Query 026633
Match_columns 235
No_of_seqs 140 out of 612
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 5.9E-59 1.3E-63 412.1 11.4 235 1-235 15-249 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 1.7E-56 3.7E-61 401.7 18.7 235 1-235 1-235 (300)
3 PRK02971 4-amino-4-deoxy-L-ara 98.9 1E-08 2.3E-13 81.7 8.4 114 8-121 3-121 (129)
4 COG2510 Predicted membrane pro 98.8 3.7E-08 7.9E-13 77.9 10.1 112 10-121 6-138 (140)
5 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.1E-07 8.9E-12 70.6 9.6 99 13-120 7-107 (111)
6 PF13536 EmrE: Multidrug resis 98.6 2.2E-07 4.8E-12 71.7 7.6 69 56-125 41-109 (113)
7 PF10639 UPF0546: Uncharacteri 98.5 1.3E-07 2.8E-12 73.7 5.3 98 23-120 12-112 (113)
8 TIGR03340 phn_DUF6 phosphonate 98.4 1.6E-05 3.5E-10 70.4 16.9 113 9-121 3-134 (281)
9 PRK10532 threonine and homoser 98.1 1.2E-05 2.6E-10 71.8 8.8 123 6-128 147-287 (293)
10 PRK10452 multidrug efflux syst 97.9 0.00017 3.7E-09 56.8 10.5 75 53-127 33-108 (120)
11 TIGR00950 2A78 Carboxylate/Ami 97.9 0.00059 1.3E-08 59.0 14.9 69 54-122 51-119 (260)
12 PLN00411 nodulin MtN21 family 97.8 9.4E-05 2E-09 68.4 9.2 123 5-127 187-333 (358)
13 TIGR00950 2A78 Carboxylate/Ami 97.8 0.0002 4.3E-09 61.9 10.6 114 4-117 125-259 (260)
14 PF06027 DUF914: Eukaryotic pr 97.7 0.00018 3.9E-09 66.0 9.5 78 47-124 74-153 (334)
15 PF00892 EamA: EamA-like trans 97.7 3E-05 6.4E-10 58.9 3.4 67 54-120 58-124 (126)
16 PRK15430 putative chlorampheni 97.7 8.6E-05 1.9E-09 66.3 6.9 119 2-121 3-144 (296)
17 PRK11453 O-acetylserine/cystei 97.7 0.0012 2.6E-08 59.0 13.8 112 10-121 7-131 (299)
18 PRK09541 emrE multidrug efflux 97.7 0.00042 9.2E-09 53.7 9.5 76 50-125 29-106 (110)
19 TIGR03340 phn_DUF6 phosphonate 97.7 0.00014 3E-09 64.4 7.5 113 7-119 144-280 (281)
20 PRK11272 putative DMT superfam 97.7 0.0003 6.6E-09 62.6 9.6 116 5-120 148-283 (292)
21 PRK11689 aromatic amino acid e 97.7 0.00027 5.8E-09 63.1 9.1 115 6-120 155-285 (295)
22 PRK11453 O-acetylserine/cystei 97.5 0.0011 2.3E-08 59.3 10.4 115 6-120 142-285 (299)
23 TIGR00776 RhaT RhaT L-rhamnose 97.5 0.0022 4.7E-08 57.4 12.3 75 50-124 56-138 (290)
24 PF04142 Nuc_sug_transp: Nucle 97.3 0.00094 2E-08 58.6 8.1 70 58-127 25-94 (244)
25 PRK11689 aromatic amino acid e 97.3 0.045 9.9E-07 48.8 18.8 63 60-122 71-137 (295)
26 COG0697 RhaT Permeases of the 97.2 0.0069 1.5E-07 52.3 12.1 70 58-127 78-148 (292)
27 TIGR00688 rarD rarD protein. T 97.1 0.0036 7.7E-08 54.4 9.0 62 60-121 80-141 (256)
28 PRK11272 putative DMT superfam 97.1 0.011 2.3E-07 52.7 12.2 65 56-121 75-140 (292)
29 PF00893 Multi_Drug_Res: Small 97.0 0.0046 1E-07 46.2 8.2 65 49-113 27-93 (93)
30 TIGR00817 tpt Tpt phosphate/ph 97.0 0.0031 6.7E-08 56.2 8.0 65 55-120 71-135 (302)
31 PF08449 UAA: UAA transporter 97.0 0.055 1.2E-06 48.4 16.1 76 53-129 68-143 (303)
32 COG0697 RhaT Permeases of the 96.9 0.0049 1.1E-07 53.2 8.7 115 6-121 153-286 (292)
33 PRK10650 multidrug efflux syst 96.7 0.032 7E-07 43.2 10.6 73 48-120 32-106 (109)
34 PRK11431 multidrug efflux syst 96.7 0.0072 1.6E-07 46.5 6.9 72 49-120 27-100 (105)
35 PTZ00343 triose or hexose phos 96.6 0.009 2E-07 54.9 8.0 69 52-121 117-185 (350)
36 KOG4510 Permease of the drug/m 96.5 0.023 5E-07 50.8 9.5 113 7-121 38-168 (346)
37 PF06800 Sugar_transport: Suga 96.5 0.087 1.9E-06 47.0 13.2 79 51-129 43-129 (269)
38 PRK10532 threonine and homoser 96.4 0.22 4.7E-06 44.4 15.8 112 4-122 9-137 (293)
39 PF06027 DUF914: Eukaryotic pr 96.3 0.048 1E-06 50.2 10.9 126 3-129 164-312 (334)
40 COG2076 EmrE Membrane transpor 96.3 0.013 2.8E-07 45.1 6.1 72 49-120 28-101 (106)
41 PRK15430 putative chlorampheni 96.2 0.0055 1.2E-07 54.7 4.4 62 62-123 225-286 (296)
42 KOG2765 Predicted membrane pro 95.9 0.016 3.4E-07 53.8 5.8 83 68-150 177-264 (416)
43 KOG3912 Predicted integral mem 95.7 0.31 6.6E-06 44.1 12.7 72 52-123 88-159 (372)
44 TIGR00776 RhaT RhaT L-rhamnose 95.6 0.024 5.3E-07 50.6 5.6 113 6-121 151-287 (290)
45 PF03151 TPT: Triose-phosphate 95.4 0.12 2.5E-06 40.9 8.5 56 64-119 95-150 (153)
46 PRK13499 rhamnose-proton sympo 95.4 0.1 2.3E-06 48.1 9.1 121 1-125 1-156 (345)
47 PLN00411 nodulin MtN21 family 95.3 0.034 7.4E-07 51.5 5.8 60 63-122 91-156 (358)
48 TIGR00803 nst UDP-galactose tr 93.7 0.36 7.8E-06 41.0 8.0 115 4-118 82-220 (222)
49 KOG2234 Predicted UDP-galactos 93.2 0.29 6.3E-06 45.1 6.8 74 56-129 98-171 (345)
50 COG1742 Uncharacterized conser 92.2 0.88 1.9E-05 34.9 7.2 48 78-126 60-107 (109)
51 COG5006 rhtA Threonine/homoser 92.2 0.4 8.6E-06 42.6 6.1 120 5-124 146-284 (292)
52 TIGR00817 tpt Tpt phosphate/ph 91.5 0.18 3.9E-06 44.9 3.3 117 4-120 142-291 (302)
53 COG2962 RarD Predicted permeas 91.2 0.31 6.8E-06 43.9 4.5 78 45-122 63-144 (293)
54 KOG4831 Unnamed protein [Funct 90.7 0.32 6.8E-06 37.6 3.5 78 43-121 45-124 (125)
55 PRK02237 hypothetical protein; 89.4 1.8 3.8E-05 33.5 6.6 47 79-126 62-108 (109)
56 PF06800 Sugar_transport: Suga 89.2 0.88 1.9E-05 40.7 5.6 61 59-119 204-268 (269)
57 PF02694 UPF0060: Uncharacteri 86.0 1 2.2E-05 34.7 3.5 45 80-125 61-105 (107)
58 KOG2766 Predicted membrane pro 82.4 0.56 1.2E-05 41.9 0.8 60 68-127 96-155 (336)
59 PTZ00343 triose or hexose phos 79.9 4.1 8.9E-05 37.4 5.7 50 70-119 296-345 (350)
60 PF04142 Nuc_sug_transp: Nucle 76.7 23 0.00051 30.9 9.3 109 4-112 111-243 (244)
61 COG3169 Uncharacterized protei 76.7 2.8 6.1E-05 32.0 2.9 105 2-119 5-112 (116)
62 PF08449 UAA: UAA transporter 74.6 15 0.00033 32.7 7.7 114 6-119 153-294 (303)
63 KOG1583 UDP-N-acetylglucosamin 73.5 6.3 0.00014 35.7 4.8 79 51-129 65-144 (330)
64 PF04342 DUF486: Protein of un 73.0 3.6 7.7E-05 31.7 2.7 35 85-119 71-105 (108)
65 PRK13499 rhamnose-proton sympo 68.4 15 0.00032 34.1 6.2 39 84-123 298-342 (345)
66 PF04657 DUF606: Protein of un 60.1 83 0.0018 25.0 8.5 34 86-119 101-138 (138)
67 KOG4314 Predicted carbohydrate 58.3 23 0.0005 30.7 5.1 60 66-125 69-128 (290)
68 PF05653 Mg_trans_NIPA: Magnes 55.9 49 0.0011 29.9 7.2 80 47-126 206-296 (300)
69 KOG1441 Glucose-6-phosphate/ph 54.3 18 0.0004 33.1 4.2 62 60-121 93-154 (316)
70 KOG2765 Predicted membrane pro 53.9 95 0.0021 29.4 8.7 122 4-125 244-393 (416)
71 KOG1581 UDP-galactose transpor 52.4 1.5E+02 0.0032 27.3 9.5 68 60-127 93-160 (327)
72 COG4975 GlcU Putative glucose 43.1 5.8 0.00013 35.3 -0.9 60 63-122 222-285 (288)
73 KOG1442 GDP-fucose transporter 38.6 15 0.00033 33.3 1.1 57 62-118 114-170 (347)
74 PF12263 DUF3611: Protein of u 38.2 2.1E+02 0.0045 24.1 7.8 42 55-96 113-168 (183)
75 COG4975 GlcU Putative glucose 37.9 33 0.00072 30.6 3.0 91 47-137 53-151 (288)
76 PF10361 DUF2434: Protein of u 37.3 1E+02 0.0022 28.0 6.1 61 6-71 48-109 (296)
77 PRK11469 hypothetical protein; 36.9 2.5E+02 0.0055 23.5 9.4 14 106-119 167-181 (188)
78 PF03605 DcuA_DcuB: Anaerobic 36.7 59 0.0013 30.4 4.6 74 77-152 167-267 (364)
79 KOG1580 UDP-galactose transpor 35.9 43 0.00094 29.8 3.4 39 87-125 278-316 (337)
80 PF15196 Harakiri: Activator o 35.7 72 0.0016 23.1 3.9 46 12-57 31-76 (92)
81 COG4858 Uncharacterized membra 34.1 3E+02 0.0066 23.6 9.0 57 49-105 157-219 (226)
82 PF12273 RCR: Chitin synthesis 33.1 23 0.0005 27.7 1.2 24 143-166 2-25 (130)
83 PF05106 Phage_holin_3: Phage 33.0 56 0.0012 24.7 3.3 55 130-185 5-59 (100)
84 PF06157 DUF973: Protein of un 33.0 3.7E+02 0.008 24.2 10.3 108 6-117 46-159 (285)
85 PF04211 MtrC: Tetrahydrometha 30.9 3.9E+02 0.0085 23.9 13.4 131 55-186 75-216 (262)
86 PF04531 Phage_holin_1: Bacter 30.8 1.2E+02 0.0025 22.2 4.6 23 46-68 6-28 (84)
87 TIGR01148 mtrC N5-methyltetrah 29.6 4.1E+02 0.0089 23.7 10.8 134 55-191 75-220 (265)
88 PF01788 PsbJ: PsbJ; InterPro 29.6 85 0.0018 19.9 3.0 18 49-66 7-26 (40)
89 COG1008 NuoM NADH:ubiquinone o 22.4 4.2E+02 0.0092 25.9 7.8 79 14-100 339-429 (497)
90 COG5522 Predicted integral mem 22.4 3.5E+02 0.0075 23.6 6.4 93 49-145 90-202 (236)
91 PRK01030 tetrahydromethanopter 22.2 5.7E+02 0.012 22.9 10.6 129 55-186 68-209 (264)
92 TIGR03042 PS_II_psbQ_bact phot 21.2 69 0.0015 26.0 1.9 35 105-139 2-38 (142)
93 PF08019 DUF1705: Domain of un 21.2 2.4E+02 0.0053 22.5 5.2 69 130-199 54-128 (156)
94 KOG1583 UDP-N-acetylglucosamin 21.0 36 0.00079 30.9 0.3 39 88-126 280-320 (330)
95 TIGR00688 rarD rarD protein. T 20.9 2.1E+02 0.0046 24.3 5.2 38 60-97 218-255 (256)
96 KOG1444 Nucleotide-sugar trans 20.3 5.5E+02 0.012 23.6 7.7 70 51-120 78-147 (314)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.9e-59 Score=412.11 Aligned_cols=235 Identities=67% Similarity=1.134 Sum_probs=229.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 026633 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (235)
Q Consensus 1 ~~~~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~ 80 (235)
