Query 026634
Match_columns 235
No_of_seqs 186 out of 1636
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:36:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11587 putative phosphatase; 100.0 7.3E-27 1.6E-31 184.0 17.4 166 67-233 2-174 (218)
2 PRK13288 pyrophosphatase PpaX; 99.9 1.7E-26 3.8E-31 181.3 15.7 163 67-233 2-174 (214)
3 PLN02770 haloacid dehalogenase 99.9 3.8E-26 8.3E-31 183.1 17.6 168 65-233 19-200 (248)
4 PRK13226 phosphoglycolate phos 99.9 6.1E-26 1.3E-30 179.9 17.1 166 67-233 11-187 (229)
5 PLN03243 haloacid dehalogenase 99.9 1.2E-25 2.6E-30 180.7 17.8 166 67-233 23-201 (260)
6 COG0637 Predicted phosphatase/ 99.9 4.9E-26 1.1E-30 179.1 14.5 165 68-233 2-178 (221)
7 COG0546 Gph Predicted phosphat 99.9 3.5E-25 7.6E-30 174.5 18.1 166 67-233 3-181 (220)
8 PRK10826 2-deoxyglucose-6-phos 99.9 3E-25 6.5E-30 175.3 17.4 167 66-233 5-184 (222)
9 TIGR03351 PhnX-like phosphonat 99.9 5E-25 1.1E-29 173.8 17.8 165 68-233 1-182 (220)
10 PLN02575 haloacid dehalogenase 99.9 6.9E-25 1.5E-29 182.6 18.6 166 67-233 130-308 (381)
11 TIGR01422 phosphonatase phosph 99.9 1E-24 2.2E-29 175.6 17.7 165 68-233 2-193 (253)
12 PRK13478 phosphonoacetaldehyde 99.9 2.1E-24 4.6E-29 174.9 18.4 166 67-233 3-195 (267)
13 PRK13223 phosphoglycolate phos 99.9 2.1E-24 4.6E-29 175.1 18.3 169 64-233 9-193 (272)
14 TIGR01449 PGP_bact 2-phosphogl 99.9 2.2E-24 4.9E-29 169.1 16.6 162 71-233 1-177 (213)
15 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 2.4E-24 5.3E-29 165.3 16.3 163 68-233 1-178 (185)
16 PRK14988 GMP/IMP nucleotidase; 99.9 8.2E-25 1.8E-29 172.7 13.3 93 140-233 90-185 (224)
17 TIGR02253 CTE7 HAD superfamily 99.9 1.9E-24 4.1E-29 170.5 15.1 163 68-233 2-187 (221)
18 PLN02940 riboflavin kinase 99.9 2.8E-24 6.1E-29 181.7 16.7 167 66-233 9-186 (382)
19 PRK13225 phosphoglycolate phos 99.9 6.3E-24 1.4E-28 171.9 17.4 163 67-233 61-231 (273)
20 PRK10725 fructose-1-P/6-phosph 99.9 8.8E-24 1.9E-28 162.6 16.6 164 67-233 4-178 (188)
21 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 8.8E-24 1.9E-28 163.9 16.2 164 69-233 1-197 (197)
22 TIGR01454 AHBA_synth_RP 3-amin 99.9 9.8E-24 2.1E-28 164.6 16.3 157 71-233 1-167 (205)
23 TIGR01990 bPGM beta-phosphoglu 99.9 7.1E-24 1.5E-28 162.7 15.2 161 70-233 1-177 (185)
24 PRK13222 phosphoglycolate phos 99.9 2.1E-23 4.6E-28 165.0 18.2 167 66-233 4-185 (226)
25 TIGR01428 HAD_type_II 2-haloal 99.9 1.4E-23 3E-28 162.9 15.0 92 141-233 90-184 (198)
26 TIGR02252 DREG-2 REG-2-like, H 99.9 5.7E-23 1.2E-27 160.1 16.8 164 69-233 1-197 (203)
27 PRK10563 6-phosphogluconate ph 99.9 3.9E-23 8.5E-28 163.1 15.8 163 67-233 3-178 (221)
28 PF13419 HAD_2: Haloacid dehal 99.9 2.1E-23 4.6E-28 158.0 12.6 160 71-233 1-169 (176)
29 PRK09449 dUMP phosphatase; Pro 99.9 1.4E-22 3.1E-27 160.2 16.0 94 139-233 91-188 (224)
30 TIGR02247 HAD-1A3-hyp Epoxide 99.9 6.3E-23 1.4E-27 160.8 13.7 163 68-233 2-188 (211)
31 TIGR02254 YjjG/YfnB HAD superf 99.9 2.1E-22 4.5E-27 159.1 16.4 165 68-233 1-190 (224)
32 PLN02779 haloacid dehalogenase 99.9 2.1E-22 4.5E-27 164.4 16.5 164 68-233 40-238 (286)
33 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 2.8E-22 6.1E-27 149.4 15.4 148 70-233 1-153 (154)
34 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.2E-22 2.5E-27 156.0 11.1 154 70-233 2-177 (184)
35 PRK06698 bifunctional 5'-methy 99.9 7.1E-22 1.5E-26 171.5 16.5 165 66-233 239-419 (459)
36 PRK10748 flavin mononucleotide 99.9 7.4E-22 1.6E-26 157.4 13.9 88 140-233 110-200 (238)
37 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1.4E-21 3.1E-26 149.5 14.1 90 142-233 84-176 (183)
38 PHA02597 30.2 hypothetical pro 99.9 1.3E-21 2.8E-26 151.7 13.9 156 68-233 2-164 (197)
39 PLN02919 haloacid dehalogenase 99.9 5.3E-21 1.2E-25 179.1 17.7 167 66-233 73-254 (1057)
40 PRK09456 ?-D-glucose-1-phospha 99.9 8.2E-21 1.8E-25 147.5 15.0 90 143-233 84-177 (199)
41 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 4.4E-21 9.6E-26 139.3 11.7 89 143-233 25-123 (132)
42 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 3.7E-22 8E-27 151.9 5.8 84 141-232 88-174 (175)
43 COG1011 Predicted hydrolase (H 99.9 6.3E-21 1.4E-25 151.1 12.8 92 141-233 97-191 (229)
44 TIGR01656 Histidinol-ppas hist 99.9 5.6E-21 1.2E-25 141.3 11.3 90 143-233 27-137 (147)
45 TIGR00338 serB phosphoserine p 99.9 1.2E-20 2.5E-25 148.7 13.6 157 66-233 12-187 (219)
46 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 7.7E-21 1.7E-25 147.7 12.4 164 67-233 3-182 (201)
