.5 3.7E-14 8.1E-19 126.5 10.3 84 140-225 44-136 (264)
38 TIGR02182 GRXB Glutaredoxin, G 99.5 2.8E-14 6E-19 122.6 8.8 76 142-222 1-77 (209)
39 cd03077 GST_N_Alpha GST_N fami 99.5 6.1E-14 1.3E-18 103.6 9.1 72 140-218 1-77 (79)
40 cd03075 GST_N_Mu GST_N family, 99.5 7.1E-14 1.5E-18 104.2 8.4 74 142-217 2-82 (82)
41 TIGR01262 maiA maleylacetoacet 99.5 5.1E-14 1.1E-18 119.1 8.6 82 142-225 1-85 (210)
42 PRK10357 putative glutathione 99.5 8.1E-14 1.8E-18 117.6 8.7 83 141-226 1-84 (202)
43 PLN02378 glutathione S-transfe 99.5 7.4E-14 1.6E-18 120.2 8.4 72 145-220 16-87 (213)
44 KOG0867 Glutathione S-transfer 99.5 1.1E-13 2.3E-18 121.3 9.5 86 139-226 1-90 (226)
45 TIGR00862 O-ClC intracellular 99.5 1.1E-13 2.3E-18 122.8 9.1 76 146-225 16-91 (236)
46 cd03054 GST_N_Metaxin GST_N fa 99.5 1.5E-13 3.3E-18 98.8 7.9 65 141-216 1-72 (72)
47 PF02798 GST_N: Glutathione S- 99.5 2E-13 4.3E-18 100.1 8.7 73 140-215 2-76 (76)
48 cd03043 GST_N_1 GST_N family, 99.5 2.8E-13 6.1E-18 98.5 8.6 68 145-214 6-73 (73)
49 PRK10542 glutathionine S-trans 99.4 2.7E-13 5.9E-18 113.9 8.1 80 141-222 1-83 (201)
50 KOG0406 Glutathione S-transfer 99.4 5.6E-13 1.2E-17 118.0 9.2 85 139-227 8-95 (231)
51 PTZ00057 glutathione s-transfe 99.4 1.2E-12 2.5E-17 111.8 8.7 78 140-219 4-85 (205)
52 PLN02817 glutathione dehydroge 99.4 1.4E-12 3.1E-17 117.2 8.8 71 146-220 70-140 (265)
53 TIGR02190 GlrX-dom Glutaredoxi 99.3 5.6E-12 1.2E-16 93.1 8.9 73 138-214 7-79 (79)
54 PRK10638 glutaredoxin 3; Provi 99.3 1.3E-11 2.9E-16 91.6 8.5 75 138-215 1-75 (83)
55 cd03029 GRX_hybridPRX5 Glutare 99.3 2.6E-11 5.6E-16 87.4 8.9 71 140-214 2-72 (72)
56 KOG4420 Uncharacterized conser 99.2 1.6E-11 3.5E-16 110.4 5.4 82 137-220 23-105 (325)
57 COG2999 GrxB Glutaredoxin 2 [P 99.1 4.5E-11 9.7E-16 102.4 5.1 76 141-220 1-76 (215)
58 cd03027 GRX_DEP Glutaredoxin ( 99.1 2.6E-10 5.6E-15 82.5 7.7 69 140-211 2-70 (73)
59 TIGR02196 GlrX_YruB Glutaredox 99.1 4E-10 8.6E-15 79.0 7.7 72 140-214 1-74 (74)
60 cd02066 GRX_family Glutaredoxi 99.1 4.6E-10 1E-14 78.1 8.0 70 140-212 1-70 (72)
61 PRK11200 grxA glutaredoxin 1; 99.1 8E-10 1.7E-14 82.3 8.7 77 139-218 1-84 (85)
62 cd03418 GRX_GRXb_1_3_like Glut 99.1 7.2E-10 1.6E-14 79.6 8.0 72 140-214 1-73 (75)
63 TIGR02183 GRXA Glutaredoxin, G 99.0 1.3E-09 2.9E-14 81.9 8.8 75 141-218 2-83 (86)
64 cd03079 GST_N_Metaxin2 GST_N f 99.0 9.3E-10 2E-14 81.7 7.5 60 147-216 15-74 (74)
65 COG0695 GrxC Glutaredoxin and 99.0 1.1E-09 2.4E-14 81.8 7.9 75 139-215 1-76 (80)
66 TIGR02200 GlrX_actino Glutared 99.0 2.3E-09 4.9E-14 76.6 8.4 73 140-214 1-76 (77)
67 TIGR02181 GRX_bact Glutaredoxi 98.9 3.9E-09 8.4E-14 77.0 7.3 72 141-215 1-72 (79)
68 cd02976 NrdH NrdH-redoxin (Nrd 98.9 4.6E-09 1E-13 73.5 6.7 63 140-205 1-63 (73)
69 PRK10329 glutaredoxin-like pro 98.9 6.7E-09 1.5E-13 77.7 7.9 75 139-215 1-75 (81)
70 PHA03050 glutaredoxin; Provisi 98.9 9.3E-09 2E-13 81.1 8.1 71 139-211 13-88 (108)
71 KOG1695 Glutathione S-transfer 98.9 8.8E-09 1.9E-13 90.1 8.2 77 138-218 1-77 (206)
72 cd03419 GRX_GRXh_1_2_like Glut 98.8 1.8E-08 3.9E-13 73.2 7.5 74 140-215 1-76 (82)
73 TIGR00365 monothiol glutaredox 98.8 3.2E-08 7E-13 76.3 8.4 73 139-214 12-89 (97)
74 PF00462 Glutaredoxin: Glutare 98.8 8.5E-09 1.8E-13 71.8 4.3 59 141-202 1-59 (60)
75 KOG3029 Glutathione S-transfer 98.8 2.6E-08 5.7E-13 90.8 8.1 73 139-217 89-161 (370)
76 TIGR02194 GlrX_NrdH Glutaredox 98.8 3E-08 6.5E-13 71.6 6.9 54 141-196 1-54 (72)
77 cd03028 GRX_PICOT_like Glutare 98.7 5.5E-08 1.2E-12 73.6 8.3 73 139-214 8-85 (90)
78 TIGR02189 GlrX-like_plant Glut 98.7 6.7E-08 1.4E-12 74.8 8.8 73 139-213 8-82 (99)
79 TIGR02180 GRX_euk Glutaredoxin 98.7 8.9E-08 1.9E-12 69.6 7.2 73 141-215 1-77 (84)
80 cd03078 GST_N_Metaxin1_like GS 98.7 1.2E-07 2.6E-12 69.6 7.7 58 148-216 15-72 (73)
81 KOG1422 Intracellular Cl- chan 98.4 7.7E-07 1.7E-11 78.0 8.3 74 147-224 19-92 (221)
82 PRK10824 glutaredoxin-4; Provi 98.4 1.6E-06 3.4E-11 69.5 7.9 73 139-214 15-92 (115)
83 PLN02907 glutamate-tRNA ligase 98.2 4.9E-06 1.1E-10 84.6 8.9 70 140-225 2-72 (722)
84 cd03031 GRX_GRX_like Glutaredo 98.2 9E-06 2E-10 67.7 8.1 71 140-213 1-81 (147)
85 PRK12759 bifunctional gluaredo 98.1 8.3E-06 1.8E-10 77.7 8.5 71 138-211 1-79 (410)
86 PTZ00062 glutaredoxin; Provisi 98.1 1.4E-05 3.1E-10 69.8 8.3 72 139-213 113-189 (204)
87 KOG4244 Failed axon connection 97.9 3.3E-05 7.2E-10 70.0 7.0 74 140-224 45-126 (281)
88 KOG1752 Glutaredoxin and relat 97.9 8.1E-05 1.8E-09 58.7 7.9 75 138-214 13-89 (104)
89 cd02973 TRX_GRX_like Thioredox 97.8 7.5E-05 1.6E-09 52.4 6.9 58 140-204 2-64 (67)
90 cd03036 ArsC_like Arsenate Red 97.8 1.9E-05 4E-10 62.2 4.2 46 141-187 1-46 (111)
91 cd02977 ArsC_family Arsenate R 97.7 9.4E-05 2E-09 57.1 5.4 46 141-187 1-46 (105)
92 PRK01655 spxA transcriptional 97.5 0.00015 3.2E-09 58.9 5.3 32 141-172 2-33 (131)
93 cd03032 ArsC_Spx Arsenate Redu 97.5 0.00028 6.1E-09 55.7 5.7 32 141-172 2-33 (115)
94 TIGR01617 arsC_related transcr 97.4 0.00022 4.7E-09 56.4 4.8 42 141-183 1-42 (117)
95 COG4545 Glutaredoxin-related p 97.4 0.00055 1.2E-08 51.4 6.4 66 138-203 1-77 (85)
96 PRK12559 transcriptional regul 97.2 0.00088 1.9E-08 54.5 5.7 32 141-172 2-33 (131)
97 PRK13344 spxA transcriptional 97.2 0.00097 2.1E-08 54.4 5.9 32 141-172 2-33 (132)
98 cd03035 ArsC_Yffb Arsenate Red 97.1 0.0011 2.3E-08 52.0 5.4 34 141-174 1-34 (105)
99 cd03033 ArsC_15kD Arsenate Red 97.0 0.0015 3.2E-08 51.9 5.6 35 140-174 1-35 (113)
100 PRK10026 arsenate reductase; P 97.0 0.0015 3.2E-08 54.2 5.7 34 138-171 1-34 (141)
101 cd03030 GRX_SH3BGR Glutaredoxi 97.0 0.0053 1.1E-07 47.2 8.0 69 141-212 2-80 (92)
102 COG1393 ArsC Arsenate reductas 96.8 0.0026 5.6E-08 51.0 5.6 36 139-174 1-36 (117)
103 TIGR00412 redox_disulf_2 small 96.7 0.0086 1.9E-07 43.7 7.2 56 140-204 2-61 (76)
104 PF10568 Tom37: Outer mitochon 96.7 0.0081 1.7E-07 44.2 6.6 57 148-214 13-72 (72)
105 TIGR00411 redox_disulf_1 small 96.6 0.021 4.6E-07 40.8 8.3 71 140-215 2-80 (82)
106 TIGR01616 nitro_assoc nitrogen 96.5 0.0056 1.2E-07 49.7 5.7 33 140-172 2-34 (126)
107 cd01659 TRX_superfamily Thiore 96.5 0.0097 2.1E-07 37.9 5.5 54 141-196 1-59 (69)
108 PRK10853 putative reductase; P 96.2 0.0092 2E-07 47.7 5.2 34 141-174 2-35 (118)
109 cd03034 ArsC_ArsC Arsenate Red 96.1 0.013 2.7E-07 46.2 5.4 34 141-174 1-34 (112)
110 TIGR00014 arsC arsenate reduct 96.0 0.015 3.2E-07 46.0 5.4 35 141-175 1-35 (114)
111 cd03026 AhpF_NTD_C TRX-GRX-lik 96.0 0.027 5.9E-07 42.6 6.5 58 140-204 15-77 (89)
112 PF13192 Thioredoxin_3: Thiore 95.9 0.052 1.1E-06 39.5 7.5 57 140-205 2-62 (76)
113 PF05768 DUF836: Glutaredoxin- 95.7 0.078 1.7E-06 39.1 7.9 51 140-196 1-55 (81)
114 COG0278 Glutaredoxin-related p 95.7 0.028 6E-07 44.4 5.6 71 140-213 16-92 (105)
115 cd02949 TRX_NTR TRX domain, no 95.2 0.14 3.1E-06 38.3 8.0 59 139-203 15-80 (97)
116 PHA02125 thioredoxin-like prot 94.9 0.097 2.1E-06 37.8 6.1 51 141-196 2-52 (75)
117 PF11287 DUF3088: Protein of u 94.8 0.12 2.6E-06 41.4 6.8 66 149-218 24-108 (112)
118 PF03960 ArsC: ArsC family; I 94.1 0.091 2E-06 40.8 4.6 31 144-174 1-31 (110)
119 PRK15317 alkyl hydroperoxide r 93.4 0.099 2.1E-06 50.9 4.5 73 139-218 118-199 (517)
120 KOG0911 Glutaredoxin-related p 93.4 0.16 3.5E-06 45.3 5.4 72 139-213 139-215 (227)
121 TIGR01295 PedC_BrcD bacterioci 93.4 0.48 1E-05 37.7 7.7 62 140-201 26-101 (122)
122 TIGR02187 GlrX_arch Glutaredox 92.7 0.23 5E-06 42.9 5.3 71 140-215 136-214 (215)
123 cd02947 TRX_family TRX family; 92.7 0.66 1.4E-05 32.3 6.9 51 140-195 13-68 (93)
124 TIGR03140 AhpF alkyl hydropero 92.2 0.1 2.3E-06 50.8 2.8 73 139-218 119-200 (515)
125 TIGR03143 AhpF_homolog putativ 92.0 0.72 1.6E-05 45.5 8.4 67 140-213 479-554 (555)
126 cd02975 PfPDO_like_N Pyrococcu 91.6 0.19 4.1E-06 39.3 3.1 51 140-195 24-80 (113)
127 PF00085 Thioredoxin: Thioredo 90.8 2.7 5.8E-05 30.5 8.6 74 140-216 20-103 (103)
128 KOG2903 Predicted glutathione 90.7 0.86 1.9E-05 42.0 6.8 90 139-228 36-172 (319)
129 PF04908 SH3BGR: SH3-binding, 90.5 1.3 2.8E-05 34.7 6.9 70 139-211 1-85 (99)
130 cd02950 TxlA TRX-like protein 89.7 5.7 0.00012 32.2 10.4 88 140-231 23-124 (142)
131 COG0435 ECM4 Predicted glutath 89.6 1.6 3.5E-05 40.5 7.7 90 139-228 50-174 (324)
132 PRK10877 protein disulfide iso 88.9 3.3 7.2E-05 36.6 9.1 34 140-173 110-146 (232)
133 cd02951 SoxW SoxW family; SoxW 87.2 2.7 5.8E-05 32.6 6.7 63 139-201 16-97 (125)
134 TIGR01068 thioredoxin thioredo 86.6 1.4 3E-05 31.8 4.5 71 140-216 17-100 (101)
135 TIGR01126 pdi_dom protein disu 85.6 1.7 3.8E-05 31.6 4.6 72 139-215 15-100 (102)
136 PTZ00051 thioredoxin; Provisio 85.5 1.1 2.3E-05 33.0 3.4 56 140-201 21-82 (98)
137 cd02953 DsbDgamma DsbD gamma f 84.4 2.5 5.3E-05 31.6 5.0 54 140-194 14-76 (104)
138 cd02984 TRX_PICOT TRX domain, 84.3 1.4 3.1E-05 32.2 3.6 58 140-201 17-79 (97)
139 cd02996 PDI_a_ERp44 PDIa famil 83.6 5.8 0.00012 29.9 6.8 51 140-195 21-83 (108)
140 cd02959 ERp19 Endoplasmic reti 82.8 3.4 7.4E-05 32.4 5.4 61 140-204 22-91 (117)
141 PF09635 MetRS-N: MetRS-N bind 82.6 0.76 1.7E-05 37.4 1.6 29 191-219 36-64 (122)
142 KOG3027 Mitochondrial outer me 82.1 3.1 6.8E-05 37.2 5.4 64 141-217 29-92 (257)
143 cd03020 DsbA_DsbC_DsbG DsbA fa 81.3 3 6.4E-05 35.3 4.9 34 139-172 79-114 (197)
144 cd02993 PDI_a_APS_reductase PD 80.7 7.9 0.00017 29.4 6.7 53 139-195 23-83 (109)
145 cd02955 SSP411 TRX domain, SSP 79.9 6.7 0.00015 31.5 6.3 65 141-206 19-97 (124)
146 PRK09381 trxA thioredoxin; Pro 78.9 20 0.00043 26.8 8.4 70 140-215 24-106 (109)
147 PRK11657 dsbG disulfide isomer 78.7 4.7 0.0001 36.0 5.5 32 140-171 120-155 (251)
148 PF04134 DUF393: Protein of un 78.7 5.3 0.00012 30.6 5.2 69 143-216 1-77 (114)
149 cd02989 Phd_like_TxnDC9 Phosdu 78.3 2.6 5.7E-05 32.8 3.4 60 140-204 25-89 (113)
150 PRK10996 thioredoxin 2; Provis 78.2 5.4 0.00012 32.1 5.3 73 140-216 55-138 (139)
151 cd02994 PDI_a_TMX PDIa family, 78.2 6.8 0.00015 28.9 5.5 69 140-214 19-100 (101)
152 PRK03147 thiol-disulfide oxido 77.1 12 0.00026 30.2 7.1 19 141-159 65-83 (173)
153 cd02961 PDI_a_family Protein D 76.7 2.8 6E-05 29.8 2.9 53 139-194 17-75 (101)
154 COG3011 Predicted thiol-disulf 76.4 16 0.00034 30.4 7.5 75 140-216 9-86 (137)
155 TIGR02187 GlrX_arch Glutaredox 75.8 11 0.00025 32.3 7.0 75 140-218 22-112 (215)
156 PF13728 TraF: F plasmid trans 75.5 17 0.00036 31.9 8.0 61 140-200 123-195 (215)
157 cd03000 PDI_a_TMX3 PDIa family 75.1 5.3 0.00012 29.9 4.2 73 140-215 18-102 (104)
158 PF13098 Thioredoxin_2: Thiore 74.9 2.9 6.4E-05 31.3 2.7 62 140-201 8-94 (112)
159 cd02985 TRX_CDSP32 TRX family, 74.6 16 0.00034 27.6 6.7 60 140-202 18-83 (103)
160 PHA02278 thioredoxin-like prot 74.5 18 0.00039 27.9 7.1 62 141-203 18-85 (103)
161 KOG2501 Thioredoxin, nucleored 74.3 7.7 0.00017 32.9 5.3 31 141-171 36-74 (157)
162 cd02972 DsbA_family DsbA famil 74.2 4.3 9.3E-05 28.6 3.3 33 141-173 1-39 (98)
163 cd02963 TRX_DnaJ TRX domain, D 73.6 4 8.6E-05 31.4 3.2 70 140-215 27-110 (111)
164 cd02997 PDI_a_PDIR PDIa family 73.1 19 0.0004 26.2 6.7 58 140-201 20-86 (104)
165 TIGR02740 TraF-like TraF-like 72.6 22 0.00047 32.2 8.2 61 141-201 170-242 (271)
166 cd03023 DsbA_Com1_like DsbA fa 72.2 8.2 0.00018 30.0 4.8 33 140-172 8-45 (154)
167 cd02948 TRX_NDPK TRX domain, T 71.8 7.2 0.00016 29.3 4.3 57 140-201 20-82 (102)
168 PTZ00443 Thioredoxin domain-co 71.4 9.1 0.0002 33.9 5.4 76 140-219 55-141 (224)
169 KOG3028 Translocase of outer m 71.3 19 0.0004 33.8 7.5 59 148-216 16-74 (313)
170 cd02999 PDI_a_ERp44_like PDIa 70.4 3.4 7.4E-05 31.3 2.1 52 140-195 21-77 (100)
171 cd03008 TryX_like_RdCVF Trypar 70.4 31 0.00068 28.5 8.0 19 143-161 31-49 (146)
172 KOG2824 Glutaredoxin-related p 70.1 8 0.00017 35.7 4.8 71 139-212 131-211 (281)
173 cd02954 DIM1 Dim1 family; Dim1 67.8 6.9 0.00015 31.3 3.5 50 141-195 18-73 (114)
174 PF01323 DSBA: DSBA-like thior 67.7 7.3 0.00016 31.9 3.8 33 140-172 1-38 (193)
175 cd03004 PDI_a_ERdj5_C PDIa fam 67.0 4.6 0.0001 30.0 2.2 51 140-195 22-78 (104)
176 PRK13728 conjugal transfer pro 66.9 60 0.0013 28.0 9.3 31 141-171 73-107 (181)
177 cd02967 mauD Methylamine utili 65.6 8.4 0.00018 28.8 3.5 71 141-225 25-99 (114)
178 TIGR02661 MauD methylamine deh 65.4 33 0.00071 29.0 7.4 30 141-170 78-111 (189)
179 cd02998 PDI_a_ERp38 PDIa famil 64.6 20 0.00042 26.0 5.2 54 140-195 21-80 (105)
180 cd02957 Phd_like Phosducin (Ph 64.0 8.1 0.00017 29.6 3.1 57 141-203 28-89 (113)
181 cd03005 PDI_a_ERp46 PDIa famil 64.0 17 0.00038 26.4 4.8 51 140-195 19-78 (102)
182 cd03003 PDI_a_ERdj5_N PDIa fam 63.9 6.3 0.00014 29.2 2.4 53 140-197 21-80 (101)
183 PRK15412 thiol:disulfide inter 63.6 29 0.00062 29.1 6.7 29 142-170 73-104 (185)
184 cd03002 PDI_a_MPD1_like PDI fa 63.2 28 0.0006 25.7 5.9 53 140-195 21-79 (109)
185 cd02956 ybbN ybbN protein fami 62.3 9.9 0.00021 27.6 3.2 52 141-195 16-71 (96)
186 cd02970 PRX_like2 Peroxiredoxi 62.2 19 0.00041 27.9 5.1 51 146-197 33-88 (149)
187 PTZ00102 disulphide isomerase; 62.1 56 0.0012 30.9 9.1 76 139-219 51-140 (477)
188 COG2143 Thioredoxin-related pr 62.1 32 0.00069 29.7 6.5 77 140-217 45-152 (182)
189 cd03022 DsbA_HCCA_Iso DsbA fam 61.1 11 0.00023 30.9 3.6 31 141-171 1-35 (192)
190 KOG0190 Protein disulfide isom 61.1 27 0.00058 34.8 6.8 77 141-220 46-135 (493)
191 PRK00293 dipZ thiol:disulfide 59.8 46 0.001 33.3 8.4 73 141-215 478-568 (571)
192 TIGR02739 TraF type-F conjugat 59.7 25 0.00055 31.9 6.0 62 140-201 153-226 (256)
193 cd03009 TryX_like_TryX_NRX Try 59.2 35 0.00076 26.3 6.1 19 141-159 22-40 (131)
194 cd02952 TRP14_like Human TRX-r 59.2 55 0.0012 26.1 7.2 66 141-206 25-106 (119)
195 cd03021 DsbA_GSTK DsbA family, 59.2 14 0.0003 31.5 4.1 32 140-171 2-37 (209)
196 cd03006 PDI_a_EFP1_N PDIa fami 58.7 20 0.00043 28.1 4.6 51 140-195 32-89 (113)
197 cd03001 PDI_a_P5 PDIa family, 58.6 7.3 0.00016 28.5 2.0 50 140-194 21-76 (103)
198 PLN02309 5'-adenylylsulfate re 58.2 43 0.00093 32.9 7.7 76 138-215 366-455 (457)
199 cd03019 DsbA_DsbA DsbA family, 57.9 14 0.00031 29.7 3.8 34 139-172 17-56 (178)
200 cd02958 UAS UAS family; UAS is 57.4 57 0.0012 24.8 6.9 73 142-215 22-109 (114)
201 TIGR01130 ER_PDI_fam protein d 57.1 54 0.0012 30.5 8.0 75 140-219 21-111 (462)
202 cd03012 TlpA_like_DipZ_like Tl 56.7 39 0.00085 26.0 5.9 55 142-197 28-93 (126)
203 PF14595 Thioredoxin_9: Thiore 56.2 4.5 9.8E-05 32.7 0.5 55 139-195 43-102 (129)
204 cd03024 DsbA_FrnE DsbA family, 55.5 14 0.00031 30.6 3.4 31 141-171 1-39 (201)
205 TIGR02738 TrbB type-F conjugat 54.7 78 0.0017 26.2 7.7 30 141-170 54-87 (153)
206 PF08534 Redoxin: Redoxin; In 54.4 28 0.00062 27.2 4.9 47 148-197 40-93 (146)
207 KOG0910 Thioredoxin-like prote 54.2 20 0.00043 30.3 4.0 60 140-203 64-128 (150)
208 PRK13703 conjugal pilus assemb 53.2 35 0.00075 30.9 5.7 62 140-201 146-219 (248)
209 COG3019 Predicted metal-bindin 52.3 42 0.00091 28.2 5.6 70 138-217 25-104 (149)
210 cd03011 TlpA_like_ScsD_MtbDsbE 51.2 43 0.00094 25.2 5.3 21 140-160 23-43 (123)
211 smart00594 UAS UAS domain. 51.1 1.1E+02 0.0023 23.9 7.6 61 140-201 30-99 (122)
212 TIGR00424 APS_reduc 5'-adenyly 50.3 63 0.0014 31.9 7.4 72 140-215 374-461 (463)
213 cd03010 TlpA_like_DsbE TlpA-li 50.1 73 0.0016 24.3 6.5 22 141-162 29-50 (127)
214 cd03025 DsbA_FrnE_like DsbA fa 49.7 25 0.00053 28.9 4.0 31 140-170 2-38 (193)
215 cd02964 TryX_like_family Trypa 48.8 1E+02 0.0022 23.9 7.3 20 141-160 21-40 (132)
216 PF13462 Thioredoxin_4: Thiore 48.8 16 0.00036 28.8 2.7 35 139-173 14-56 (162)
217 PTZ00056 glutathione peroxidas 47.5 47 0.001 28.4 5.5 74 141-217 43-129 (199)
218 KOG3425 Uncharacterized conser 46.6 50 0.0011 27.1 5.1 69 147-215 43-121 (128)
219 cd02965 HyaE HyaE family; HyaE 45.5 25 0.00054 28.0 3.2 62 139-205 29-98 (111)
220 PF00578 AhpC-TSA: AhpC/TSA fa 45.1 32 0.00069 25.8 3.7 50 147-197 36-90 (124)
221 TIGR00385 dsbE periplasmic pro 44.3 69 0.0015 26.4 5.8 30 141-170 67-99 (173)
222 cd02987 Phd_like_Phd Phosducin 44.1 27 0.00059 29.4 3.4 59 141-203 87-148 (175)
223 TIGR01626 ytfJ_HI0045 conserve 43.8 67 0.0015 27.7 5.8 27 140-166 60-91 (184)
224 cd02966 TlpA_like_family TlpA- 42.1 61 0.0013 23.0 4.6 22 140-161 22-43 (116)
225 cd05295 MDH_like Malate dehydr 41.4 59 0.0013 32.0 5.7 73 147-219 2-87 (452)
226 cd03018 PRX_AhpE_like Peroxire 41.1 56 0.0012 25.5 4.7 49 146-197 38-93 (149)
227 cd02971 PRX_family Peroxiredox 40.7 51 0.0011 25.3 4.3 55 141-197 25-88 (140)
228 cd03017 PRX_BCP Peroxiredoxin 40.7 64 0.0014 24.8 4.9 48 147-197 34-88 (140)
229 COG2761 FrnE Predicted dithiol 40.5 41 0.00089 30.1 4.1 28 139-166 6-37 (225)
230 cd02962 TMX2 TMX2 family; comp 40.0 35 0.00076 28.3 3.4 21 141-161 51-71 (152)
231 cd02995 PDI_a_PDI_a'_C PDIa fa 39.0 30 0.00064 25.0 2.6 22 140-161 21-42 (104)
232 PHA03075 glutaredoxin-like pro 38.2 39 0.00085 27.6 3.2 32 139-170 3-34 (123)
233 cd02968 SCO SCO (an acronym fo 37.3 1.3E+02 0.0029 23.0 6.2 69 141-219 26-107 (142)
234 PTZ00102 disulphide isomerase; 36.2 58 0.0013 30.8 4.7 74 140-218 378-466 (477)
235 cd00340 GSH_Peroxidase Glutath 35.3 58 0.0013 26.1 3.9 55 141-196 26-93 (152)
236 PLN02399 phospholipid hydroper 34.5 1E+02 0.0022 27.5 5.7 15 141-155 103-117 (236)
237 cd03065 PDI_b_Calsequestrin_N 34.2 1.9E+02 0.0041 23.0 6.7 70 141-216 31-118 (120)
238 PF06110 DUF953: Eukaryotic pr 33.3 1.6E+02 0.0035 23.6 6.1 62 147-208 36-107 (119)
239 cd02992 PDI_a_QSOX PDIa family 33.0 35 0.00075 26.3 2.2 53 140-195 22-83 (114)
240 KOG0907 Thioredoxin [Posttrans 32.4 1.8E+02 0.0039 22.6 6.2 54 144-202 28-86 (106)
241 KOG2454 Betaine aldehyde dehyd 31.9 73 0.0016 31.3 4.5 77 143-229 226-302 (583)
242 cd02982 PDI_b'_family Protein 31.1 39 0.00085 24.6 2.1 53 140-195 15-73 (103)
243 KOG0191 Thioredoxin/protein di 30.4 90 0.0019 29.2 4.9 81 140-223 165-258 (383)
244 cd02986 DLP Dim1 family, Dim1- 30.3 49 0.0011 26.5 2.6 49 144-195 21-73 (114)
245 PF06053 DUF929: Domain of unk 30.2 39 0.00085 30.7 2.3 21 141-161 62-82 (249)
246 cd02969 PRX_like1 Peroxiredoxi 29.7 1.4E+02 0.0029 24.3 5.3 20 141-160 29-48 (171)
247 cd04911 ACT_AKiii-YclM-BS_1 AC 28.9 55 0.0012 24.4 2.6 21 150-170 16-36 (76)
248 COG0526 TrxA Thiol-disulfide i 27.8 49 0.0011 22.8 2.1 18 146-163 41-58 (127)
249 PF06953 ArsD: Arsenical resis 27.5 1.5E+02 0.0032 24.0 5.0 76 138-215 1-100 (123)
250 COG5515 Uncharacterized conser 27.1 45 0.00097 24.3 1.7 22 140-161 2-27 (70)
251 cd02960 AGR Anterior Gradient 26.3 55 0.0012 26.7 2.3 19 140-158 26-44 (130)
252 PRK14018 trifunctional thiored 26.0 1.5E+02 0.0032 29.8 5.7 19 143-161 62-80 (521)
253 cd03007 PDI_a_ERp29_N PDIa fam 25.6 3.4E+02 0.0073 21.6 6.7 77 140-216 21-115 (116)
254 cd03014 PRX_Atyp2cys Peroxired 25.3 1.4E+02 0.0031 23.1 4.6 57 141-197 29-90 (143)
255 PRK00522 tpx lipid hydroperoxi 24.6 1.6E+02 0.0034 24.2 4.8 57 141-197 47-108 (167)
256 PF13899 Thioredoxin_7: Thiore 24.0 67 0.0014 23.0 2.2 20 140-159 20-39 (82)
257 PRK09266 hypothetical protein; 23.9 1.3E+02 0.0028 26.6 4.5 67 154-222 196-263 (266)
258 PTZ00256 glutathione peroxidas 23.7 1.8E+02 0.0039 24.2 5.1 15 142-156 46-60 (183)
259 PRK09437 bcp thioredoxin-depen 23.7 1.6E+02 0.0034 23.3 4.6 54 141-197 33-95 (154)
260 PTZ00062 glutaredoxin; Provisi 23.2 3.4E+02 0.0073 23.7 6.8 68 141-219 21-96 (204)
261 TIGR02540 gpx7 putative glutat 23.2 1.5E+02 0.0032 23.7 4.3 17 141-157 26-42 (153)
262 PLN02412 probable glutathione 22.7 2E+02 0.0043 23.6 5.1 14 142-155 34-47 (167)
263 cd03015 PRX_Typ2cys Peroxiredo 22.1 1.6E+02 0.0035 24.0 4.5 14 146-159 39-52 (173)
264 PF06764 DUF1223: Protein of u 21.5 91 0.002 27.3 2.9 22 141-162 2-23 (202)
265 TIGR01764 excise DNA binding d 21.1 1.6E+02 0.0034 18.2 3.4 27 187-215 23-49 (49)
266 PF13905 Thioredoxin_8: Thiore 20.0 1.1E+02 0.0023 21.9 2.7 74 142-225 6-86 (95)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=1e-19 Score=133.45 Aligned_cols=76 Identities=58% Similarity=1.135 Sum_probs=68.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
++||+++.||+|++|+++|.++||+|+.+++. .+++..+++.+.||.++||+|++.++|.+|+||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~-~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCP-KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECC-CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999874 33445788999999999999998656799999999999999986
No 2
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.74 E-value=7.7e-18 Score=122.75 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=66.8