|++|+++|+.+|+.||++++.++++|||+++|....+.|+++++.+|++.|.||+|++.|++|+++||+||+|||+++|+
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVt 94 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVT 94 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhc
Confidence 78999999999999999999999999999998887778888888999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHh
Q 026633 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (235)
Q Consensus 81 Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~ 160 (235)
|||+++++.|+++|++++||+++..+.+||++|++|.+++|.++|++++..|++|+++++++|+|++|+.+.+++.++++
T Consensus 95 PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~ 174 (335)
T KOG2922|consen 95 PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILI 174 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988998
Q ss_pred heeeeccCccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 026633 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMGKS 235 (235)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~g~~~~~~~~~y~~~~~~~~~~~~Q~~~LN~aL~ 235 (235)
++..||+|++|+++|+.+|+.+|++||+++|+++++++++++|++|+.+|.+|+++.+++.|+.+|++|||||||
T Consensus 175 ~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~ 249 (335)
T KOG2922|consen 175 FFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALD 249 (335)
T ss_pred eeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=1.7e-56 Score=401.73 Aligned_cols=235 Identities=48% Similarity=0.814 Sum_probs=223.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 026633 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVT 80 (235)
Q Consensus 1 ~~~~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~ 80 (235)
|=+|+++|+.+|++||++++.|+++|||+++|+++++.|++++.++|+|||+||.|+.++++|+++|++||+|+|+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 45789999999999999999999999999999887655554456789999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHHHh
Q 026633 81 PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVAVALVLI 160 (235)
Q Consensus 81 Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~ 160 (235)
|++++++++|++++++++|||++++|+.|+++++.|+++++.++|++++.+|+||+.+++++|+|+.|+.+..++.+.++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred heeeeccCccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 026633 161 LYCAPRYGQTNILIYIGICSVIGSLTVMSVKAIGIAIKLTLEGLNQAKCIETWIFAMVALTCVITQLNYLNMGKS 235 (235)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~g~~~~~~~~~y~~~~~~~~~~~~Q~~~LN~aL~ 235 (235)
++..||+|++++++|.++|+++|++|++++|+++++++++++|+|||.||.+|+++++++.|++.|++|||||||
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~ 235 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALK 235 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.87 E-value=1e-08 Score=81.67 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCC-CCcccccch--hHHHHHHHHHHHHHHHHHHHhhccchhhhchhh
Q 026633 8 GFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGS-GGYGYLLEP--LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGA 84 (235)
Q Consensus 8 gv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~-~~~~~~~~~--~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~ 84 (235)
|.++.+.+.++.+.|..+-|++.++.++.+..... .......+| .-+.|+..++++...+..++...|++...|+-+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~s 82 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLS 82 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 56777888889999999999998877643211100 001234567 677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--HhccccccchhhHHHHHhhhheeeE
Q 026633 85 LSIIVSAVLAHF--MLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 85 ~~lv~~~~~a~~--~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
...++..+.+.. ++||++|.+++.|++++++|++++.
T Consensus 83 l~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 83 LSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 988888888885 7999999999999999999988764
No 4
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.83 E-value=3.7e-08 Score=77.95 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccCC---CCC--------------CC-CCcccccchhHHHHH---HHHHHHHHHHH
Q 026633 10 ILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--------------GS-GGYGYLLEPLWWVGM---FTMIVGEIANF 68 (235)
Q Consensus 10 ~lav~sa~~~a~g~vlqk~~~~~~~~~~---~~~--------------~~-~~~~~~~~~~W~~G~---~~~~~g~~~~~ 68 (235)
..|+.||++.++..++-|-+.+..+.+- -|. |. +...-...+.|..=. +.-.++..+.|
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf 85 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHH
Confidence 5677888888888888888766433210 000 00 001112233343222 33457788999
Q ss_pred HHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 69 ~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
.|+.-+++|.|.|+...++++..+++..++|||++..+|+|+.++++|++++.
T Consensus 86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999988764
No 5
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.60 E-value=4.1e-07 Score=70.57 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHH--HHHHHHHHHHHHHHhhccchhhhchhhHHHHHH
Q 026633 13 VVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM--FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVS 90 (235)
Q Consensus 13 v~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~--~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~ 90 (235)
+.+.++-..|....|++.+..+.. + ...++..+.+. ..+.++..+...++...|++...|+.+++.+++
T Consensus 7 ~~ai~~ev~g~~~lK~s~~~~~~~--------~-~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~ 77 (111)
T PRK15051 7 VFASLLSVAGQLCQKQATRPVAIG--------K-RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWV 77 (111)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc--------h-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 445556677888888874333211 0 11123445555 456778889999999999999999999999999
Q ss_pred HHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 91 AVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 91 ~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
.+.+.+++|||++.+++.|..+++.|++++
T Consensus 78 ~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 78 TLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
No 6
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.58 E-value=2.2e-07 Score=71.70 Aligned_cols=69 Identities=30% Similarity=0.447 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecC
Q 026633 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
|......+..+.+.|+.++| ..+.|+.+.+.+++.+++..++|||+++++|.|+.++.+|++++.....
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 33444577899999999999 6999999999999999999999999999999999999999887755443
No 7
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.54 E-value=1.3e-07 Score=73.66 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=77.9
Q ss_pred HHHhHhhhhhhccCCCC--CCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhchh-hHHHHHHHHHHHHHhc
Q 026633 23 FIIKKKGLRKAGANGAR--AGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLN 99 (235)
Q Consensus 23 ~vlqk~~~~~~~~~~~~--~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~ 99 (235)
.-+.||+.+..++.+.+ .-++....++||..+.++++...|++..+..++-+|.|+..|+. +++.+++.+.+.++-+
T Consensus 12 npfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge 91 (113)
T PF10639_consen 12 NPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGE 91 (113)
T ss_pred hHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcC
Confidence 34667765444432111 11133458899999999999999999999999999999999996 9999999999977666
Q ss_pred cccccchhhHHHHHhhhheee
Q 026633 100 EKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 100 e~~~~~~~~g~~l~~~G~~~~ 120 (235)
|..+++.+.|+.+++.|+.+.
T Consensus 92 ~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 92 EVISRRTWLGMALILAGVALC 112 (113)
T ss_pred cccchhHHHHHHHHHcCeeee
Confidence 666778899999999998765
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.44 E-value=1.6e-05 Score=70.40 Aligned_cols=113 Identities=23% Similarity=0.243 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhccC-CCCC--C-------------CCCcccccchhHHH---HHHHHHHHHHHHHH
Q 026633 9 FILAVVSSAFIGSSFIIKKKGLRKAGAN-GARA--G-------------SGGYGYLLEPLWWV---GMFTMIVGEIANFV 69 (235)
Q Consensus 9 v~lav~sa~~~a~g~vlqk~~~~~~~~~-~~~~--~-------------~~~~~~~~~~~W~~---G~~~~~~g~~~~~~ 69 (235)
..+.+.++++.|....+.||..++++.- .... . ....+..++..|+. +......+..+...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999765443320 0000 0 00011112222212 22234455678888
Q ss_pred HHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 70 al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
++...|.+..+|+...+.++..+++..++|||+++++|.|..++..|+.++.
