BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026634
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQR 125
+ ++ VFD DGTLT+ V DF A+ A+ + AE+ DIL H+ + D
Sbjct: 4 SEIKHWVFDXDGTLTIAVHDFAAIREAL-------SIPAED----DILTHLAALPADESA 52
Query: 126 HAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-- 183
+ + + ER + PG +L L + R G++TRN +E + G+
Sbjct: 53 AKHAWLLEHERDLAQGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADC 112
Query: 184 FSPA--LSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221
F+ A L R+ P KP PG LL + W+V P+ + VGD
Sbjct: 113 FAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPSRXVXVGD 152
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 36/179 (20%)
Query: 69 RGVVFDMDGTLTVPVIDFPAMYRAVLG-----------EDEYKRVKAENPTGIDI----L 113
+ + FD+DGTLT + + R VL + + + T + I
Sbjct: 5 QALXFDIDGTLTNSQPAYTTVXREVLATYGKPFSPAQAQKTFPXAAEQAXTELGIAASEF 64
Query: 114 HHIESWSPDLQRHAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAV 173
H ++ D+ Y D++++ PG L L S+ +R G++T + +
Sbjct: 65 DHFQAQYEDVXASHY-----------DQIELYPGITSLFEQLPSE-LRLGIVTSQRRNEL 112
Query: 174 DL------FHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDD 226
+ F R +T S + + KPDP PLL V P + +GDS+ D+
Sbjct: 113 ESGXRSYPFXXRXAVTIS---ADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDE 168
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 191 EFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233
E + KP P H C VQP + +MVGD+L+ DI N
Sbjct: 171 EQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNA 213
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 191 EFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233
E R KP P + C+ VQP + +MVGD+L+ DI N
Sbjct: 181 EQREEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNA 223
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAEN------PTGIDIL-HHIES 118
T+ + + FD+DGTL + D + L + + +EN G D+L
Sbjct: 21 TQFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQA-SENLVXTWIGNGADVLSQRAVD 79
Query: 119 WSPDLQRHAYQTIAD-----FERQ-----GLDRLQI---MPGTAQLCGFLDSKKIRRGLI 165
W+ + A + + + F+RQ G + I P + L ++ ++
Sbjct: 80 WAC---KQAEKELTEDEFKYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVV 136
Query: 166 TRNIKEAVDLFHNRFGI--TFSPALSREFRP-YKPDPGPLLHICSTWEVQPNEVMMVGDS 222
T + V FGI FS L + P KP P P ++C + + P +++ VGDS
Sbjct: 137 TNKPTKHVQPILTAFGIDHLFSEXLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDS 196
Query: 223 LKD 225
D
Sbjct: 197 QND 199
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 29/175 (16%)
Query: 72 VFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAEN-PTGIDILHHIESWS-----PDLQR 125
+FD+DGTLT V A ++ L AEN P +H S L R
Sbjct: 10 IFDLDGTLTDSVYQNVAAWKEAL--------DAENIPLAXWRIHRKIGXSGGLXLKSLSR 61
Query: 126 HAYQTIAD--FER------QGLDRLQ----IMPGTAQLCGFLDSKKIRRGLITR-NIKEA 172
+I D ER Q +RLQ +PG +L LD + ++ + T I A
Sbjct: 62 ETGXSITDEQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGGIDTA 121
Query: 173 -VDLFHNRFGITFSPALSREFRPY-KPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225
++L + I ++R+ Y KPDP L +E +++GD++ D
Sbjct: 122 TINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWD 176
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLF----HNRFGITFSPALS-REFRPYKPD 198
I P ++ + S+ + GL + ++K D+F NR F LS EF+ KP+
Sbjct: 90 IFPDVLKVLNEVKSQGLEIGLASSSVK--ADIFRALEENRLQGFFDIVLSGEEFKESKPN 147
Query: 199 PGPLLHICSTWEVQPNEVMMVGDSLK 224
P L VQ + +++ DS K
Sbjct: 148 PEIYLTALKQLNVQASRALIIEDSEK 173
>pdb|2OM6|A Chain A, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
pdb|2OM6|B Chain B, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
Length = 235
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIK----EAVDLFHNRFGI------TFSPAL 188
+D ++ GT + F+ + ++ +I N+ L RFG+ TF
Sbjct: 95 VDESLVLEGTKEALQFVKERGLKTAVIG-NVXFWPGSYTRLLLERFGLXEFIDKTF---F 150
Query: 189 SREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDD 226
+ E YKP + +++EV+P E + +GD+ +D
Sbjct: 151 ADEVLSYKPRKEXFEKVLNSFEVKPEESLHIGDTYAED 188
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Query: 68 LRGVVFDMDGTLTVPVIDFP-AMYRAV--LGEDEYKRVKAENPTGIDILHHIESWSPDLQ 124
LR ++FD+DGTL D A+ + + LG +EY G + +E D
Sbjct: 3 LRVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLEKVLKDKF 62