Q ss_pred EEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCC
Q 026628 143 IYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (235)
Q Consensus 143 LY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~ 219 (235)
||++..||||+|||++|.++||+|+.+++... ..++++.+.||.++||+|++ +|.+|+||.+|++||+++|++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~--~~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE--EKRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT--STSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc--cchhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCC
Confidence 89999999999999999999999999986432 23789999999999999997 699999999999999999985
No 3
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.73 E-value=1.7e-17 Score=119.10 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=65.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
++||+++.||+|++|+++|+++|++|+.+.+. .++++..++|.++||.++||+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999998763 345567799999999999999998 68999999999999974
No 4
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.73 E-value=2.6e-17 Score=117.66 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=65.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
++||++..||+|++++++|+++|++|+.+.+.. .+..++|+++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDP--DNPPEDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCC--CCCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999999988643 245678999999999999998 6789999999999999986
No 5
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.72 E-value=2.6e-17 Score=120.26 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=64.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||++..||+|++||++|+++|++|+.+.+. ..+++..++|.++||.++||+|++ +|.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999998753 334556788999999999999998 7899999999999995
No 6
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.70 E-value=1.1e-16 Score=117.53 Aligned_cols=78 Identities=29% Similarity=0.475 Sum_probs=68.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCC-CCeEeeCHHHHHHHHHhhhC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPN-TGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn-~G~~L~ES~aIi~YL~~~yg 218 (235)
++||+++. |+|++||++|+++||+|+.+.+.. .+.+..++|.++||.++||+|++++ +|..|+||.+|++||+++|+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 79999986 999999999999999999987643 3455678999999999999999842 18999999999999999997
Q ss_pred C
Q 026628 219 D 219 (235)
Q Consensus 219 ~ 219 (235)
.
T Consensus 81 ~ 81 (81)
T cd03048 81 K 81 (81)
T ss_pred C
Confidence 3
No 7
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.70 E-value=9.7e-17 Score=137.34 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=74.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~ 219 (235)
.++||++..||+|++|+++|+++|++|+.+.+.. .+..++|+++||.++||+|+| +|.+|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~--~~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK--DNLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc--ccCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 4899999999999999999999999999988743 345679999999999999998 789999999999999999985
Q ss_pred -CCCCccc
Q 026628 220 -GSVPFML 226 (235)
Q Consensus 220 -~~~P~~l 226 (235)
.++|.+.
T Consensus 86 ~~l~p~~~ 93 (211)
T PRK09481 86 PPLMPVYP 93 (211)
T ss_pred CCCCCCCH
Confidence 4777653
No 8
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.69 E-value=9e-17 Score=114.31 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=64.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||+++.||+|+++|++|+++|++|+.+.+.. .+++..++|.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 589999999999999999999999999987642 334556889999999999999854 6789999999999995
No 9
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.69 E-value=1.8e-16 Score=114.58 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=65.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
++||+++.||+|+++|++|+++|++|+.+.+.. .+++..++|.++||.++||+|++ +|..|+||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 789999999999999999999999999987543 33455688999999999999998 689999999999999874
No 10
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=1.6e-16 Score=113.20 Aligned_cols=72 Identities=24% Similarity=0.428 Sum_probs=64.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||+++.||+|++||++|+++|++|+.+.+.. .+++..++|.++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 589999999999999999999999999988642 44566789999999999999998 6899999999999984
No 11
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.69 E-value=1.7e-16 Score=115.21 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=66.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
++||++..|++|++|+++|+++|++|+.+.+.. ++++..++|.++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 579999999999999999999999999987643 34455678999999999999998 6789999999999999986
No 12
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.68 E-value=1.9e-16 Score=114.47 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=64.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCC-CceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~-~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
|+||++..||+|+++|++|+++|++|+.+.+.. .+..++|.+.||. ++||+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~--~~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDL--GNKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCc--ccCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 589999999999999999999999999987532 2446789999995 99999998 6899999999999999875
No 13
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.67 E-value=2.8e-16 Score=114.15 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=63.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCC--CCeEeeCHHHHHHHHHhhh
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPN--TGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn--~G~~L~ES~aIi~YL~~~y 217 (235)
+++||+++.||||++||.+|.++||+|+.+.+.. ...+++ +.+|.++||+|++.+ +|.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~---~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP---VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc---hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4899999999999999999999999999988521 123443 679999999998742 4789999999999999986
Q ss_pred C
Q 026628 218 G 218 (235)
Q Consensus 218 g 218 (235)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 14
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.67 E-value=2.8e-16 Score=113.06 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=61.6
Q ss_pred EEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
+||++..||||++|+++|+++|++|+.+.+... ...++|+++||.++||+|+++ +|..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~--~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK--NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC--CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 799999999999999999999999999886432 235789999999999999884 588999999999997
No 15
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.1e-16 Score=134.61 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=75.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
++||+...||+|+||+++|.++|++|+.+.+....++..++|+++||.++||+|+++ +|.+|+||.+|++||+++|+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCCC
Confidence 589999999999999999999999999998644335667899999999999999985 3449999999999999999986
Q ss_pred -CCCccc
Q 026628 221 -SVPFML 226 (235)
Q Consensus 221 -~~P~~l 226 (235)
++|.+.
T Consensus 80 ~l~p~~~ 86 (211)
T COG0625 80 PLLPADP 86 (211)
T ss_pred CcCCCCc
Confidence 888764
No 16
>PRK15113 glutathione S-transferase; Provisional
Probab=99.67 E-value=3.9e-16 Score=133.90 Aligned_cols=85 Identities=16% Similarity=0.255 Sum_probs=74.0
Q ss_pred CeEEEEcC--CCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 140 PIEIYEYE--SCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 140 ~ltLY~~e--~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
+++||++. .||+|++|+++|.++||+|+.+.+. .++++..++|+++||.++||+|+| +|.+|+||.+|++||+++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLEER 82 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHHHH
Confidence 47999976 6999999999999999999998764 335566789999999999999999 789999999999999999
Q ss_pred hCC-C---CCCccc
Q 026628 217 YGD-G---SVPFML 226 (235)
Q Consensus 217 yg~-~---~~P~~l 226 (235)
|++ + ++|.+.
T Consensus 83 ~~~~~~~~l~p~~~ 96 (214)
T PRK15113 83 FAPPAWERIYPADL 96 (214)
T ss_pred cCCCCccccCCCCH
Confidence 985 3 777653
No 17
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.65 E-value=6.1e-16 Score=110.91 Aligned_cols=71 Identities=30% Similarity=0.524 Sum_probs=60.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
++||++..||||++||++|.++|++|+.+.+... . .....+.+|.++||+|+++ +|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~-~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND-D--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC-c--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999886422 2 2345678999999999873 48999999999999974
No 18
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.65 E-value=7.5e-16 Score=112.05 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=65.1
Q ss_pred EEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
+||++..||+|+++|++|+++|++|+.+.+....++..++|+++||.++||+|+++ +|..|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 69999999999999999999999999988654434567899999999999999974 57899999999999975
No 19
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.64 E-value=5.1e-16 Score=112.71 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=64.7
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
+++||++..|++|++||++|+++|++|+.+.+.. ++..+++.++||.++||+|+| +|..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY--EEWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH--HHhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 3799999999999999999999999999988633 234567999999999999998 789999999999999864
No 20
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.63 E-value=1.4e-15 Score=110.42 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=65.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg 218 (235)
++||+++.| +|++||++|+++|++|+.+.+. .++++..++|+++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999976 5999999999999999998753 3344567899999999999999983 48899999999999999875
No 21
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.63 E-value=1.4e-15 Score=109.73 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=64.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||+++.||+|++||++|+++|++|+.+.+.. .+++..++|.++||.++||+|+| +|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 489999999999999999999999999987532 33456789999999999999998 6789999999999984
No 22
>PLN02473 glutathione S-transferase
Probab=99.63 E-value=1.3e-15 Score=129.62 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=74.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg 218 (235)
-++||++..||+|++|+++|+++||+|+.+.+. ..+++..++++++||.++||+|+| +|.+|+||.+|++||+++|+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKYA 79 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHcC
Confidence 589999999999999999999999999998753 344567889999999999999998 78999999999999999997
Q ss_pred C---CCCCcc
Q 026628 219 D---GSVPFM 225 (235)
Q Consensus 219 ~---~~~P~~ 225 (235)
+ .++|.+
T Consensus 80 ~~~~~l~p~~ 89 (214)
T PLN02473 80 DQGTDLLGKT 89 (214)
T ss_pred CcCCCCCCCC
Confidence 4 367765
No 23
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.63 E-value=1.9e-15 Score=108.77 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=66.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC-CCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN-GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~-g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg 218 (235)
++||++.. ++|++||++|+++|++|+.+.+... +.+..++|.++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 47999886 6899999999999999999876432 3456789999999999999998 78999999999999999985
No 24
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.62 E-value=1.6e-15 Score=116.69 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 147 e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
..||||++||++|.++||+|+..++... +..++|+++||.++||+|+| +|.+++||.+|++||+++|..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~--~~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK--RKPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC--CCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 4699999999999999999999886432 23578999999999999999 7899999999999999998764
No 25
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=1.8e-15 Score=108.88 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=62.6
Q ss_pred eEEEEcCCCcchHHHHHHHHH--cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAV--LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~e--lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||++..||+|+++|++|.+ +|++|+.+.+.. .+..++|+++||.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP--WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc--ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999988632 3456789999999999999864 6789999999999985
No 26
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.62 E-value=3.4e-15 Score=112.54 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=63.9
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
..++||++..||+|++|+++|.++|++|+.+.+... +..++|.+.||.++||+|+++ +|..|+||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~--~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK--DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 469999999999999999999999999999886432 234679999999999999973 4789999999999995
No 27
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.61 E-value=3e-15 Score=106.78 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=64.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||++..|++|+++|++|.++|++|+.+.+. .++.+..++|.++||.++||+|++ +|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999998753 334556789999999999999998 6889999999999985
No 28
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1e-15 Score=130.79 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEEC--CCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC--PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v--~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
.+..||++..|.++++||++|..+||||+++++ .++++....+|.++||+++||.|++ +|.+|.||.|||+||+++
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEET 81 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhc
Confidence 468999999999999999999999999999985 3444566779999999999999999 899999999999999999
Q ss_pred hCC-CCCCcccccC
Q 026628 217 YGD-GSVPFMLSLG 229 (235)
Q Consensus 217 yg~-~~~P~~l~~~ 229 (235)
|++ .++|+++.-.
T Consensus 82 ~P~ppLLP~d~~KR 95 (217)
T KOG0868|consen 82 YPDPPLLPKDPHKR 95 (217)
T ss_pred CCCCCCCCcCHHHH
Confidence 997 5999987543
No 29
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.60 E-value=2.2e-15 Score=108.98 Aligned_cols=68 Identities=28% Similarity=0.454 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHcCCCeEEEECC--CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 148 SCPFCRKVREIVAVLDLDVLYYPCP--RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 148 ~cP~CrkVR~aL~elgL~ye~~~v~--~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
.||||+||+++|+++||+|+...+. ..+....++|.+.||.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 5999999999999999999987652 2334455899999999999999986 788999999999999974
No 30
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.60 E-value=4e-15 Score=108.37 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=60.2
Q ss_pred eEEEEcC-------CCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 141 ltLY~~e-------~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
++||++. .||+|++|+++|+++|++|+.+.+.. .+++|.++||+|++ +|..|+||.+|++||
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHHH
Confidence 6899998 57999999999999999999887521 26899999999998 689999999999999
Q ss_pred HhhhC
Q 026628 214 VGKYG 218 (235)
Q Consensus 214 ~~~yg 218 (235)
+++||
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99986
No 31
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.60 E-value=2.1e-15 Score=108.42 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=62.2
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
++||+++.|++|++||++|+++|++|+.+.+... .....+|.++||.++||+|+| +|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~-~~~~~~~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYE-EWPELDLKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHH-HhhhhhhccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999886432 122345889999999999999 68999999999999974
No 32
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.59 E-value=3.6e-15 Score=110.50 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=58.1
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEECCC-CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhC
Q 026628 147 ESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 147 e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg 218 (235)
..||+|+|||++|.++||+|+.+.+.. +.++..+++ ++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 579999999999999999999987532 223334455 88999999999983 37899999999999999975
No 33
>PRK10387 glutaredoxin 2; Provisional
Probab=99.58 E-value=5.3e-15 Score=125.12 Aligned_cols=79 Identities=28% Similarity=0.497 Sum_probs=65.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
++||++..||+|+|||++|+++||+|+.+.+... ++.. ..+.||.++||+|+.+ +|.+|+||.+|++||+++|++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~-~~~~--~~~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND-DEAT--PIRMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC-chhh--HHHhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCCc
Confidence 5899999999999999999999999999886322 2222 2678999999999532 7899999999999999999875
Q ss_pred CCC
Q 026628 221 SVP 223 (235)
Q Consensus 221 ~~P 223 (235)
.++
T Consensus 77 ~l~ 79 (210)
T PRK10387 77 LLT 79 (210)
T ss_pred cCC
Confidence 443
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.58 E-value=1.1e-14 Score=99.96 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=61.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
++||++..||+|+++|++|+++|++|+.+.+...... ..++.+.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE-QEEFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC-CHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999886432222 226889999999999998 6899999999999984
No 35
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.57 E-value=1.3e-14 Score=124.06 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=68.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeC---CCC--eEeeCHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDP---NTG--VSMYESDNIIKYLV 214 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDp---n~G--~~L~ES~aIi~YL~ 214 (235)
++||+.. +++|++|+++|+++||+|+.+.+. .++++..++|+++||.++||+|+|. ++| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 7899887 799999999999999999998753 3456667899999999999999973 245 58999999999999
Q ss_pred hhhCCCCCCc
Q 026628 215 GKYGDGSVPF 224 (235)
Q Consensus 215 ~~yg~~~~P~ 224 (235)
++|+. ..|.
T Consensus 81 ~~~~~-l~p~ 89 (215)
T PRK13972 81 EKTGL-FLSH 89 (215)
T ss_pred HhcCC-CCCC
Confidence 99962 4453
No 36
>PLN02395 glutathione S-transferase
Probab=99.56 E-value=2e-14 Score=122.28 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=71.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg 218 (235)
.++||+...| +++||+++|.++||+|+.+.+. ..+++..++|+++||.++||+|+| +|.+|+||.+|++||+++|+
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHcC
Confidence 5899997765 5899999999999999998753 344566789999999999999998 77899999999999999997
Q ss_pred C---CCCCccc
Q 026628 219 D---GSVPFML 226 (235)
Q Consensus 219 ~---~~~P~~l 226 (235)
. .++|.+.