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988664
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.12 E-value=1.2e-05 Score=71.75 Aligned_cols=123 Identities=16% Similarity=0.099 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC-CC---C----------CCCcccccch----hHHHHHHHHHHHHHHH
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA-RA---G----------SGGYGYLLEP----LWWVGMFTMIVGEIAN 67 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~-~~---~----------~~~~~~~~~~----~W~~G~~~~~~g~~~~ 67 (235)
.+|.++++.++++.+...++.||..++.+.... .. + .+........ .++.|+...+++..++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999988775333221000 00 0 0000011111 2355666667788888
Q ss_pred HHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCcc
Q 026633 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEE 128 (235)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~ 128 (235)
..++...|.+.++++..+..+++.+++.+++||+++..++.|.++++.|+.......++++
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999877655555433
No 10
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.90 E-value=0.00017 Score=56.80 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCc
Q 026633 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (235)
Q Consensus 53 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~ 127 (235)
|+..+.++.++..+-..++...|.++.-|+ .+++.+...+.+.++.||+++..++.|+.+++.|++.+-..+++.
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 455566777888888999999999999999 579999999999999999999999999999999998775555433
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.90 E-value=0.00059 Score=58.95 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEe
Q 026633 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (235)
Q Consensus 54 ~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~ 122 (235)
..|.....++..+.+.|+.+.|.+..+++.....+++.+++..++|||++++++.|+.+.++|+.++..
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 344455667788899999999999999999999999999999999999999999999999999887653
No 12
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.83 E-value=9.4e-05 Score=68.40 Aligned_cols=123 Identities=19% Similarity=0.232 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC-------------------CCCCcccccc-hhHHHHHHHH----
Q 026633 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------------------GSGGYGYLLE-PLWWVGMFTM---- 60 (235)
Q Consensus 5 ~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~W~~G~~~~---- 60 (235)
..+|.++++.|+++.|.+.++||+..++.+...... +.+....... ..+...++..
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 467999999999999999999998655432210000 0000000000 1111122211
Q ss_pred HHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCc
Q 026633 61 IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (235)
Q Consensus 61 ~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~ 127 (235)
.+++.++..+....+++.++...-+.-+++.+++..++||+++..+++|+++++.|+.+......+|
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2355667778888999999999999999999999999999999999999999999988765544333
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.82 E-value=0.0002 Score=61.93 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC---CC--C------------CCCCcccccchhHH----HHHHHHHH
Q 026633 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---AR--A------------GSGGYGYLLEPLWW----VGMFTMIV 62 (235)
Q Consensus 4 ~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~---~~--~------------~~~~~~~~~~~~W~----~G~~~~~~ 62 (235)
+...|..+++.++++.+...+.+||..++.+.+. .+ . ..+.......+.|+ .|....+.
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999998654333100 00 0 00001111222332 23333456
Q ss_pred HHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhh
Q 026633 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGS 117 (235)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~ 117 (235)
+..+++.++...|++.+..+.....+++.+++.+++||+++..++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999999999886
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.74 E-value=0.00018 Score=65.97 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=66.8
Q ss_pred cccchhHHHHHH--HHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeec
Q 026633 47 YLLEPLWWVGMF--TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (235)
Q Consensus 47 ~~~~~~W~~G~~--~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~ 124 (235)
.+++|.|.-=+. +++.++-....||.+.+.+-+|=|.+.+++|+++++.+++|||.++.++.|+.+|+.|+++++...
T Consensus 74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 355555544433 456788888999999999999999999999999999999999999999999999999988776664
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.72 E-value=3e-05 Score=58.87 Aligned_cols=67 Identities=25% Similarity=0.465 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 54 WVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 54 ~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
..|......+..+...++...|.+.++++...+.+++.+++..++||+++++++.|+.+++.|++++
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444445678889999999999999999999999999999999999999999999999999998754
No 16
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.71 E-value=8.6e-05 Score=66.34 Aligned_cols=119 Identities=16% Similarity=0.065 Sum_probs=87.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC---CCC--------------CC--CCcccccchhHH----HHHH
Q 026633 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--------------GS--GGYGYLLEPLWW----VGMF 58 (235)
Q Consensus 2 ~~~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~---~~~--------------~~--~~~~~~~~~~W~----~G~~ 58 (235)
|+++..|.++.+.++++.+.....-|.. .+.+..+ .|. ++ ..++..+++.++ .|..
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 6788889999999999888888777653 2211100 010 00 000011123322 4445
Q ss_pred HHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 59 ~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
....+..+.+.++...|.+...-+....-++..+++..++|||+++++|.|.++..+|++++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999988754
No 17
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.69 E-value=0.0012 Score=59.02 Aligned_cols=112 Identities=23% Similarity=0.304 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccC---CCCCC--C-CCcccc---cch---hHHHHHHHHHHHHHHHHHHHhh-ccc
Q 026633 10 ILAVVSSAFIGSSFIIKKKGLRKAGAN---GARAG--S-GGYGYL---LEP---LWWVGMFTMIVGEIANFVAYIY-APA 76 (235)
Q Consensus 10 ~lav~sa~~~a~g~vlqk~~~~~~~~~---~~~~~--~-~~~~~~---~~~---~W~~G~~~~~~g~~~~~~al~~-ap~ 76 (235)
.+++.++++-+......|....+.+.. ..|.. . ...... |++ .-..|+........+.+.++.. .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 446667777777787877765433321 01210 0 000001 111 1111222222233455666666 377
Q ss_pred hhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 77 VLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 77 slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
+..+-+.....++..+++++++|||++++++.|+++..+|+.++.
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 777778888889999999999999999999999999999987765
No 18
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.69 E-value=0.00042 Score=53.74 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=63.6
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHhhccchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecC
Q 026633 50 EPLWWVG-MFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 50 ~~~W~~G-~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
+|.|... +..++++..+-..|+..-|.++.-|. .+++.+.+.+.+.++.||+++..++.|..+++.|++.+-..++
T Consensus 29 ~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 29 RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555444 44566777777888889999999999 7799999999999999999999999999999999988755444
No 19
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.67 E-value=0.00014 Score=64.40 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC----C-----C-----------CCCcccccchhHH----HHHHHHHH
Q 026633 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGANGAR----A-----G-----------SGGYGYLLEPLWW----VGMFTMIV 62 (235)
Q Consensus 7 igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~----~-----~-----------~~~~~~~~~~~W~----~G~~~~~~ 62 (235)
-|..+++.++++.+.+.++.|+...+.+....- . . .+.......+.|+ .+.....+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 466788889999999888877653222210000 0 0 0000000111222 22233456
Q ss_pred HHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhee
Q 026633 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
+..+++.++...|++.+.|+.-++.+++.+++.+++||+++..++.|.++++.|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 777888999999999999999999999999999999999999999999999999764
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.67 E-value=0.0003 Score=62.62 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC----------------CCCCCCCcccccchhHH----HHHHHHHHHH
Q 026633 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG----------------ARAGSGGYGYLLEPLWW----VGMFTMIVGE 64 (235)
Q Consensus 5 ~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~----------------~~~~~~~~~~~~~~~W~----~G~~~~~~g~ 64 (235)
...|.++++.++++.|.+.+.+||..++.+... ...+.+.........|+ .|....+++.
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999888532211100 00000000001112332 2333345667
Q ss_pred HHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 65 IANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 65 ~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
.++..++...|.+.+..+..++.+++.+++.+++||+++..++.|+++++.|+.+.
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999998765
No 21
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.66 E-value=0.00027 Score=63.13 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC--C----------CCCcccccch-hHHHHH---HHHHHHHHHHHH
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--G----------SGGYGYLLEP-LWWVGM---FTMIVGEIANFV 69 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~--~----------~~~~~~~~~~-~W~~G~---~~~~~g~~~~~~ 69 (235)
..|..+++.++++.|.+.++.||-.++.+...... . .+....--++ .|.... ...++++.++..
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~ 234 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNV 234 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999998533222100000 0 0000011112 222211 123456778899
Q ss_pred HHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 70 al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
++...|++.++++..+..+++.+++..++||+++..+++|.++++.|+.+.
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999997654
No 22
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.47 E-value=0.0011 Score=59.29 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC---C----------------CCCc---c--cccchhHHHH-----
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA---G----------------SGGY---G--YLLEPLWWVG----- 56 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~---~----------------~~~~---~--~~~~~~W~~G----- 56 (235)
..|.++++.++++.+...+++||..++.+...... . +... . .-.++..|..
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 47999999999999999999998533221100000 0 0000 0 0012222322
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 57 MFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 57 ~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
+...++++.+++.++.-.+..-+.++..+..+++.+++.+++||+++..++.|.+++++|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 2334456667777777788899999999999999999999999999999999999999998754
No 23
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.46 E-value=0.0022 Score=57.42 Aligned_cols=75 Identities=15% Similarity=0.365 Sum_probs=67.1
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhccchhhhchhh-HHHHHHHHHHHHHhccccccch----hhHHHHHhhhheeeE
Q 026633 50 EPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLGA-LSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGSTMIV 121 (235)
Q Consensus 50 ~~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~----~~g~~l~~~G~~~~v 121 (235)
...|..|+.. ...|++..+.|.....++.-.|+.. ...+++.+.+.+++||+.++++ +.|.+++++|++++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 4566668876 8889999999999999999999999 9999999999999999999999 899999999988875
Q ss_pred eec
Q 026633 122 LHA 124 (235)
Q Consensus 122 ~~~ 124 (235)
...
T Consensus 136 ~~~ 138 (290)
T TIGR00776 136 RSK 138 (290)
T ss_pred ecc
Confidence 554
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.33 E-value=0.00094 Score=58.61 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCc
Q 026633 58 FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (235)
Q Consensus 58 ~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~ 127 (235)
.++.+.+.+.+.++...|++.-|=+...-++++++++.+++|+|+++++|.+..+..+|++++-..+..+
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 5788999999999999999999999999999999999999999999999999999999988876665443
No 25
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.30 E-value=0.045 Score=48.76 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhc----cchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEe
Q 026633 60 MIVGEIANFVAYIYA----PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (235)
Q Consensus 60 ~~~g~~~~~~al~~a----p~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~ 122 (235)
+.....+.+.++.++ |.+...-+....-++..++++.++|||+++++|.|+++..+|+.++..