47 PRK08942 D,D-heptose 1,7-bisph 99.9 8.6E-21 1.9E-25 145.2 11.7 91 142-233 28-139 (181)
48 COG2179 Predicted hydrolase of 99.8 3.2E-21 7E-26 139.6 6.6 85 143-233 46-130 (175)
49 TIGR00213 GmhB_yaeD D,D-heptos 99.8 1.9E-20 4.2E-25 142.6 11.1 91 142-233 25-142 (176)
50 PLN02811 hydrolase 99.8 1.2E-19 2.6E-24 143.1 13.8 158 75-233 1-176 (220)
51 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 1E-19 2.2E-24 136.8 12.1 90 144-233 43-154 (166)
52 PRK11133 serB phosphoserine ph 99.8 1.6E-19 3.5E-24 148.9 13.9 158 65-233 107-283 (322)
53 KOG3085 Predicted hydrolase (H 99.8 1.6E-19 3.4E-24 140.6 12.1 93 140-233 110-205 (237)
54 TIGR01261 hisB_Nterm histidino 99.8 1.1E-19 2.3E-24 135.9 10.5 91 142-233 28-139 (161)
55 KOG2914 Predicted haloacid-hal 99.8 1.5E-18 3.3E-23 134.6 15.8 166 67-233 9-188 (222)
56 PRK09552 mtnX 2-hydroxy-3-keto 99.8 2E-18 4.3E-23 136.0 14.7 155 68-233 3-179 (219)
57 PLN02954 phosphoserine phospha 99.8 2.5E-18 5.3E-23 135.9 13.8 154 67-232 11-187 (224)
58 PRK06769 hypothetical protein; 99.8 1.3E-18 2.8E-23 132.0 10.9 91 142-233 27-129 (173)
59 TIGR01691 enolase-ppase 2,3-di 99.8 2E-17 4.3E-22 129.5 16.1 101 131-233 83-188 (220)
60 TIGR01681 HAD-SF-IIIC HAD-supe 99.8 1.5E-18 3.2E-23 125.1 8.1 87 143-233 29-127 (128)
61 PRK13582 thrH phosphoserine ph 99.7 4.4E-17 9.5E-22 127.0 13.1 91 140-232 65-162 (205)
62 TIGR01672 AphA HAD superfamily 99.7 4.6E-17 1E-21 128.4 13.1 131 69-233 64-203 (237)
63 TIGR01685 MDP-1 magnesium-depe 99.7 3.2E-18 6.9E-23 128.8 6.1 93 140-233 42-149 (174)
64 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 1.4E-16 3E-21 122.4 14.3 88 142-233 71-181 (188)
65 TIGR01668 YqeG_hyp_ppase HAD s 99.7 3E-17 6.6E-22 124.1 10.3 85 143-233 43-128 (170)
66 TIGR01488 HAD-SF-IB Haloacid D 99.7 8.4E-17 1.8E-21 122.5 10.9 92 141-233 71-177 (177)
67 cd01427 HAD_like Haloacid deha 99.7 9.1E-17 2E-21 116.4 10.0 91 141-232 22-131 (139)
68 COG0560 SerB Phosphoserine pho 99.7 2.3E-16 5E-21 123.0 12.3 155 67-231 4-177 (212)
69 TIGR02726 phenyl_P_delta pheny 99.7 1.8E-17 3.9E-22 124.5 5.7 75 150-233 41-117 (169)
70 TIGR01670 YrbI-phosphatas 3-de 99.7 1.9E-17 4.2E-22 123.2 5.5 76 151-233 36-111 (154)
71 KOG3109 Haloacid dehalogenase- 99.7 3.9E-16 8.4E-21 117.9 11.4 162 67-233 14-197 (244)
72 PRK05446 imidazole glycerol-ph 99.7 2.9E-16 6.2E-21 130.4 11.8 93 140-233 27-140 (354)
73 TIGR02137 HSK-PSP phosphoserin 99.7 1.1E-15 2.3E-20 118.7 13.5 149 69-233 2-163 (203)
74 TIGR03333 salvage_mtnX 2-hydro 99.7 5.1E-16 1.1E-20 121.9 11.6 92 141-233 68-175 (214)
75 TIGR01686 FkbH FkbH-like domai 99.7 2.3E-16 5E-21 131.0 10.1 88 143-235 31-124 (320)
76 PF00702 Hydrolase: haloacid d 99.7 3.5E-16 7.5E-21 122.5 10.2 89 142-233 126-214 (215)
77 smart00577 CPDc catalytic doma 99.7 1.1E-16 2.4E-21 118.3 6.3 87 141-232 43-133 (148)
78 TIGR01663 PNK-3'Pase polynucle 99.7 6.8E-16 1.5E-20 134.1 11.3 88 144-232 198-302 (526)
79 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.6 2.7E-15 5.8E-20 116.7 12.7 90 143-233 87-190 (202)
80 PRK09484 3-deoxy-D-manno-octul 99.6 5.8E-16 1.3E-20 118.5 6.1 77 150-233 55-131 (183)
81 PF09419 PGP_phosphatase: Mito 99.6 1.5E-15 3.3E-20 112.8 8.0 129 22-233 11-156 (168)
82 PHA02530 pseT polynucleotide k 99.6 4E-15 8.8E-20 122.7 9.0 91 142-233 186-288 (300)
83 COG0241 HisB Histidinol phosph 99.6 1.9E-14 4.1E-19 107.9 11.7 116 68-233 5-141 (181)
84 PRK11009 aphA acid phosphatase 99.6 1.7E-14 3.6E-19 113.8 11.3 86 139-233 110-203 (237)
85 PRK11590 hypothetical protein; 99.6 9.7E-14 2.1E-18 108.7 14.6 90 142-232 94-194 (211)
86 TIGR01544 HAD-SF-IE haloacid d 99.5 4.2E-13 9E-18 107.7 11.9 92 141-233 119-230 (277)
87 KOG1615 Phosphoserine phosphat 99.5 3.9E-13 8.4E-18 99.9 10.5 155 68-230 16-189 (227)
88 PF12710 HAD: haloacid dehalog 99.5 4.3E-13 9.3E-18 103.2 10.3 84 146-231 92-192 (192)
89 PRK08238 hypothetical protein; 99.5 1.7E-12 3.6E-17 112.6 14.1 145 69-233 11-158 (479)
90 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.4 1.6E-13 3.4E-18 110.6 6.5 89 145-233 122-216 (257)
91 PF08645 PNK3P: Polynucleotide 99.4 4.3E-13 9.4E-18 100.0 7.4 91 143-233 28-148 (159)
92 TIGR01452 PGP_euk phosphoglyco 99.4 3.9E-13 8.4E-18 109.7 6.8 89 144-233 144-239 (279)
93 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.4 3.3E-12 7.1E-17 102.5 11.2 40 194-233 176-215 (249)
94 COG1778 Low specificity phosph 99.4 3.6E-13 7.9E-18 96.8 4.7 74 152-232 44-117 (170)