T Consensus 79 ~~~~~l~p~~~ 89 (215)
T PLN02395 79 SQGPDLLGKTI 89 (215)
T ss_pred CCCcCcCCCCh
Confidence 4 4777653
No 37
>PRK11752 putative S-transferase; Provisional
Probab=99.53 E-value=3.7e-14 Score=126.52 Aligned_cols=84 Identities=21% Similarity=0.432 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc------CCCeEEEECC-CCCCCChhHHHhhCCCCceeEEEeCCC--CeEeeCHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNT--GVSMYESDNII 210 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el------gL~ye~~~v~-~~g~~~r~e~l~inp~~qVPvLvDpn~--G~~L~ES~aIi 210 (235)
+++||+.. ||+|++|+++|+|+ |++|+.+.+. ..+++..++|+++||.++||+|+++++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 69999975 99999999999997 8999987753 344556789999999999999998532 47999999999
Q ss_pred HHHHhhhCCCCCCcc
Q 026628 211 KYLVGKYGDGSVPFM 225 (235)
Q Consensus 211 ~YL~~~yg~~~~P~~ 225 (235)
+||+++|+. ++|.+
T Consensus 123 ~YL~~~~~~-L~P~~ 136 (264)
T PRK11752 123 LYLAEKFGA-FLPKD 136 (264)
T ss_pred HHHHHhcCC-cCCCC
Confidence 999999974 67754
No 38
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.53 E-value=2.8e-14 Score=122.63 Aligned_cols=76 Identities=29% Similarity=0.498 Sum_probs=65.1
Q ss_pred EEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
+||++..||||+|||++|.++|++|+.+++.. +++ ....+.||.++||+|+ | +|.+|+||.+|++||+++|+..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~-~~~--~~~~~~np~g~vP~l~~~--~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLN-DDE--ETPIRMIGAKQVPILQKD--DGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCC-Ccc--hhHHHhcCCCCcceEEee--CCeEeccHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999987633 222 2347899999999998 6 7899999999999999999864
Q ss_pred CC
Q 026628 221 SV 222 (235)
Q Consensus 221 ~~ 222 (235)
.+
T Consensus 76 ~~ 77 (209)
T TIGR02182 76 LL 77 (209)
T ss_pred cC
Confidence 43
No 39
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.53 E-value=6.1e-14 Score=103.62 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=61.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhC-----CCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-----GKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~in-----p~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
+++||++..++.|++||++|.++|++|+.+.+.. .+++.+.+ +.++||+|++ +|..|+||.||++||.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~-----~~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIES-----AEDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIA 73 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEecc-----HHHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHH
Confidence 3689999999999999999999999999987632 13343333 5899999998 7899999999999999
Q ss_pred hhhC
Q 026628 215 GKYG 218 (235)
Q Consensus 215 ~~yg 218 (235)
++||
T Consensus 74 ~~~~ 77 (79)
T cd03077 74 GKYN 77 (79)
T ss_pred HHcC
Confidence 9987
No 40
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.51 E-value=7.1e-14 Score=104.20 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=60.9
Q ss_pred EEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCCCC-hhHHHhh-----CCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNF-RPKVLQM-----GGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~~~-r~e~l~i-----np~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
+||+|..++.|+++|++|+++|++|+.+.+.. ++++. .+++.+. +|.++||+|+| +|..|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 79999999999999999999999999987642 22322 2455432 29999999998 7899999999999999
Q ss_pred hhh
Q 026628 215 GKY 217 (235)
Q Consensus 215 ~~y 217 (235)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 41
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.51 E-value=5.1e-14 Score=119.12 Aligned_cols=82 Identities=26% Similarity=0.383 Sum_probs=71.2
Q ss_pred EEEEcCCCcchHHHHHHHHHcCCCeEEEECCC--CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCC
Q 026628 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPR--NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~--~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~ 219 (235)
+||++..||+|++||++|.++||+|+.+.+.. .+.+..+++.++||.++||+|++ +|.+|+||.+|++||+++|+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 48999999999999999999999999987643 22445678999999999999998 789999999999999999985
Q ss_pred -CCCCcc
Q 026628 220 -GSVPFM 225 (235)
Q Consensus 220 -~~~P~~ 225 (235)
+++|.+
T Consensus 79 ~~l~p~~ 85 (210)
T TIGR01262 79 PPLLPAD 85 (210)
T ss_pred CCCCCCC
Confidence 477753
No 42
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.49 E-value=8.1e-14 Score=117.62 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=69.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCC-
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD- 219 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~- 219 (235)
++||++..||++++||++|+++||+|+.+.+.. ....+++.++||.++||+|+++ +|.+|+||.+|++||+++|++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~--~~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELP--YNADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCC--CCCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 489999999999999999999999999987532 1223567888999999999843 688999999999999999865
Q ss_pred CCCCccc
Q 026628 220 GSVPFML 226 (235)
Q Consensus 220 ~~~P~~l 226 (235)
.++|.+.
T Consensus 78 ~l~p~~~ 84 (202)
T PRK10357 78 AMLPRDP 84 (202)
T ss_pred CCCCCCH
Confidence 4777653
No 43
>PLN02378 glutathione S-transferase DHAR1
Probab=99.49 E-value=7.4e-14 Score=120.15 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=62.8
Q ss_pred EcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 145 ~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
.+..||||++|+++|+++|++|+.+.+... +..++|+++||.++||+|++ +|.+|+||.+|++||+++|++.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~--~~~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~ 87 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS--DKPQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDP 87 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc--cCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCC
Confidence 455699999999999999999999886432 23568999999999999998 6789999999999999999853
No 44
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.1e-13 Score=121.32 Aligned_cols=86 Identities=29% Similarity=0.485 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEEC-CCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC-PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v-~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
+.++||++..++.|++|.++++++|++|+.+.+ ...+++..++|+++||.++||+|+| +|..++||.||+.||.++|
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 468999999999999999999999999999864 4567889999999999999999999 6999999999999999999
Q ss_pred C--CC-CCCccc
Q 026628 218 G--DG-SVPFML 226 (235)
Q Consensus 218 g--~~-~~P~~l 226 (235)
+ ++ ++|.+.
T Consensus 79 ~~~~~~l~p~~~ 90 (226)
T KOG0867|consen 79 GPLGGILLPKDL 90 (226)
T ss_pred CCCCcccCCcCH
Confidence 7 23 677665
No 45
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.48 E-value=1.1e-13 Score=122.82 Aligned_cols=76 Identities=11% Similarity=0.158 Sum_probs=66.1
Q ss_pred cCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCCCCCcc
Q 026628 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPFM 225 (235)
Q Consensus 146 ~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~~~P~~ 225 (235)
...||+|++|+++|.++||+|+.+.+... +..++|+++||.++||+|+| +|.+|+||.+|++||+++|+++.+|..
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~--~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~~~p~l 91 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK--RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPPRYPKL 91 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC--CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCCCCCCC
Confidence 56799999999999999999999886432 23689999999999999999 789999999999999999986555543
No 46
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.48 E-value=1.5e-13 Score=98.83 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=56.8
Q ss_pred eEEEEcC-------CCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 141 ltLY~~e-------~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
++||.+. .||+|++|+++|+++||+|+.+.+... .++|.++||+|++ +|.+++||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 4678776 899999999999999999999886321 1789999999998 789999999999999
Q ss_pred Hhh
Q 026628 214 VGK 216 (235)
Q Consensus 214 ~~~ 216 (235)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 875
No 47
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.48 E-value=2e-13 Score=100.15 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=59.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECC-CCCCCChhHHHhhCCC-CceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~-~~g~~~r~e~l~inp~-~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
.++||.+.+ +|.++|++|+++|++|+.+.+. ..+++..++|.+.||. ++||+|+|+ +|..++||.||++||++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 355555555 8999999999999999998754 3455566999999999 999999994 49999999999999985
No 48
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.47 E-value=2.8e-13 Score=98.52 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=58.8
Q ss_pred EcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 145 ~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
....|++|++||++|+++|++|+.+.+........++|.++||.++||+|++ +|.+|+||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 3467999999999999999999998764433345689999999999999998 6889999999999984
No 49
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.44 E-value=2.7e-13 Score=113.92 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=66.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCC-CCC-CChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGP-NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~-~g~-~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg 218 (235)
|+||+...+ ++++|+++|+++||+|+.+.+.. .++ +..++|.++||.++||+|+++ +|.+|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 589998865 69999999999999999987532 222 345789999999999999853 78999999999999999998
Q ss_pred CC-CC
Q 026628 219 DG-SV 222 (235)
Q Consensus 219 ~~-~~ 222 (235)
+. ++
T Consensus 79 ~~~l~ 83 (201)
T PRK10542 79 DRQLL 83 (201)
T ss_pred ccccC
Confidence 53 45
No 50
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.6e-13 Score=118.01 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhC-CCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~in-p~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
..++||++-.|||.+||+++|+++||+|++++.... +..+.+++.| +.++||+|++ +|..++||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~--~Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT--NKSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC--CCCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 469999999999999999999999999999885332 3678899999 7889999999 7888999999999999999
Q ss_pred CC--CCCCcccc
Q 026628 218 GD--GSVPFMLS 227 (235)
Q Consensus 218 g~--~~~P~~l~ 227 (235)
.+ ..+|+|.-
T Consensus 84 ~~~~~iLP~DPy 95 (231)
T KOG0406|consen 84 PSGPPILPSDPY 95 (231)
T ss_pred cCCCCCCCCCHH
Confidence 84 48998754
No 51
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.39 E-value=1.2e-12 Score=111.80 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=63.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCC--ChhHHH--hhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN--FRPKVL--QMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~--~r~e~l--~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
+++||++..+++|++||++|+++|++|+.+.+....+. ..+++. +.||.++||+|++ +|.+|+||.||++||++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRYLSK 81 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHHHHH
Confidence 48999999999999999999999999999875211111 112222 4799999999999 78999999999999999
Q ss_pred hhCC
Q 026628 216 KYGD 219 (235)
Q Consensus 216 ~yg~ 219 (235)
+|+.
T Consensus 82 ~~~~ 85 (205)
T PTZ00057 82 KYKI 85 (205)
T ss_pred HcCC
Confidence 9973
No 52
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.38 E-value=1.4e-12 Score=117.15 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=62.0
Q ss_pred cCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 146 ~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
.-.||||++|+++|+++||+|+++.+... +..++|+++||.++||+|++ +|.+|+||.+|++||+++|+..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~--~~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~ 140 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT--NKPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDP 140 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC--cCCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCC
Confidence 44599999999999999999999876432 34678999999999999998 5679999999999999999863
No 53
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.35 E-value=5.6e-12 Score=93.07 Aligned_cols=73 Identities=19% Similarity=0.354 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
...++||..++||+|++++.+|.++|++|+.+++... ...+++.+.++..+||+++. +|..|.++++|.+||+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 4579999999999999999999999999999997432 23457778899999999988 7899999999999984
No 54
>PRK10638 glutaredoxin 3; Provisional
Probab=99.30 E-value=1.3e-11 Score=91.64 Aligned_cols=75 Identities=16% Similarity=0.370 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
|.+++||..++||||++++.+|.++|++|+++++.. +...++++.+.+|..+||+++. +|..+...+++..+-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~-~~~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDG-DAAKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHHc
Confidence 457999999999999999999999999999999743 2335678999999999999988 78999999998887543
No 55
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.28 E-value=2.6e-11 Score=87.41 Aligned_cols=71 Identities=17% Similarity=0.366 Sum_probs=62.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
+++||..++||+|.+++.+|.++|++|+.+++... . ...++.+.++..+||+++. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999997433 2 3456777889999999988 7889999999999984
No 56
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.20 E-value=1.6e-11 Score=110.36 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEEC-CCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC-PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 137 p~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v-~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
+...+.||+++.+-.++|||+++.|+||+|+.++| +..+++..++|+.+||.+.||||++ +..+|.|+..||+|+++
T Consensus 23 ~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~--g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 23 PRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH--GDNIISDYTQIIDYVER 100 (325)
T ss_pred chhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec--CCeecccHHHHHHHHHH
Confidence 44459999999999999999999999999999885 5678899999999999999999999 77899999999999999
Q ss_pred hhCCC
Q 026628 216 KYGDG 220 (235)
Q Consensus 216 ~yg~~ 220 (235)
+|-++
T Consensus 101 tf~ge 105 (325)
T KOG4420|consen 101 TFTGE 105 (325)
T ss_pred hhccc
Confidence 99653
No 57
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.5e-11 Score=102.39 Aligned_cols=76 Identities=29% Similarity=0.501 Sum_probs=64.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~ 220 (235)
++||.++.||||.++|+..-.+|||++.+... ++++.. =.++-|..+||+|+-+ +|..|.||.+|++|+.+.+|..
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~-nDDe~T--p~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLL-NDDEET--PIRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheec-cCcccC--hhhhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 57999999999999999999999999998753 333222 2567799999999865 8999999999999999999964
No 58
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.12 E-value=2.6e-10 Score=82.51 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=60.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~ 211 (235)
.++||+.++||+|++++.+|+++||+|+.+++. .++..++++.++++..+||+++. +|..+..-+++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~-~~~~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINID-IFPERKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECC-CCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 489999999999999999999999999999974 33456788999999999999988 6788888777654
No 59
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.10 E-value=4e-10 Score=79.00 Aligned_cols=72 Identities=18% Similarity=0.386 Sum_probs=60.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEe--eCHHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM--YESDNIIKYLV 214 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L--~ES~aIi~YL~ 214 (235)
+++||+..+||+|++++.+|.+.+++|+.+++.. .+...+++.+.++...||+|++ +|..+ ++..+|.+||.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~-~~~~~~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEK-DSAAREEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLLE 74 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccC-CHHHHHHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHhC
Confidence 3899999999999999999999999999988643 3344567888999999999988 56666 78888888763
No 60
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.10 E-value=4.6e-10 Score=78.06 Aligned_cols=70 Identities=13% Similarity=0.394 Sum_probs=61.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~Y 212 (235)
+++||...+||+|++++.+|.+++++|+.+++... +..++++.++++..++|+++. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED-GELREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 47899999999999999999999999999987433 335778889999999999988 78999999988764
No 61
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.07 E-value=8e-10 Score=82.27 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCcchHHHHHHHHH-----cCCCeEEEECCCCCCCChhHHHhhCCC--CceeEEEeCCCCeEeeCHHHHHH
Q 026628 139 KPIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIK 211 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~e-----lgL~ye~~~v~~~g~~~r~e~l~inp~--~qVPvLvDpn~G~~L~ES~aIi~ 211 (235)
|.+++|..++||+|.+++.+|.+ .+++|+.+++...+ ...+++.+..+. ..||+++. +|..+.+.++|.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~-~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG-ISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh-HHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHH
Confidence 47999999999999999999999 89999999974332 235667776665 68999987 7899999999999
Q ss_pred HHHhhhC
Q 026628 212 YLVGKYG 218 (235)
Q Consensus 212 YL~~~yg 218 (235)
|+.++||
T Consensus 78 ~~~~~~~ 84 (85)
T PRK11200 78 YVKENLG 84 (85)
T ss_pred HHHHhcc
Confidence 9999886
No 62
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.07 E-value=7.2e-10 Score=79.62 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=60.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCC-ceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~-qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
+++||..+.||+|.+++.+|+++|++|+++++... +...+++.+..+.. +||+++. +|..+.+.++++++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 47999999999999999999999999999997433 34556777776666 9999988 7889999999988754
No 63
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.04 E-value=1.3e-09 Score=81.89 Aligned_cols=75 Identities=12% Similarity=0.320 Sum_probs=62.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcC-----CCeEEEECCCCCCCChhHHHhhCCC--CceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elg-----L~ye~~~v~~~g~~~r~e~l~inp~--~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
++||+.++||||.+++.+|.+++ ++|+.+++... ...++++.+..+. ..||+++. +|..+.++++|.+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~-~~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE-GISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC-HHHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 68999999999999999999984 67888876422 2235667777776 79999987 789999999999999
Q ss_pred HhhhC
Q 026628 214 VGKYG 218 (235)
Q Consensus 214 ~~~yg 218 (235)
.++|+
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 99876
No 64
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.03 E-value=9.3e-10 Score=81.67 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 147 e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
+.+++|.+++++|+++|++|+.+.. ..++ ..+|.++||+|++ +|.+|+||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~-~~~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR-ANAE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec-CCcc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 3467899999999999999998853 1111 1556799999999 788999999999999864
No 65
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.1e-09 Score=81.81 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=57.9
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHh-hCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~-inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
+.+++|..++||||.+++.+|.++|++|+++++.......++++++ .+|..+||+++. +|..+....++.++...
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 3689999999999999999999999999999875443334445555 459999999988 66677766666555443
No 66
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.00 E-value=2.3e-09 Score=76.63 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=58.7
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhC-CCCceeEEEeCCCCeEeeC--HHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYE--SDNIIKYLV 214 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~in-p~~qVPvLvDpn~G~~L~E--S~aIi~YL~ 214 (235)
+++||+.++||+|++++.+|.+++++|+.+++.. ++...+++.+++ +...||+++.. +|..+.+ ..+|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~-~~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEE-DEGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcC-CHhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 4789999999999999999999999999988643 344456777887 99999999653 5666665 577888775
No 67
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.93 E-value=3.9e-09 Score=77.05 Aligned_cols=72 Identities=17% Similarity=0.402 Sum_probs=61.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
++||..++||+|.+++.+|+++|++|+++++.. .+..++++.+.++...||+++. +|..+.+..++.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~-~~~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDG-DPALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecC-CHHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 589999999999999999999999999999743 3446778888889999999988 78889998888777654
No 68
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.90 E-value=4.6e-09 Score=73.48 Aligned_cols=63 Identities=13% Similarity=0.355 Sum_probs=52.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~E 205 (235)
++++|+..+||+|++++.+|.+++++|..+++.. +....+++.+.++..+||+|++ +|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE-DPEALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCC-CHHHHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 4799999999999999999999999999988643 3345677888999999999998 4555544
No 69
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.90 E-value=6.7e-09 Score=77.70 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
++++||..++||+|.++|.+|.++||+|+.+++.. ++...+++. .+|..+||+++..+.-..-|+-+.|.+....
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~-~~~~~~~~~-~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~~ 75 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDR-VPEAAETLR-AQGFRQLPVVIAGDLSWSGFRPDMINRLHPA 75 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCC-CHHHHHHHH-HcCCCCcCEEEECCEEEecCCHHHHHHHHHh
Confidence 36899999999999999999999999999999743 333344444 4699999999873222345666666655543
No 70
>PHA03050 glutaredoxin; Provisional
Probab=98.87 E-value=9.3e-09 Score=81.12 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCC---CeEEEECCCC--CCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHH
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL---~ye~~~v~~~--g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~ 211 (235)
.++++|..++||||.+++.+|+++++ +|+++++... +...++++.+.++..+||+++. +|..+...+++.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 46999999999999999999999999 8989887532 2234788999999999999988 7888999888776
No 71
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.8e-09 Score=90.07 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
|+.++|++|.....|..+|+.++..|++||.+.+..++. ..++....|.+|+|+|.. +|..|.+|.||++||+++|
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~--w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA--WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc--hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHh
Confidence 567999999999999999999999999999988644332 345566689999999976 6999999999999999999
Q ss_pred C
Q 026628 218 G 218 (235)
Q Consensus 218 g 218 (235)
|
T Consensus 77 g 77 (206)
T KOG1695|consen 77 G 77 (206)
T ss_pred C
Confidence 8
No 72
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.82 E-value=1.8e-08 Score=73.23 Aligned_cols=74 Identities=12% Similarity=0.394 Sum_probs=62.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCC--CCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g--~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
++++|+..+||+|.+++.+|.+++++|+++++.... .+.+.++.++++..++|+++. +|..+.+..+|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 478999999999999999999999999988864332 223456778889999999988 78999999999998765
No 73
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.79 E-value=3.2e-08 Score=76.33 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=61.8
Q ss_pred CCeEEEEc-----CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 139 KPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 139 ~~ltLY~~-----e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
.++.||.. ++||||.+++.+|.++|++|+++++. .++..++++.+.++..+||.++. +|..+...+++.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~-~~~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL-EDPEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC-CCHHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHHHH
Confidence 46999976 89999999999999999999999874 33456778888999999999988 788899988887754
Q ss_pred H
Q 026628 214 V 214 (235)
Q Consensus 214 ~ 214 (235)
.
T Consensus 89 ~ 89 (97)
T TIGR00365 89 Q 89 (97)
T ss_pred H
Confidence 3
No 74
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.77 E-value=8.5e-09 Score=71.78 Aligned_cols=59 Identities=17% Similarity=0.406 Sum_probs=50.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeE
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~ 202 (235)
++||+.++||+|.+++.+|+++|++|+++++.. .+..++++.+.++..++|+++. +|..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~-~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDE-DEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGG-SHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEccccc-chhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 589999999999999999999999999999743 2356788888889999999987 5654
No 75
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.76 E-value=2.6e-08 Score=90.77 Aligned_cols=73 Identities=27% Similarity=0.524 Sum_probs=59.0
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
-.++||+|+.||||-|||.+|...||+|++++|. +-.|.+ ++.+-..+||.|.. +|+.|.||..||.-|+...
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn---pV~r~e-Ik~SsykKVPil~~--~Geqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN---PVLRQE-IKWSSYKKVPILLI--RGEQMVDSSVIISLLATYL 161 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEec---chhhhh-ccccccccccEEEe--ccceechhHHHHHHHHHHh
Confidence 3699999999999999999999999999998862 222332 34557889999977 4667999999999886544
No 76
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.75 E-value=3e-08 Score=71.63 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=44.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEe
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvD 196 (235)
++||..++||+|++++.+|+++|++|+.+++.. ++...+++.. .+..+||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKA-QGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHH-cCCcccCEEEE
Confidence 589999999999999999999999999999743 3334455544 58889999977
No 77
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.74 E-value=5.5e-08 Score=73.64 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=62.3
Q ss_pred CCeEEEEc-----CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 139 KPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 139 ~~ltLY~~-----e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
.++++|.. ++||||.+++.+|.++|++|+.+++.. ++..++++.+.++..+||+++. +|..+.+.+++.++.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~-~~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE-DEEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC-CHHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHHH
Confidence 46899976 699999999999999999999999743 3456778889999999999988 788999999988854
Q ss_pred H
Q 026628 214 V 214 (235)
Q Consensus 214 ~ 214 (235)
.
T Consensus 85 ~ 85 (90)
T cd03028 85 E 85 (90)
T ss_pred H
Confidence 3
No 78
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.74 E-value=6.7e-08 Score=74.83 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCC--CChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGP--NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~--~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
.++++|..++||||.+++.+|.++|++|+++++..... ..++++.+.++..+||+++. +|..+...+++....
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 46999999999999999999999999999998753321 12345677789999999987 788999988877754
No 79
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.67 E-value=8.9e-08 Score=69.55 Aligned_cols=73 Identities=15% Similarity=0.389 Sum_probs=59.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCC--eEEEECCCCC--CCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLD--VLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~--ye~~~v~~~g--~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
+++|..++||+|++++.+|.+++++ |+++++.... ...++++.+.++..++|.++. +|..+.++++++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888764322 222445777788899999988 78999999999988764
No 80
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.65 E-value=1.2e-07 Score=69.56 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=49.4
Q ss_pred CCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 148 ~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
.||+|.++...|+..|++|+.+.. ..+ ..+|.+++|+|++ +|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~--~n~-------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPS--NNP-------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEec--CCC-------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 579999999999999999998753 111 3458999999999 789999999999999875
No 81
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.44 E-value=7.7e-07 Score=78.03 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=64.2
Q ss_pred CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCCCCCc
Q 026628 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPF 224 (235)
Q Consensus 147 e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~~~P~ 224 (235)
-.||||+++-+.|.+++++|.+..+... ...++|+.+.|.+++|+|.. ++.+..||..|.++|+++|+....|.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 4699999999999999999999876433 24678999999999999998 78999999999999999999765553
No 82
>PRK10824 glutaredoxin-4; Provisional
Probab=98.37 E-value=1.6e-06 Score=69.51 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=61.8
Q ss_pred CCeEEEEc-----CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 139 KPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 139 ~~ltLY~~-----e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
.++.+|.. ++||||++++.+|..+|++|..+++.. ++..+.++.+.++..+||.+.. +|..+..++++....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHH
Confidence 46889987 499999999999999999999988643 3446778889999999999988 799999999888764
Q ss_pred H
Q 026628 214 V 214 (235)
Q Consensus 214 ~ 214 (235)
.