Query: 125 RHAYQTIADFERQGLDRLQIM----PGTAQLCGFLDSKKIRRGLITRNIKE----AVDLF 176
R Y + F + L+ + P L SK + +++ ++E +D+
Sbjct: 63 REEYVEV--FRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDIL 120
Query: 177 HNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225
N G F KP P P+L +P + ++VGD+ D
Sbjct: 121 -NLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDAD 168
>pdb|1MIO|C Chain C, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|A Chain A, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 533
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 145 MPG--TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPL 202
+PG TA+ C + K G++ IK+ V + H G +F R F+ KP+ G
Sbjct: 43 VPGIITARGCAYAGCK----GVVMGPIKDMVHITHGPIGCSFYTWGGRRFKS-KPENGTG 97
Query: 203 L----HICSTWEVQPNEVMMVG-DSLKDDIDVVFNTF 234
L ++ ST ++Q ++++ G + LKD I + F
Sbjct: 98 LNFNEYVFST-DMQESDIVFGGVNKLKDAIHEAYEMF 133
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDI 227
KP P + V+P E +MVGD L DI
Sbjct: 150 KPHPKIFKKALKAFNVKPEEALMVGDRLYSDI 181
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 70 GVVFDMDGTL--TVPVIDFPAMYRAVLG------EDEYKRVKAE-NPTGIDILHHIESWS 120
V+FD DG L T P+ F A R ED ++R+ G+ IL
Sbjct: 3 AVIFDXDGVLXDTEPLY-FEAYRRVAESYGKPYTEDLHRRIXGVPEREGLPILXEALEIK 61
Query: 121 PDLQRHAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRN-IKEAVDL---- 175
L+ + + +R + L+ PG + F+ SK+I+ L T +EA++
Sbjct: 62 DSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRL 121
Query: 176 -FHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222
F + + + KPDP L + V P +V++ DS
Sbjct: 122 DLEKYFDVX---VFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDS 166
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225
+KPDP LL + P EV+ +GDS D
Sbjct: 144 HKPDPEGLLLAIDRLKACPEEVLYIGDSTVD 174
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 12/167 (7%)
Query: 69 RGVVFDMDGTLTVPVIDFP-AMYRAV--LGEDEYKRVKAENPTGIDILHHIESWSPDLQR 125
R ++FD+DGTL D A+ + + LG +EY G + +E D R
Sbjct: 2 RVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLEKVLKDKFR 61
Query: 126 HAYQTIADFERQGLDRLQIM----PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG 181
Y + F + L+ + P L SK + +++ ++E +
Sbjct: 62 EEYVEV--FRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILN 119
Query: 182 IT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225
++ F + + F KP P P+L +P + ++VGD+ D
Sbjct: 120 LSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDAD 166
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 138 GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRP 194
G ++QI P L +K G+IT + R G+ F+ AL E
Sbjct: 100 GRHQVQIFPEVQPTLEIL-AKTFTLGVITNGNADV-----RRLGLADYFAFALCAEDLGI 153
Query: 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDI 227
KPDP P L +V + + VGD DDI
Sbjct: 154 GKPDPAPFLEALRRAKVDASAAVHVGDHPSDDI 186
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 117 ESWSPDLQRHAYQTIADFERQGL 139
+ W PD YQ I DF R+GL
Sbjct: 447 QVWFPDSAFKTYQAIKDFNREGL 469
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 191 EFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225
+ + YKPDP C V PNEV V + D
Sbjct: 156 DLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWD 190
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 191 EFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225
+ + YKPDP C V PNEV V + D
Sbjct: 156 DLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWD 190
>pdb|3DDH|A Chain A, The Structure Of A Putative Haloacid Dehalogenase-like
Family Hydrolase From Bacteroides Thetaiotaomicron
Vpi-5482
pdb|3DDH|B Chain B, The Structure Of A Putative Haloacid Dehalogenase-like
Family Hydrolase From Bacteroides Thetaiotaomicron
Vpi-5482
Length = 234
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 203 LHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232
L + S ++ P+E++ VG+S K DI V +
Sbjct: 164 LRLLSILQIAPSELLXVGNSFKSDIQPVLS 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,218,557
Number of Sequences: 62578
Number of extensions: 277517
Number of successful extensions: 646
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 21
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)