95 COG0647 NagD Predicted sugar p 99.4 5E-12 1.1E-16 101.2 11.6 40 194-233 188-227 (269)
96 TIGR01545 YfhB_g-proteo haloac 99.4 1.9E-11 4.1E-16 95.5 14.4 89 142-231 93-192 (210)
97 PF06888 Put_Phosphatase: Puta 99.4 6.4E-12 1.4E-16 98.7 11.1 93 140-233 68-188 (234)
98 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.4 2E-12 4.3E-17 103.4 8.3 84 142-230 23-111 (242)
99 PTZ00445 p36-lilke protein; Pr 99.4 2.4E-12 5.2E-17 97.9 7.8 90 143-233 75-197 (219)
100 TIGR01533 lipo_e_P4 5'-nucleot 99.3 1.9E-11 4.1E-16 98.1 12.3 83 141-230 116-204 (266)
101 PRK10444 UMP phosphatase; Prov 99.3 5.9E-12 1.3E-16 100.7 9.3 40 194-233 172-211 (248)
102 TIGR01684 viral_ppase viral ph 99.3 2.2E-11 4.9E-16 97.5 8.7 56 145-200 148-206 (301)
103 PRK10530 pyridoxal phosphate ( 99.3 2.2E-11 4.7E-16 99.0 8.4 88 145-233 139-234 (272)
104 PF12689 Acid_PPase: Acid Phos 99.2 1.5E-11 3.2E-16 91.9 4.0 92 140-232 42-142 (169)
105 PHA03398 viral phosphatase sup 99.2 1.6E-10 3.4E-15 92.8 9.9 82 145-226 150-265 (303)
106 TIGR02251 HIF-SF_euk Dullard-l 99.2 5.6E-11 1.2E-15 89.1 6.8 86 141-231 40-129 (162)
107 PRK01158 phosphoglycolate phos 99.2 9E-11 2E-15 93.0 7.9 71 162-233 118-192 (230)
108 TIGR01487 SPP-like sucrose-pho 99.1 6.3E-10 1.4E-14 87.4 9.4 68 163-233 111-182 (215)
109 COG4359 Uncharacterized conser 99.1 4.5E-09 9.8E-14 77.8 11.7 88 140-232 70-177 (220)
110 COG0561 Cof Predicted hydrolas 99.0 2.1E-09 4.6E-14 87.0 9.2 37 194-231 186-222 (264)
111 PRK10513 sugar phosphate phosp 99.0 2.3E-09 5E-14 87.0 9.1 38 195-233 194-231 (270)
112 PLN02645 phosphoglycolate phos 99.0 3.7E-09 8.1E-14 87.6 10.2 80 143-231 44-128 (311)
113 TIGR01482 SPP-subfamily Sucros 99.0 1.4E-10 3.1E-15 91.6 1.6 71 162-233 110-184 (225)
114 COG4229 Predicted enolase-phos 99.0 2.6E-08 5.6E-13 73.7 12.9 91 141-233 101-196 (229)
115 KOG3120 Predicted haloacid deh 99.0 4.8E-09 1E-13 79.9 9.2 91 140-231 81-199 (256)
116 PRK15126 thiamin pyrimidine py 99.0 3.9E-09 8.5E-14 85.8 9.1 37 195-232 186-222 (272)
117 TIGR01460 HAD-SF-IIA Haloacid 98.9 3.3E-09 7.1E-14 84.5 8.0 40 194-233 186-226 (236)
118 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 4.9E-10 1.1E-14 89.6 3.1 88 145-233 140-233 (242)
119 PRK10976 putative hydrolase; P 98.9 5.9E-09 1.3E-13 84.5 9.4 36 196-232 189-224 (266)
120 PRK00192 mannosyl-3-phosphogly 98.9 5.4E-09 1.2E-13 85.1 8.9 76 154-233 143-226 (273)
121 PF13344 Hydrolase_6: Haloacid 98.9 1.5E-08 3.2E-13 69.7 7.6 72 143-223 14-90 (101)
122 TIGR02244 HAD-IG-Ncltidse HAD 98.8 1.8E-08 3.9E-13 83.6 8.9 91 141-231 182-312 (343)
123 PF08282 Hydrolase_3: haloacid 98.8 1.8E-08 3.9E-13 80.4 8.6 31 201-232 190-220 (254)
124 TIGR01485 SPP_plant-cyano sucr 98.8 1.4E-08 3E-13 81.5 7.2 75 157-232 117-201 (249)
125 KOG3040 Predicted sugar phosph 98.8 3.9E-08 8.4E-13 74.4 8.2 40 194-233 179-218 (262)
126 TIGR02463 MPGP_rel mannosyl-3- 98.8 6.7E-08 1.4E-12 76.1 10.1 37 195-232 177-213 (221)
127 smart00775 LNS2 LNS2 domain. T 98.8 6.2E-08 1.3E-12 72.2 9.3 88 143-231 27-136 (157)
128 COG4996 Predicted phosphatase 98.8 1.6E-08 3.6E-13 70.6 5.3 77 141-223 39-126 (164)
129 TIGR01456 CECR5 HAD-superfamil 98.7 4.2E-07 9.1E-12 75.7 13.3 40 194-233 231-283 (321)
130 TIGR02250 FCP1_euk FCP1-like p 98.7 7.7E-08 1.7E-12 71.5 7.8 77 141-223 56-137 (156)
131 TIGR01484 HAD-SF-IIB HAD-super 98.7 2.1E-07 4.5E-12 72.4 10.5 39 194-233 160-198 (204)
132 TIGR00099 Cof-subfamily Cof su 98.7 1.1E-07 2.5E-12 76.6 9.0 38 195-233 186-223 (256)
133 PF11019 DUF2608: Protein of u 98.7 7.5E-07 1.6E-11 71.4 13.5 93 141-234 79-198 (252)
134 PF13242 Hydrolase_like: HAD-h 98.7 2.2E-08 4.7E-13 65.1 3.8 40 194-233 2-41 (75)
135 PF03767 Acid_phosphat_B: HAD 98.7 6E-08 1.3E-12 76.7 6.5 85 142-229 114-207 (229)
136 TIGR02471 sucr_syn_bact_C sucr 98.7 4.9E-08 1.1E-12 77.8 6.1 74 159-233 112-194 (236)
137 TIGR01675 plant-AP plant acid 98.6 2.8E-07 6E-12 72.3 9.2 86 141-230 118-212 (229)
138 KOG2882 p-Nitrophenyl phosphat 98.6 3.9E-07 8.5E-12 73.0 10.1 40 194-233 222-261 (306)
139 TIGR01525 ATPase-IB_hvy heavy 98.6 8.8E-08 1.9E-12 85.5 6.9 81 142-233 383-466 (556)
140 TIGR01511 ATPase-IB1_Cu copper 98.6 1.3E-07 2.8E-12 84.4 7.1 81 143-233 405-485 (562)
141 TIGR01680 Veg_Stor_Prot vegeta 98.6 5.9E-07 1.3E-11 71.7 9.7 87 141-230 143-238 (275)
142 TIGR01512 ATPase-IB2_Cd heavy 98.5 1.7E-07 3.6E-12 83.4 6.9 81 142-233 361-444 (536)
143 PF03031 NIF: NLI interacting 98.5 3E-07 6.6E-12 68.6 5.2 80 141-223 34-116 (159)