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 334445555666543 445555667788899999999999999999999999999999887664
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.20 E-value=0.0069 Score=52.26 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHH-HHhccccccchhhHHHHHhhhheeeEeecCCc
Q 026633 58 FTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAH-FMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (235)
Q Consensus 58 ~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~-~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~ 127 (235)
.....+..+.+.++...|.+..+++...+.++..+++. +++|||+++++|.|..+...|+.++...+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 34556778999999999999999999999999999997 77799999999999999999988776655543
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.07 E-value=0.0036 Score=54.44 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
+..+..+.+.|+...|.+-.+-+...+-++..+++++++|||+++++|.|..+..+|++++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999987654
No 28
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.06 E-value=0.011 Score=52.67 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHH-hhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 56 GMFTMIVGEIANFVAY-IYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 56 G~~~~~~g~~~~~~al-~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
|......+..+.+.+. ...|....+-+....-++..+++.+ +|||+++++|.|..+..+|+.++.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 75 GLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 4443444556666676 7888888888899999999999975 699999999999999999987653
No 29
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.04 E-value=0.0046 Score=46.22 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=36.5
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhccchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHH
Q 026633 49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLC 113 (235)
Q Consensus 49 ~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~ 113 (235)
+++.|..+.. .+.++..+-..|+...|.++.=|+ .+++.+...+.+.++.||++|..++.|+.++
T Consensus 27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3455555554 567777888889999999999997 5699999999999999999999999999875
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.99 E-value=0.0031 Score=56.24 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 55 VGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
.|+. ..++..++..++.+.+.+..+=+-+...+++.+++++++|||++++++.|..+.+.|+.+.
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 4444 4567789999999999999999999999999999999999999999999999999998753
No 31
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.98 E-value=0.055 Score=48.44 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccC
Q 026633 53 WWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (235)
Q Consensus 53 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~ 129 (235)
+..+ .++.++..++-.|+.+.|.+.-+=+-+..++++++++..++|+|.+++++.+++++++|+.+......++++
T Consensus 68 ~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 68 AILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 3344 445577788889999999999999999999999999999999999999999999999999988777655444
No 32
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.93 E-value=0.0049 Score=53.17 Aligned_cols=115 Identities=24% Similarity=0.231 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-CC------C--------CCCCc--ccccchhHHHH--HHHHHHHHHH
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-AR------A--------GSGGY--GYLLEPLWWVG--MFTMIVGEIA 66 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~-~~------~--------~~~~~--~~~~~~~W~~G--~~~~~~g~~~ 66 (235)
..|..+++.++++.+...+.+|+.. +.+... .. . ..+.. ...+...+... +....++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998744 211100 00 0 00000 11111222222 2223346778
Q ss_pred HHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
.+.++...|...++|+.....+++..++..+++|+++.+++.|+.+++.|+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999977643
No 33
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.70 E-value=0.032 Score=43.20 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=56.3
Q ss_pred ccchhHHHHHHH-HHHHHHHHHHHHhhccchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 48 LLEPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 48 ~~~~~W~~G~~~-~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
+++|.|...+.. +.++..+--.|+..-|..+.=|. .+++.+...+.+.++.||+++..++.|..+++.|++.+
T Consensus 32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 345666555543 44555555666777788877766 45888899999999999999999999999999998754
No 34
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.69 E-value=0.0072 Score=46.49 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=55.9
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhccchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 49 LEPLWWVGMF-TMIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 49 ~~~~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
+++.|+..+. .+..+..+-..|+..-|.++.=++ .+++.+.+.+.+.++.||+++..++.|+.+++.|++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3556555543 355555566666777788877665 44889999999999999999999999999999998865
No 35
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.57 E-value=0.009 Score=54.89 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 52 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 52 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
....|+.-. .+..+...++.+.+++..+=+-+.+-+++++++++++|||.+++.+.++++++.|+.+..
T Consensus 117 llp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 117 FLPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 334444333 235556799999999999999999999999999999999999999999999999988765
No 36
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.48 E-value=0.023 Score=50.79 Aligned_cols=113 Identities=24% Similarity=0.420 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccC-C-CCC-CC-----CCcccccch--------hH--HHHHHHHHHHHHHHH
Q 026633 7 IGFILAVVSSAFIGSSFIIKKKGLRKAGAN-G-ARA-GS-----GGYGYLLEP--------LW--WVGMFTMIVGEIANF 68 (235)
Q Consensus 7 igv~lav~sa~~~a~g~vlqk~~~~~~~~~-~-~~~-~~-----~~~~~~~~~--------~W--~~G~~~~~~g~~~~~ 68 (235)
+|..+..+| .+.+...++-++.....+++ + .|- .. .-.-|.|.| .| +-|.... .|..+.+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvmlmy 115 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVMLMY 115 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHHHH
Confidence 567777888 77777777766654333321 1 110 00 000122222 12 2233222 3444556
Q ss_pred HHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 69 VAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 69 ~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
.||.+.|.+=-.=+.-.+-+++.++|..+||||.|+.|.+|+.+...|+++++
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 66665555444445567788999999999999999999999999999999875
No 37
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.46 E-value=0.087 Score=47.03 Aligned_cols=79 Identities=13% Similarity=0.289 Sum_probs=67.0
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHhhccchhhhchh-hHHHHHHHHHHHHHhccccccchh----hHHHHHhhhheeeEe
Q 026633 51 PLWWVGMF---TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL 122 (235)
Q Consensus 51 ~~W~~G~~---~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~----~g~~l~~~G~~~~v~ 122 (235)
..|+.+++ .-.+|.++|+.++.....|.-.|++ +..++.|.+.+.+++||--+..++ .+.+++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 56777775 3468999999999999999999998 899999999999999998888775 488999999987766
Q ss_pred ecCCccC
Q 026633 123 HAPLEES 129 (235)
Q Consensus 123 ~~~~~~~ 129 (235)
..+++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 6655553
No 38
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.44 E-value=0.22 Score=44.36 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC---CCC--CC--------CCcccccchhH----HHHHHHHHHHHHH
Q 026633 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANG---ARA--GS--------GGYGYLLEPLW----WVGMFTMIVGEIA 66 (235)
Q Consensus 4 ~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~---~~~--~~--------~~~~~~~~~~W----~~G~~~~~~g~~~ 66 (235)
|..-|+.+.+.+.++.+.+.+.-|....+.+... .|. +. ..+...+++.| +.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 4567889999999999999999887655433210 110 00 00111222233 44543 4455667
Q ss_pred HHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEe
Q 026633 67 NFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVL 122 (235)
Q Consensus 67 ~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~ 122 (235)
.+.++...|.+...-+....-++..+++ +||.+ ++.+..+..+|+.+++.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence 7888888888887666666666666655 35543 45667778889877653
No 39
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.29 E-value=0.048 Score=50.16 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC--CCC-------------CCCcccccchhHHHHHH-HHHHHHHH
Q 026633 3 SSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGA--RAG-------------SGGYGYLLEPLWWVGMF-TMIVGEIA 66 (235)
Q Consensus 3 ~~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~--~~~-------------~~~~~~~~~~~W~~G~~-~~~~g~~~ 66 (235)
++..+|-++++.||++.|+..++||+-.++.+..+. .-| -| +.-+++-.|=.... +++...++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHHHHHHHHHH
Confidence 467899999999999999999999997665443100 000 00 00111111211122 22223344
Q ss_pred HHHHHhhccchh------hhchh-hHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccC
Q 026633 67 NFVAYIYAPAVL------VTPLG-ALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (235)
Q Consensus 67 ~~~al~~ap~sl------V~Pl~-~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~ 129 (235)
.+.-|...|..+ +..++ ..+-++++++..++.|++++..-++|-+++++|.++.....+++++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 555555555433 12222 3346788999999999999999999999999998877666554443
No 40
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.013 Score=45.13 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHHhhccchhhhch-hhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 49 LEPLWWVGMFT-MIVGEIANFVAYIYAPAVLVTPL-GALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 49 ~~~~W~~G~~~-~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
+|+.|...+.. ++++..+-..|+..-|..+.=++ ++++.+...+.+..+.||+++..+++|..+++.|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 35555555543 55565666666776777766553 67888999999999999999999999999999998754
No 41
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.25 E-value=0.0055 Score=54.71 Aligned_cols=62 Identities=15% Similarity=0.013 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEee
Q 026633 62 VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (235)
Q Consensus 62 ~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~ 123 (235)
++..+.+.++...|++.++++.-++.+++.+++.+++||+++...+.|+++++.|+.++...
T Consensus 225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999998887665433
No 42
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.93 E-value=0.016 Score=53.81 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=66.9
Q ss_pred HHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccCc-----CCHHHHHHHhcC
Q 026633 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEESL-----NSVQEIWVLATQ 142 (235)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~~-----~~~~~l~~~~~~ 142 (235)
=+||++..++-.+=+.+.|=+|++.++.++.+||+|....++.++.+.|++++.....++.++ ....++..++..
T Consensus 177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA 256 (416)
T KOG2765|consen 177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSA 256 (416)
T ss_pred HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999988886644332 344577766655
Q ss_pred hhHHHHHH
Q 026633 143 PAFLLYVG 150 (235)
Q Consensus 143 ~~f~~y~~ 150 (235)
-.+-+|..
T Consensus 257 ~~YavY~v 264 (416)
T KOG2765|consen 257 LLYAVYTV 264 (416)
T ss_pred HHHHHHHH
Confidence 55555543
No 43
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.69 E-value=0.31 Score=44.05 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEee
Q 026633 52 LWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLH 123 (235)
Q Consensus 52 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~ 123 (235)
....=.++++.|..+-.+++-...++--|-+-+.-++|.-+++.-+||++++.++|.|...+.+|.+.+...
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 333455788999999999999999999999999999999999999999999999999999999998877665
No 44
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.58 E-value=0.024 Score=50.65 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC-C-CC-----CC----CC----cccccchhHH----HHHHHHHHHHHH
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANG-A-RA-----GS----GG----YGYLLEPLWW----VGMFTMIVGEIA 66 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~-~-~~-----~~----~~----~~~~~~~~W~----~G~~~~~~g~~~ 66 (235)
.-|+..++.|+++.+.-...-|+.. ..+..- . .. +. .. ++. .++.+| .|+. ..+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHHH
Confidence 5699999999999888777766531 111100 0 00 00 00 111 222333 3333 4567777
Q ss_pred HHHHHh-hccchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhheeeE
Q 026633 67 NFVAYI-YAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIV 121 (235)
Q Consensus 67 ~~~al~-~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~l~~~G~~~~v 121 (235)
.+.+.. ..+.+.-.++...+.+.+.+.+.+++||+.+++++ .|+++++.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888888 89999999999999999999999999999999999 99999999987654
No 45
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.42 E-value=0.12 Score=40.94 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhee
Q 026633 64 EIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 64 ~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
+..++......++.--+=++.+--+.+.+++..+.+|+++..++.|..+++.|+..