T Consensus 92 ~ 92 (115)
T PRK10824 92 Q 92 (115)
T ss_pred H
Confidence 3
No 83
>PLN02907 glutamate-tRNA ligase
Probab=98.20 E-value=4.9e-06 Score=84.61 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=58.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~ 219 (235)
.++||..+.++ +.++.++|.++|++|+... .+|.++||+|+++ +|..|+||.||++||+++|+.
T Consensus 2 ~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 2 EAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred eEEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCCC
Confidence 38899988765 5568999999999999854 1579999999864 688999999999999999975
Q ss_pred -CCCCcc
Q 026628 220 -GSVPFM 225 (235)
Q Consensus 220 -~~~P~~ 225 (235)
.++|.+
T Consensus 66 ~~L~p~d 72 (722)
T PLN02907 66 PGFYGQD 72 (722)
T ss_pred cCCCCCC
Confidence 466754
No 84
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.16 E-value=9e-06 Score=67.70 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=59.3
Q ss_pred CeEEEEcC------CCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCC----CceeEEEeCCCCeEeeCHHHH
Q 026628 140 PIEIYEYE------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESDNI 209 (235)
Q Consensus 140 ~ltLY~~e------~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~----~qVPvLvDpn~G~~L~ES~aI 209 (235)
.++||... .||+|.+|+.+|+.++|+|+++++.+ +...++++.+..+. ..||.+.. +|..|...+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~-~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSM-DSGFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHH
Confidence 37899998 89999999999999999999999743 34567788877654 79999987 78899998888
Q ss_pred HHHH
Q 026628 210 IKYL 213 (235)
Q Consensus 210 i~YL 213 (235)
.+.-
T Consensus 78 ~~L~ 81 (147)
T cd03031 78 LRLN 81 (147)
T ss_pred HHHH
Confidence 7753
No 85
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.13 E-value=8.3e-06 Score=77.75 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhH--------HHhhCCCCceeEEEeCCCCeEeeCHHHH
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPK--------VLQMGGKKQFPYMVDPNTGVSMYESDNI 209 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e--------~l~inp~~qVPvLvDpn~G~~L~ES~aI 209 (235)
|+.+++|..++||+|.+++.+|.+.||+|+++++. +++...+. +....+..+||+++. +|..+..-+++
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~-~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLD-DDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-CChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchHH
Confidence 56799999999999999999999999999999974 22222221 122357889999987 67888888777
Q ss_pred HH
Q 026628 210 IK 211 (235)
Q Consensus 210 i~ 211 (235)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 65
No 86
>PTZ00062 glutaredoxin; Provisional
Probab=98.09 E-value=1.4e-05 Score=69.82 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=61.0
Q ss_pred CCeEEEEc-----CCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 139 KPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 139 ~~ltLY~~-----e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
.++.||.. +.||||++++..|++++++|+.+++. .++..++++.+.++..+||.+.. +|..+...+++.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~-~d~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF-EDPDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC-CCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHH
Confidence 46899977 68999999999999999999999874 34556788889999999999987 788898888877743
No 87
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.89 E-value=3.3e-05 Score=69.98 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=62.2
Q ss_pred CeEEEEcC-------CCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHH
Q 026628 140 PIEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (235)
Q Consensus 140 ~ltLY~~e-------~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~Y 212 (235)
.+-||+|+ .||||.||-.+|...+|+||.+++. +...+..|++|.++- +|..+.||+-|+.+
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~---------~~~rSr~G~lPFIEL--NGe~iaDS~~I~~~ 113 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS---------LKRRSRNGTLPFIEL--NGEHIADSDLIEDR 113 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc---------ceeeccCCCcceEEe--CCeeccccHHHHHH
Confidence 47899986 5889999999999999999998862 224567899999998 89999999999999
Q ss_pred HHhhhCCC-CCCc
Q 026628 213 LVGKYGDG-SVPF 224 (235)
Q Consensus 213 L~~~yg~~-~~P~ 224 (235)
|.++|+-. ++|.
T Consensus 114 L~~hf~~~~~L~~ 126 (281)
T KOG4244|consen 114 LRKHFKIPDDLSA 126 (281)
T ss_pred HHHHcCCCCCCCH
Confidence 99999843 2443
No 88
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=8.1e-05 Score=58.72 Aligned_cols=75 Identities=17% Similarity=0.463 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC--CCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~--g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
..++.+|.-.+||||.+++..|...++.+.+++.+.. +.+....+.++.+..+||.++. +|..+....+|+.+-.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALHK 89 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHHH
Confidence 3569999999999999999999999999999885433 2233455667889999999988 7888899999887643
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.85 E-value=7.5e-05 Score=52.37 Aligned_cols=58 Identities=17% Similarity=0.395 Sum_probs=44.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEee
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ 204 (235)
++++|..++||+|.+++..|+++ ++++..+++.. .+++.+..+...+|+++. +|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~-----~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE-----FPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc-----CHhHHHHcCCcccCEEEE--CCEEEE
Confidence 47899999999999999999876 56776666421 245677788889999987 566554
No 90
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.84 E-value=1.9e-05 Score=62.19 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=36.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG 187 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp 187 (235)
++||+.++||+|++++.+|+++|++|+++++... +..++++.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~-~~~~~el~~~~~ 46 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE-PPSKEELKKWLE 46 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC-cccHHHHHHHHH
Confidence 5899999999999999999999999999997433 334555555433
No 91
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.65 E-value=9.4e-05 Score=57.09 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=36.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG 187 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp 187 (235)
++||+.+.||+|++++.+|+++|++|+++++.. .+...+++.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLA 46 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHH
Confidence 589999999999999999999999999999743 3334556665543
No 92
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.55 E-value=0.00015 Score=58.94 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=30.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~ 172 (235)
++||+.++|++|++++.+|.+.||+|+++++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999999999999999999999999999863
No 93
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.45 E-value=0.00028 Score=55.68 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=30.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~ 172 (235)
++||+.+.|++|++++.+|++.|++|+++++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 89999999999999999999999999999964
No 94
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.43 E-value=0.00022 Score=56.42 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=34.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL 183 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l 183 (235)
++||+.+.||+|++++.+|++.|++|+++++... +..++++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~-~~~~~el~ 42 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGED-GPTREELL 42 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCC-hhhHHHHH
Confidence 5899999999999999999999999999997433 33344444
No 95
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00055 Score=51.44 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCC---------ChhHHHh--hCCCCceeEEEeCCCCeEe
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN---------FRPKVLQ--MGGKKQFPYMVDPNTGVSM 203 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~---------~r~e~l~--inp~~qVPvLvDpn~G~~L 203 (235)
|.+.+||+...||-|....+.|..++++|+++++.....+ .+++|-+ .|+...+|+|..+|+.+++
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 4456999999999999999999999999999986322111 2455543 4788899999765333444
No 96
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.17 E-value=0.00088 Score=54.51 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~ 172 (235)
+++|+.+.|+.|++++.+|.+.|++|+++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 89999999999999999999999999999863
No 97
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.16 E-value=0.00097 Score=54.35 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=30.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~ 172 (235)
++||+.+.|+.|++++.+|.+.|++|+++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 89999999999999999999999999999864
No 98
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.10 E-value=0.0011 Score=51.97 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=31.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~ 174 (235)
+++|+.+.|+.|++++.+|.+.|++|+++++...
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccC
Confidence 5899999999999999999999999999996443
No 99
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.02 E-value=0.0015 Score=51.95 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=31.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~ 174 (235)
.++||+.+.|..|++++.+|++.|++|+++++...
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 37899999999999999999999999999986443
No 100
>PRK10026 arsenate reductase; Provisional
Probab=97.01 E-value=0.0015 Score=54.21 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEEC
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC 171 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v 171 (235)
|+.++||+.+.|.-||+++.+|.+.|++|+++++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 5679999999999999999999999999999885
No 101
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.95 E-value=0.0053 Score=47.23 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=54.0
Q ss_pred eEEEEcCCCc------chHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCC----CCceeEEEeCCCCeEeeCHHHHH
Q 026628 141 IEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG----KKQFPYMVDPNTGVSMYESDNII 210 (235)
Q Consensus 141 ltLY~~e~cP------~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp----~~qVPvLvDpn~G~~L~ES~aIi 210 (235)
++||....+. .|+.|+..|..++|+|+++++.. ++..++++.+..+ ...||.++. ++..+.+.+++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~-d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM-NEENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC-CHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 5677665443 68899999999999999999753 4567888887754 489999976 688999988877
Q ss_pred HH
Q 026628 211 KY 212 (235)
Q Consensus 211 ~Y 212 (235)
+.
T Consensus 79 ~l 80 (92)
T cd03030 79 EA 80 (92)
T ss_pred HH
Confidence 63
No 102
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0026 Score=51.05 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~ 174 (235)
+.++||+.+.|.-|++++.+|++.||+|++++....
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecC
Confidence 359999999999999999999999999999986433
No 103
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.72 E-value=0.0086 Score=43.71 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=41.2
Q ss_pred CeEEEEcCCCcchHHH----HHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEee
Q 026628 140 PIEIYEYESCPFCRKV----REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkV----R~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ 204 (235)
.+.+|. .+||.|..+ ..++.+.+++++++.+. ..++ ....+...+|+++- +|..++
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-----~~~~-a~~~~v~~vPti~i--~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT-----DMNE-ILEAGVTATPGVAV--DGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-----CHHH-HHHcCCCcCCEEEE--CCEEEE
Confidence 477887 999999988 67888899998887763 1223 34467889999977 554333
No 104
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.65 E-value=0.0081 Score=44.19 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=47.4
Q ss_pred CCcchHHHHHHHHHcCCC---eEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 148 SCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 148 ~cP~CrkVR~aL~elgL~---ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
.+|.|.++...|+..+.+ |+++.. +.+ .++|.+++|+|++. ++.++.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s--~n~-------~~Sptg~LP~L~~~-~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPS--NNP-------WLSPTGELPALIDS-GGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEc--CCC-------CcCCCCCCCEEEEC-CCcEEECHHHHHHhhC
Confidence 478999999999999999 887763 222 25699999999983 6789999999999983
No 105
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.56 E-value=0.021 Score=40.79 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=44.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCe-Eee---CHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV-SMY---ESDNIIK 211 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~-~L~---ES~aIi~ 211 (235)
.++||..++||+|+.+...|.+ .+..+.+..+... + .++..+..+...+|+++. +|. .+. ...+|..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~-~~~~~~~~~v~~vPt~~~--~g~~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--E-NPQKAMEYGIMAVPAIVI--NGDVEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--c-CHHHHHHcCCccCCEEEE--CCEEEEecCCCHHHHHH
Confidence 4789999999999999888764 3433443333211 1 234556678888999976 343 322 2455555
Q ss_pred HHHh
Q 026628 212 YLVG 215 (235)
Q Consensus 212 YL~~ 215 (235)
.|.+
T Consensus 77 ~l~~ 80 (82)
T TIGR00411 77 AIKK 80 (82)
T ss_pred HHHh
Confidence 5543
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.54 E-value=0.0056 Score=49.66 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~ 172 (235)
.++||+.+.|.-|++++.+|.++|++|+++++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 489999999999999999999999999999863
No 107
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.48 E-value=0.0097 Score=37.87 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred eEEEEcCCCcchHHHHHHHH-----HcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEe
Q 026628 141 IEIYEYESCPFCRKVREIVA-----VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~-----elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvD 196 (235)
+.+|...+|++|++++..+. ..++.+..+++.... ...+.....+...+|.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--ALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--HHhhHHHhCCCccccEEEE
Confidence 46788899999999999999 456777777753222 1222245678889999965
No 108
>PRK10853 putative reductase; Provisional
Probab=96.23 E-value=0.0092 Score=47.74 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=31.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~ 174 (235)
++||+.+.|.-|++++.+|++.|++|++++..+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 8999999999999999999999999999986443
No 109
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.12 E-value=0.013 Score=46.20 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=30.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~ 174 (235)
++||+.+.|.-|++++.+|++.|++|+++++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 5899999999999999999999999999986433
No 110
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.03 E-value=0.015 Score=46.00 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNG 175 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g 175 (235)
++||+.+.|.-|++++.+|++.|++|+++++....
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 58999999999999999999999999999864443
No 111
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.99 E-value=0.027 Score=42.60 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=43.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEee
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ 204 (235)
.+.+|..++|++|..++.++.++ ++.++.+++. ..++..+..+-..+|.++- +|..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~-----~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA-----LFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH-----hCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 58899999999999988887765 5777777742 1246777788889999976 565444
No 112
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.91 E-value=0.052 Score=39.48 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=39.2
Q ss_pred CeEEEEcCCCcchHHHHH----HHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeC
Q 026628 140 PIEIYEYESCPFCRKVRE----IVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~----aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~E 205 (235)
.+++ ...+||+|..+.. ++.++|++++.++. ...+++ ...+-..+|.|+. +|...+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-----~~~~~~-~~ygv~~vPalvI--ng~~~~~ 62 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI-----EDFEEI-EKYGVMSVPALVI--NGKVVFV 62 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET-----TTHHHH-HHTT-SSSSEEEE--TTEEEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc-----cCHHHH-HHcCCCCCCEEEE--CCEEEEE
Confidence 4677 4566999996655 56677888877774 124455 7789999999977 5665444
No 113
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.73 E-value=0.078 Score=39.13 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=36.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcC----CCeEEEECCCCCCCChhHHHhhCCCCceeEEEe
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elg----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvD 196 (235)
+++||+-++|+.|..++..|.... +.++.+++. ..+++.+..+. .||||..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~-----~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID-----EDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT-----TTHHHHHHSCT-STSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC-----CCHHHHHHhcC-CCCEEEE
Confidence 489999999999999999999653 345555653 23456777764 8999976
No 114
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.028 Score=44.42 Aligned_cols=71 Identities=17% Similarity=0.368 Sum_probs=57.7
Q ss_pred CeEEEE-----cCCCcchHHHHHHHHHcC-CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 140 PIEIYE-----YESCPFCRKVREIVAVLD-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 140 ~ltLY~-----~e~cP~CrkVR~aL~elg-L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
++.||- ++.|.|+.++--+|..+| ++|..+++. .++..|+.+.+.+.--++|-|.. +|..+..|+.|.+-.
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL-~d~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~Em~ 92 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVL-QDPEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVREMY 92 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeec-cCHHHHhccHhhcCCCCCceeeE--CCEEeccHHHHHHHH
Confidence 477774 688999999999999999 789998874 44667888889999999999976 688888876665543
No 115
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.24 E-value=0.14 Score=38.26 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCcchHHHHHHHHH----c--CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEe
Q 026628 139 KPIEIYEYESCPFCRKVREIVAV----L--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM 203 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~e----l--gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L 203 (235)
.-+.+|..++|+.|+.....+.+ . ++.+..+++. ..+++.+..+-..+|.++ .. +|..+
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d-----~~~~l~~~~~v~~vPt~~i~~-~g~~v 80 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID-----EDQEIAEAAGIMGTPTVQFFK-DKELV 80 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC-----CCHHHHHHCCCeeccEEEEEE-CCeEE
Confidence 34677888999999988777765 2 2334434432 234677777778999983 33 45433
No 116
>PHA02125 thioredoxin-like protein
Probab=94.92 E-value=0.097 Score=37.78 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=38.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEe
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvD 196 (235)
+.+|+.++|+.|+.+...|+.. .+++..+.. + ..+++.+..+-..+|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~--~-~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDT--D-EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeC--C-CCHHHHHHcCCceeCeEEC
Confidence 7899999999999999988754 455555421 1 2357788888889999985
No 117
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.81 E-value=0.12 Score=41.43 Aligned_cols=66 Identities=26% Similarity=0.509 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHH-----cCCCeEEEECCCCCCCChhHHHhhCC--CCceeEEEeCCCC------------eEeeCHHHH
Q 026628 149 CPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGG--KKQFPYMVDPNTG------------VSMYESDNI 209 (235)
Q Consensus 149 cP~CrkVR~aL~e-----lgL~ye~~~v~~~g~~~r~e~l~inp--~~qVPvLvDpn~G------------~~L~ES~aI 209 (235)
||.|..+.=+|.. ..|+++.+.. +.-|.++.+.-+ +...|+||-+++. ..|.+...|
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f----~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDF----PRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCC----CCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 9999999888864 3566665553 233667776543 4579999854222 278999999
Q ss_pred HHHHHhhhC
Q 026628 210 IKYLVGKYG 218 (235)
Q Consensus 210 i~YL~~~yg 218 (235)
++||.++||
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999999
No 118
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=94.08 E-value=0.091 Score=40.84 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=24.4
Q ss_pred EEcCCCcchHHHHHHHHHcCCCeEEEECCCC
Q 026628 144 YEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (235)
Q Consensus 144 Y~~e~cP~CrkVR~aL~elgL~ye~~~v~~~ 174 (235)
|+.+.|.-|++++.+|++.|++|++++..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhC
Confidence 8899999999999999999999999997443
No 119
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.41 E-value=0.099 Score=50.94 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcC-----CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeC----HHHH
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE----SDNI 209 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elg-----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~E----S~aI 209 (235)
-.+++|..+.||||..++.+++++- |..+.++ ...-+++.+......||.++. +|..+++ -.+|
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 190 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID-----GALFQDEVEARNIMAVPTVFL--NGEEFGQGRMTLEEI 190 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE-----chhCHhHHHhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 3589999999999999888876653 3333333 234567888888889999977 4544554 3577
Q ss_pred HHHHHhhhC
Q 026628 210 IKYLVGKYG 218 (235)
Q Consensus 210 i~YL~~~yg 218 (235)
++.|.+..+
T Consensus 191 ~~~~~~~~~ 199 (517)
T PRK15317 191 LAKLDTGAA 199 (517)
T ss_pred HHHHhcccc
Confidence 777776554
No 120
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.16 Score=45.26 Aligned_cols=72 Identities=15% Similarity=0.287 Sum_probs=58.6
Q ss_pred CCeEEEE-----cCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHH
Q 026628 139 KPIEIYE-----YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (235)
Q Consensus 139 ~~ltLY~-----~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL 213 (235)
.++.||- ++.|.|.+.+.-.|.+.|++|..+++. .++.-|+-+++.+.--++|-|.. +|..+..++.|.+-+
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL-~DeelRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVL-TDEELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKEMH 215 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEecc-CCHHHHHHhhhhcCCCCccceeE--CCEeccCcHHHHHHh
Confidence 4577774 678999999999999999999999974 45567888888999999999977 688777766555544
No 121
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.35 E-value=0.48 Score=37.70 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=36.2
Q ss_pred CeEEEEcCCCcchHHHHHHH----HHcCCCeEEEECCCCC--CCC----hhHHHhhCC----CCceeEEEeCCCCe
Q 026628 140 PIEIYEYESCPFCRKVREIV----AVLDLDVLYYPCPRNG--PNF----RPKVLQMGG----KKQFPYMVDPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL----~elgL~ye~~~v~~~g--~~~----r~e~l~inp----~~qVPvLvDpn~G~ 201 (235)
-+..|+.++||+|+.+.-.| ++.++++-.+++.... +.. -.+|.+..+ ...+|.++.=++|.
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 36667889999999864444 4555777666653221 111 124555433 44599995323553
No 122
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.70 E-value=0.23 Score=42.89 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=45.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcC-----CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEee---CHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY---ESDNIIK 211 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elg-----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~---ES~aIi~ 211 (235)
.+.+|..++||+|..+..++++.. +.+..++. ...+++.+..+-..+|.++-.++|..+. .-.++.+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~-----~~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~ 210 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEA-----NENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLE 210 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeC-----CCCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHH
Confidence 577789999999999888887642 33333332 1235677778888999995433454222 2356666
Q ss_pred HHHh
Q 026628 212 YLVG 215 (235)
Q Consensus 212 YL~~ 215 (235)
+|.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 6654
No 123
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.70 E-value=0.66 Score=32.31 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=37.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHH-----cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e-----lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+.+|+.++|+.|+.+...+.+ .++.+...++.. ..++.+..+...+|+++
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE-----NPELAEEYGVRSIPTFL 68 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC-----ChhHHHhcCcccccEEE
Confidence 4677888999999999888877 566666666522 23566667778899984
No 124
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.17 E-value=0.1 Score=50.81 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcC-----CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeC----HHHH
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE----SDNI 209 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elg-----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~E----S~aI 209 (235)
-.+++|..+.||||..+..+++++. |..+.++ ...-+++.+......||.++. +|..+++ -.++
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 191 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-----GALFQDEVEALGIQGVPAVFL--NGEEFHNGRMDLAEL 191 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-----chhCHHHHHhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 3589999999999999988887653 3333332 233467778888889999976 4444554 3556
Q ss_pred HHHHHhhhC
Q 026628 210 IKYLVGKYG 218 (235)
Q Consensus 210 i~YL~~~yg 218 (235)
++.|.+.++
T Consensus 192 ~~~l~~~~~ 200 (515)
T TIGR03140 192 LEKLEETAG 200 (515)
T ss_pred HHHHhhccC
Confidence 666665544
No 125
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.96 E-value=0.72 Score=45.54 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=47.2
Q ss_pred CeEEEEcCCCcchHHHHHHHH----Hc-CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeC----HHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVA----VL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE----SDNII 210 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~----el-gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~E----S~aIi 210 (235)
.+++|..++||+|..+..+++ ++ +|..+.+++. .-+++.+..+-..||.++. +|..+++ -.+|+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~-----~~~~~~~~~~v~~vP~~~i--~~~~~~~G~~~~~~~~ 551 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS-----HFPDLKDEYGIMSVPAIVV--DDQQVYFGKKTIEEML 551 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc-----ccHHHHHhCCceecCEEEE--CCEEEEeeCCCHHHHH
Confidence 488999999999998766554 45 6888877742 2357787888999999987 4544443 34555
Q ss_pred HHH
Q 026628 211 KYL 213 (235)
Q Consensus 211 ~YL 213 (235)
.+|
T Consensus 552 ~~~ 554 (555)
T TIGR03143 552 ELI 554 (555)
T ss_pred Hhh
Confidence 544
No 126
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.57 E-value=0.19 Score=39.26 Aligned_cols=51 Identities=16% Similarity=0.412 Sum_probs=35.5
Q ss_pred CeEEE-EcCCCcchHHHHHHHHHcC-----CCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIY-EYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY-~~e~cP~CrkVR~aL~elg-----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
.+.+| +.+||++|+.++..|++.. +.+..+++. ..+++.+..+-..+|.++
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-----cCHHHHHHcCCCcCCEEE
Confidence 35565 5689999999988887654 334444432 235788888899999994
No 127
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=90.77 E-value=2.7 Score=30.50 Aligned_cols=74 Identities=14% Similarity=0.282 Sum_probs=46.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEe------eCHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESDNI 209 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L------~ES~aI 209 (235)
-+..|+.++|+.|+..+-.+.+ .+-++.+..+... ...++.+...-..+|.++-=.+|..+ .+...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD---ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh---ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 4667778999999988765543 2324444332111 22567788888999999421144322 256788
Q ss_pred HHHHHhh
Q 026628 210 IKYLVGK 216 (235)
Q Consensus 210 i~YL~~~ 216 (235)
.++|.++
T Consensus 97 ~~~i~~~ 103 (103)
T PF00085_consen 97 IEFIEKH 103 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8888764
No 128
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.86 Score=41.96 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEE-----EE-CCCCCCCC-------------------------hhHHHhh--
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLY-----YP-CPRNGPNF-------------------------RPKVLQM-- 185 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~-----~~-v~~~g~~~-------------------------r~e~l~i-- 185 (235)
..+-||..-.|||..+..+.++.+|++-.+ +. ...+|..+ -.|+-.+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 569999999999999999999999986332 11 11111111 0112111
Q ss_pred ---CCCCceeEEEeCCCC-eEeeCHHHHHHHHH---hhhCC-------CCCCccccc
Q 026628 186 ---GGKKQFPYMVDPNTG-VSMYESDNIIKYLV---GKYGD-------GSVPFMLSL 228 (235)
Q Consensus 186 ---np~~qVPvLvDpn~G-~~L~ES~aIi~YL~---~~yg~-------~~~P~~l~~ 228 (235)
.++-+||||=|-... ++-.||.+||+.+. +.|-. +++|..|+.