144 PF05116 S6PP: Sucrose-6F-phos 98.4 1.6E-06 3.4E-11 69.6 9.4 36 195-231 163-198 (247)
145 PRK10187 trehalose-6-phosphate 98.4 3.3E-06 7.1E-11 68.5 10.8 35 197-232 174-208 (266)
146 PLN02645 phosphoglycolate phos 98.4 1.1E-07 2.4E-12 78.8 2.2 83 151-233 178-267 (311)
147 TIGR01689 EcbF-BcbF capsule bi 98.3 2.4E-06 5.2E-11 60.9 7.2 47 143-189 24-85 (126)
148 PLN02177 glycerol-3-phosphate 98.3 3.5E-05 7.7E-10 67.5 15.8 151 68-231 22-205 (497)
149 PTZ00174 phosphomannomutase; P 98.3 2.2E-06 4.8E-11 68.7 7.2 35 144-178 23-57 (247)
150 PRK03669 mannosyl-3-phosphogly 98.3 2.7E-06 5.8E-11 69.2 7.0 38 145-182 26-63 (271)
151 PRK10671 copA copper exporting 98.3 2.9E-06 6.4E-11 79.3 8.0 82 143-233 650-731 (834)
152 TIGR00685 T6PP trehalose-phosp 98.2 1.5E-05 3.2E-10 63.9 10.7 36 197-233 167-202 (244)
153 COG3882 FkbH Predicted enzyme 98.2 3.9E-06 8.4E-11 71.3 7.3 88 143-234 255-347 (574)
154 COG4087 Soluble P-type ATPase 98.2 1.2E-05 2.6E-10 56.6 8.3 84 141-232 28-111 (152)
155 COG2503 Predicted secreted aci 98.2 2E-05 4.3E-10 61.4 10.1 82 141-229 120-208 (274)
156 PLN02382 probable sucrose-phos 98.2 3.2E-05 6.9E-10 66.6 12.2 37 195-232 173-212 (413)
157 KOG2961 Predicted hydrolase (H 98.2 2.1E-05 4.6E-10 56.7 9.0 81 144-232 62-158 (190)
158 PLN02887 hydrolase family prot 98.2 5.2E-06 1.1E-10 74.0 7.2 39 144-182 326-364 (580)
159 TIGR01522 ATPase-IIA2_Ca golgi 98.2 5.2E-06 1.1E-10 78.1 7.3 90 143-233 528-636 (884)
160 TIGR02461 osmo_MPG_phos mannos 98.1 5.5E-06 1.2E-10 65.5 6.2 40 144-183 16-55 (225)
161 PF06941 NT5C: 5' nucleotidase 98.1 8E-06 1.7E-10 62.9 6.4 97 69-171 2-101 (191)
162 PRK12702 mannosyl-3-phosphogly 98.1 8.6E-06 1.9E-10 65.9 6.5 40 144-183 19-58 (302)
163 COG3700 AphA Acid phosphatase 98.0 1.6E-05 3.6E-10 58.9 6.4 137 66-233 61-203 (237)
164 PF05152 DUF705: Protein of un 98.0 4.7E-05 1E-09 60.8 9.0 84 143-226 142-259 (297)
165 PF08235 LNS2: LNS2 (Lipin/Ned 98.0 7.7E-05 1.7E-09 55.0 9.4 38 143-180 27-67 (157)
166 TIGR02245 HAD_IIID1 HAD-superf 97.9 7.7E-05 1.7E-09 57.3 8.9 76 143-223 45-139 (195)
167 TIGR01486 HAD-SF-IIB-MPGP mann 97.9 2.1E-05 4.5E-10 63.4 5.9 37 147-183 20-56 (256)
168 PRK11033 zntA zinc/cadmium/mer 97.9 5E-05 1.1E-09 70.2 9.0 80 143-233 568-647 (741)
169 KOG2134 Polynucleotide kinase 97.9 2.6E-05 5.7E-10 64.6 5.7 81 143-223 104-201 (422)
170 PRK14502 bifunctional mannosyl 97.7 0.00011 2.3E-09 66.1 7.3 38 146-183 436-473 (694)
171 COG2217 ZntA Cation transport 97.7 0.00013 2.8E-09 66.5 7.7 78 143-230 537-615 (713)
172 PRK14501 putative bifunctional 97.7 0.0004 8.8E-09 64.2 10.9 30 200-232 660-689 (726)
173 TIGR01116 ATPase-IIA1_Ca sarco 97.7 0.00013 2.9E-09 69.0 7.7 90 143-233 537-649 (917)
174 TIGR01497 kdpB K+-transporting 97.6 0.00029 6.3E-09 64.0 8.7 81 143-232 446-526 (675)
175 PF05761 5_nucleotid: 5' nucle 97.6 0.00044 9.6E-09 59.8 9.2 94 140-233 180-315 (448)
176 PRK01122 potassium-transportin 97.6 0.00039 8.4E-09 63.3 9.0 80 143-231 445-524 (679)
177 KOG2630 Enolase-phosphatase E- 97.5 0.0017 3.6E-08 50.4 10.6 89 142-232 122-215 (254)
178 PRK14010 potassium-transportin 97.5 0.00054 1.2E-08 62.3 9.0 80 143-231 441-520 (673)
179 PLN02205 alpha,alpha-trehalose 97.5 0.0011 2.4E-08 62.0 11.0 36 197-233 762-800 (854)
180 PRK10517 magnesium-transportin 97.5 0.00025 5.3E-09 66.9 6.5 89 143-232 550-655 (902)
181 PLN02423 phosphomannomutase 97.4 0.0005 1.1E-08 55.1 6.7 34 144-178 25-58 (245)
182 PLN02499 glycerol-3-phosphate 97.4 0.0062 1.3E-07 53.0 13.0 107 68-183 8-133 (498)
183 TIGR01517 ATPase-IIB_Ca plasma 97.3 0.00063 1.4E-08 64.7 7.1 89 143-232 579-686 (941)
184 TIGR01524 ATPase-IIIB_Mg magne 97.3 0.00068 1.5E-08 63.9 7.1 89 143-232 515-620 (867)
185 PRK15122 magnesium-transportin 97.3 0.00049 1.1E-08 65.0 6.1 89 143-232 550-655 (903)
186 TIGR01647 ATPase-IIIA_H plasma 97.3 0.0005 1.1E-08 63.8 5.6 88 143-232 442-552 (755)
187 COG3769 Predicted hydrolase (H 97.2 0.0014 2.9E-08 50.7 6.3 36 148-183 28-63 (274)
188 KOG0207 Cation transport ATPas 97.1 0.0015 3.3E-08 59.9 7.4 78 143-229 723-800 (951)
189 TIGR01523 ATPase-IID_K-Na pota 97.1 0.0017 3.6E-08 62.4 7.4 89 143-232 646-763 (1053)
190 COG4030 Uncharacterized protei 97.1 0.015 3.2E-07 45.3 11.1 42 141-183 81-122 (315)
191 COG5663 Uncharacterized conser 97.1 0.0013 2.8E-08 48.5 5.0 48 126-174 55-102 (194)
192 COG0474 MgtA Cation transport 97.0 0.003 6.4E-08 59.9 7.9 89 143-232 547-656 (917)