T Consensus 95 n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 95 NLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 34555556666666666778888889999999999999999999999999999764
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.38 E-value=0.1 Score=48.14 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHhhhhhhc-c--------------------CCCCCCCCCccccc---chhHHHH
Q 026633 1 MFSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAG-A--------------------NGARAGSGGYGYLL---EPLWWVG 56 (235)
Q Consensus 1 ~~~~~~igv~lav~sa~~~a~g~vlqk~~~~~~~-~--------------------~~~~~~~~~~~~~~---~~~W~~G 56 (235)
|+++..+|++..+++.+|.+.=.+-|||. ++=+ | -..| +..++++ ...|..+
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~---~f~~~~~~~~~~~~~~~ 76 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLP---DFWAYYSSFSGSTLLPV 76 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHhcCHHHHHHH
Confidence 67788999999999999998888888882 2211 0 0001 1122332 3566666
Q ss_pred HH---HHHHHHHHHHHHHhhccchhhhchh-hHHHHHHHHHHHHHhcccc---ccc----hhhHHHHHhhhheeeEeecC
Q 026633 57 MF---TMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKL---QKM----GMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 57 ~~---~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~---~~~----~~~g~~l~~~G~~~~v~~~~ 125 (235)
++ +-.+|.+.++.++.+...|+-.|++ +++++.+.++..++.+|=- +.. ...|++++++|+++....+.
T Consensus 77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 64 3568999999999999999999996 6788999999999998643 433 35799999999988777554
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=95.34 E-value=0.034 Score=51.46 Aligned_cols=60 Identities=15% Similarity=0.420 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHH------hccccccchhhHHHHHhhhheeeEe
Q 026633 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM------LNEKLQKMGMLGCLLCVVGSTMIVL 122 (235)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~------l~e~~~~~~~~g~~l~~~G~~~~v~ 122 (235)
...+.+.++.+.|++..+=+....-++..++++++ +|||++++++.|++++.+|+.++..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999999999999999999999 6999999999999999999876543
No 48
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.70 E-value=0.36 Score=41.02 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC--------------------CCCCCC--CCcc-ccc-chhHHHHHHH
Q 026633 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYG-YLL-EPLWWVGMFT 59 (235)
Q Consensus 4 ~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~-~~~-~~~W~~G~~~ 59 (235)
+...|+..-+.+.++.+...+.|++..++.+.. ..++++ ...+ ... .+.+|.-.+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 455676666666777788888888864432110 000000 0011 111 1222322334
Q ss_pred HHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhe
Q 026633 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (235)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~ 118 (235)
...|..+-...+.+++.....=......+++.+++.++.+|+++...|.|+.++..|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 45666666667888888889999999999999999999999999999999999998864
No 49
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=93.18 E-value=0.29 Score=45.10 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccC
Q 026633 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (235)
Q Consensus 56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~ 129 (235)
=-+++.+-+-++++++...|++.=+....+-++.++++...+|+||+++++|...++...|+.++=...+++.+
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 34577777779999999999999999999999999999999999999999999999999998877644444433
No 50
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=0.88 Score=34.93 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=39.4
Q ss_pred hhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCC
Q 026633 78 LVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (235)
Q Consensus 78 lV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~ 126 (235)
.-+.-|.+-+..+++-....-|.|.+++||.|...|.+|+. ++.++|.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~-vil~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVA-VILFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhcee-eeEeCCC
Confidence 34566788888899999999999999999999999999944 4566664
No 51
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=92.17 E-value=0.4 Score=42.63 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC-CCC------------CC--CCCcccccchhHHHHHHHHHHH----HH
Q 026633 5 NLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-GAR------------AG--SGGYGYLLEPLWWVGMFTMIVG----EI 65 (235)
Q Consensus 5 ~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~-~~~------------~~--~~~~~~~~~~~W~~G~~~~~~g----~~ 65 (235)
.-.|+.+|+.+..|-+.=.+.-||.-+..+.. +.. -| +.....+.-+.-..++..-+++ +.
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 35799999999999887777766644322110 000 00 0112233333333444444444 56
Q ss_pred HHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeec
Q 026633 66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (235)
Q Consensus 66 ~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~ 124 (235)
+..+|+.-.|...-.-+.++.-.+..+.+..++||++|..+|.|+++++.++.-.....
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 88999999999999999999999999999999999999999999999999977544433
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=91.46 E-value=0.18 Score=44.85 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC-------CC----------CCccccc----c--------hhHH
Q 026633 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA-------GS----------GGYGYLL----E--------PLWW 54 (235)
Q Consensus 4 ~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~-------~~----------~~~~~~~----~--------~~W~ 54 (235)
....|.++++.|+++.++..++.||..++.+.+..+. +. +..+... + ..|.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 3467999999999999999999888543111000000 00 0000000 0 1121
Q ss_pred HHHHHH----HHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 55 VGMFTM----IVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 55 ~G~~~~----~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
.+.... ...+..++.++...+++-.+-.+.+.-+++.+++..++||+++..++.|.++++.|+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 121111 111234455677778888888888888999999999999999999999999999998654
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=91.20 E-value=0.31 Score=43.85 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=55.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhccch---hhhchhh-HHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAV---LVTPLGA-LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 45 ~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~s---lV~Pl~~-~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
++..|+|+=+....+..+=..+|.--+-+||-. +=+.+|= +.-++|..+++.++|||+++.+|+++.+..+|+...
T Consensus 63 ~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 63 KQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 346777766666665555555777777777755 3333332 233578899999999999999999999999998754
Q ss_pred Ee
Q 026633 121 VL 122 (235)
Q Consensus 121 v~ 122 (235)
..
T Consensus 143 ~~ 144 (293)
T COG2962 143 TW 144 (293)
T ss_pred HH
Confidence 33
No 54
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.72 E-value=0.32 Score=37.62 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=63.8
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhchh-hHHHHHHHHHHHHHhccccc-cchhhHHHHHhhhheee
Q 026633 43 GGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQ-KMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 43 ~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~-~~~~~g~~l~~~G~~~~ 120 (235)
+.+..+.++..|+=+++.-.|+...+.-++-+|.++-.|.. +++..|+.+++..+ ||+.. ++...|+.++++|+.+.
T Consensus 45 e~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 45 EMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence 34456778888999999889999999999999999999986 56888899888765 56554 56678999999998764
Q ss_pred E
Q 026633 121 V 121 (235)
Q Consensus 121 v 121 (235)
+
T Consensus 124 i 124 (125)
T KOG4831|consen 124 I 124 (125)
T ss_pred e
Confidence 3
No 55
>PRK02237 hypothetical protein; Provisional
Probab=89.35 E-value=1.8 Score=33.50 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=38.7
Q ss_pred hhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCC
Q 026633 79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (235)
Q Consensus 79 V~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~ 126 (235)
-+.-|.+-++.+.+-....-|+|.++.|++|..+|.+|+.++ .++|.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR 108 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR 108 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence 344677888888899999999999999999999999997654 45553
No 56
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=89.22 E-value=0.88 Score=40.68 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhhee
Q 026633 59 TMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTM 119 (235)
Q Consensus 59 ~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~l~~~G~~~ 119 (235)
+...|+++.+.+-.-.-+..=-|++..+++.+.+-+-+++||+=+++|+ .|+++++.|.++
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3456777788887777788888999999999999999999999998885 588899888764
No 57
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.05 E-value=1 Score=34.73 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=37.8
Q ss_pred hchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecC
Q 026633 80 TPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 80 ~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
+.-|.+-++.+.+-....-|+|.++.|++|..+|.+|+.++ .++|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~P 105 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAP 105 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecC
Confidence 44567788888999999999999999999999999997755 4444
No 58
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=82.39 E-value=0.56 Score=41.90 Aligned_cols=60 Identities=27% Similarity=0.485 Sum_probs=52.5
Q ss_pred HHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCc
Q 026633 68 FVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (235)
Q Consensus 68 ~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~ 127 (235)
.-|+.+....-++-|..-+.+.-.+++.++||.|-+...+.|++.|+.|+++++...-+.
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 567888888888999999999999999999999999999999999999999887765433
No 59
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=79.85 E-value=4.1 Score=37.37 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=39.1
Q ss_pred HHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhee
Q 026633 70 AYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 70 al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
.+.-.++.--+=.+.+.-++..+++..++||+++..+++|.++++.|+.+
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 44444444444455566788899999999999999999999999999764
No 60
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=76.71 E-value=23 Score=30.89 Aligned_cols=109 Identities=22% Similarity=0.351 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC--------------------CCCCCC--CCcccccchhHHH--HHHH
Q 026633 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN--------------------GARAGS--GGYGYLLEPLWWV--GMFT 59 (235)
Q Consensus 4 ~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~~~~~W~~--G~~~ 59 (235)
+..+|+.+.++++++.+++.+..+|-.++.+.+ -.+++. .....++...||. =+.+
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 467999999999999999999888876654320 000000 0111222222222 1223
Q ss_pred HHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHH
Q 026633 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLL 112 (235)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l 112 (235)
...|-+.-...+.+++-.+=.=-.+++++.+.+++..+.+.+++..-.+|+.+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 34444444445666664444445677888888888888888888877776654
No 61
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.71 E-value=2.8 Score=31.99 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=57.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHH---HHHHhhccchh
Q 026633 2 FSSNLIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIAN---FVAYIYAPAVL 78 (235)
Q Consensus 2 ~~~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~---~~al~~ap~sl 78 (235)
|+.....+++=+.|++++.++- +++.+...+. .-..---.|=+.+.=+.+..-.| -..|+-+.+-.