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~ 172 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRA 172 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHH
Confidence 345689999774333 57789999999999 33321 367776654
No 129
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.54 E-value=1.3 Score=34.67 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCc------chHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhC---------CCCceeEEEeCCCCeEe
Q 026628 139 KPIEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG---------GKKQFPYMVDPNTGVSM 203 (235)
Q Consensus 139 ~~ltLY~~e~cP------~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~in---------p~~qVPvLvDpn~G~~L 203 (235)
|.|++|....+. .|+++...|..++|+|+.+++.. ++..++++.+.. +....|.|+. ++..+
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~-~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM-DEEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYC 77 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC-CHHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEE
Confidence 457888876554 56789999999999999999754 555677777665 2334578876 67777
Q ss_pred eCHHHHHH
Q 026628 204 YESDNIIK 211 (235)
Q Consensus 204 ~ES~aIi~ 211 (235)
.+=.++.+
T Consensus 78 Gdye~f~e 85 (99)
T PF04908_consen 78 GDYEDFEE 85 (99)
T ss_dssp EEHHHHHH
T ss_pred eeHHHHHH
Confidence 66555544
No 130
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=89.66 E-value=5.7 Score=32.20 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=50.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----C--CCeEEEECCCCCCCChhHHHhhCCCCceeEE--EeCCCCeEee------C
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTGVSMY------E 205 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----g--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvL--vDpn~G~~L~------E 205 (235)
-+..|+..||+.|+...-.+.++ + +.+..+++. .. ...++.+..+-..+|.+ +++ +|..+. .
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd--~~-~~~~~~~~~~V~~iPt~v~~~~-~G~~v~~~~G~~~ 98 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVD--NP-KWLPEIDRYRVDGIPHFVFLDR-EGNEEGQSIGLQP 98 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcC--Cc-ccHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCC
Confidence 35556778999999776665533 2 334333432 11 12456677777889988 343 454332 2
Q ss_pred HHHHHHHHHhhhCCCCCCcccccCcc
Q 026628 206 SDNIIKYLVGKYGDGSVPFMLSLGLL 231 (235)
Q Consensus 206 S~aIi~YL~~~yg~~~~P~~l~~~~~ 231 (235)
-..|...|.+.......|.....|..
T Consensus 99 ~~~l~~~l~~l~~~~~~~~~~~~~~~ 124 (142)
T cd02950 99 KQVLAQNLDALVAGEPLPYANAVGQT 124 (142)
T ss_pred HHHHHHHHHHHHcCCCCCcccccCcc
Confidence 45566667666655555655444443
No 131
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.56 E-value=1.6 Score=40.47 Aligned_cols=90 Identities=21% Similarity=0.354 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEE----EE--CCCCCCCChhH------------------HHh----hCCCCc
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLY----YP--CPRNGPNFRPK------------------VLQ----MGGKKQ 190 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~----~~--v~~~g~~~r~e------------------~l~----inp~~q 190 (235)
..+.||-.-+||+..+..++=+.+|+.=.+ +. ...+|..+.++ +.. .++..+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 468999999999999988877777775322 11 11222221111 111 256779
Q ss_pred eeEEEeCCCC-eEeeCHHHHHHHHHhhhCC------CCCCccccc
Q 026628 191 FPYMVDPNTG-VSMYESDNIIKYLVGKYGD------GSVPFMLSL 228 (235)
Q Consensus 191 VPvLvDpn~G-~~L~ES~aIi~YL~~~yg~------~~~P~~l~~ 228 (235)
||+|-|.... ++-.||.+||+-|+..|.. +++|..|+.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~ 174 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRT 174 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHH
Confidence 9999986444 4778999999999887742 478877665
No 132
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=88.90 E-value=3.3 Score=36.59 Aligned_cols=34 Identities=26% Similarity=0.614 Sum_probs=23.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc---CCCeEEEECCC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL---DLDVLYYPCPR 173 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el---gL~ye~~~v~~ 173 (235)
.+.+|..+.||||++...-|.+. |+.+.+...+.
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 47778889999999998877764 34444443443
No 133
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=87.21 E-value=2.7 Score=32.57 Aligned_cols=63 Identities=16% Similarity=0.321 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCcchHHHHHHHH-------H--cCCCeEEEECCCCCC--------CChhHHHhhCCCCceeEE--EeCCC
Q 026628 139 KPIEIYEYESCPFCRKVREIVA-------V--LDLDVLYYPCPRNGP--------NFRPKVLQMGGKKQFPYM--VDPNT 199 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~-------e--lgL~ye~~~v~~~g~--------~~r~e~l~inp~~qVPvL--vDpn~ 199 (235)
.-+..|+.++|++|++....+. . .++.+...++..... ....++....+...+|.+ +++++
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~g 95 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPEG 95 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCCC
Confidence 3466778899999998764331 1 123332233321100 013466666777889997 45432
Q ss_pred Ce
Q 026628 200 GV 201 (235)
Q Consensus 200 G~ 201 (235)
|.
T Consensus 96 g~ 97 (125)
T cd02951 96 GK 97 (125)
T ss_pred Cc
Confidence 44
No 134
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=86.56 E-value=1.4 Score=31.84 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=41.9
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----C--CCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeE---e---eCH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVS---M---YES 206 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----g--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~---L---~ES 206 (235)
-+..|+.++|+.|+.+...+.+. + +.+-.+++. ..+++.+..+-..+|.++ -+ +|.. . ...
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~v~~~P~~~~~~-~g~~~~~~~g~~~~ 90 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD-----ENPDIAAKYGIRSIPTLLLFK-NGKEVDRSVGALPK 90 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC-----CCHHHHHHcCCCcCCEEEEEe-CCcEeeeecCCCCH
Confidence 35556678999999887666543 2 333333332 234566677778899983 33 3432 1 124
Q ss_pred HHHHHHHHhh
Q 026628 207 DNIIKYLVGK 216 (235)
Q Consensus 207 ~aIi~YL~~~ 216 (235)
.+|..+|.+.
T Consensus 91 ~~l~~~l~~~ 100 (101)
T TIGR01068 91 AALKQLINKN 100 (101)
T ss_pred HHHHHHHHhh
Confidence 7777777653
No 135
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=85.57 E-value=1.7 Score=31.57 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcC--------CCeEEEECCCCCCCChhHHHhhCCCCceeEE-EeCCCC-eEee----
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLD--------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM-VDPNTG-VSMY---- 204 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elg--------L~ye~~~v~~~g~~~r~e~l~inp~~qVPvL-vDpn~G-~~L~---- 204 (235)
..+.+|+.++|+.|+.....+.... +.+...++. ...++.+..+...+|.+ +-.+++ ..-+
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~ 89 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-----AEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGR 89 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-----chHHHHHhCCCCcCCEEEEecCCCcceeecCCC
Confidence 3578888999999998655554321 223223331 23566677778889988 333234 2222
Q ss_pred CHHHHHHHHHh
Q 026628 205 ESDNIIKYLVG 215 (235)
Q Consensus 205 ES~aIi~YL~~ 215 (235)
....+..+|.+
T Consensus 90 ~~~~l~~~i~~ 100 (102)
T TIGR01126 90 DLEAIVEFVNE 100 (102)
T ss_pred CHHHHHHHHHh
Confidence 23456666654
No 136
>PTZ00051 thioredoxin; Provisional
Probab=85.49 E-value=1.1 Score=32.97 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=36.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCe
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~ 201 (235)
-+..|+.++|+.|+.....+..+ ++.+...++. ...++.+..+-..+|+++ .. +|.
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~-----~~~~~~~~~~v~~~Pt~~~~~-~g~ 82 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD-----ELSEVAEKENITSMPTFKVFK-NGS 82 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc-----chHHHHHHCCCceeeEEEEEe-CCe
Confidence 35667789999999887766553 3434333431 234577777888999984 43 454
No 137
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=84.39 E-value=2.5 Score=31.64 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=33.1
Q ss_pred CeEEEEcCCCcchHHHHHHH------H-H-c-CCCeEEEECCCCCCCChhHHHhhCCCCceeEE
Q 026628 140 PIEIYEYESCPFCRKVREIV------A-V-L-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM 194 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL------~-e-l-gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvL 194 (235)
-+..|+.++|++|+.....+ . + . ++.+...++... .....++.+..+...+|++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~~~i~~~Pti 76 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKN-DPEITALLKRFGVFGPPTY 76 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCC-CHHHHHHHHHcCCCCCCEE
Confidence 46677889999999876332 1 1 1 333333343221 2224577777888899988
No 138
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=84.30 E-value=1.4 Score=32.15 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=36.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCe
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~ 201 (235)
-+..|+.++|+.|++....|.++ ...+....+.. ...+++.+..+-..+|+++ .. +|.
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~---~~~~~~~~~~~i~~~Pt~~~~~-~g~ 79 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA---EELPEISEKFEITAVPTFVFFR-NGT 79 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc---ccCHHHHHhcCCccccEEEEEE-CCE
Confidence 35667789999999988777653 23344444321 1234566666778899883 33 554
No 139
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=83.59 E-value=5.8 Score=29.86 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=32.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc------------CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL------------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el------------gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.++|+.|+...-.+.++ ++.+-.++|.. .+++.+..+-..+|.++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-----~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-----ESDIADRYRINKYPTLK 83 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-----CHHHHHhCCCCcCCEEE
Confidence 35667789999999776555422 12333344422 24677778888999994
No 140
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=82.79 E-value=3.4 Score=32.44 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=33.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHH------cCCCeEEEECCCCCCCChhHHHhhCCCC-ceeEEE--eCCCCeEee
Q 026628 140 PIEIYEYESCPFCRKVREIVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMV--DPNTGVSMY 204 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e------lgL~ye~~~v~~~g~~~r~e~l~inp~~-qVPvLv--Dpn~G~~L~ 204 (235)
-+..|+..||++|++..-.+.+ .+..|...++...... .. ...+..+ .+|.++ ++ +|..+-
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~--~~~~~~g~~vPt~~f~~~-~Gk~~~ 91 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP-KD--EEFSPDGGYIPRILFLDP-SGDVHP 91 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc-hh--hhcccCCCccceEEEECC-CCCCch
Confidence 3555778999999988665554 2345555554322211 11 1223332 499983 44 455433
No 141
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=82.60 E-value=0.76 Score=37.41 Aligned_cols=29 Identities=24% Similarity=0.662 Sum_probs=15.0
Q ss_pred eeEEEeCCCCeEeeCHHHHHHHHHhhhCC
Q 026628 191 FPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (235)
Q Consensus 191 VPvLvDpn~G~~L~ES~aIi~YL~~~yg~ 219 (235)
-|-|.+..+|..++|..||++||..-|-+
T Consensus 36 ~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 36 GPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cceeeecCCceEEecccHHHHHHHhhcCC
Confidence 37787766899999999999999988854
No 142
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.11 E-value=3.1 Score=37.21 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=49.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~y 217 (235)
+-|+++. .|..|..+|...++||.++-++ +. || ++|.|+||.|.. +...+.|=..|+.+.+.+-
T Consensus 29 iLl~d~a---scLAVqtfLrMcnLPf~v~~~~-Na-----ef--mSP~G~vPllr~--g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 29 ILLPDNA---SCLAVQTFLRMCNLPFNVRQRA-NA-----EF--MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred cccccch---hHHHHHHHHHHcCCCceeeecC-Cc-----cc--cCCCCCCceeee--cchhhhhhhHHHHHHHHhc
Confidence 4444443 5899999999999999998752 22 23 468889999977 5678999999999998873
No 143
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=81.29 E-value=3 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.679 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCcchHHHHHHHHH--cCCCeEEEECC
Q 026628 139 KPIEIYEYESCPFCRKVREIVAV--LDLDVLYYPCP 172 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~e--lgL~ye~~~v~ 172 (235)
..+.+|..+.||||++....+.+ .++.+.++.++
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p 114 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVP 114 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcC
Confidence 35777788999999999988874 35555555554
No 144
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=80.65 E-value=7.9 Score=29.41 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHc-----CCCeEE--EECCCCCCCChhHHH-hhCCCCceeEEE
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLY--YPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~--~~v~~~g~~~r~e~l-~inp~~qVPvLv 195 (235)
.-+..|+.++||.|+...-.+.++ +..+.+ +++... .. .+. +..+...+|.++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~-~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QR-EFAKEELQLKSFPTIL 83 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---ch-hhHHhhcCCCcCCEEE
Confidence 457778889999999765544332 223333 343221 12 233 346777899883
No 145
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=79.85 E-value=6.7 Score=31.48 Aligned_cols=65 Identities=18% Similarity=0.442 Sum_probs=37.1
Q ss_pred eEEEEcCCCcchHHHHH-------HHHHcCCCeEEEECCCC-CCCChhHHHh----hCCCCceeEEE--eCCCCeEeeCH
Q 026628 141 IEIYEYESCPFCRKVRE-------IVAVLDLDVLYYPCPRN-GPNFRPKVLQ----MGGKKQFPYMV--DPNTGVSMYES 206 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~-------aL~elgL~ye~~~v~~~-g~~~r~e~l~----inp~~qVPvLv--Dpn~G~~L~ES 206 (235)
+..++..+|++|++... ....++-.|..+.+... .+.....+.+ .++...+|+++ ++ +|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~-~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP-DLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC-CCCEEeee
Confidence 44467799999997732 33333445666554322 1222222222 45677899983 55 68888765
No 146
>PRK09381 trxA thioredoxin; Provisional
Probab=78.94 E-value=20 Score=26.79 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=39.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----cCCCeEE--EECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEee------CH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLY--YPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMY------ES 206 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----lgL~ye~--~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L~------ES 206 (235)
-+..|+.++||.|+...-.+.+ .+-.+.+ .++.. .+.+.+..+-..+|.++ .. +|..+. +.
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~-----~~~~~~~~~v~~~Pt~~~~~-~G~~~~~~~G~~~~ 97 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ-----NPGTAPKYGIRGIPTLLLFK-NGEVAATKVGALSK 97 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC-----ChhHHHhCCCCcCCEEEEEe-CCeEEEEecCCCCH
Confidence 3556677899999977655543 2222333 33321 23455556778899983 33 555332 23
Q ss_pred HHHHHHHHh
Q 026628 207 DNIIKYLVG 215 (235)
Q Consensus 207 ~aIi~YL~~ 215 (235)
..|..+|++
T Consensus 98 ~~l~~~i~~ 106 (109)
T PRK09381 98 GQLKEFLDA 106 (109)
T ss_pred HHHHHHHHH
Confidence 456666654
No 147
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=78.73 E-value=4.7 Score=36.05 Aligned_cols=32 Identities=9% Similarity=0.366 Sum_probs=22.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHH---c-CCCeEEEEC
Q 026628 140 PIEIYEYESCPFCRKVREIVAV---L-DLDVLYYPC 171 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e---l-gL~ye~~~v 171 (235)
.+.+|....||||++....+.+ . ++.+.++++
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3667777999999999777653 2 366666654
No 148
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=78.65 E-value=5.3 Score=30.56 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=40.4
Q ss_pred EEEcCCCcchHHHHHHHHHcCC--CeEEEECCCCCCCChhHHH---hhCC--CCceeEEEeCCCCe-EeeCHHHHHHHHH
Q 026628 143 IYEYESCPFCRKVREIVAVLDL--DVLYYPCPRNGPNFRPKVL---QMGG--KKQFPYMVDPNTGV-SMYESDNIIKYLV 214 (235)
Q Consensus 143 LY~~e~cP~CrkVR~aL~elgL--~ye~~~v~~~g~~~r~e~l---~inp--~~qVPvLvDpn~G~-~L~ES~aIi~YL~ 214 (235)
||+...||+|......+...+. .+++.+. ..+. ..++. .+.+ ..+.-.+++ +|. +..+++|+++-+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDI--QSEP-DQALLASYGISPEDADSRLHLID--DGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEEC--CChh-hhhHHHhcCcCHHHHcCeeEEec--CCCEEEEcHHHHHHHHH
Confidence 4667789999999999998875 4555554 1111 11111 1111 112233333 454 8999999988765
Q ss_pred hh
Q 026628 215 GK 216 (235)
Q Consensus 215 ~~ 216 (235)
..
T Consensus 76 ~~ 77 (114)
T PF04134_consen 76 RL 77 (114)
T ss_pred Hc
Confidence 53
No 149
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=78.32 E-value=2.6 Score=32.80 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=38.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEee
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ 204 (235)
-+..|+.++|+.|+.+.-.|.++ ++.+-.+++. ..+++.+...-..+|+++-=.+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~-----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE-----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc-----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 45667779999999887777653 3433333321 234677778888999994222565443
No 150
>PRK10996 thioredoxin 2; Provisional
Probab=78.25 E-value=5.4 Score=32.11 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=44.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEe------eCHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM------YESDN 208 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L------~ES~a 208 (235)
-+..|+-+||+.|+...-.+.+ .+-.+.+..+.. ...+++.+..+-..+|.++ .. +|..+ .....
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~---~~~~~l~~~~~V~~~Ptlii~~-~G~~v~~~~G~~~~e~ 130 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNT---EAERELSARFRIRSIPTIMIFK-NGQVVDMLNGAVPKAP 130 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeC---CCCHHHHHhcCCCccCEEEEEE-CCEEEEEEcCCCCHHH
Confidence 4666777999999976555543 232344433321 1235677777888999994 33 55433 22466
Q ss_pred HHHHHHhh
Q 026628 209 IIKYLVGK 216 (235)
Q Consensus 209 Ii~YL~~~ 216 (235)
|..+|.+.
T Consensus 131 l~~~l~~~ 138 (139)
T PRK10996 131 FDSWLNEA 138 (139)
T ss_pred HHHHHHHh
Confidence 77777764
No 151
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=78.21 E-value=6.8 Score=28.88 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=39.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEE--EECCCCCCCChhHHHhhCCCCceeEEE-eCCCCe-Eee----CH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLY--YPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV-SMY----ES 206 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~--~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~-~L~----ES 206 (235)
.+..|+.++|+.|+...-.+.++ +..+.+ .++. ..+++.+...-..+|.++ .. +|. .-+ ..
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~-----~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~G~~~~ 92 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT-----QEPGLSGRFFVTALPTIYHAK-DGVFRRYQGPRDK 92 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc-----CCHhHHHHcCCcccCEEEEeC-CCCEEEecCCCCH
Confidence 47778889999999766554432 223333 3332 123466666778899994 33 443 122 23
Q ss_pred HHHHHHHH
Q 026628 207 DNIIKYLV 214 (235)
Q Consensus 207 ~aIi~YL~ 214 (235)
.+|..+|.
T Consensus 93 ~~l~~~i~ 100 (101)
T cd02994 93 EDLISFIE 100 (101)
T ss_pred HHHHHHHh
Confidence 55555554
No 152
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=77.15 E-value=12 Score=30.20 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=12.8
Q ss_pred eEEEEcCCCcchHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIV 159 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL 159 (235)
+..|...+||+|+.....+
T Consensus 65 ~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEECCcCHHHHHHHHHH
Confidence 4455678999999754333
No 153
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=76.71 E-value=2.8 Score=29.82 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHc------CCCeEEEECCCCCCCChhHHHhhCCCCceeEE
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM 194 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~el------gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvL 194 (235)
.-+.+|..++|++|+.....+.+. +-.+.+..+... ...++.+..+-..+|.+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT---ANNDLCSEYGVRGYPTI 75 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc---chHHHHHhCCCCCCCEE
Confidence 457778889999999877666542 223333332111 23567777777899988
No 154
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=76.39 E-value=16 Score=30.39 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=50.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCc---eeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQ---FPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~q---VPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
.++++..-.|++|-....+|...+..-.++.....++. ...+++..|... .=++.++ +|..+.+|+|+++-+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~~~l~~~~l~~~~~~s~~~~~-~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQALLEAAGLDPEDVDSVLLVE-AGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch-hhhHHhhcCCChhhhheeeEec-CCceEeccHHHHHHHHHC
Confidence 46777788899999988889888877666553334332 334555555432 1222333 788999999999988664
No 155
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=75.83 E-value=11 Score=32.32 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=47.1
Q ss_pred CeEEEEc---CCCcchHHHHHHHHHcC-----CCeEEEECCCCCCCChhHHHhhCCCCceeEEEe-CCCCeEe----eC-
Q 026628 140 PIEIYEY---ESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD-PNTGVSM----YE- 205 (235)
Q Consensus 140 ~ltLY~~---e~cP~CrkVR~aL~elg-----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvD-pn~G~~L----~E- 205 (235)
.+.+|.. +||+.|+.+.-.+++.. +.+..+.+. .+ ..+++.+..+-..+|.++- . +|..+ .+
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd--~~-~~~~l~~~~~V~~~Pt~~~f~-~g~~~~~~~~G~ 97 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFD--TP-EDKEEAEKYGVERVPTTIILE-EGKDGGIRYTGI 97 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecC--Cc-ccHHHHHHcCCCccCEEEEEe-CCeeeEEEEeec
Confidence 4777877 89999998888776652 333344432 11 2457888888999999943 3 33221 12
Q ss_pred --HHHHHHHHHhhhC
Q 026628 206 --SDNIIKYLVGKYG 218 (235)
Q Consensus 206 --S~aIi~YL~~~yg 218 (235)
-..+..+|...++
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 3456677776654
No 156
>PF13728 TraF: F plasmid transfer operon protein
Probab=75.49 E-value=17 Score=31.86 Aligned_cols=61 Identities=23% Similarity=0.440 Sum_probs=39.1
Q ss_pred CeEEEEcCCCcchHH----HHHHHHHcCCCeEEEECCCCC----CC--ChhHHHhhCCCCceeEE--EeCCCC
Q 026628 140 PIEIYEYESCPFCRK----VREIVAVLDLDVLYYPCPRNG----PN--FRPKVLQMGGKKQFPYM--VDPNTG 200 (235)
Q Consensus 140 ~ltLY~~e~cP~Crk----VR~aL~elgL~ye~~~v~~~g----~~--~r~e~l~inp~~qVPvL--vDpn~G 200 (235)
.+.+|.-..||+|.. ++.+..+.|+.+..+.++-.+ ++ ......+..+-..+|.| ++++++
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 466777789999984 566667778888877653111 11 12345555556799998 566554
No 157
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=75.08 E-value=5.3 Score=29.91 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=38.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----c---CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCe-Eee----CHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----L---DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV-SMY----ESD 207 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----l---gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~-~L~----ES~ 207 (235)
-+..|..++||.|++..-.+.+ . +..+....+... ..+++.+...-..+|.++-=++|. ..+ ...
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~ 94 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---AYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTKD 94 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---cCHhHHhhcCCccccEEEEEcCCCceeecCCCCHH
Confidence 4566777999999966544422 2 323333222111 124566667778899993212332 112 245
Q ss_pred HHHHHHHh
Q 026628 208 NIIKYLVG 215 (235)
Q Consensus 208 aIi~YL~~ 215 (235)
+|.+++.+
T Consensus 95 ~l~~~~~~ 102 (104)
T cd03000 95 DIVEFANR 102 (104)
T ss_pred HHHHHHHh
Confidence 66666654
No 158
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=74.93 E-value=2.9 Score=31.35 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=32.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CC--CeEEEECCCCCCC-----------------ChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DL--DVLYYPCPRNGPN-----------------FRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL--~ye~~~v~~~g~~-----------------~r~e~l~inp~~qVPvLv 195 (235)
.+.+|..++||+|++....+... .+ .+..+.+...+.. ...++.+..+-...|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 46677789999999987766531 11 2344332111110 123566667777899995
Q ss_pred eC-CCCe
Q 026628 196 DP-NTGV 201 (235)
Q Consensus 196 Dp-n~G~ 201 (235)
-- ++|.