193 TIGR01494 ATPase_P-type ATPase 96.7 0.0079 1.7E-07 53.3 8.2 78 143-232 347-424 (499)
194 PLN03017 trehalose-phosphatase 96.7 0.004 8.7E-08 52.4 5.9 36 143-179 133-168 (366)
195 TIGR01452 PGP_euk phosphoglyco 96.7 0.0088 1.9E-07 48.9 7.7 73 142-222 17-94 (279)
196 TIGR01106 ATPase-IIC_X-K sodiu 96.5 0.0069 1.5E-07 58.1 6.9 41 143-183 568-608 (997)
197 PLN02151 trehalose-phosphatase 96.4 0.0068 1.5E-07 50.9 5.4 39 143-182 120-158 (354)
198 COG5610 Predicted hydrolase (H 96.4 0.016 3.6E-07 49.5 7.4 91 143-233 97-194 (635)
199 TIGR01657 P-ATPase-V P-type AT 96.3 0.018 4E-07 55.6 8.3 41 143-183 656-696 (1054)
200 PLN02580 trehalose-phosphatase 96.2 0.014 3.1E-07 49.6 6.3 40 142-182 140-179 (384)
201 KOG4549 Magnesium-dependent ph 96.2 0.036 7.8E-07 39.0 7.0 82 141-227 42-135 (144)
202 PRK03669 mannosyl-3-phosphogly 96.2 0.0055 1.2E-07 49.8 3.6 38 194-232 184-224 (271)
203 COG4850 Uncharacterized conser 96.1 0.085 1.8E-06 43.3 9.8 84 141-229 194-293 (373)
204 TIGR01486 HAD-SF-IIB-MPGP mann 96.0 0.0079 1.7E-07 48.4 3.7 38 194-232 173-212 (256)
205 PLN02887 hydrolase family prot 95.9 0.0067 1.4E-07 54.5 3.3 38 194-232 504-541 (580)
206 TIGR01652 ATPase-Plipid phosph 95.7 0.036 7.9E-07 53.7 7.6 41 143-183 631-671 (1057)
207 COG1877 OtsB Trehalose-6-phosp 95.7 0.035 7.7E-07 44.8 6.2 42 142-183 39-81 (266)
208 KOG2470 Similar to IMP-GMP spe 95.7 0.036 7.8E-07 45.9 6.2 86 144-229 241-362 (510)
209 PF06189 5-nucleotidase: 5'-nu 95.5 0.092 2E-06 41.9 7.8 77 146-234 167-252 (264)
210 PF05822 UMPH-1: Pyrimidine 5' 95.5 0.032 6.9E-07 44.4 5.3 93 140-233 87-198 (246)
211 KOG1618 Predicted phosphatase 95.4 0.043 9.3E-07 44.9 5.8 41 143-183 51-99 (389)
212 KOG3189 Phosphomannomutase [Li 95.4 0.046 1E-06 41.7 5.6 45 143-191 28-76 (252)
213 KOG0202 Ca2+ transporting ATPa 95.3 0.058 1.3E-06 49.7 6.8 88 143-231 584-694 (972)
214 COG2216 KdpB High-affinity K+ 95.3 0.06 1.3E-06 47.0 6.5 76 144-229 448-524 (681)
215 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.0 0.029 6.3E-07 45.3 3.8 46 144-189 22-72 (257)
216 PRK10444 UMP phosphatase; Prov 94.8 0.11 2.4E-06 41.7 6.6 81 143-223 17-118 (248)
217 PLN03063 alpha,alpha-trehalose 94.5 0.053 1.1E-06 50.8 4.5 41 143-183 532-573 (797)
218 TIGR02461 osmo_MPG_phos mannos 94.4 0.045 9.7E-07 43.3 3.4 38 195-233 179-218 (225)
219 PLN03064 alpha,alpha-trehalose 93.8 0.16 3.5E-06 48.2 6.2 41 143-183 622-663 (934)
220 COG4502 5'(3')-deoxyribonucleo 93.5 0.039 8.5E-07 39.6 1.3 84 68-168 3-92 (180)
221 PF02358 Trehalose_PPase: Treh 93.1 0.086 1.9E-06 41.9 3.0 38 142-179 18-56 (235)
222 KOG2116 Protein involved in pl 93.0 0.091 2E-06 47.0 3.2 26 144-169 559-584 (738)
223 KOG3128 Uncharacterized conser 92.8 0.43 9.3E-06 38.0 6.3 91 141-232 136-246 (298)
224 PLN03190 aminophospholipid tra 92.7 0.63 1.4E-05 45.7 8.6 40 143-182 726-765 (1178)
225 COG5083 SMP2 Uncharacterized p 91.9 0.2 4.4E-06 42.8 3.7 25 145-169 405-429 (580)
226 PRK00192 mannosyl-3-phosphogly 91.2 0.35 7.6E-06 39.3 4.5 41 143-183 21-61 (273)
227 TIGR01460 HAD-SF-IIA Haloacid 91.2 1.2 2.6E-05 35.4 7.4 49 142-190 13-67 (236)
228 KOG1605 TFIIF-interacting CTD 90.9 0.027 5.8E-07 45.3 -2.3 73 142-223 130-211 (262)
229 PRK14502 bifunctional mannosyl 90.7 1.5 3.2E-05 40.3 8.1 38 194-232 610-649 (694)
230 TIGR02463 MPGP_rel mannosyl-3- 90.5 0.52 1.1E-05 36.8 4.7 37 147-183 20-56 (221)
231 PF06437 ISN1: IMP-specific 5' 89.6 1 2.2E-05 38.1 5.8 16 67-82 146-161 (408)
232 PRK01158 phosphoglycolate phos 88.7 0.88 1.9E-05 35.7 4.8 41 143-183 20-60 (230)
233 PTZ00174 phosphomannomutase; P 88.3 0.46 9.9E-06 38.0 2.9 34 194-232 185-222 (247)
234 KOG0204 Calcium transporting A 88.0 2.1 4.5E-05 40.1 7.0 41 143-183 647-687 (1034)
235 PRK10530 pyridoxal phosphate ( 87.4 1.1 2.3E-05 36.2 4.6 41 143-183 20-60 (272)
236 PLN02423 phosphomannomutase 87.0 0.58 1.3E-05 37.5 2.8 32 194-231 186-221 (245)
237 TIGR01482 SPP-subfamily Sucros 86.6 1.2 2.7E-05 34.7 4.5 41 143-183 15-55 (225)
238 PRK12702 mannosyl-3-phosphogly 86.4 6.5 0.00014 32.4 8.5 77 154-232 142-244 (302)
239 KOG2882 p-Nitrophenyl phosphat 85.9 3.5 7.5E-05 33.8 6.6 43 141-183 36-81 (306)
240 KOG0323 TFIIF-interacting CTD 83.1 2.5 5.5E-05 38.4 5.2 51 141-192 199-253 (635)
241 KOG2832 TFIIF-interacting CTD 83.0 6.8 0.00015 33.1 7.2 76 143-223 214-293 (393)
242 TIGR01658 EYA-cons_domain eyes 82.8 4.6 9.9E-05 32.2 5.9 37 196-233 213-249 (274)
