Query 026633
Match_columns 235
No_of_seqs 140 out of 612
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.9 1.4E-08 4.7E-13 77.5 9.7 99 11-124 6-105 (110)
2 2i68_A Protein EMRE; transmemb 98.7 1.7E-08 5.8E-13 80.1 6.1 99 11-124 6-105 (137)
3 3arc_J Photosystem II reaction 26.8 61 0.0021 19.6 2.9 17 49-65 7-25 (40)
4 3o7q_A L-fucose-proton symport 16.5 4.1E+02 0.014 22.1 7.5 33 45-77 252-284 (438)
5 2hac_A T-cell surface glycopro 10.4 1.8E+02 0.0062 16.8 2.1 22 84-105 10-31 (33)
6 3arc_L Photosystem II reaction 9.3 3.3E+02 0.011 16.0 3.4 24 208-231 14-37 (37)
7 4a2n_B Isoprenylcysteine carbo 7.9 7.7E+02 0.026 19.2 8.0 21 43-64 119-139 (194)
8 1v54_C Cytochrome C oxidase po 6.2 1E+03 0.035 19.6 6.1 26 48-74 75-100 (261)
9 1pp9_C Cytochrome B; cytochrom 5.2 4.6E+02 0.016 23.3 3.4 25 46-70 106-130 (379)
10 3mk7_C Cytochrome C oxidase, C 5.2 1.3E+03 0.044 19.1 8.1 21 51-71 55-76 (311)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.86 E-value=1.4e-08 Score=77.48 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhch-hhHHHHH
Q 026633 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIV 89 (235)
Q Consensus 11 lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~ 89 (235)
+-+.+.++-+.|....|++. + ..|.+.++.+...+.++..+...++...|.+.+-|+ .+++.++
T Consensus 6 ~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~ 70 (110)
T 3b5d_A 6 YLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHH
Confidence 44566777788888888851 0 112355567777888899999999999999999999 8999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHhhhheeeEeec
Q 026633 90 SAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (235)
Q Consensus 90 ~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~ 124 (235)
+.+++.+++||++++.++.|+.+++.|++++...+
T Consensus 71 ~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999988765443
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.71 E-value=1.7e-08 Score=80.09 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhch-hhHHHHH
Q 026633 11 LAVVSSAFIGSSFIIKKKGLRKAGANGARAGSGGYGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPL-GALSIIV 89 (235)
Q Consensus 11 lav~sa~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~~~~lv~ 89 (235)
+-+.+.++-+.|..+.|++. . ..+.+.++.|...++++..+...++...|++.+.|+ ..++.++
T Consensus 6 ~Ll~ail~ev~~~~~lK~s~---g------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~ 70 (137)
T 2i68_A 6 YLGGAILAEVIGTTLMKFSE---G------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL 70 (137)
T ss_dssp HHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc---c------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence 34556677788888888862 0 112345567888899999999999999999999999 9999999
Q ss_pred HHHHHHHHhccccccchhhHHHHHhhhheeeEeec
Q 026633 90 SAVLAHFMLNEKLQKMGMLGCLLCVVGSTMIVLHA 124 (235)
Q Consensus 90 ~~~~a~~~l~e~~~~~~~~g~~l~~~G~~~~v~~~ 124 (235)
+.+++.+++||+++..+++|+++++.|++++...+
T Consensus 71 ~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999988775443
No 3
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=26.83 E-value=61 Score=19.61 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=11.3
Q ss_pred cchhHHHHHHH--HHHHHH
Q 026633 49 LEPLWWVGMFT--MIVGEI 65 (235)
Q Consensus 49 ~~~~W~~G~~~--~~~g~~ 65 (235)
|-|+|++|... .+++.+
T Consensus 7 RiPLWlvgtv~G~~vi~~~ 25 (40)
T 3arc_J 7 RIPLWIVATVAGMGVIVIV 25 (40)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred cccEEeeeeehhhhhhhee
Confidence 56999999863 344444
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.54 E-value=4.1e+02 Score=22.15 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=16.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhccch
Q 026633 45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAV 77 (235)
Q Consensus 45 ~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~s 77 (235)
++.+|+|.+|............+..-..+.|..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777776665444333333333344443
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.38 E-value=1.8e+02 Score=16.78 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhccccccc
Q 026633 84 ALSIIVSAVLAHFMLNEKLQKM 105 (235)
Q Consensus 84 ~~~lv~~~~~a~~~l~e~~~~~ 105 (235)
++=++...++...+.+||+.+.