T Consensus 88 ~~d~~G~ 94 (112)
T PF13098_consen 88 FLDKDGK 94 (112)
T ss_dssp ECTTTSC
T ss_pred EEcCCCC
Confidence 32 2455
No 159
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=74.57 E-value=16 Score=27.55 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=35.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVS 202 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~ 202 (235)
-+..|..+||+.|+...-.+.++ ++.+-.+++.. .....++.+...-..+|.++ .. +|..
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~--~~~~~~l~~~~~V~~~Pt~~~~~-~G~~ 83 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDE--NDSTMELCRREKIIEVPHFLFYK-DGEK 83 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCC--ChHHHHHHHHcCCCcCCEEEEEe-CCeE
Confidence 35556779999999776666543 33333333321 11224677777888899884 33 5543
No 160
>PHA02278 thioredoxin-like protein
Probab=74.49 E-value=18 Score=27.89 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=36.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHc----C--CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEe
Q 026628 141 IEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el----g--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L 203 (235)
+.-|+.+||+.|+...-.+.++ + +.+..+++... ....+++.+...-..+|+++-=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~-~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAE-DVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcc-ccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4556679999999776555443 2 23444444321 1124567778888899999432255533
No 161
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=74.31 E-value=7.7 Score=32.92 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred eEEE-EcCCCcchH-------HHHHHHHHcCCCeEEEEC
Q 026628 141 IEIY-EYESCPFCR-------KVREIVAVLDLDVLYYPC 171 (235)
Q Consensus 141 ltLY-~~e~cP~Cr-------kVR~aL~elgL~ye~~~v 171 (235)
+.|| +..+||.|| ++...+...+-+++++-+
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfV 74 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFV 74 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEE
Confidence 4554 458999999 556667777778888765
No 162
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=74.22 E-value=4.3 Score=28.62 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=24.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHc------CCCeEEEECCC
Q 026628 141 IEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPR 173 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el------gL~ye~~~v~~ 173 (235)
+.+|....||+|+.....+.+. ++.++.+++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 4678889999999888777664 45666666543
No 163
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=73.59 E-value=4 Score=31.37 Aligned_cols=70 Identities=10% Similarity=0.208 Sum_probs=39.7
Q ss_pred CeEEEEcCCCcchHHHHHHH----HHc---CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEe------eC
Q 026628 140 PIEIYEYESCPFCRKVREIV----AVL---DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM------YE 205 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL----~el---gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L------~E 205 (235)
-+..|+.+||+.|+...-.+ ++. ++.+-.+++.. .+++.+..+-..+|.++ -. +|... ..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-----~~~l~~~~~V~~~Pt~~i~~-~g~~~~~~~G~~~ 100 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-----ERRLARKLGAHSVPAIVGII-NGQVTFYHDSSFT 100 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-----cHHHHHHcCCccCCEEEEEE-CCEEEEEecCCCC
Confidence 46667889999998654333 222 34444444421 23566667888999984 32 44322 12
Q ss_pred HHHHHHHHHh
Q 026628 206 SDNIIKYLVG 215 (235)
Q Consensus 206 S~aIi~YL~~ 215 (235)
...|.++|.+
T Consensus 101 ~~~l~~~i~~ 110 (111)
T cd02963 101 KQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHhc
Confidence 4556666543
No 164
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=73.14 E-value=19 Score=26.21 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=33.5
Q ss_pred CeEEEEcCCCcchHHHHHHH----HHcC----CCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCe
Q 026628 140 PIEIYEYESCPFCRKVREIV----AVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL----~elg----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~ 201 (235)
-+.+|.-++|+.|+.....+ ++.. +.+-..++.. + ...++.+..+-..+|.++ .+ +|.
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~-~~~~~~~~~~i~~~Pt~~~~~-~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--P-EHDALKEEYNVKGFPTFKYFE-NGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--C-ccHHHHHhCCCccccEEEEEe-CCC
Confidence 46777889999999775333 2222 2232234321 1 234566666777899884 44 444
No 165
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=72.59 E-value=22 Score=32.21 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=34.5
Q ss_pred eEEEEcCCCcchHHHHHHH----HHcCCCeEEEECCCCCC------CChhHHHhhCCCCceeEE--EeCCCCe
Q 026628 141 IEIYEYESCPFCRKVREIV----AVLDLDVLYYPCPRNGP------NFRPKVLQMGGKKQFPYM--VDPNTGV 201 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL----~elgL~ye~~~v~~~g~------~~r~e~l~inp~~qVPvL--vDpn~G~ 201 (235)
+..|.-.+||+|+...-.| .+.|+.+..+.++.... .......+..+-..+|.+ +++|+|.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 4455668999999665444 34465555454422110 011234555677889999 5654453
No 166
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=72.21 E-value=8.2 Score=29.99 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=23.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCP 172 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~ 172 (235)
.++.|....||+|++....+... ++.+.+++++
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 56777788999999887666542 3556666654
No 167
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=71.85 E-value=7.2 Score=29.31 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=33.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----C-CCeEEEECCCCCCCChhHHHhhCCCCceeEE-EeCCCCe
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM-VDPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----g-L~ye~~~v~~~g~~~r~e~l~inp~~qVPvL-vDpn~G~ 201 (235)
-+..|+.+||+.|+...-.+... + -.+.+..+... .++..+...-..+|.+ +.. +|.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d----~~~~~~~~~v~~~Pt~~~~~-~g~ 82 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD----TIDTLKRYRGKCEPTFLFYK-NGE 82 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC----CHHHHHHcCCCcCcEEEEEE-CCE
Confidence 35567779999999876666432 2 11222222111 2356677778889988 343 454
No 168
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=71.37 E-value=9.1 Score=33.91 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=46.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEe------eCHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM------YESDN 208 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L------~ES~a 208 (235)
-+..|+-+||+.|+...-.+.+. +-.+.+..+... ..+++.+..+-..+|.++ -+ +|..+ ....+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~---~~~~l~~~~~I~~~PTl~~f~-~G~~v~~~~G~~s~e~ 130 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT---RALNLAKRFAIKGYPTLLLFD-KGKMYQYEGGDRSTEK 130 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc---ccHHHHHHcCCCcCCEEEEEE-CCEEEEeeCCCCCHHH
Confidence 36667789999999775554432 212333222111 234677777888999883 22 45422 24688
Q ss_pred HHHHHHhhhCC
Q 026628 209 IIKYLVGKYGD 219 (235)
Q Consensus 209 Ii~YL~~~yg~ 219 (235)
|.+|+.+.|..
T Consensus 131 L~~fi~~~~~~ 141 (224)
T PTZ00443 131 LAAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 169
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.34 E-value=19 Score=33.84 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 148 ~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
.|+-|..|.+.++..+-+.++... .+. -.++.+++|+|++. +|..+..-..|+.||.+.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~s-sN~--------~~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVS-SNP--------WRSPSGKLPYLITD-NGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEee-cCC--------CCCCCCCCCeEEec-CCceeccHHHHHHHHHHh
Confidence 589999999999998855544432 111 12478899999875 678999999999999983
No 170
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=70.38 E-value=3.4 Score=31.32 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=32.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.+||+.|+...-.+.++ ++.+--+++ ....+++.+..+-..+|+++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~----~~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEE----SSIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEEC----CCCCHHHHHhcCCeecCEEE
Confidence 46667789999999776555433 333322222 11234666777778899883
No 171
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=70.37 E-value=31 Score=28.50 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=13.7
Q ss_pred EEEcCCCcchHHHHHHHHH
Q 026628 143 IYEYESCPFCRKVREIVAV 161 (235)
Q Consensus 143 LY~~e~cP~CrkVR~aL~e 161 (235)
.|.-.+||.|++..-.|.+
T Consensus 31 ~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 31 FFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEECCCChhHHHHHHHHHH
Confidence 3445899999987766654
No 172
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.08 E-value=8 Score=35.69 Aligned_cols=71 Identities=15% Similarity=0.307 Sum_probs=52.8
Q ss_pred CCeEEEEcCCC------cchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCC----CceeEEEeCCCCeEeeCHHH
Q 026628 139 KPIEIYEYESC------PFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESDN 208 (235)
Q Consensus 139 ~~ltLY~~e~c------P~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~----~qVPvLvDpn~G~~L~ES~a 208 (235)
..+.+|....- -.|..||.+|+-.++.|+++++.+. ..+++|+..+-+. ..+|.+.. +|..|.....
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd-~~fr~EL~~~lg~~~~~~~LPrVFV--~GryIGgaee 207 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMD-SEFREELQELLGEDEKAVSLPRVFV--KGRYIGGAEE 207 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccccc-HHHHHHHHHHHhcccccCccCeEEE--ccEEeccHHH
Confidence 36888864321 1588999999999999999998554 3467888776544 47888866 6888888877
Q ss_pred HHHH
Q 026628 209 IIKY 212 (235)
Q Consensus 209 Ii~Y 212 (235)
|++-
T Consensus 208 V~~L 211 (281)
T KOG2824|consen 208 VVRL 211 (281)
T ss_pred hhhh
Confidence 7664
No 173
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=67.81 E-value=6.9 Score=31.25 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=32.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCC------CeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDL------DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL------~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
+.-|+-+||+.|+.+.-.|.++-- .+-.+++. .-+++.+..+-..+|.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD-----~~~~la~~~~V~~iPTf~ 73 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID-----EVPDFNKMYELYDPPTVM 73 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC-----CCHHHHHHcCCCCCCEEE
Confidence 444777999999987766654422 22223331 235788888888899994
No 174
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=67.66 E-value=7.3 Score=31.91 Aligned_cols=33 Identities=30% Similarity=0.659 Sum_probs=25.4
Q ss_pred CeEEEEcCCCcchHHH----HHHHHHc-CCCeEEEECC
Q 026628 140 PIEIYEYESCPFCRKV----REIVAVL-DLDVLYYPCP 172 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkV----R~aL~el-gL~ye~~~v~ 172 (235)
.|++|....||||... +.++.+. ++.++.+++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 3789999999999955 4455556 8999998864
No 175
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=67.02 E-value=4.6 Score=29.97 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=32.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----C--CCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----g--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.++|+.|+...-.+.++ + +.+-..++. ..+++.+..+-..+|.++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ-----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC-----chHHHHHHcCCCcccEEE
Confidence 46667789999999775555432 2 333333432 234566777888999883
No 176
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=66.90 E-value=60 Score=27.98 Aligned_cols=31 Identities=16% Similarity=0.602 Sum_probs=20.2
Q ss_pred eEEEEcCCCcchHHHHHHH----HHcCCCeEEEEC
Q 026628 141 IEIYEYESCPFCRKVREIV----AVLDLDVLYYPC 171 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL----~elgL~ye~~~v 171 (235)
+..|.-.+||+|++..-.| ++.|+.+.-+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~ 107 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTL 107 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 6667779999999874333 444655544443
No 177
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=65.62 E-value=8.4 Score=28.82 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=38.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHcC----CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhh
Q 026628 141 IEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elg----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~ 216 (235)
+..|...+||.|+...-.+.++. -.+.++.+.........++.+..+...+|++.+ + + +.+.
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~--~--------~----~~~~ 90 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLS--A--------E----LGMA 90 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEec--H--------H----HHhh
Confidence 34455689999997654454321 122333221122223455777766666887764 1 1 3467
Q ss_pred hCCCCCCcc
Q 026628 217 YGDGSVPFM 225 (235)
Q Consensus 217 yg~~~~P~~ 225 (235)
|+-..+|..
T Consensus 91 ~~~~~~P~~ 99 (114)
T cd02967 91 YQVSKLPYA 99 (114)
T ss_pred cCCCCcCeE
Confidence 776667754
No 178
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=65.35 E-value=33 Score=28.95 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=18.4
Q ss_pred eEEEEcCCCcchHHHHHHH----HHcCCCeEEEE
Q 026628 141 IEIYEYESCPFCRKVREIV----AVLDLDVLYYP 170 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL----~elgL~ye~~~ 170 (235)
+..|...+||.|++..-.+ ++.++++..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4456678999999754333 33466555544
No 179
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=64.63 E-value=20 Score=25.99 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=31.3
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----cC--CCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----lg--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.++|+.|+.....+.+ .. -.+....+....+ .+++.+..+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEE
Confidence 4677888999999966444432 22 2244333211110 24566666777899884
No 180
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=63.96 E-value=8.1 Score=29.61 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=34.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEe
Q 026628 141 IEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L 203 (235)
+..|+.++|+.|+.+.-.+.++ ++.+-.+++ +.. ++.+...-..+|+++-=.+|..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~----~~~--~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINA----EKA--FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEc----hhh--HHHHhcCCCcCCEEEEEECCEEE
Confidence 4567779999999877666543 333333332 111 56667777899999422256543
No 181
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=63.95 E-value=17 Score=26.35 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=29.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-----C--CCeEE--EECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-----D--LDVLY--YPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-----g--L~ye~--~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.++|+.|+...-.+.+. + -.+.+ .++.. ..++.+..+-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-----~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-----HRELCSEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-----ChhhHhhcCCCcCCEEE
Confidence 56677789999999765444322 2 12333 33321 22455556677899883
No 182
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=63.86 E-value=6.3 Score=29.20 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=31.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----CCCeEE--EECCCCCCCChhHHHhhCCCCceeEE-EeC
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLY--YPCPRNGPNFRPKVLQMGGKKQFPYM-VDP 197 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----gL~ye~--~~v~~~g~~~r~e~l~inp~~qVPvL-vDp 197 (235)
-+..|+.++|+.|+...-.+.++ +-.+.+ ++|.. .+++.+...-..+|.+ +.+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~-----~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD-----DRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc-----cHHHHHHcCCCccCEEEEEc
Confidence 45667789999999765554332 212333 34421 2456666677889998 344
No 183
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=63.57 E-value=29 Score=29.08 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=17.2
Q ss_pred EEEEcCCCcchHHHHHHHH---HcCCCeEEEE
Q 026628 142 EIYEYESCPFCRKVREIVA---VLDLDVLYYP 170 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~---elgL~ye~~~ 170 (235)
..|...+||+|++-.-.|. ++|+.+..+.
T Consensus 73 v~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~ 104 (185)
T PRK15412 73 LNVWATWCPTCRAEHQYLNQLSAQGIRVVGMN 104 (185)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3355689999997554444 3455544444
No 184
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=63.17 E-value=28 Score=25.71 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=32.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc----C--CCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el----g--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.++|+.|+...-.+.+. + +.+-..++.. + ...++.+..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~-~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--D-KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--c-ccHHHHHHcCCCcCCEEE
Confidence 46777889999999765444332 2 2222234422 1 134566677788899983
No 185
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=62.29 E-value=9.9 Score=27.63 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=32.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHcC----CCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 141 IEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elg----L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
+..|+.+||+.|+...-.+.+.. -.+.+..+.. + ..+++.+..+-..+|+++
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~--~-~~~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNC--D-AQPQIAQQFGVQALPTVY 71 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEec--c-CCHHHHHHcCCCCCCEEE
Confidence 55567799999998866665432 2233332211 1 234677777788899994
No 186
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=62.22 E-value=19 Score=27.94 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=27.0
Q ss_pred cCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 146 ~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
..+||.|+.-...|.++ +..++++-+..+.......|.+... ..+|++.|+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~-~~~p~~~D~ 88 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF-LPFPVYADP 88 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC-CCCeEEECC
Confidence 47999999754444322 1233443332222222234555544 468999986
No 187
>PTZ00102 disulphide isomerase; Provisional
Probab=62.12 E-value=56 Score=30.86 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCeEEEEcCCCcchHHHHHH-------HHHcCCCeEE--EECCCCCCCChhHHHhhCCCCceeEE-EeCCCCeEe----e
Q 026628 139 KPIEIYEYESCPFCRKVREI-------VAVLDLDVLY--YPCPRNGPNFRPKVLQMGGKKQFPYM-VDPNTGVSM----Y 204 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~a-------L~elgL~ye~--~~v~~~g~~~r~e~l~inp~~qVPvL-vDpn~G~~L----~ 204 (235)
.-+..|+.+||++|++..-. +...+-++.+ ++|. ...++.+..+-..+|.+ +-.+++..- .
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~-----~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~ 125 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT-----EEMELAQEFGVRGYPTIKFFNKGNPVNYSGGR 125 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC-----CCHHHHHhcCCCcccEEEEEECCceEEecCCC
Confidence 35777888999999966422 2222323333 4442 12356666677789988 333233322 2
Q ss_pred CHHHHHHHHHhhhCC
Q 026628 205 ESDNIIKYLVGKYGD 219 (235)
Q Consensus 205 ES~aIi~YL~~~yg~ 219 (235)
....|++||.+..+.
T Consensus 126 ~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 126 TADGIVSWIKKLTGP 140 (477)
T ss_pred CHHHHHHHHHHhhCC
Confidence 468899999998764
No 188
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.10 E-value=32 Score=29.69 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=48.8
Q ss_pred CeEEEEcCCCcchHH----------HHHHHHHcCCCeEE-------EECCCCCC---CChhHHHhhCCCCceeEEE--eC
Q 026628 140 PIEIYEYESCPFCRK----------VREIVAVLDLDVLY-------YPCPRNGP---NFRPKVLQMGGKKQFPYMV--DP 197 (235)
Q Consensus 140 ~ltLY~~e~cP~Crk----------VR~aL~elgL~ye~-------~~v~~~g~---~~r~e~l~inp~~qVPvLv--Dp 197 (235)
.+-+++.+.|+||.+ +|++|.+.=.-|+. +....++. ...+|+.+...-...|.++ |.
T Consensus 45 lllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk 124 (182)
T COG2143 45 LLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDK 124 (182)
T ss_pred EEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcC
Confidence 467788899999974 46666652111111 11111111 1246788888888999995 44
Q ss_pred CCCeEeeC---------HHHHHHHHHhhh
Q 026628 198 NTGVSMYE---------SDNIIKYLVGKY 217 (235)
Q Consensus 198 n~G~~L~E---------S~aIi~YL~~~y 217 (235)
+|..|.+ =.+|+.|.++.+
T Consensus 125 -~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 125 -TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred -CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 5666665 378999998865
No 189
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=61.08 E-value=11 Score=30.93 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=22.6
Q ss_pred eEEEEcCCCcchHHHHH----HHHHcCCCeEEEEC
Q 026628 141 IEIYEYESCPFCRKVRE----IVAVLDLDVLYYPC 171 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~----aL~elgL~ye~~~v 171 (235)
|++|....||||..... +..+.+++++.+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 46888899999996544 44456777777765
No 190
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=61.06 E-value=27 Score=34.78 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=49.1
Q ss_pred eEEEEcCCCcchHHH-------HHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEE-EeCCCCe-----EeeCHH
Q 026628 141 IEIYEYESCPFCRKV-------REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM-VDPNTGV-----SMYESD 207 (235)
Q Consensus 141 ltLY~~e~cP~CrkV-------R~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvL-vDpn~G~-----~L~ES~ 207 (235)
+..|+-+||..|.+. -..|.+.+=+...-.++.. . ..++.....-..+|.| +--|+.. -..+..
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~-~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad 122 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--E-ESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREAD 122 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--h-hhhhHhhhcCCCCCeEEEEecCCcceeccCcccHH
Confidence 566778999999853 3445555334444332111 1 1457777777888999 4333321 356789
Q ss_pred HHHHHHHhhhCCC
Q 026628 208 NIIKYLVGKYGDG 220 (235)
Q Consensus 208 aIi~YL~~~yg~~ 220 (235)
.|+.||.++.|+.
T Consensus 123 gIv~wl~kq~gPa 135 (493)
T KOG0190|consen 123 GIVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHHhccCCC
Confidence 9999999999864
No 191
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=59.84 E-value=46 Score=33.33 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=41.7
Q ss_pred eEEEEcCCCcchHHHHHH-------HHH-cCCCeEEEECCCCCCCChhHHHhhCCCCceeEE--EeCCCCeEe-------
Q 026628 141 IEIYEYESCPFCRKVREI-------VAV-LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTGVSM------- 203 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~a-------L~e-lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvL--vDpn~G~~L------- 203 (235)
+.-|+-+||+.|+..... .++ .++.+...++..+++ ...++.+..+...+|.+ +|+ +|..+
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~-~~~~l~~~~~v~g~Pt~~~~~~-~G~~i~~~r~~G 555 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNA-EDVALLKHYNVLGLPTILFFDA-QGQEIPDARVTG 555 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCCh-hhHHHHHHcCCCCCCEEEEECC-CCCCcccccccC
Confidence 344667999999975332 122 233333334432222 23567777788889998 344 44331
Q ss_pred -eCHHHHHHHHHh
Q 026628 204 -YESDNIIKYLVG 215 (235)
Q Consensus 204 -~ES~aIi~YL~~ 215 (235)
.+..++.++|++
T Consensus 556 ~~~~~~f~~~L~~ 568 (571)
T PRK00293 556 FMDAAAFAAHLRQ 568 (571)
T ss_pred CCCHHHHHHHHHH
Confidence 245677777765
No 192
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=59.73 E-value=25 Score=31.90 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=38.3
Q ss_pred CeEEEEcCCCcchHH----HHHHHHHcCCCeEEEECCCCC-C---CCh--hHHHhhCCCCceeEE--EeCCCCe
Q 026628 140 PIEIYEYESCPFCRK----VREIVAVLDLDVLYYPCPRNG-P---NFR--PKVLQMGGKKQFPYM--VDPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~Crk----VR~aL~elgL~ye~~~v~~~g-~---~~r--~e~l~inp~~qVPvL--vDpn~G~ 201 (235)
.+.+|.-..||+|.+ ++.+....|+.+..+.++-.+ + +.+ ....+.-+...+|.| ++++++.
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 466666788999995 455667789888887653221 1 111 122333455679998 6776553
No 193
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=59.23 E-value=35 Score=26.28 Aligned_cols=19 Identities=21% Similarity=0.390 Sum_probs=12.7
Q ss_pred eEEEEcCCCcchHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIV 159 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL 159 (235)
+..|...+|+.|++..-.|
T Consensus 22 ll~Fwa~wC~~C~~~~p~l 40 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKL 40 (131)
T ss_pred EEEEECCCChHHHHHhHHH
Confidence 3444558999999754444
No 194
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=59.18 E-value=55 Score=26.14 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=34.4
Q ss_pred eEEEEc-------CCCcchHHHHHHH----HHcC--CCeEEEECCCCC--CCChhHHHhhCCCC-ceeEEEeCCCCeEee
Q 026628 141 IEIYEY-------ESCPFCRKVREIV----AVLD--LDVLYYPCPRNG--PNFRPKVLQMGGKK-QFPYMVDPNTGVSMY 204 (235)
Q Consensus 141 ltLY~~-------e~cP~CrkVR~aL----~elg--L~ye~~~v~~~g--~~~r~e~l~inp~~-qVPvLvDpn~G~~L~ 204 (235)
+..|.- .|||.|+.+.-.+ .+.. +.+..+++.... .....++.....-. .+|+++-=++|..+.
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceec
Confidence 455666 7999999664444 3433 444444442211 01123555544444 799994222555555
Q ss_pred CH
Q 026628 205 ES 206 (235)
Q Consensus 205 ES 206 (235)
|.