243 PF04413 Glycos_transf_N: 3-De 81.2 3.2 7E-05 31.7 4.5 69 150-227 109-184 (186)
244 TIGR01485 SPP_plant-cyano sucr 80.8 2.7 5.9E-05 33.5 4.2 47 143-189 21-68 (249)
245 KOG2469 IMP-GMP specific 5'-nu 80.2 8.1 0.00018 33.1 6.8 83 145-227 200-318 (424)
246 COG0731 Fe-S oxidoreductases [ 79.6 4 8.6E-05 33.6 4.7 38 141-178 90-128 (296)
247 TIGR01456 CECR5 HAD-superfamil 75.8 4.9 0.00011 33.5 4.5 43 141-183 14-64 (321)
248 PF04312 DUF460: Protein of un 74.6 15 0.00033 26.5 6.0 36 147-182 64-101 (138)
249 PLN02580 trehalose-phosphatase 73.5 4.3 9.4E-05 34.8 3.6 37 195-232 299-338 (384)
250 TIGR02471 sucr_syn_bact_C sucr 70.6 8.9 0.00019 30.2 4.7 39 150-189 22-61 (236)
251 KOG0210 P-type ATPase [Inorgan 69.6 9.7 0.00021 35.2 4.9 37 143-179 658-694 (1051)
252 TIGR02468 sucrsPsyn_pln sucros 65.0 19 0.00041 35.2 6.2 57 171-228 924-988 (1050)
253 PF12261 T_hemolysin: Thermost 64.8 26 0.00056 26.7 5.8 37 149-187 106-142 (179)
254 PF13911 AhpC-TSA_2: AhpC/TSA 62.8 27 0.00059 24.0 5.4 39 150-189 4-42 (115)
255 PRK00994 F420-dependent methyl 62.5 56 0.0012 26.1 7.3 61 158-223 30-97 (277)
256 PRK13762 tRNA-modifying enzyme 62.0 15 0.00032 30.8 4.5 29 143-171 142-170 (322)
257 PLN02588 glycerol-3-phosphate 61.5 1E+02 0.0023 27.6 9.6 29 154-183 141-170 (525)
258 PF10307 DUF2410: Hypothetical 61.0 76 0.0016 24.6 8.4 87 146-234 57-153 (197)
259 PRK10076 pyruvate formate lyas 61.0 21 0.00046 27.9 5.0 39 143-181 50-91 (213)
260 KOG0209 P-type ATPase [Inorgan 60.2 28 0.00062 33.0 6.1 43 141-183 673-715 (1160)
261 PRK01045 ispH 4-hydroxy-3-meth 59.0 70 0.0015 26.5 7.8 66 150-223 44-123 (298)
262 KOG0780 Signal recognition par 58.7 92 0.002 27.1 8.4 46 184-230 184-230 (483)
263 PF09949 DUF2183: Uncharacteri 58.3 55 0.0012 22.2 6.0 33 198-232 51-83 (100)
264 PF06437 ISN1: IMP-specific 5' 57.6 23 0.0005 30.3 4.8 41 183-223 333-379 (408)
265 PF14336 DUF4392: Domain of un 57.0 36 0.00077 28.1 5.8 87 144-231 61-192 (291)
266 TIGR02244 HAD-IG-Ncltidse HAD 56.6 7.2 0.00016 32.9 1.7 20 65-84 9-28 (343)
267 cd05008 SIS_GlmS_GlmD_1 SIS (S 56.2 17 0.00036 25.3 3.4 32 144-175 58-89 (126)
268 TIGR02826 RNR_activ_nrdG3 anae 55.6 22 0.00047 26.1 4.0 35 145-179 74-109 (147)
269 cd05014 SIS_Kpsf KpsF-like pro 55.4 13 0.00028 26.0 2.7 32 144-175 59-90 (128)
270 KOG0208 Cation transport ATPas 55.2 53 0.0011 31.9 7.1 41 143-183 705-745 (1140)
271 PF00578 AhpC-TSA: AhpC/TSA fa 55.2 27 0.00059 23.9 4.4 43 146-188 46-88 (124)
272 KOG3107 Predicted haloacid deh 55.1 1E+02 0.0022 26.5 8.1 34 198-233 410-443 (468)
273 KOG1618 Predicted phosphatase 54.8 9 0.0002 31.9 1.9 38 194-231 269-315 (389)
274 COG0378 HypB Ni2+-binding GTPa 54.6 1E+02 0.0022 24.0 7.8 72 149-223 31-106 (202)
275 COG1568 Predicted methyltransf 54.6 94 0.002 25.7 7.5 46 142-189 45-94 (354)
276 cd03017 PRX_BCP Peroxiredoxin 53.3 76 0.0016 22.2 7.4 40 147-186 45-84 (140)
277 TIGR00216 ispH_lytB (E)-4-hydr 52.5 1E+02 0.0023 25.3 7.7 50 166-223 73-123 (280)
278 COG1225 Bcp Peroxiredoxin [Pos 52.2 68 0.0015 23.8 6.1 40 148-187 53-92 (157)
279 PF03332 PMM: Eukaryotic phosp 51.7 30 0.00065 27.2 4.3 42 148-190 1-44 (220)
280 COG3769 Predicted hydrolase (H 51.4 28 0.00061 27.5 4.1 79 146-231 137-226 (274)
281 PF02606 LpxK: Tetraacyldisacc 50.9 70 0.0015 26.9 6.7 75 145-231 51-145 (326)
282 PRK13717 conjugal transfer pro 50.6 34 0.00073 24.3 4.0 14 67-80 44-57 (128)
283 TIGR02495 NrdG2 anaerobic ribo 50.5 36 0.00077 25.7 4.7 29 143-171 74-102 (191)
284 PF06014 DUF910: Bacterial pro 50.2 10 0.00023 23.2 1.3 25 202-231 7-31 (62)
285 cd05710 SIS_1 A subgroup of th 49.6 22 0.00047 24.8 3.1 31 144-174 59-89 (120)
286 TIGR03365 Bsubt_queE 7-cyano-7 49.3 18 0.0004 28.7 3.0 28 144-171 85-112 (238)
287 PRK03692 putative UDP-N-acetyl 49.2 77 0.0017 25.4 6.5 11 194-204 165-175 (243)
288 KOG4388 Hormone-sensitive lipa 49.0 44 0.00095 30.5 5.3 63 162-228 408-483 (880)
289 PF09269 DUF1967: Domain of un 48.2 17 0.00037 22.8 2.1 21 202-222 45-65 (69)
290 PF04273 DUF442: Putative phos 47.8 91 0.002 21.5 6.8 66 150-219 18-92 (110)
291 KOG0206 P-type ATPase [General 47.8 25 0.00054 34.7 4.0 40 143-182 651-690 (1151)
292 TIGR02468 sucrsPsyn_pln sucros 46.7 55 0.0012 32.1 6.0 31 159-189 804-837 (1050)
293 PF02358 Trehalose_PPase: Treh 46.4 18 0.0004 28.5 2.5 37 195-232 163-202 (235)
294 TIGR03127 RuMP_HxlB 6-phospho 45.7 25 0.00054 26.3 3.1 32 144-175 84-115 (179)
295 cd05017 SIS_PGI_PMI_1 The memb 45.4 45 0.00097 23.1 4.2 37 144-182 55-91 (119)