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFAW----YghLk~~~~p-------l~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~ 73 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFAW----YGHLKFTNKP-------LVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKT 73 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHHH----HHHHhccCCc-------hhHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHH
Confidence 6667778888888998877653 3443332110 00000122322222122211111 11222222223
Q ss_pred hhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhee
Q 026633 79 VTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 79 V~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
.| -.+++..=.++|.+++||+++...+.|..++..|+.+
T Consensus 74 mQ--EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 74 MQ--EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HH--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 33 2456667788999999999999988888777776654
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=74.64 E-value=15 Score=32.67 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCC--CC------------------CCc----ccccchhHHHHHHH-H
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARA--GS------------------GGY----GYLLEPLWWVGMFT-M 60 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~--~~------------------~~~----~~~~~~~W~~G~~~-~ 60 (235)
..|+.+.+.+-++.+.-.+.|+|-.++.+.+..+. .. +.. ...+.|..+.-+.+ .
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 34999999999999999999999765543321000 00 000 01223433333332 3
Q ss_pred HHHHHHHHHH---HhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhee
Q 026633 61 IVGEIANFVA---YIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 61 ~~g~~~~~~a---l~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
..+.+++..- ..--.....+-.+.+--+++.+++.++.+++++...|.|.+++..|..+
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3344443322 2222333444455556678889999999999999999999999999754
No 63
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=73.45 E-value=6.3 Score=35.68 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-cchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCccC
Q 026633 51 PLWWVGMFTMIVGEIANFVAYIYA-PAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (235)
Q Consensus 51 ~~W~~G~~~~~~g~~~~~~al~~a-p~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~~~ 129 (235)
+.|..=..++-.-++.|=.|+.|. |..+=.=+-+-+++.|++++..++|+|-+.+++..++++.+|+++...++.+|..
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 455555555555667777778776 4444445678899999999999999999999999999999999988888776654
No 64
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=72.97 E-value=3.6 Score=31.73 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHhhhhee
Q 026633 85 LSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 85 ~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
+++..=.+++.+++||+++.....|-++++.++.+
T Consensus 71 itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 71 ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 44444567899999999999988888777666544
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=68.39 E-value=15 Score=34.10 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhccccc--cch----hhHHHHHhhhheeeEee
Q 026633 84 ALSIIVSAVLAHFMLNEKLQ--KMG----MLGCLLCVVGSTMIVLH 123 (235)
Q Consensus 84 ~~~lv~~~~~a~~~l~e~~~--~~~----~~g~~l~~~G~~~~v~~ 123 (235)
+.+++++.+=+- ++||+=+ +++ +.|++++++|.+++.+.
T Consensus 298 ~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 298 SFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 555555555444 4899877 554 57999999998876543
No 66
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=60.05 E-value=83 Score=24.96 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=25.6
Q ss_pred HHHHHHHHHHH----HhccccccchhhHHHHHhhhhee
Q 026633 86 SIIVSAVLAHF----MLNEKLQKMGMLGCLLCVVGSTM 119 (235)
Q Consensus 86 ~lv~~~~~a~~----~l~e~~~~~~~~g~~l~~~G~~~ 119 (235)
.++.+.++-++ .-|+|++.++..|..++++|+.+
T Consensus 101 Ql~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 101 QLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44555666665 35788999999999999999753
No 67
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=58.32 E-value=23 Score=30.71 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecC
Q 026633 66 ANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 66 ~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
....|+.--+++.++.+.+..--|-.+++.+.+|+|+.-.+++...+.+.|++++.+...
T Consensus 69 ~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 69 LYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred HHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 456778888889999999988889999999999999999999999999999888765543
No 68
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=55.95 E-value=49 Score=29.88 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=51.5
Q ss_pred cccchhHHHHHHHHHHHHHHHH----HHHhhccchhhhchhhHHHHHHHHHHHH-Hhccc--cccch----hhHHHHHhh
Q 026633 47 YLLEPLWWVGMFTMIVGEIANF----VAYIYAPAVLVTPLGALSIIVSAVLAHF-MLNEK--LQKMG----MLGCLLCVV 115 (235)
Q Consensus 47 ~~~~~~W~~G~~~~~~g~~~~~----~al~~ap~slV~Pl~~~~lv~~~~~a~~-~l~e~--~~~~~----~~g~~l~~~ 115 (235)
-+++|.-|.=+..++...+.|. -|+..-+.++|.|+--.......+++-. +.+|- .+..+ ..|+..++.
T Consensus 206 ~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~ 285 (300)
T PF05653_consen 206 QFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIII 285 (300)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 4556665555555444444443 3677889999999998888766665554 55653 33333 368999999
Q ss_pred hheeeEeecCC
Q 026633 116 GSTMIVLHAPL 126 (235)
Q Consensus 116 G~~~~v~~~~~ 126 (235)
|+.++....++
T Consensus 286 GV~lL~~~~~~ 296 (300)
T PF05653_consen 286 GVFLLSSSKDK 296 (300)
T ss_pred hhheeeccCch
Confidence 98887555443
No 69
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=54.31 E-value=18 Score=33.08 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeE
Q 026633 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIV 121 (235)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v 121 (235)
..+|-+..-.|+..-|++.+|-.-+...++++++++++.+|+.++..+.-...++.|+.+-.
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias 154 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS 154 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence 34677788889999999999999999999999999999999999999988888888866543
No 70
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=53.95 E-value=95 Score=29.37 Aligned_cols=122 Identities=14% Similarity=0.232 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC-CCCC-----------------------CCCCcccccch----hHHH
Q 026633 4 SNLIGFILAVVSSAFIGSSFIIKKKGLRKAGAN-GARA-----------------------GSGGYGYLLEP----LWWV 55 (235)
Q Consensus 4 ~~~igv~lav~sa~~~a~g~vlqk~~~~~~~~~-~~~~-----------------------~~~~~~~~~~~----~W~~ 55 (235)
...+|-++|+.||++.|+=.++-||...+++++ +.+. +.+..+...++ .-..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 347999999999999999999988865555321 1100 00111111111 1123
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecC
Q 026633 56 GMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 56 G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
|...-+++.-++..|.......+++-=.++++..+++.=..+-+.+.+...++|...+.+|-+.+-+...
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3344445555666666665555554444566666666555555888999999999999999766554443
No 71
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=52.40 E-value=1.5e+02 Score=27.31 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecCCc
Q 026633 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAPLE 127 (235)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~~ 127 (235)
-.++.-++.-|+.+-+--...=-=+.=++-.++.....-|+|.+.+|.+-.+++..|+.+...+..++
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 34667788888887753322222233355567778888899999999999999999998888885544
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=43.10 E-value=5.8 Score=35.32 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchh----hHHHHHhhhheeeEe
Q 026633 63 GEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGM----LGCLLCVVGSTMIVL 122 (235)
Q Consensus 63 g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~----~g~~l~~~G~~~~v~ 122 (235)
|++..+.|-.-.-...=-.++..+++.+.+=+-+++|||=|++|+ .|+.++++|++++..
T Consensus 222 GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 222 GNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 344333333333333334566777788888888999999999995 699999999876643
No 73
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.61 E-value=15 Score=33.29 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhhe
Q 026633 62 VGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGST 118 (235)
Q Consensus 62 ~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~ 118 (235)
++...|-..+.+-|++.=+==-++..+||.+++..++|+|-+..-..+|.+++.|-.
T Consensus 114 ~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 114 LMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred eehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 334455556667666665555678899999999999999999998999999888843
No 74
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=38.22 E-value=2.1e+02 Score=24.11 Aligned_cols=42 Identities=29% Similarity=0.590 Sum_probs=26.2
Q ss_pred HHHHHHHHHH---HHHHHHHhhc---------cchhhhchhhHHHHHH--HHHHHH
Q 026633 55 VGMFTMIVGE---IANFVAYIYA---------PAVLVTPLGALSIIVS--AVLAHF 96 (235)
Q Consensus 55 ~G~~~~~~g~---~~~~~al~~a---------p~slV~Pl~~~~lv~~--~~~a~~ 96 (235)
.||++.++|. ++..++-+.. |-..++|+..+.+..| .++||+
T Consensus 113 ~Gmllt~lG~~a~vG~L~ak~lsqp~g~~~~~~~~~i~~lDvf~vqAn~n~i~AHf 168 (183)
T PF12263_consen 113 VGMLLTLLGAQATVGTLVAKALSQPQGAAIYNPSQPIRALDVFVVQANTNTILAHF 168 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 4555544442 3445554444 6678889998888754 666665
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=37.88 E-value=33 Score=30.64 Aligned_cols=91 Identities=13% Similarity=0.240 Sum_probs=69.3
Q ss_pred cccchhHHHHHHH---HHHHHHHHHHHHhhccchhhhchh-hHHHHHHHHHHHHHhccccccch----hhHHHHHhhhhe
Q 026633 47 YLLEPLWWVGMFT---MIVGEIANFVAYIYAPAVLVTPLG-ALSIIVSAVLAHFMLNEKLQKMG----MLGCLLCVVGST 118 (235)
Q Consensus 47 ~~~~~~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~-~~~lv~~~~~a~~~l~e~~~~~~----~~g~~l~~~G~~ 118 (235)
.+.-..|..|+.. -..|...||-|...-..|--.|+. +..++-+.+++.+.+||=-+..+ ..+.+++++|+.
T Consensus 53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~ 132 (288)
T COG4975 53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY 132 (288)
T ss_pred ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence 3444667788763 357888999999999999999996 57889999999999999877655 357889999998
Q ss_pred eeEeecCCccCcCCHHHHH
Q 026633 119 MIVLHAPLEESLNSVQEIW 137 (235)
Q Consensus 119 ~~v~~~~~~~~~~~~~~l~ 137 (235)
+-..-.+.+.+..+++.+.
T Consensus 133 lTs~~~~~nk~~~~~~n~k 151 (288)
T COG4975 133 LTSKQDRNNKEEENPSNLK 151 (288)
T ss_pred EeeeeccccccccChHhhh
Confidence 8877776444444444443
No 76
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=37.30 E-value=1e+02 Score=27.95 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh-hhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKG-LRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAY 71 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~-~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al 71 (235)
.+|+..|+.=++.+-+-.+-.+|| ...-+.+ .| ....=||+.|...+.....|.+..|.+.