T Consensus 105 ~~ 106 (119)
T cd02952 105 ED 106 (119)
T ss_pred ch
Confidence 54
No 195
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=59.17 E-value=14 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.6
Q ss_pred CeEEEEcCCCcchHHH----HHHHHHcCCCeEEEEC
Q 026628 140 PIEIYEYESCPFCRKV----REIVAVLDLDVLYYPC 171 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkV----R~aL~elgL~ye~~~v 171 (235)
.|.+|....||||... +.++.+.+++++.+++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 5889999999999965 4444567888887774
No 196
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=58.66 E-value=20 Score=28.13 Aligned_cols=51 Identities=10% Similarity=-0.000 Sum_probs=30.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcC------CCeEEEECCCCCCCChhHHH-hhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLD------LDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elg------L~ye~~~v~~~g~~~r~e~l-~inp~~qVPvLv 195 (235)
-+..|+-+||+.|+...-.+.++. +.+--++|. . .+++. +...-..+|.|+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d----~-~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW----W-PQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC----C-ChHHHHHhcCCcccCEEE
Confidence 466788899999998766555442 222223332 1 22344 355667899883
No 197
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=58.60 E-value=7.3 Score=28.46 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=29.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----cC--CCeEEEECCCCCCCChhHHHhhCCCCceeEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAV----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM 194 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e----lg--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvL 194 (235)
-+.+++.++|+.|+...-.+.+ .. +.+-..++. ..+++.+..+-..+|++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~-----~~~~~~~~~~i~~~P~~ 76 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD-----VHQSLAQQYGVRGFPTI 76 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc-----chHHHHHHCCCCccCEE
Confidence 4566777999999987544433 22 223333331 23456666666789988
No 198
>PLN02309 5'-adenylylsulfate reductase
Probab=58.25 E-value=43 Score=32.92 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHh-hCCCCceeEEE-eCCC--CeEeeC---
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMV-DPNT--GVSMYE--- 205 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~-inp~~qVPvLv-Dpn~--G~~L~E--- 205 (235)
..-+..|+-+||++|+...-.+.++ +-.+.+..+..... ..++.+ ...-..+|+|+ -+++ ..+.|.
T Consensus 366 k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~ 443 (457)
T PLN02309 366 EPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--QKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEK 443 (457)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc--chHHHHhhCCCceeeEEEEEeCCCCCeeecCCCC
Confidence 3457778889999999765544332 22233332211111 123443 45677899994 3322 234554
Q ss_pred --HHHHHHHHHh
Q 026628 206 --SDNIIKYLVG 215 (235)
Q Consensus 206 --S~aIi~YL~~ 215 (235)
..+|+.|+..
T Consensus 444 R~~~~L~~fv~~ 455 (457)
T PLN02309 444 RDVDSLLSFVNS 455 (457)
T ss_pred cCHHHHHHHHHH
Confidence 3778888765
No 199
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=57.92 E-value=14 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHc------CCCeEEEECC
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP 172 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~el------gL~ye~~~v~ 172 (235)
-.+..|....||+|++....+... ++.++.+++.
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 357777888999999876666432 4566655543
No 200
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=57.43 E-value=57 Score=24.77 Aligned_cols=73 Identities=14% Similarity=0.330 Sum_probs=41.6
Q ss_pred EEEEcCCCcchHHHH-HHHH------HcCCCeEEEECCCCCCCChhHHHhhCCCCceeEE--EeCCCCeEe------eCH
Q 026628 142 EIYEYESCPFCRKVR-EIVA------VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTGVSM------YES 206 (235)
Q Consensus 142 tLY~~e~cP~CrkVR-~aL~------elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvL--vDpn~G~~L------~ES 206 (235)
.-++.++|++|.+.. ..+. ..+-.|....+....+ ...++....+...+|++ +++++|..+ .+.
T Consensus 22 v~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~ 100 (114)
T cd02958 22 VYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITP 100 (114)
T ss_pred EEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCH
Confidence 334568999999753 2332 2222455544322222 34578888888899999 566345433 234
Q ss_pred HHHHHHHHh
Q 026628 207 DNIIKYLVG 215 (235)
Q Consensus 207 ~aIi~YL~~ 215 (235)
.+++..|.+
T Consensus 101 ~~f~~~L~~ 109 (114)
T cd02958 101 EDLLSQLIE 109 (114)
T ss_pred HHHHHHHHH
Confidence 556665554
No 201
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=57.12 E-value=54 Score=30.46 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=46.6
Q ss_pred CeEEEEcCCCcchHHHHHHHH-------HcC--CCeEEEECCCCCCCChhHHHhhCCCCceeEE-EeCCCCe--Ee----
Q 026628 140 PIEIYEYESCPFCRKVREIVA-------VLD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM-VDPNTGV--SM---- 203 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~-------elg--L~ye~~~v~~~g~~~r~e~l~inp~~qVPvL-vDpn~G~--~L---- 203 (235)
-+.+|+.+||+.|+...-.+. ..+ +.+-.++|.. ..++.+..+-..+|++ +..+++. .-
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-----EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGP 95 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-----cHHHHHhCCCccccEEEEEeCCccceeEecCC
Confidence 467788899999997653332 223 3444445422 2456666777789988 3332332 22
Q ss_pred eCHHHHHHHHHhhhCC
Q 026628 204 YESDNIIKYLVGKYGD 219 (235)
Q Consensus 204 ~ES~aIi~YL~~~yg~ 219 (235)
.+..+|..|+.+..+.
T Consensus 96 ~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 96 RDADGIVKYMKKQSGP 111 (462)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 3578899999888764
No 202
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=56.68 E-value=39 Score=26.02 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=28.0
Q ss_pred EEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCC---CC---CCChhHHHhhCCCCceeEEEeC
Q 026628 142 EIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPR---NG---PNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~---~g---~~~r~e~l~inp~~qVPvLvDp 197 (235)
..|...+||.|++-.-.|.++ +..++++-+.. .. ...-.++.+.++. .+|++.|+
T Consensus 28 l~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~D~ 93 (126)
T cd03012 28 LDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGI-TYPVANDN 93 (126)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCC-CCCEEECC
Confidence 334457999999764444332 23344443311 11 1112345555443 68988874
No 203
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=56.15 E-value=4.5 Score=32.66 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCcchHHHH----HHHHHc-CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 139 KPIEIYEYESCPFCRKVR----EIVAVL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR----~aL~el-gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
..+.++.=.|||.|+..- -++++. +|++.+...+. ....-+.|+. ++...||+++
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~-~~el~~~~lt-~g~~~IP~~I 102 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE-NKELMDQYLT-NGGRSIPTFI 102 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH-HHHHTTTTTT--SS--SSEEE
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC-ChhHHHHHHh-CCCeecCEEE
Confidence 357778889999999543 334444 56666654211 1111233445 7888999995
No 204
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.48 E-value=14 Score=30.57 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=21.8
Q ss_pred eEEEEcCCCcchHHHHH----HHHHc----CCCeEEEEC
Q 026628 141 IEIYEYESCPFCRKVRE----IVAVL----DLDVLYYPC 171 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~----aL~el----gL~ye~~~v 171 (235)
|++|....||||..... ++++. +++++.+++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 46889999999995544 44455 567777664
No 205
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=54.71 E-value=78 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.625 Sum_probs=19.4
Q ss_pred eEEEEcCCCcchHHHHHHHH----HcCCCeEEEE
Q 026628 141 IEIYEYESCPFCRKVREIVA----VLDLDVLYYP 170 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~----elgL~ye~~~ 170 (235)
+..|...+||+|++-.-.|. +.++.+..+.
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs 87 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFS 87 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEE
Confidence 56667789999997655554 3355544444
No 206
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=54.41 E-value=28 Score=27.23 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=25.7
Q ss_pred CCcchHHHHHHHHH-------cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 148 SCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 148 ~cP~CrkVR~aL~e-------lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
+||.|+.-...|.+ .++.+..+.. .....-.+|++. -...+|++.|+
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~--~~~~~~~~~~~~-~~~~~~~~~D~ 93 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSS--DDDPPVREFLKK-YGINFPVLSDP 93 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEE--SSSHHHHHHHHH-TTTTSEEEEET
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecc--cCCHHHHHHHHh-hCCCceEEech
Confidence 89999976544433 3344444432 222124556665 33468888874
No 207
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=20 Score=30.27 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.3
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCCeEE----EECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEe
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLDVLY----YPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM 203 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~ye~----~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L 203 (235)
-+.-|+-+||..|+...-.|+++.-+|.- +.+. -....++.....-..||+++ -. +|..+
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvd---tD~~~ela~~Y~I~avPtvlvfk-nGe~~ 128 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVD---TDEHPELAEDYEISAVPTVLVFK-NGEKV 128 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEc---cccccchHhhcceeeeeEEEEEE-CCEEe
Confidence 46779999999999888888877555432 2221 11235677888889999993 33 45433
No 208
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=53.22 E-value=35 Score=30.89 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=37.7
Q ss_pred CeEEEEcCCCcchHH----HHHHHHHcCCCeEEEECCCC-CCC---Chh--HHHhhCCCCceeEE--EeCCCCe
Q 026628 140 PIEIYEYESCPFCRK----VREIVAVLDLDVLYYPCPRN-GPN---FRP--KVLQMGGKKQFPYM--VDPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~Crk----VR~aL~elgL~ye~~~v~~~-g~~---~r~--e~l~inp~~qVPvL--vDpn~G~ 201 (235)
.+.+|.-..||||.+ ++.+....|+++.-+.++-. .+. .+. ...+.-+...+|.| ++++++.
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 466667789999994 56666778998877764321 111 111 12233344678998 6776653
No 209
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=52.32 E-value=42 Score=28.24 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCcee-------EEEeCCCCeEee---CHH
Q 026628 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFP-------YMVDPNTGVSMY---ESD 207 (235)
Q Consensus 138 ~~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVP-------vLvDpn~G~~L~---ES~ 207 (235)
..+++.|..+.|..|..--..|+.+|..+..+... ....+++. ..|| +.+. +|..+= --.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~-----d~~alK~~---~gIp~e~~SCHT~VI--~Gy~vEGHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETD-----DFLALKRR---LGIPYEMQSCHTAVI--NGYYVEGHVPAE 94 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecC-----cHHHHHHh---cCCChhhccccEEEE--cCEEEeccCCHH
Confidence 34699999999999999999999999888876521 11122221 2233 1233 343222 268
Q ss_pred HHHHHHHhhh
Q 026628 208 NIIKYLVGKY 217 (235)
Q Consensus 208 aIi~YL~~~y 217 (235)
||.+.|+++.
T Consensus 95 aI~~ll~~~p 104 (149)
T COG3019 95 AIARLLAEKP 104 (149)
T ss_pred HHHHHHhCCC
Confidence 9999999987
No 210
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=51.16 E-value=43 Score=25.22 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=14.4
Q ss_pred CeEEEEcCCCcchHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVA 160 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~ 160 (235)
.+..|...+|+.|+..--.|.
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~ 43 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVN 43 (123)
T ss_pred EEEEEECCcChhhhhhChHHH
Confidence 355566789999997644444
No 211
>smart00594 UAS UAS domain.
Probab=51.10 E-value=1.1e+02 Score=23.89 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=34.2
Q ss_pred CeEEEEcCCCcchHHH-HHHHH------HcCCCeEEEECCCCCCCChhHHHhhCCCCceeEE--EeCCCCe
Q 026628 140 PIEIYEYESCPFCRKV-REIVA------VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTGV 201 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkV-R~aL~------elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvL--vDpn~G~ 201 (235)
.+...+.++|++|.+. |..+. ..+-.|....+...... ..++.+.....++|.+ +++++|.
T Consensus 30 ~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 30 LWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred EEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCCCEEEEEecCCCc
Confidence 3455566899999863 33222 12224554333222222 2457777777789999 5776543
No 212
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=50.32 E-value=63 Score=31.85 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=40.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHHc-------CCCeEEEECCCCCCCChhHHH-hhCCCCceeEEE-eCCCC--eEeeC---
Q 026628 140 PIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV-DPNTG--VSMYE--- 205 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~el-------gL~ye~~~v~~~g~~~r~e~l-~inp~~qVPvLv-Dpn~G--~~L~E--- 205 (235)
-+..|+-+||++|+...-.+.++ ++.+..+++... ..++. +...-..+|.++ -.|++ .+.|+
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~----~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~ 449 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD----QKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEK 449 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC----ccHHHHHHcCCCccceEEEEECCCCCceeCCCCC
Confidence 46667889999999765444322 233433444211 11233 445667899883 33232 24564
Q ss_pred --HHHHHHHHHh
Q 026628 206 --SDNIIKYLVG 215 (235)
Q Consensus 206 --S~aIi~YL~~ 215 (235)
..+|+.|++.
T Consensus 450 R~~e~L~~Fv~~ 461 (463)
T TIGR00424 450 RDVDSLMSFVNL 461 (463)
T ss_pred CCHHHHHHHHHh
Confidence 3677777753
No 213
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=50.08 E-value=73 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=14.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHc
Q 026628 141 IEIYEYESCPFCRKVREIVAVL 162 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el 162 (235)
+..|...+||.|+...-.|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 4445568999999765555443
No 214
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=49.74 E-value=25 Score=28.87 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=21.9
Q ss_pred CeEEEEcCCCcchHHHHH----HHHHc--CCCeEEEE
Q 026628 140 PIEIYEYESCPFCRKVRE----IVAVL--DLDVLYYP 170 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~----aL~el--gL~ye~~~ 170 (235)
+|.+|....||||..... ++++. +++++.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 478899999999995443 44444 67777665
No 215
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=48.83 E-value=1e+02 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=13.2
Q ss_pred eEEEEcCCCcchHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVA 160 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~ 160 (235)
+..|...+|+.|+...-.|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 33455689999997654443
No 216
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=48.80 E-value=16 Score=28.81 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCcchHHHHHHH----HHc----CCCeEEEECCC
Q 026628 139 KPIEIYEYESCPFCRKVREIV----AVL----DLDVLYYPCPR 173 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL----~el----gL~ye~~~v~~ 173 (235)
-.+++|....||+|++....+ ++. .+.+.+++++.
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 357889999999999875544 333 45666666643
No 217
>PTZ00056 glutathione peroxidase; Provisional
Probab=47.45 E-value=47 Score=28.42 Aligned_cols=74 Identities=14% Similarity=0.237 Sum_probs=36.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHc-------CCCeEEEECCC------CCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPR------NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD 207 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el-------gL~ye~~~v~~------~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~ 207 (235)
+.-|...+||+|++-.-.|.++ |+.+.-+.+.. .....-.+|.+.++. .+|++.|. +..-.+..
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl~d~--~v~g~~~~ 119 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFFEPI--EVNGENTH 119 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Cceeeeee--eccCCccC
Confidence 3445568999998644333332 44333333311 111123445555543 68988652 11112455
Q ss_pred HHHHHHHhhh
Q 026628 208 NIIKYLVGKY 217 (235)
Q Consensus 208 aIi~YL~~~y 217 (235)
.+..||.+..
T Consensus 120 ~l~~~l~~~~ 129 (199)
T PTZ00056 120 ELFKFLKANC 129 (199)
T ss_pred HHHHHHHHhC
Confidence 6677766443
No 218
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.63 E-value=50 Score=27.13 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCCcchHHH----HHHHHHcCCCeEEEECCCCC-CCCh---hHHHhhCCC-CceeEEEe-CCCCeEeeCHHHHHHHHHh
Q 026628 147 ESCPFCRKV----REIVAVLDLDVLYYPCPRNG-PNFR---PKVLQMGGK-KQFPYMVD-PNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 147 e~cP~CrkV----R~aL~elgL~ye~~~v~~~g-~~~r---~e~l~inp~-~qVPvLvD-pn~G~~L~ES~aIi~YL~~ 215 (235)
.|||.|+++ +.+|++...++.++.|.-+. +.++ ..|...... .-||.|+- .+.+..+.+...-..+|.+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 589999965 66777766666665431111 1111 123332222 57899953 2345677777776666654
No 219
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=45.50 E-value=25 Score=27.97 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=38.7
Q ss_pred CCeEEEEcCC--CcchHHHHHHHHHcCCCe----E--EEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeC
Q 026628 139 KPIEIYEYES--CPFCRKVREIVAVLDLDV----L--YYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (235)
Q Consensus 139 ~~ltLY~~e~--cP~CrkVR~aL~elgL~y----e--~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~E 205 (235)
..+.+|+-++ ||.|+.+.-.|.++--.| . .+++ + ..+++.+...-..+|.|+-=.+|..+..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdi----d-~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGR----A-DEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEEC----C-CCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3566777774 999998877766543322 2 2332 1 1247888889999999943225665443
No 220
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=45.12 E-value=32 Score=25.82 Aligned_cols=50 Identities=28% Similarity=0.461 Sum_probs=25.6
Q ss_pred CCCcchHHHHHHHHHc-----CCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 147 ESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 147 e~cP~CrkVR~aL~el-----gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
.+||.|......|.++ ...+.+.-+.......-.++.+..+ ..+|++.|+
T Consensus 36 ~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~-~~~~~~~D~ 90 (124)
T PF00578_consen 36 AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG-LPFPVLSDP 90 (124)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT-CSSEEEEET
T ss_pred cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc-cccccccCc
Confidence 3899998765555432 2233443321122112234444433 678888884
No 221
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=44.34 E-value=69 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=17.6
Q ss_pred eEEEEcCCCcchHHHHHHHHH---cCCCeEEEE
Q 026628 141 IEIYEYESCPFCRKVREIVAV---LDLDVLYYP 170 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~e---lgL~ye~~~ 170 (235)
+..|...+||.|++..-.+.+ .|+.+..+.
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~ 99 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVD 99 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 344556899999976555543 344444333
No 222
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=44.05 E-value=27 Score=29.41 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=32.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHcC---CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEe
Q 026628 141 IEIYEYESCPFCRKVREIVAVLD---LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elg---L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L 203 (235)
+..|+.++|+.|+.+--.|..+- -.+.++.+... .. ++.+..+-..+|+|+-=.+|..+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d--~~--~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS--AT--GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc--ch--hhHHhCCCCCCCEEEEEECCEEE
Confidence 33456699999997755554331 12333332111 11 56677788899999422245533
No 223
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=43.79 E-value=67 Score=27.67 Aligned_cols=27 Identities=0% Similarity=-0.045 Sum_probs=19.5
Q ss_pred CeEE--EEcCCCcchH---HHHHHHHHcCCCe
Q 026628 140 PIEI--YEYESCPFCR---KVREIVAVLDLDV 166 (235)
Q Consensus 140 ~ltL--Y~~e~cP~Cr---kVR~aL~elgL~y 166 (235)
++.| |.-.+|+.|+ ....+|+..|+++
T Consensus 60 KV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 60 KVRVVHHIAGRTSAKEXNASLIDAIKAAKFPP 91 (184)
T ss_pred CEEEEEEEecCCChhhccchHHHHHHHcCCCc
Confidence 4444 4457999999 4566777789998
No 224
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=42.06 E-value=61 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=15.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV 161 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e 161 (235)
.+..|...+|+.|++....|.+
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEEeecccChhHHHHhHHHHH
Confidence 4556667899999976555543
No 225
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.35 E-value=59 Score=31.99 Aligned_cols=73 Identities=19% Similarity=0.403 Sum_probs=53.1
Q ss_pred CCCcchHHHHHHHHHcC--C-CeEEEECCCCCCCChhHHHhh---CC--CCceeEE----EeC-CCCeEeeCHHHHHHHH
Q 026628 147 ESCPFCRKVREIVAVLD--L-DVLYYPCPRNGPNFRPKVLQM---GG--KKQFPYM----VDP-NTGVSMYESDNIIKYL 213 (235)
Q Consensus 147 e~cP~CrkVR~aL~elg--L-~ye~~~v~~~g~~~r~e~l~i---np--~~qVPvL----vDp-n~G~~L~ES~aIi~YL 213 (235)
..|||--|+-++..++. + +|.++.+.+..+.+.+++.++ |+ ..+-|++ +|- ..|..|...++-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 36999999999888764 4 588887655544455555444 33 3578988 453 2457899999999999
Q ss_pred HhhhCC
Q 026628 214 VGKYGD 219 (235)
Q Consensus 214 ~~~yg~ 219 (235)
...||-
T Consensus 82 ~~yyg~ 87 (452)
T cd05295 82 ESYYGI 87 (452)
T ss_pred HHHhCc
Confidence 999994
No 226
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=41.08 E-value=56 Score=25.47 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=25.3
Q ss_pred cCCCcchHHHHHHHHH-------cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 146 YESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 146 ~e~cP~CrkVR~aL~e-------lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
..+||.|.+....|.+ .|+.+..+.. .....-.+|.+..+ ..+|++-|+
T Consensus 38 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~--d~~~~~~~~~~~~~-~~~~~~~D~ 93 (149)
T cd03018 38 LAFTPVCTKELCALRDSLELFEAAGAEVLGISV--DSPFSLRAWAEENG-LTFPLLSDF 93 (149)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC--CCHHHHHHHHHhcC-CCceEecCC
Confidence 4689999965444432 2444333332 22222345555554 367777663
No 227
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=40.68 E-value=51 Score=25.29 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=30.3
Q ss_pred eEEEEc--CCCcchHHHHHHHHH-------cCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 141 IEIYEY--ESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 141 ltLY~~--e~cP~CrkVR~aL~e-------lgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
+.|+-+ .+||.|..-...|.+ .++.+..+.. +.......|.+..+...+|+|.|+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~--d~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSV--DSPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHhcccCCCceEEECC
Confidence 444444 589999975444443 3443333332 222223456666556678988875
No 228
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=40.67 E-value=64 Score=24.81 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCCcchHHHHHHH-------HHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 147 ESCPFCRKVREIV-------AVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 147 e~cP~CrkVR~aL-------~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
.+||.|......| ...|+ +++-+.......-.+|.+..+. .+|++.|+
T Consensus 34 ~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~-~~~~l~D~ 88 (140)
T cd03017 34 DDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSVESHAKFAEKYGL-PFPLLSDP 88 (140)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhCC-CceEEECC
Confidence 6799998643333 23344 3433322222233456665554 68888875
No 229
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.51 E-value=41 Score=30.13 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCcchHH----HHHHHHHcCCCe
Q 026628 139 KPIEIYEYESCPFCRK----VREIVAVLDLDV 166 (235)
Q Consensus 139 ~~ltLY~~e~cP~Crk----VR~aL~elgL~y 166 (235)
..|.+|+...||||.. .+.++.+.+..+
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 4577888899999984 444555556333
No 230
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=39.99 E-value=35 Score=28.31 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.7
Q ss_pred eEEEEcCCCcchHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAV 161 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~e 161 (235)
+..|+.+||+.|+...-.+.+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~ 71 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAE 71 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 666777999999977655543
No 231
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=39.02 E-value=30 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=16.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIVAV 161 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~e 161 (235)
-+.+|+.++|++|+.....+.+
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~ 42 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEE 42 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHH
Confidence 4667788999999977665543
No 232
>PHA03075 glutaredoxin-like protein; Provisional
Probab=38.23 E-value=39 Score=27.55 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHcCCCeEEEE
Q 026628 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYP 170 (235)
Q Consensus 139 ~~ltLY~~e~cP~CrkVR~aL~elgL~ye~~~ 170 (235)
..+.|++-+.|+-|.-+..+|+++.=+|++..
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilr 34 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILR 34 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEE
Confidence 35889999999999999999999888888743
No 233
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=37.34 E-value=1.3e+02 Score=23.03 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=34.2
Q ss_pred eEEEEcCCCcc-hHHHHHHHHH-------cC---CCeEEEECCCC--CCCChhHHHhhCCCCceeEEEeCCCCeEeeCHH
Q 026628 141 IEIYEYESCPF-CRKVREIVAV-------LD---LDVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD 207 (235)
Q Consensus 141 ltLY~~e~cP~-CrkVR~aL~e-------lg---L~ye~~~v~~~--g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~ 207 (235)
+..|...+|++ |.+-...|.+ .+ +.+..+..... ......+|.+..+ ..+|+|.++ .
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~~~---------~ 95 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLTGT---------P 95 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEECC---------H
Confidence 44556699997 9854333332 22 44433332211 1122344555554 356777653 2
Q ss_pred HHHHHHHhhhCC
Q 026628 208 NIIKYLVGKYGD 219 (235)
Q Consensus 208 aIi~YL~~~yg~ 219 (235)
+...-+.+.||.