T Consensus 10 giL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4445667788888888888764
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=9.30 E-value=3.3e+02 Score=15.97 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 026633 208 KCIETWIFAMVALTCVITQLNYLN 231 (235)
Q Consensus 208 ~~~~~y~~~~~~~~~~~~Q~~~LN 231 (235)
+....|-++++.+.+.++--||+|
T Consensus 14 RTSLy~GLLlifvlavlFssyffN 37 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhhhhccC
Confidence 345566777777888888888877
No 7
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=7.93 E-value=7.7e+02 Score=19.21 Aligned_cols=21 Identities=14% Similarity=0.517 Sum_probs=13.5
Q ss_pred CCcccccchhHHHHHHHHHHHH
Q 026633 43 GGYGYLLEPLWWVGMFTMIVGE 64 (235)
Q Consensus 43 ~~~~~~~~~~W~~G~~~~~~g~ 64 (235)
...++.|+|. +.|..+...|.
T Consensus 119 G~y~~vRHP~-Y~G~~l~~~g~ 139 (194)
T 4a2n_B 119 GIYKNIRHPM-YAHLWLWVITQ 139 (194)
T ss_dssp STTTTBSSHH-HHHHHHHHHHH
T ss_pred CcchhccCcc-HHHHHHHHHHH
Confidence 4567888897 45655555554
No 8
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=6.24 E-value=1e+03 Score=19.56 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=17.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhc
Q 026633 48 LLEPLWWVGMFTMIVGEIANFVAYIYA 74 (235)
Q Consensus 48 ~~~~~W~~G~~~~~~g~~~~~~al~~a 74 (235)
.+++.| .||.+++.+++.-|.++-++
T Consensus 75 ~~~~~~-~Gm~lfi~SE~~~F~~~f~a 100 (261)
T 1v54_C 75 VQKGLR-YGMILFIISEVLFFTGFFWA 100 (261)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-HHHHHHHHHHHHHHHHHHHH
Confidence 344555 48999989988877665443
No 9
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=5.25 E-value=4.6e+02 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=16.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHH
Q 026633 46 GYLLEPLWWVGMFTMIVGEIANFVA 70 (235)
Q Consensus 46 ~~~~~~~W~~G~~~~~~g~~~~~~a 70 (235)
+|.+.+.|..|+.++.+...-.|..
T Consensus 106 sy~~~~~W~~Gv~l~ll~m~~aF~G 130 (379)
T 1pp9_C 106 SYTFLETWNIGVILLLTVMATAFMG 130 (379)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCcceehhhHHHHHHHHHHHhee
Confidence 3556679999998765544444433
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=5.22 E-value=1.3e+03 Score=19.09 Aligned_cols=21 Identities=38% Similarity=0.820 Sum_probs=12.3
Q ss_pred hhHHHHHHH-HHHHHHHHHHHH
Q 026633 51 PLWWVGMFT-MIVGEIANFVAY 71 (235)
Q Consensus 51 ~~W~~G~~~-~~~g~~~~~~al 71 (235)
|+||.-++. .++..+..++.|
T Consensus 55 p~ww~~~f~~~iv~~~~y~~~y 76 (311)
T 3mk7_C 55 PRWWFLLFIGTLVFGILYLVLY 76 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 778887654 444445555544
Done!