Query 026633
Match_columns 235
No_of_seqs 140 out of 612
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 18:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 25.4 34 0.0025 18.5 2.9 11 49-59 1-11 (34)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 11.3 1.3E+02 0.0092 16.3 3.4 23 209-231 15-37 (37)
3 d1nekd_ f.21.2.2 (D:) Succinat 8.1 1.3E+02 0.0091 20.0 2.9 46 107-154 19-64 (113)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.9 1.5E+02 0.011 14.7 2.4 11 209-219 7-17 (26)
5 d1q90b_ f.21.1.2 (B:) Cytochro 5.1 2.5E+02 0.018 20.9 3.5 36 51-93 113-148 (212)
6 d2p7tc1 f.14.1.1 (C:86-119) Po 4.9 2.3E+02 0.016 14.6 2.1 22 77-99 10-31 (34)
7 d1rh5a_ f.41.1.1 (A:) Preprote 4.7 4.2E+02 0.031 21.5 5.1 69 45-116 103-175 (422)
8 d1ppje2 f.23.12.1 (E:1-69) Iro 4.0 3.6E+02 0.026 16.4 3.0 32 170-202 32-63 (69)
9 d3cx5e2 f.23.12.1 (E:31-86) Ir 3.7 4E+02 0.029 15.5 2.9 31 170-201 22-52 (56)
10 d1s14a_ d.122.1.2 (A:) Topoiso 3.7 1.3E+02 0.0091 21.9 0.5 10 226-235 141-150 (168)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.37 E-value=34 Score=18.47 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.4
Q ss_pred cchhHHHHHHH
Q 026633 49 LEPLWWVGMFT 59 (235)
Q Consensus 49 ~~~~W~~G~~~ 59 (235)
|-|+|++|...
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45999999763
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.27 E-value=1.3e+02 Score=16.26 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 026633 209 CIETWIFAMVALTCVITQLNYLN 231 (235)
Q Consensus 209 ~~~~y~~~~~~~~~~~~Q~~~LN 231 (235)
....|-++++.+.++++--+|+|
T Consensus 15 tsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC
Confidence 44556677777778888888887
No 3
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=8.13 E-value=1.3e+02 Score=19.99 Aligned_cols=46 Identities=7% Similarity=-0.115 Sum_probs=28.0
Q ss_pred hhHHHHHhhhheeeEeecCCccCcCCHHHHHHHhcChhHHHHHHHHHH
Q 026633 107 MLGCLLCVVGSTMIVLHAPLEESLNSVQEIWVLATQPAFLLYVGSVVA 154 (235)
Q Consensus 107 ~~g~~l~~~G~~~~v~~~~~~~~~~~~~~l~~~~~~~~f~~y~~~~~~ 154 (235)
.-+++++.....++...... +..+.|+..+.+.+|..-....+.++
T Consensus 19 vSAv~l~~l~~~~~~~~~~~--~~~~y~~~~~~~~~~~~~il~~l~l~ 64 (113)
T d1nekd_ 19 ATAIVLTLYIIYMVGFFATS--GELTYEVWIGFFASAFTKVFTLLALF 64 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--SSCCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHhChHHHHHHHHHHH
Confidence 44666665554443333333 34577999999999986666554444
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.90 E-value=1.5e+02 Score=14.67 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=7.2
Q ss_pred hHHHHHHHHHH
Q 026633 209 CIETWIFAMVA 219 (235)
Q Consensus 209 ~~~~y~~~~~~ 219 (235)
-|.+|+++..+
T Consensus 7 iw~fw~ffall 17 (26)
T d1rzhh2 7 IYSFWIFLAGL 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47777776655
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.12 E-value=2.5e+02 Score=20.90 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHH
Q 026633 51 PLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVL 93 (235)
Q Consensus 51 ~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~ 93 (235)
..|+.|+.++.+-....+..| +-|-+..+.=...+.
T Consensus 113 ~~W~~Gv~l~~l~m~~aftGY-------~Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 113 LTWVTGVIMAVCTVSFGVTGY-------SLPWDQVGYWAVKIV 148 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HTTCBHHHHHHHHHH
T ss_pred ceehHhHHHHHHHHHHHHhhh-------hcchhhHHHHHHHHH
Confidence 369999988766655555554 456676666544444
No 6
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=4.91 E-value=2.3e+02 Score=14.62 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=13.5
Q ss_pred hhhhchhhHHHHHHHHHHHHHhc
Q 026633 77 VLVTPLGALSIIVSAVLAHFMLN 99 (235)
Q Consensus 77 slV~Pl~~~~lv~~~~~a~~~l~ 99 (235)
..|+.+.+.++++..+ +.||.+
T Consensus 10 vmvagits~glv~aa~-atwfvg 31 (34)
T d2p7tc1 10 VMVAGITSFGLVTAAL-ATWFVG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHH
T ss_pred EEEeccchhhhHHHHH-HHHhhc
Confidence 4566667777777765 445444
No 7
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.73 E-value=4.2e+02 Score=21.46 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=33.3
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhccchhhhchhhHHHHHHHHHH---HHHhccccccchhh-HHHHHhhh
Q 026633 45 YGYLLEPLWWVGMFTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVLA---HFMLNEKLQKMGML-GCLLCVVG 116 (235)
Q Consensus 45 ~~~~~~~~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~~~~lv~~~~~a---~~~l~e~~~~~~~~-g~~l~~~G 116 (235)
++.+.+...+..+.+.+.-......+..+. ...|....-.+..+..+ ..+++|.+|.+.+- |+-+++..
T Consensus 103 r~k~~~~tr~ltl~la~iQa~~~~~~~~~~---~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~GiGnGiSLiI~~ 175 (422)
T d1rh5a_ 103 RALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAA 175 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 445555555666555433322222121121 23343333333333333 34569999997775 66555443
No 8
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.00 E-value=3.6e+02 Score=16.42 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=21.9
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Q 026633 170 TNILIYIGICSVIGSLTVMSVKAIGIAIKLTLE 202 (235)
Q Consensus 170 ~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~~ 202 (235)
|+.+-| .++|..|..++-.+|.++.-+..+++
T Consensus 32 Rk~fsY-l~~g~~~v~~ay~AK~~V~~fvssmS 63 (69)
T d1ppje2 32 RKGFSY-LVTATTTVGVAYAAKNVVSQFVSSMS 63 (69)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hceehh-hhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 346667 45555666677889999887776554
No 9
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.72 E-value=4e+02 Score=15.55 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=20.2
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 026633 170 TNILIYIGICSVIGSLTVMSVKAIGIAIKLTL 201 (235)
Q Consensus 170 ~~~l~~~~~~g~lg~~tvl~aK~~~~~l~~~~ 201 (235)
++.+-|. +.|..|..++-.+|+.++-+..++
T Consensus 22 ~r~fsY~-mvGs~g~~~a~~AKstV~~FlssM 52 (56)
T d3cx5e2 22 GRSYAYF-MVGAMGLLSSAGAKSTVETFISSM 52 (56)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEE-eeehhHHHHHHHHHHHHHHHHHhc
Confidence 3455563 444466677888999998766543
No 10
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=3.71 E-value=1.3e+02 Score=21.85 Aligned_cols=10 Identities=20% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHhcccC
Q 026633 226 QLNYLNMGKS 235 (235)
Q Consensus 226 Q~~~LN~aL~ 235 (235)
|+.|||++|+
T Consensus 141 e~AfLn~GL~ 150 (168)
T d1s14a_ 141 AKAVLCPGVE 150 (168)
T ss_dssp HHHHHSTTCE
T ss_pred HHhhcCCCCE
Done!