T Consensus 48 ~vGI~fav~f~i~lvltLvnL~KHG~~~lp~e-KR----f~~iGRRwqWyW~~fv~a~~~iS~f~~I 109 (296)
T PF10361_consen 48 SVGIAFAVLFAIALVLTLVNLRKHGRLYLPLE-KR----FYPIGRRWQWYWMLFVCACGLISLFMSI 109 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhcCCch-hc----ccccchhHHHHHHHHHHHHHHHhhheee
Confidence 578888888777777776545554 3333321 11 2345578999999988888888777664
No 77
>PRK11469 hypothetical protein; Provisional
Probab=36.92 E-value=2.5e+02 Score=23.50 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=10.0
Q ss_pred hhh-HHHHHhhhhee
Q 026633 106 GML-GCLLCVVGSTM 119 (235)
Q Consensus 106 ~~~-g~~l~~~G~~~ 119 (235)
|+. |+.++++|.-+
T Consensus 167 ~~lgG~iLI~iGi~i 181 (188)
T PRK11469 167 EILGGLVLIGIGVQI 181 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444 88899988653
No 78
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=36.68 E-value=59 Score=30.42 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=42.1
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcc---------------------------ccccchhhHHHHHhhhheeeEeecCCccC
Q 026633 77 VLVTPLGALSIIVSAVLAHFMLNE---------------------------KLQKMGMLGCLLCVVGSTMIVLHAPLEES 129 (235)
Q Consensus 77 slV~Pl~~~~lv~~~~~a~~~l~e---------------------------~~~~~~~~g~~l~~~G~~~~v~~~~~~~~ 129 (235)
++.-|-.-++.+..++.+.+.-|| +.++..+.+..+...|++.++.++.-++.
T Consensus 167 ~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g~f~~l 246 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYGSFPSL 246 (364)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 445566777777777777665332 23334467888888888877777754443
Q ss_pred cCCHHHHHHHhcChhHHHHHHHH
Q 026633 130 LNSVQEIWVLATQPAFLLYVGSV 152 (235)
Q Consensus 130 ~~~~~~l~~~~~~~~f~~y~~~~ 152 (235)
.-..++ ..+..+..+--+.+.
T Consensus 247 rp~~~~--~~l~m~~~Iq~~ML~ 267 (364)
T PF03605_consen 247 RPGFIK--KPLSMTDAIQMFMLA 267 (364)
T ss_pred cccccc--cCCCHHHHHHHHHHH
Confidence 333333 344444433333333
No 79
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=35.92 E-value=43 Score=29.85 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhccccccchhhHHHHHhhhheeeEeecC
Q 026633 87 IIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 87 lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
=.|+.+.+..+.+.+++.++|+|+.++..+...-+..+.
T Consensus 278 KfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 278 KFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 368899999999999999999999999999777666654
No 80
>PF15196 Harakiri: Activator of apoptosis harakiri; PDB: 2L58_A 2L5B_A.
Probab=35.70 E-value=72 Score=23.14 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHH
Q 026633 12 AVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGM 57 (235)
Q Consensus 12 av~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~ 57 (235)
-+.++-+.++|.-+|++.+++..+...........|-.++.|++..
T Consensus 31 q~ta~rlkalgdel~~r~mrrrar~r~~~~~~lpa~rarw~wlcaa 76 (92)
T PF15196_consen 31 QLTAARLKALGDELHRRTMRRRARSRRPAPAALPAYRARWPWLCAA 76 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhhHHHHHH
Confidence 4667778999999999988665543111111233456678887653
No 81
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.06 E-value=3e+02 Score=23.60 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=35.8
Q ss_pred cchhHHHHHHHHHHHHHHH---HHHHhhccchhh--hchhhHHHHHHHHHH-HHHhccccccc
Q 026633 49 LEPLWWVGMFTMIVGEIAN---FVAYIYAPAVLV--TPLGALSIIVSAVLA-HFMLNEKLQKM 105 (235)
Q Consensus 49 ~~~~W~~G~~~~~~g~~~~---~~al~~ap~slV--~Pl~~~~lv~~~~~a-~~~l~e~~~~~ 105 (235)
+||.||=+++...+....+ +.+-+|.|.++= -|=-+..++-..+++ ++++|+|.+.+
T Consensus 157 qr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~NIq 219 (226)
T COG4858 157 QRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKKNIQ 219 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4688888887766665544 456677787763 333445555555555 56668877654
No 82
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.14 E-value=23 Score=27.74 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHhheeeec
Q 026633 143 PAFLLYVGSVVAVALVLILYCAPR 166 (235)
Q Consensus 143 ~~f~~y~~~~~~~~~~l~~~~~~~ 166 (235)
|.+.+-+++.+++++++.++..+|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333333333333333333
No 83
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=33.04 E-value=56 Score=24.66 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=31.3
Q ss_pred cCCHHHHHHHhcChhHHHHHHHHHHHHHHHhheeeeccCccchhhhhhhhhhhhhh
Q 026633 130 LNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAPRYGQTNILIYIGICSVIGSL 185 (235)
Q Consensus 130 ~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~lg~~ 185 (235)
+..-+++++.+.++.-..|...+..+...+ -..+...+.++.+.-+.+||.++-.
T Consensus 5 P~~W~~ll~wl~~~~~~~~~a~lA~~mA~L-R~~Y~g~~~~r~llea~lCg~lal~ 59 (100)
T PF05106_consen 5 PDFWAQLLAWLQSHWPQIYGALLAFVMALL-RGAYGGGSWRRRLLEALLCGLLALF 59 (100)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 334567777766554444444444332222 1123455567789999999987644
No 84
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=33.02 E-value=3.7e+02 Score=24.25 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhh-----ccchhhh
Q 026633 6 LIGFILAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIY-----APAVLVT 80 (235)
Q Consensus 6 ~igv~lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~-----ap~slV~ 80 (235)
..++...+++.+..-+++...|++.++..+.+.+-+ ....-...-.+|..+.++|.+....++.- .-..+=.
T Consensus 46 ~~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~---iG~tG~~Lilig~il~iig~i~~i~~~~~~~~~~~l~~ig~ 122 (285)
T PF06157_consen 46 IVAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDVG---IGKTGATLILIGYILIIIGAILAIISLFSILAGLILLLIGA 122 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666777777888766554322211 12232334445555555555433322110 0000001
Q ss_pred chhhHHHHHHHHHHHHHhccccccch-hhHHHHHhhhh
Q 026633 81 PLGALSIIVSAVLAHFMLNEKLQKMG-MLGCLLCVVGS 117 (235)
Q Consensus 81 Pl~~~~lv~~~~~a~~~l~e~~~~~~-~~g~~l~~~G~ 117 (235)
.+.-++.+.- .++.+-++|+.+... ..|..+.+++.
T Consensus 123 il~~IG~ILl-gi~~yrlG~~y~~~~ikvgGIL~ii~~ 159 (285)
T PF06157_consen 123 ILAFIGYILL-GIGLYRLGSRYNNGLIKVGGILIIIPI 159 (285)
T ss_pred HHHHHHHHHH-HHHHHHHhhhhccCceehhhHHHHHHH
Confidence 1222222222 246666777766544 34555555543
No 85
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=30.87 E-value=3.9e+02 Score=23.87 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccc---hhhhchhhH--HHHHHHHHHHH---HhccccccchhhHHHHHhhhheeeEeecCC
Q 026633 55 VGMFTMIVGEIANFVAYIYAPA---VLVTPLGAL--SIIVSAVLAHF---MLNEKLQKMGMLGCLLCVVGSTMIVLHAPL 126 (235)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap~---slV~Pl~~~--~lv~~~~~a~~---~l~e~~~~~~~~g~~l~~~G~~~~v~~~~~ 126 (235)
+||..+..|.+.....+..... .++.|+.++ +.+...+.+.. ..|-++...+.-=+-+...|+..+.-++..
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~a 154 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIGAVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSAA 154 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888777777777776666543 566776543 22333332222 223333333332233333443333333332
Q ss_pred ccCcCCHHHHHHHhcChhHHHHHHHHHHHHHH---HhheeeeccCccchhhhhhhhhhhhhhh
Q 026633 127 EESLNSVQEIWVLATQPAFLLYVGSVVAVALV---LILYCAPRYGQTNILIYIGICSVIGSLT 186 (235)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~---l~~~~~~~~~~~~~l~~~~~~g~lg~~t 186 (235)
-...++.+++.+...++.++.-.++...+... -.| ..|.-.|+|-+.....||.+.-..
T Consensus 155 iaGsf~~~~i~~~vi~~G~IAl~Fi~~~mAIlHPFNAC-LGPnE~q~RTL~la~~~G~ls~ii 216 (262)
T PF04211_consen 155 IAGSFDFDSIITSVINTGYIALLFIIGGMAILHPFNAC-LGPNESQDRTLTLAVECGFLSMII 216 (262)
T ss_pred HhccccHHHHHHHHhccCHHHHHHHHHHHHhcCccccc-cCCCcchhHHHHHHHHHHHHHHHH
Confidence 33456778888888888876665554443221 112 456666788888888887665443
No 86
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.79 E-value=1.2e+02 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=16.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHH
Q 026633 46 GYLLEPLWWVGMFTMIVGEIANF 68 (235)
Q Consensus 46 ~~~~~~~W~~G~~~~~~g~~~~~ 68 (235)
.-+|+|.||++++..++-.+-++
T Consensus 6 vR~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 6 VRFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred hcccCHHHHHHHHHHHHHHHHHH
Confidence 35689999999887655444444
No 87
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.58 E-value=4.1e+02 Score=23.74 Aligned_cols=134 Identities=13% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-c-hhhhchhhHHHHHHHHHHHH-------HhccccccchhhHHHHHhhhheeeEeecC
Q 026633 55 VGMFTMIVGEIANFVAYIYAP-A-VLVTPLGALSIIVSAVLAHF-------MLNEKLQKMGMLGCLLCVVGSTMIVLHAP 125 (235)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~ap-~-slV~Pl~~~~lv~~~~~a~~-------~l~e~~~~~~~~g~~l~~~G~~~~v~~~~ 125 (235)
+||..+..|.+....+..+.. . .++.|.-+ ++++++++.. ..|-|+...+.-=+-+...|+.-+.-++.