T Consensus 96 ~~~~~~~~~~g~ 107 (142)
T cd02968 96 EEIEALAKAFGV 107 (142)
T ss_pred HHHHHHHHHhcE
Confidence 344446666663
No 234
>PTZ00102 disulphide isomerase; Provisional
Probab=36.21 E-value=58 Score=30.77 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcC--------CCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeE--ee----
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLD--------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVS--MY---- 204 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elg--------L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~--L~---- 204 (235)
-+..|+.+||+.|+...-.+.++. +.+-..++..+. ...+...-..+|.++ -++++.. .+
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~-----~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~ 452 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE-----TPLEEFSWSAFPTILFVKAGERTPIPYEGER 452 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc-----cchhcCCCcccCeEEEEECCCcceeEecCcC
Confidence 355667799999997766655432 112222332211 122233445688882 2223322 22
Q ss_pred CHHHHHHHHHhhhC
Q 026628 205 ESDNIIKYLVGKYG 218 (235)
Q Consensus 205 ES~aIi~YL~~~yg 218 (235)
....|.++|.+...
T Consensus 453 ~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 453 TVEGFKEFVNKHAT 466 (477)
T ss_pred CHHHHHHHHHHcCC
Confidence 35778888888654
No 235
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=35.25 E-value=58 Score=26.08 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=27.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHc-----CCCeEEEECCCC-------C-CCChhHHHhhCCCCceeEEEe
Q 026628 141 IEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRN-------G-PNFRPKVLQMGGKKQFPYMVD 196 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el-----gL~ye~~~v~~~-------g-~~~r~e~l~inp~~qVPvLvD 196 (235)
+..|...+|| |++-.-.|.++ +-.+.++-+..+ + ...-.+|++.+-...+|++.|
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d 93 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAK 93 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeee
Confidence 3345568999 98754444432 233444433211 1 112235555422246899875
No 236
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=34.53 E-value=1e+02 Score=27.53 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=10.9
Q ss_pred eEEEEcCCCcchHHH
Q 026628 141 IEIYEYESCPFCRKV 155 (235)
Q Consensus 141 ltLY~~e~cP~CrkV 155 (235)
+..+...+||.|+.-
T Consensus 103 vl~FwAswCp~c~~e 117 (236)
T PLN02399 103 LIVNVASKCGLTSSN 117 (236)
T ss_pred EEEEEcCCCcchHHH
Confidence 444557899999863
No 237
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=34.20 E-value=1.9e+02 Score=22.97 Aligned_cols=70 Identities=9% Similarity=0.054 Sum_probs=40.2
Q ss_pred eEEEEcCCCcc--hH--HHH-----HHHH---HcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCCeEe----
Q 026628 141 IEIYEYESCPF--CR--KVR-----EIVA---VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM---- 203 (235)
Q Consensus 141 ltLY~~e~cP~--Cr--kVR-----~aL~---elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G~~L---- 203 (235)
+..|.-.||+. |+ ... ++.. ..++.+--+++.. .+++.+..+-..+|+|+ -. +|..+
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-----~~~La~~~~I~~iPTl~lfk-~G~~v~~~G 104 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-----DAKVAKKLGLDEEDSIYVFK-DDEVIEYDG 104 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-----CHHHHHHcCCccccEEEEEE-CCEEEEeeC
Confidence 34444466655 98 222 1222 2355555555421 25788888999999993 33 45421
Q ss_pred -eCHHHHHHHHHhh
Q 026628 204 -YESDNIIKYLVGK 216 (235)
Q Consensus 204 -~ES~aIi~YL~~~ 216 (235)
....+|..||.+-
T Consensus 105 ~~~~~~l~~~l~~~ 118 (120)
T cd03065 105 EFAADTLVEFLLDL 118 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 2356888888764
No 238
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=33.31 E-value=1.6e+02 Score=23.61 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=29.3
Q ss_pred CCCcchHHHH----HHHHHcCCCeEEE--ECCCCC-CCC-hhHHHh--hCCCCceeEEEeCCCCeEeeCHHH
Q 026628 147 ESCPFCRKVR----EIVAVLDLDVLYY--PCPRNG-PNF-RPKVLQ--MGGKKQFPYMVDPNTGVSMYESDN 208 (235)
Q Consensus 147 e~cP~CrkVR----~aL~elgL~ye~~--~v~~~g-~~~-r~e~l~--inp~~qVPvLvDpn~G~~L~ES~a 208 (235)
.|||.|+.+. .++....-+..++ .+.... ... ...|.. ......||.|+-=+++..|.|...
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 5899999775 4555543344443 332110 000 123444 234567999964335567777543
No 239
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=33.02 E-value=35 Score=26.34 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcC---------CCeEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLD---------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elg---------L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
-+..|+.+||+.|+.....+.+.. +.+-.++|.. + ...++.+..+-..+|.++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--~-~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--E-ENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--h-hhHHHHHhCCCCCCCEEE
Confidence 466677899999996655443321 2222233311 1 124566666777899884
No 240
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.40 E-value=1.8e+02 Score=22.58 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=33.5
Q ss_pred EEcCCCcchHHHHHHHHHcCC-----CeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeE
Q 026628 144 YEYESCPFCRKVREIVAVLDL-----DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (235)
Q Consensus 144 Y~~e~cP~CrkVR~aL~elgL-----~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~ 202 (235)
|+-.||+.|+.+.=.++++-- .|-.++++. -+++.+...-..+|+++-=.+|..
T Consensus 28 F~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 28 FYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCEE
Confidence 555899999977655554433 233334422 567788888889999943224543
No 241
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=31.87 E-value=73 Score=31.33 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=43.7
Q ss_pred EEEcCCCcchHHHHHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCCCC
Q 026628 143 IYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSV 222 (235)
Q Consensus 143 LY~~e~cP~CrkVR~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~~~ 222 (235)
+-.|..|-||+.+|.+|...|-+-+.+.|...-+. ..+.+.-++.. +-.....|..|..|+.+.....+-
T Consensus 226 ~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd-~a~~ltSh~g~---------khitFiGSqpvak~i~~~AAk~LT 295 (583)
T KOG2454|consen 226 HASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPD-TAEALTSHSGV---------KHITFIGSQPVAKMIMRNAAKTLT 295 (583)
T ss_pred ceeeehhhHHHHHHHHHHHcCCCcchhheeecCcc-hHhHhhcCCCc---------ceEEEecCcHHHHHHHHhhhhhcC
Confidence 44567899999999999999998777653211111 12222222110 112344566666666665555555
Q ss_pred CcccccC
Q 026628 223 PFMLSLG 229 (235)
Q Consensus 223 P~~l~~~ 229 (235)
|-.+.+|
T Consensus 296 Pv~lELG 302 (583)
T KOG2454|consen 296 PVTLELG 302 (583)
T ss_pred cEEEeec
Confidence 5554443
No 242
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=31.13 E-value=39 Score=24.60 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=32.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHcCCC----eEEEECCCCCCCChhHHHhhCCCC--ceeEEE
Q 026628 140 PIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKK--QFPYMV 195 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL~elgL~----ye~~~v~~~g~~~r~e~l~inp~~--qVPvLv 195 (235)
-+.+|..++|+.|...+..+.+..-. +.+.-+. .+. .+++.+..+.. .+|+++
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd--~~~-~~~~~~~~~i~~~~~P~~~ 73 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVD--ADD-FGRHLEYFGLKEEDLPVIA 73 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEc--hHh-hHHHHHHcCCChhhCCEEE
Confidence 35667778999999888877664322 2322221 111 23466666666 899994
No 243
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=90 Score=29.22 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred CeEEEEcCCCcchHHHH----HHHHHc--CCCeEEEECCCCCCCChhHHHhhCCCCceeEEE-eCCCC------eEeeCH
Q 026628 140 PIEIYEYESCPFCRKVR----EIVAVL--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTG------VSMYES 206 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR----~aL~el--gL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLv-Dpn~G------~~L~ES 206 (235)
.+.-+..++|++|++.. .+..++ +..+++..+... ..............|.++ -++++ ..+.++
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~ 241 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS 241 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhcccCCceEEEecCCCcccccccccccH
Confidence 36666789999999762 222222 233333332111 233455566667777773 22122 256679
Q ss_pred HHHHHHHHhhhCCCCCC
Q 026628 207 DNIIKYLVGKYGDGSVP 223 (235)
Q Consensus 207 ~aIi~YL~~~yg~~~~P 223 (235)
..|+.|+.+..+...++
T Consensus 242 ~~i~~~v~~~~~~~~~~ 258 (383)
T KOG0191|consen 242 DSIVSFVEKKERRNIPE 258 (383)
T ss_pred HHHHHHHHhhcCCCCCC
Confidence 99999999998875333
No 244
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=30.32 E-value=49 Score=26.55 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=31.9
Q ss_pred EEcCCCcchHHHHHHHHHcCCC----eEEEECCCCCCCChhHHHhhCCCCceeEEE
Q 026628 144 YEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (235)
Q Consensus 144 Y~~e~cP~CrkVR~aL~elgL~----ye~~~v~~~g~~~r~e~l~inp~~qVPvLv 195 (235)
|+..||+.|+..-..|.++--. +.++.|+-. .-+++.+...-..+|+.+
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD---ev~dva~~y~I~amPtfv 73 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD---KVPVYTQYFDISYIPSTI 73 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc---ccHHHHHhcCceeCcEEE
Confidence 5668999999987777766432 233333211 235688887777788874
No 245
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=30.23 E-value=39 Score=30.67 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=16.6
Q ss_pred eEEEEcCCCcchHHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAV 161 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~e 161 (235)
+-+-++++||+|-.-||+|..
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ 82 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYI 82 (249)
T ss_pred EEEEecccCccchhhHHHHHH
Confidence 445578999999999987753
No 246
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=29.66 E-value=1.4e+02 Score=24.26 Aligned_cols=20 Identities=10% Similarity=0.635 Sum_probs=13.0
Q ss_pred eEEEEcCCCcchHHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVA 160 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~ 160 (235)
+..|...+||.|......|.
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~ 48 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLN 48 (171)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 44455689999986444443
No 247
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.93 E-value=55 Score=24.36 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHcCCCeEEEE
Q 026628 150 PFCRKVREIVAVLDLDVLYYP 170 (235)
Q Consensus 150 P~CrkVR~aL~elgL~ye~~~ 170 (235)
.||||+...|+..|++|+..+
T Consensus 16 GF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeec
Confidence 699999999999999999977
No 248
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=27.77 E-value=49 Score=22.85 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=14.3
Q ss_pred cCCCcchHHHHHHHHHcC
Q 026628 146 YESCPFCRKVREIVAVLD 163 (235)
Q Consensus 146 ~e~cP~CrkVR~aL~elg 163 (235)
.++||+|+.....+.+..
T Consensus 41 ~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 41 APWCPPCRAEAPLLEELA 58 (127)
T ss_pred cCcCHHHHhhchhHHHHH
Confidence 799999998877776543
No 249
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=27.48 E-value=1.5e+02 Score=24.04 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCC-c-----c--------hHHHHHHHHHcCCCeEEEECCCCCCCC-----hhHHHhhCCCCceeEEEeCC
Q 026628 138 EKPIEIYEYESC-P-----F--------CRKVREIVAVLDLDVLYYPCPRNGPNF-----RPKVLQMGGKKQFPYMVDPN 198 (235)
Q Consensus 138 ~~~ltLY~~e~c-P-----~--------CrkVR~aL~elgL~ye~~~v~~~g~~~-----r~e~l~inp~~qVPvLvDpn 198 (235)
|++|++|+-..| . . --.+-..|+++|++++.++...+...+ -.++++..+...+|+.+.
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV-- 78 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV-- 78 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--
Confidence 567888887653 1 1 112345678899999999963332211 245667788999999966
Q ss_pred CC-eEeeCH----HHHHHHHHh
Q 026628 199 TG-VSMYES----DNIIKYLVG 215 (235)
Q Consensus 199 ~G-~~L~ES----~aIi~YL~~ 215 (235)
+| .+.... .++.+|+.-
T Consensus 79 dGeiv~~G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 79 DGEIVKTGRYPTNEELAEWLGI 100 (123)
T ss_dssp TTEEEEESS---HHHHHHHHT-
T ss_pred CCEEEEecCCCCHHHHHHHhCC
Confidence 45 455553 555666543
No 250
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=27.06 E-value=45 Score=24.31 Aligned_cols=22 Identities=18% Similarity=0.629 Sum_probs=16.6
Q ss_pred CeEEEEcC----CCcchHHHHHHHHH
Q 026628 140 PIEIYEYE----SCPFCRKVREIVAV 161 (235)
Q Consensus 140 ~ltLY~~e----~cP~CrkVR~aL~e 161 (235)
+++||.|- .+.||.+|-.+|++
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 56778773 56799999888764
No 251
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=26.25 E-value=55 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=14.0
Q ss_pred CeEEEEcCCCcchHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREI 158 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~a 158 (235)
-+..++..+|++|++....
T Consensus 26 vmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 26 LMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred EEEEEeCCcCHhHHHHHHH
Confidence 4555777999999976543
No 252
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=25.99 E-value=1.5e+02 Score=29.79 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=13.4
Q ss_pred EEEcCCCcchHHHHHHHHH
Q 026628 143 IYEYESCPFCRKVREIVAV 161 (235)
Q Consensus 143 LY~~e~cP~CrkVR~aL~e 161 (235)
-|.-.||+.|++..-.|.+
T Consensus 62 ~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 62 KFWASWCPLCLSELGETEK 80 (521)
T ss_pred EEEcCCCHHHHHHHHHHHH
Confidence 3445899999987655543
No 253
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=25.59 E-value=3.4e+02 Score=21.60 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=43.6
Q ss_pred CeEEEEc--CCCc---chHHHHHHHHHc--CCCeEEEECCCCCCCChhHHHhhCCCC--ceeEE-EeCCCC--e-Eee--
Q 026628 140 PIEIYEY--ESCP---FCRKVREIVAVL--DLDVLYYPCPRNGPNFRPKVLQMGGKK--QFPYM-VDPNTG--V-SMY-- 204 (235)
Q Consensus 140 ~ltLY~~--e~cP---~CrkVR~aL~el--gL~ye~~~v~~~g~~~r~e~l~inp~~--qVPvL-vDpn~G--~-~L~-- 204 (235)
-|.-|+- +||. .|...-...... .|.+-.++|...++....++.+..+-. .+|+| +-.|++ . ..|
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G 100 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSG 100 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCC
Confidence 4555666 7777 666654444332 244444555333332335677777776 89988 333232 1 233
Q ss_pred ---CHHHHHHHHHhh
Q 026628 205 ---ESDNIIKYLVGK 216 (235)
Q Consensus 205 ---ES~aIi~YL~~~ 216 (235)
...+|+.|+.++
T Consensus 101 ~~r~~~~lv~~v~~~ 115 (116)
T cd03007 101 ADVTVDALQRFLKGN 115 (116)
T ss_pred CcccHHHHHHHHHhc
Confidence 346899998775
No 254
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=25.34 E-value=1.4e+02 Score=23.08 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=28.0
Q ss_pred eEEEEcC--CCcchHHHHHHHHHcC---CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 141 IEIYEYE--SCPFCRKVREIVAVLD---LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 141 ltLY~~e--~cP~CrkVR~aL~elg---L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
+.|+-|. +||.|++-...|.++- -.+.++-+.........++.+..+...+|++.|+
T Consensus 29 vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~ 90 (143)
T cd03014 29 KVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDF 90 (143)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecC
Confidence 4455443 4899997654443221 1333332212222222455555555567877774
No 255
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=24.55 E-value=1.6e+02 Score=24.16 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=27.6
Q ss_pred eEEEEc--CCCcchHHHHHHHHHc--C-CCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 141 IEIYEY--ESCPFCRKVREIVAVL--D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 141 ltLY~~--e~cP~CrkVR~aL~el--g-L~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
+.|+-| .+||.|..-.-.|.++ . -.++++-+....+....+|.+..+...+|+|.|+
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~ 108 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDF 108 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecC
Confidence 344444 3489998644333322 1 1344433322222223456666655457777773
No 256
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=24.05 E-value=67 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=14.9
Q ss_pred CeEEEEcCCCcchHHHHHHH
Q 026628 140 PIEIYEYESCPFCRKVREIV 159 (235)
Q Consensus 140 ~ltLY~~e~cP~CrkVR~aL 159 (235)
-+..++-.+|++|++....+
T Consensus 20 vlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 20 VLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEEETTTTHHHHHHHHHT
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 35667889999999775443
No 257
>PRK09266 hypothetical protein; Provisional
Probab=23.92 E-value=1.3e+02 Score=26.55 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCeEEEECCCCC-CCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHHhhhCCCCC
Q 026628 154 KVREIVAVLDLDVLYYPCPRNG-PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSV 222 (235)
Q Consensus 154 kVR~aL~elgL~ye~~~v~~~g-~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~~~yg~~~~ 222 (235)
.+...++.+|+++++..+...+ .+..+-|+--+-.+-+||... ++..+.+...|.+.|.+.|-..-|
T Consensus 196 ~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~~~~~~~~~l~~~~~~~~~ 263 (266)
T PRK09266 196 LLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALPDSHALLELLRRAYEAEPW 263 (266)
T ss_pred HHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECCCCchHHHHHHHHHHhcCC
Confidence 4555667789999988763222 222334555556788999965 455555456888889888865444
No 258
>PTZ00256 glutathione peroxidase; Provisional
Probab=23.74 E-value=1.8e+02 Score=24.17 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=10.9
Q ss_pred EEEEcCCCcchHHHH
Q 026628 142 EIYEYESCPFCRKVR 156 (235)
Q Consensus 142 tLY~~e~cP~CrkVR 156 (235)
.++...+||+|+.-.
T Consensus 46 v~n~atwCp~C~~e~ 60 (183)
T PTZ00256 46 VVNVACKCGLTSDHY 60 (183)
T ss_pred EEEECCCCCchHHHH
Confidence 345668999999743
No 259
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=23.67 E-value=1.6e+02 Score=23.28 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=26.6
Q ss_pred eEEEEc--CCCcchHHH-------HHHHHHcCCCeEEEECCCCCCCChhHHHhhCCCCceeEEEeC
Q 026628 141 IEIYEY--ESCPFCRKV-------REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (235)
Q Consensus 141 ltLY~~--e~cP~CrkV-------R~aL~elgL~ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDp 197 (235)
+.|+-+ .+||.|..- ...+...|+.+.-+.. .....-.+|.+.++ ..+|+|-|+
T Consensus 33 ~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~--d~~~~~~~~~~~~~-~~~~~l~D~ 95 (154)
T PRK09437 33 VLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIST--DKPEKLSRFAEKEL-LNFTLLSDE 95 (154)
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC--CCHHHHHHHHHHhC-CCCeEEECC
Confidence 444433 479999743 2233344544433332 22222334555554 367887764
No 260
>PTZ00062 glutaredoxin; Provisional
Probab=23.19 E-value=3.4e+02 Score=23.68 Aligned_cols=68 Identities=7% Similarity=0.130 Sum_probs=42.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHcCCC---eEEEECCCCCCCChhHHHhhCCCCceeEEEeCCCCe-----EeeCHHHHHHH
Q 026628 141 IEIYEYESCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV-----SMYESDNIIKY 212 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~elgL~---ye~~~v~~~g~~~r~e~l~inp~~qVPvLvDpn~G~-----~L~ES~aIi~Y 212 (235)
+-.|.-+|||.|+.+..+|.++--+ +.+..+... ..-..||+++-=.+|. .-.+...+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 3334468999999888887766433 444444211 5566899884211443 33457888888
Q ss_pred HHhhhCC
Q 026628 213 LVGKYGD 219 (235)
Q Consensus 213 L~~~yg~ 219 (235)
+.+.++.
T Consensus 90 ~~~~~~~ 96 (204)
T PTZ00062 90 IRGWAQK 96 (204)
T ss_pred HHHHcCC
Confidence 8887764
No 261
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=23.19 E-value=1.5e+02 Score=23.70 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=12.0
Q ss_pred eEEEEcCCCcchHHHHH
Q 026628 141 IEIYEYESCPFCRKVRE 157 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~ 157 (235)
+..+...+||+|.+-.-
T Consensus 26 vv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 26 LVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEeCCCCCchhhhHH
Confidence 44456689999987544
No 262
>PLN02412 probable glutathione peroxidase
Probab=22.67 E-value=2e+02 Score=23.63 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=10.3
Q ss_pred EEEEcCCCcchHHH
Q 026628 142 EIYEYESCPFCRKV 155 (235)
Q Consensus 142 tLY~~e~cP~CrkV 155 (235)
..|...+||+|++-
T Consensus 34 v~f~a~~C~~c~~e 47 (167)
T PLN02412 34 IVNVASKCGLTDSN 47 (167)
T ss_pred EEEeCCCCCChHHH
Confidence 33557899999964
No 263
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=22.06 E-value=1.6e+02 Score=23.98 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=9.4
Q ss_pred cCCCcchHHHHHHH
Q 026628 146 YESCPFCRKVREIV 159 (235)
Q Consensus 146 ~e~cP~CrkVR~aL 159 (235)
..+||.|..-...|
T Consensus 39 ~~~c~~C~~~l~~l 52 (173)
T cd03015 39 LDFTFVCPTEIIAF 52 (173)
T ss_pred CCCCCcCHHHHHHH
Confidence 46899999743333
No 264
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=21.48 E-value=91 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.634 Sum_probs=16.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHc
Q 026628 141 IEIYEYESCPFCRKVREIVAVL 162 (235)
Q Consensus 141 ltLY~~e~cP~CrkVR~aL~el 162 (235)
++||..++|..|=.+-..|.++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l 23 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSEL 23 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHh
Confidence 6899999999999887777765
No 265
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=21.07 E-value=1.6e+02 Score=18.15 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=21.0
Q ss_pred CCCceeEEEeCCCCeEeeCHHHHHHHHHh
Q 026628 187 GKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (235)
Q Consensus 187 p~~qVPvLvDpn~G~~L~ES~aIi~YL~~ 215 (235)
-.+.+|.... ++..++.-.+|.+|+++
T Consensus 23 ~~g~i~~~~~--g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 23 HEGELPAYRV--GRHYRIPREDVDEYLEQ 49 (49)
T ss_pred HcCCCCeEEe--CCeEEEeHHHHHHHHhC
Confidence 4567888766 57889999999999863
No 266
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=20.01 E-value=1.1e+02 Score=21.93 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=35.5
Q ss_pred EEEEcCCCcchHHHHHHHHHc----C--CCeEEEECCCCC-CCChhHHHhhCCCCceeEEEeCCCCeEeeCHHHHHHHHH
Q 026628 142 EIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNG-PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (235)
Q Consensus 142 tLY~~e~cP~CrkVR~aL~el----g--L~ye~~~v~~~g-~~~r~e~l~inp~~qVPvLvDpn~G~~L~ES~aIi~YL~ 214 (235)
..|...+|+.|++....|.++ + -.++++-+.... ...-.++.+.++.. .+.+.. ...-..-|.
T Consensus 6 l~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~l~ 75 (95)
T PF13905_consen 6 LYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFP-WYNVPF---------DDDNNSELL 75 (95)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTS-SEEEET---------TTHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCC-ceEEee---------CcchHHHHH
Confidence 345558999999877766543 2 556665432221 11223444444221 122211 111144567
Q ss_pred hhhCCCCCCcc
Q 026628 215 GKYGDGSVPFM 225 (235)
Q Consensus 215 ~~yg~~~~P~~ 225 (235)
+.|+-..+|.-
T Consensus 76 ~~~~i~~iP~~ 86 (95)
T PF13905_consen 76 KKYGINGIPTL 86 (95)
T ss_dssp HHTT-TSSSEE
T ss_pred HHCCCCcCCEE
Confidence 77776667753
Done!