296 COG0854 PdxJ Pyridoxal phospha 45.3 1.4E+02 0.003 23.7 6.9 49 144-193 109-157 (243)
297 PF02593 dTMP_synthase: Thymid 45.0 1.1E+02 0.0023 24.2 6.5 71 143-216 59-137 (217)
298 KOG2469 IMP-GMP specific 5'-nu 44.7 13 0.00028 31.9 1.5 19 66-84 25-43 (424)
299 PF01380 SIS: SIS domain SIS d 44.6 34 0.00074 23.7 3.5 33 144-176 65-97 (131)
300 TIGR03595 Obg_CgtA_exten Obg f 44.4 25 0.00054 22.0 2.4 22 201-222 44-65 (69)
301 cd06533 Glyco_transf_WecG_TagA 44.1 1.1E+02 0.0023 22.9 6.3 34 194-230 107-140 (171)
302 PRK12360 4-hydroxy-3-methylbut 44.0 1.6E+02 0.0035 24.2 7.6 50 166-223 76-126 (281)
303 PF07453 NUMOD1: NUMOD1 domain 43.8 44 0.00095 17.7 3.1 29 69-98 2-30 (37)
304 cd05013 SIS_RpiR RpiR-like pro 43.7 31 0.00066 24.1 3.2 30 145-174 73-102 (139)
305 TIGR02109 PQQ_syn_pqqE coenzym 42.8 52 0.0011 27.8 4.9 40 143-183 65-107 (358)
306 smart00540 LEM in nuclear memb 42.8 24 0.00053 20.0 1.9 31 149-179 9-39 (44)
307 PRK00286 xseA exodeoxyribonucl 42.6 1.8E+02 0.0038 25.5 8.3 61 160-220 136-199 (438)
308 PF04123 DUF373: Domain of unk 42.5 75 0.0016 26.9 5.6 56 149-226 54-111 (344)
309 COG1922 WecG Teichoic acid bio 41.8 95 0.0021 25.1 5.8 70 148-220 97-168 (253)
310 cd02971 PRX_family Peroxiredox 41.7 1.2E+02 0.0026 21.1 7.7 42 146-187 43-85 (140)
311 PRK05301 pyrroloquinoline quin 41.4 51 0.0011 28.1 4.7 41 142-183 73-116 (378)
312 TIGR02744 TrbI_Ftype type-F co 40.4 1.3E+02 0.0027 21.0 5.7 13 68-80 32-44 (112)
313 COG0381 WecB UDP-N-acetylgluco 40.0 88 0.0019 26.9 5.6 80 149-234 20-113 (383)
314 smart00497 IENR1 Intron encode 39.8 71 0.0015 18.2 3.9 31 68-99 2-32 (53)
315 cd03018 PRX_AhpE_like Peroxire 39.7 75 0.0016 22.6 4.8 41 146-186 49-89 (149)
316 cd05006 SIS_GmhA Phosphoheptos 39.6 31 0.00067 25.8 2.8 30 143-172 112-141 (177)
317 TIGR00696 wecB_tagA_cpsF bacte 39.4 1.3E+02 0.0027 22.8 6.0 34 194-230 108-141 (177)
318 cd01421 IMPCH Inosine monophos 39.3 67 0.0014 24.6 4.4 34 145-183 10-43 (187)
319 COG1834 N-Dimethylarginine dim 39.2 1.3E+02 0.0028 24.5 6.2 79 149-233 41-147 (267)
320 PF05988 DUF899: Bacterial pro 39.1 1.1E+02 0.0023 24.0 5.5 44 147-190 94-137 (211)
321 PRK13937 phosphoheptose isomer 38.5 41 0.00089 25.6 3.3 33 143-175 117-149 (188)
322 PF03808 Glyco_tran_WecB: Glyc 38.5 1.7E+02 0.0036 21.9 6.8 35 194-231 109-143 (172)
323 COG1911 RPL30 Ribosomal protei 37.3 89 0.0019 21.1 4.2 44 140-183 16-63 (100)
324 TIGR00936 ahcY adenosylhomocys 36.6 2.6E+02 0.0057 24.3 8.2 74 142-223 39-115 (406)
325 cd05005 SIS_PHI Hexulose-6-pho 36.5 45 0.00097 25.0 3.2 32 144-175 87-118 (179)
326 cd06537 CIDE_N_B CIDE_N domain 36.2 23 0.0005 23.0 1.3 16 69-84 40-55 (81)
327 PF03193 DUF258: Protein of un 36.1 1.1E+02 0.0023 22.9 5.0 47 149-196 2-48 (161)
328 KOG3147 6-phosphogluconolacton 36.1 2.3E+02 0.005 22.8 7.5 81 153-233 34-126 (252)
329 TIGR00441 gmhA phosphoheptose 36.1 44 0.00095 24.5 3.0 31 144-174 91-121 (154)
330 PF00875 DNA_photolyase: DNA p 35.8 40 0.00086 24.8 2.8 39 144-182 51-89 (165)
331 PF05240 APOBEC_C: APOBEC-like 35.8 37 0.00081 20.3 2.1 21 146-166 2-22 (55)
332 cd04795 SIS SIS domain. SIS (S 35.8 41 0.00088 21.3 2.6 23 144-166 59-81 (87)
333 cd06539 CIDE_N_A CIDE_N domain 35.7 24 0.00051 22.8 1.3 16 69-84 41-56 (78)
334 TIGR00682 lpxK tetraacyldisacc 35.6 25 0.00055 29.3 1.8 83 145-231 44-138 (311)
335 TIGR00237 xseA exodeoxyribonuc 35.4 2.7E+02 0.0058 24.5 8.2 61 160-220 130-194 (432)
336 PLN02151 trehalose-phosphatase 35.3 55 0.0012 27.8 3.8 35 197-232 269-306 (354)
337 TIGR03278 methan_mark_10 putat 35.3 65 0.0014 28.0 4.3 41 143-183 86-130 (404)
338 TIGR03470 HpnH hopanoid biosyn 35.2 43 0.00093 27.9 3.2 29 142-170 83-111 (318)
339 cd06259 YdcF-like YdcF-like. Y 34.8 1.1E+02 0.0024 21.9 5.1 74 148-223 23-105 (150)
340 PF05761 5_nucleotid: 5' nucle 34.7 21 0.00045 31.4 1.2 19 66-84 10-28 (448)
341 PRK00414 gmhA phosphoheptose i 34.6 52 0.0011 25.2 3.3 32 144-175 123-154 (192)
342 COG0263 ProB Glutamate 5-kinas 34.4 2.3E+02 0.005 24.2 7.1 78 146-228 31-114 (369)
343 smart00266 CAD Domains present 34.3 25 0.00055 22.4 1.3 17 68-84 38-54 (74)
344 PLN03017 trehalose-phosphatase 34.2 54 0.0012 28.0 3.6 36 196-232 282-320 (366)
345 PRK02141 Maf-like protein; Rev 33.5 2.3E+02 0.005 22.1 7.0 26 160-187 9-34 (207)
346 KOG0541 Alkyl hydroperoxide re 33.3 93 0.002 23.2 4.2 41 143-183 62-103 (171)
347 KOG2018 Predicted dinucleotide 33.3 1.8E+02 0.0039 24.5 6.2 44 147-190 178-244 (430)