T Consensus 75 IGm~alG~G~vaal~G~~i~g~i~~~a~PI~a--lIia~IiG~vvG~la~~vi~MkIPiM~~~mtels~agaLailG~s~ 152 (265)
T TIGR01148 75 IGMMSLGMGILAAVAGLALGGNTPAIAAPIIA--LVVAAIIGGVVGVLANKVIGMKIPIMERCMTEISCAGTLALLGLSV 152 (265)
T ss_pred HHHHHHhHHHHHHHHHHHccccchHHHHHHHH--HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 688888778887777777722 2 26667543 3444443332 22333333333223333333332222222
Q ss_pred CccCcCCHHHHHHHhcChhHHHHHHHHHHHHHH---HhheeeeccCccchhhhhhhhhhhhhhhHHHHH
Q 026633 126 LEESLNSVQEIWVLATQPAFLLYVGSVVAVALV---LILYCAPRYGQTNILIYIGICSVIGSLTVMSVK 191 (235)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~---l~~~~~~~~~~~~~l~~~~~~g~lg~~tvl~aK 191 (235)
--...++.+.+.+...++.++.-.++...+... -.| ..|.-.|+|-+....-||.+.-+-.-..|
T Consensus 153 aiaGsf~~~~~~~~vi~~G~IAl~Fi~~~mAilHPFNAC-LGPnE~q~RTL~La~e~G~ls~ii~~i~s 220 (265)
T TIGR01148 153 AIAGSFTWQAVISYVIANGYIALLFIIGGMAILHPFNAC-LGPNESQDRTLWLAVECGFITGFVSSLHE 220 (265)
T ss_pred HHhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCcchhc-cCCCcchhHHHHHHHHHhHHHHHHHHHHH
Confidence 222356778888888888877665555443321 112 46666678888888888866655443333
No 88
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=29.57 E-value=85 Score=19.87 Aligned_cols=18 Identities=33% Similarity=0.800 Sum_probs=10.7
Q ss_pred cchhHHHHHHH--HHHHHHH
Q 026633 49 LEPLWWVGMFT--MIVGEIA 66 (235)
Q Consensus 49 ~~~~W~~G~~~--~~~g~~~ 66 (235)
|-|+|++|... .+++.++
T Consensus 7 RIPLWlVgtv~G~~vi~lvg 26 (40)
T PF01788_consen 7 RIPLWLVGTVAGIAVIGLVG 26 (40)
T ss_dssp SS-HHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 56999999863 3444443
No 89
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]
Probab=22.37 E-value=4.2e+02 Score=25.90 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHH----------HHHHHHHHHHh--hccchhhhc
Q 026633 14 VSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMI----------VGEIANFVAYI--YAPAVLVTP 81 (235)
Q Consensus 14 ~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~----------~g~~~~~~al~--~ap~slV~P 81 (235)
.++.|...|.+.+|.|.++.++- ....++-.|..++.+.. .|.++.|.-+. |..-.+++=
T Consensus 339 sa~LFl~vG~iy~r~hTr~i~~~--------GGl~~~mP~~aa~~~~~~mAs~glPG~sgFvgEFlil~G~f~~~~~~~~ 410 (497)
T COG1008 339 SAALFLLVGVLYERTHTRDIADL--------GGLANKMPKLAALFMLFAMASLGLPGTSGFVGEFLILLGSFQVFPWVAF 410 (497)
T ss_pred HHHHHHHHHHHHHhhcchhHHHh--------CCHHhhChHHHHHHHHHHHHhcCCCccchHHHHHHHHhhhhhhhHHHHH
Confidence 34556677777777776665532 12444544555543221 12333333221 333346666
Q ss_pred hhhHHHHHHHHHHHHHhcc
Q 026633 82 LGALSIIVSAVLAHFMLNE 100 (235)
Q Consensus 82 l~~~~lv~~~~~a~~~l~e 100 (235)
+...++++++...-+..||
T Consensus 411 la~~g~iltA~Y~L~~~~r 429 (497)
T COG1008 411 LAAFGLILTAVYMLWMYQR 429 (497)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888777777666
No 90
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=22.35 E-value=3.5e+02 Score=23.62 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=52.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhccc-hhhh--------chhhHHHHHHHHHHHHHhccccccchhhHHHHH--hhhh
Q 026633 49 LEPLWWVGMFTMIVGEIANFVAYIYAPA-VLVT--------PLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLC--VVGS 117 (235)
Q Consensus 49 ~~~~W~~G~~~~~~g~~~~~~al~~ap~-slV~--------Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~--~~G~ 117 (235)
.|.+|..-.+-+ -|.-.++.|+..-++ ..-- =+.=.++.++++++..-.+||.+++..+-.++. +.|+
T Consensus 90 trsrilf~~lyf-wgig~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~svl~~~~lg~ 168 (236)
T COG5522 90 TRSRILFSVLYF-WGIGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMSVLVAISLGI 168 (236)
T ss_pred hcchHhhhhHHH-hhhhHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHH
Confidence 344444443332 233346777766665 2222 244567778899999999999999987644433 3344
Q ss_pred eeeEeecC---------CccCcCCHHHHHHHhcChhH
Q 026633 118 TMIVLHAP---------LEESLNSVQEIWVLATQPAF 145 (235)
Q Consensus 118 ~~~v~~~~---------~~~~~~~~~~l~~~~~~~~f 145 (235)
....+++- |+++. .++.+.+.-|++
T Consensus 169 ~~lfinrrLGtNYlylsk~P~~---~sildvlgpwp~ 202 (236)
T COG5522 169 MCLFINRRLGTNYLYLSKEPES---ASILDVLGPWPF 202 (236)
T ss_pred HHHHHHHHhcCceeEeecCCCc---hhHHHHhcCccH
Confidence 43333331 22221 367777766663
No 91
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=22.24 E-value=5.7e+02 Score=22.87 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc---cchhhhchhhHHHHHHHHHHHHH-------hccccccchhhHHHHHhhhheeeEeec
Q 026633 55 VGMFTMIVGEIANFVAYIYA---PAVLVTPLGALSIIVSAVLAHFM-------LNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (235)
Q Consensus 55 ~G~~~~~~g~~~~~~al~~a---p~slV~Pl~~~~lv~~~~~a~~~-------l~e~~~~~~~~g~~l~~~G~~~~v~~~ 124 (235)
+||..+..|.+.......+. ++.++.|.-+ ++++++++... .|-|+...+.-=+-+...|+.-+.-++
T Consensus 68 IGmlalGmG~iaal~G~~i~~~~~~~~~~PI~~--liia~iiG~vvG~lan~vigMkIPiM~~smtels~agaLailG~s 145 (264)
T PRK01030 68 IGMLALGMGTIAALAGVAIGDALGIVLAGPIVA--LIIAAIIGAVVGKLANNVVGMKIPIMERSMTELSGAGALAILGFS 145 (264)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHH--HHHHHHHHHHHHHHHcccccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 68887777777766666665 3357777643 33333333322 222332222222223333333222222
Q ss_pred CCccCcCCHHHHHHHhcChhHHHHHHHHHHHHHH---HhheeeeccCccchhhhhhhhhhhhhhh
Q 026633 125 PLEESLNSVQEIWVLATQPAFLLYVGSVVAVALV---LILYCAPRYGQTNILIYIGICSVIGSLT 186 (235)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~~~~~---l~~~~~~~~~~~~~l~~~~~~g~lg~~t 186 (235)
..-...++.+.+.+...++.++.-.++...+... -.| ..|.-.|+|-+....-||.+.-.-
T Consensus 146 ~a~~Gsf~~~~~~~~vi~~G~IAl~FI~~~mAIlHPFNAC-LGP~E~q~RTL~la~e~G~ls~ii 209 (264)
T PRK01030 146 TAIAGSFDFDAIITSVIATGFIALLFILGGMAILHPFNAC-LGPNESQDRTLTLAVECGFLSMII 209 (264)
T ss_pred HHHhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCccccc-cCCCcchhHHHHHHHHHHHHHHHH
Confidence 2222346778888888888877665555543321 112 456666788888878887665443
No 92
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.19 E-value=69 Score=25.98 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=24.9
Q ss_pred chhhHHHHHhhhheeeEeecCCc--cCcCCHHHHHHH
Q 026633 105 MGMLGCLLCVVGSTMIVLHAPLE--ESLNSVQEIWVL 139 (235)
Q Consensus 105 ~~~~g~~l~~~G~~~~v~~~~~~--~~~~~~~~l~~~ 139 (235)
+++..++|+.+-++++.+.+|.. .+.++++|+.+.
T Consensus 2 r~~~s~~Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~i 38 (142)
T TIGR03042 2 RSLASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQI 38 (142)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcccCCCCCCHHHHHHH
Confidence 45778888877777777777765 447888887553
No 93
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=21.15 E-value=2.4e+02 Score=22.54 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=38.7
Q ss_pred cCCHHHHHHHhcChhHHHHHHHHHHHHHHHhheeee--ccCccc----hhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026633 130 LNSVQEIWVLATQPAFLLYVGSVVAVALVLILYCAP--RYGQTN----ILIYIGICSVIGSLTVMSVKAIGIAIKL 199 (235)
Q Consensus 130 ~~~~~~l~~~~~~~~f~~y~~~~~~~~~~l~~~~~~--~~~~~~----~l~~~~~~g~lg~~tvl~aK~~~~~l~~ 199 (235)
..|.+|-.+++ ++.++.|..+..++..+++++... +.-++. .........++++......|..+...++
T Consensus 54 eTn~~Ea~ell-s~~~~~~~l~~~vlP~~~l~~~~i~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Rn 128 (156)
T PF08019_consen 54 ETNTAEASELL-SWKLILWLLLLGVLPALLLWRVRIKKRSWKRELLRRLLLILLSLLVIAGIAFLFYKDYASFFRN 128 (156)
T ss_pred HcCHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 35677888876 477778877777664444443322 211111 2222222334555566778888887775
No 94
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=20.98 E-value=36 Score=30.91 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHhhhheee--EeecCC
Q 026633 88 IVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI--VLHAPL 126 (235)
Q Consensus 88 v~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~--v~~~~~ 126 (235)
.++++++-++.+.++++..|+|+.++..|..+. +...|+
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 467788888899999999999999999997753 344444
No 95
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=20.93 E-value=2.1e+02 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHH
Q 026633 60 MIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFM 97 (235)
Q Consensus 60 ~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~ 97 (235)
.+++..+...++...|++.++|+.-+.-+++.+++.+.
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999988764
No 96
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=5.5e+02 Score=23.61 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHHHHHhccccccchhhHHHHHhhhheee
Q 026633 51 PLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLAHFMLNEKLQKMGMLGCLLCVVGSTMI 120 (235)
Q Consensus 51 ~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~ 120 (235)
+.|.-==+++.+....+.-++.+.|+...+-+--.+.++.++--..++|.|.++..|......++|+..-
T Consensus 78 kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 78 KKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred HHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 3343333445455567788899999999999999999999999999999999999999999999997653
Done!