348 PLN02331 phosphoribosylglycina 33.0 2.4E+02 0.0051 22.0 7.2 36 148-183 13-51 (207)
349 PRK14368 Maf-like protein; Pro 32.8 2.3E+02 0.005 21.8 6.7 28 159-188 4-31 (193)
350 PRK00648 Maf-like protein; Rev 32.7 1.1E+02 0.0023 23.6 4.7 27 159-187 2-28 (191)
351 COG2897 SseA Rhodanese-related 32.7 60 0.0013 26.7 3.5 38 194-232 70-107 (285)
352 TIGR02765 crypto_DASH cryptoch 32.6 75 0.0016 27.7 4.4 33 149-181 64-96 (429)
353 PF03603 DNA_III_psi: DNA poly 31.5 1.6E+02 0.0034 21.1 5.1 19 201-219 53-71 (128)
354 TIGR02493 PFLA pyruvate format 31.5 84 0.0018 24.6 4.2 37 143-179 77-118 (235)
355 PF08444 Gly_acyl_tr_C: Aralky 31.4 94 0.002 20.7 3.6 35 149-183 42-76 (89)
356 PRK13938 phosphoheptose isomer 31.3 61 0.0013 25.0 3.2 31 144-174 125-155 (196)
357 PRK11145 pflA pyruvate formate 31.3 62 0.0013 25.6 3.4 27 144-170 83-110 (246)
358 KOG3107 Predicted haloacid deh 31.0 62 0.0014 27.8 3.3 13 68-80 197-209 (468)
359 PHA01976 helix-turn-helix prot 30.8 13 0.00028 22.7 -0.5 43 174-216 19-61 (67)
360 COG2241 CobL Precorrin-6B meth 30.6 2.7E+02 0.0058 21.9 7.4 54 159-219 68-123 (210)
361 PRK06856 DNA polymerase III su 30.5 1E+02 0.0022 22.0 4.0 19 201-219 52-70 (128)
362 KOG0203 Na+/K+ ATPase, alpha s 30.2 42 0.00092 31.9 2.4 40 143-182 590-629 (1019)
363 cd03028 GRX_PICOT_like Glutare 30.1 1.6E+02 0.0035 19.1 7.2 58 160-223 8-73 (90)
364 PF06574 FAD_syn: FAD syntheta 30.1 1.9E+02 0.0041 21.3 5.6 14 153-166 30-43 (157)
365 PRK13371 4-hydroxy-3-methylbut 29.8 3.7E+02 0.0081 23.3 7.8 49 167-223 118-167 (387)
366 cd01615 CIDE_N CIDE_N domain, 29.6 34 0.00073 22.1 1.3 17 68-84 40-56 (78)
367 cd01994 Alpha_ANH_like_IV This 29.6 2.6E+02 0.0056 21.4 7.7 74 152-228 16-102 (194)
368 cd02970 PRX_like2 Peroxiredoxi 29.4 1.5E+02 0.0032 20.8 5.0 41 146-186 44-84 (149)
369 cd08185 Fe-ADH1 Iron-containin 29.2 3.6E+02 0.0079 23.0 8.5 82 146-230 11-101 (380)
370 smart00455 RBD Raf-like Ras-bi 29.1 54 0.0012 20.6 2.2 26 194-219 18-43 (70)
371 PF02350 Epimerase_2: UDP-N-ac 29.0 90 0.002 26.4 4.1 79 154-233 2-87 (346)
372 COG5190 FCP1 TFIIF-interacting 29.0 1.3E+02 0.0029 26.0 5.0 83 143-228 252-336 (390)
373 cd06589 GH31 The enzymes of gl 28.8 71 0.0015 25.8 3.4 27 143-169 63-89 (265)
374 PF12017 Tnp_P_element: Transp 28.6 1.2E+02 0.0026 24.3 4.5 34 149-182 199-232 (236)
375 cd06536 CIDE_N_ICAD CIDE_N dom 28.3 36 0.00077 22.1 1.2 16 69-84 43-58 (80)
376 COG0541 Ffh Signal recognition 28.1 2.4E+02 0.0053 24.8 6.5 86 145-231 140-230 (451)
377 COG1180 PflA Pyruvate-formate 28.0 52 0.0011 26.6 2.4 28 144-171 97-124 (260)
378 TIGR02494 PFLE_PFLC glycyl-rad 27.7 1.1E+02 0.0023 25.1 4.3 28 143-170 137-165 (295)
379 cd04906 ACT_ThrD-I_1 First of 27.7 76 0.0016 20.5 2.8 23 147-169 54-76 (85)
380 COG2227 UbiG 2-polyprenyl-3-me 27.7 1.9E+02 0.0041 23.2 5.3 37 184-221 125-161 (243)
381 PRK13936 phosphoheptose isomer 27.6 75 0.0016 24.4 3.2 32 144-175 123-154 (197)
382 PF00072 Response_reg: Respons 27.5 1.8E+02 0.0039 19.0 5.8 37 146-182 56-94 (112)
383 PRK10886 DnaA initiator-associ 27.1 72 0.0016 24.6 3.0 33 144-176 121-153 (196)
384 TIGR00355 purH phosphoribosyla 27.0 1.8E+02 0.0039 26.2 5.6 69 145-220 10-98 (511)
385 PF13701 DDE_Tnp_1_4: Transpos 27.0 1.1E+02 0.0025 26.9 4.5 17 67-83 138-154 (448)
386 PRK14363 Maf-like protein; Pro 27.0 2.3E+02 0.0051 22.0 5.8 26 160-187 1-26 (204)
387 PRK00234 Maf-like protein; Rev 26.9 2E+02 0.0044 22.1 5.4 25 161-187 3-27 (192)
388 PRK04425 Maf-like protein; Rev 26.7 3E+02 0.0065 21.2 6.4 27 159-187 4-30 (196)
389 COG0019 LysA Diaminopimelate d 26.6 1.7E+02 0.0038 25.3 5.5 67 153-231 46-113 (394)
390 COG2044 Predicted peroxiredoxi 26.4 99 0.0021 21.8 3.2 26 143-168 59-84 (120)
391 smart00481 POLIIIAc DNA polyme 26.3 1E+02 0.0022 18.6 3.1 23 147-169 16-38 (67)
392 cd06538 CIDE_N_FSP27 CIDE_N do 26.3 41 0.00088 21.8 1.2 16 69-84 40-55 (79)
393 PRK11557 putative DNA-binding 26.2 74 0.0016 25.7 3.1 32 144-175 187-218 (278)
394 PF06901 FrpC: RTX iron-regula 26.2 38 0.00083 26.0 1.2 14 68-81 58-71 (271)
395 PF08620 RPAP1_C: RPAP1-like, 25.9 26 0.00056 22.3 0.3 9 72-80 4-12 (73)
396 PF10885 DUF2684: Protein of u 25.8 25 0.00055 22.6 0.2 39 3-41 2-40 (89)
397 cd01766 Ufm1 Urm1-like ubiquit 25.7 1E+02 0.0022 19.6 2.8 36 195-231 25-60 (82)
398 cd01948 EAL EAL domain. This d 25.5 1.7E+02 0.0036 22.5 4.9 36 148-183 134-169 (240)
399 PRK11337 DNA-binding transcrip 25.5 91 0.002 25.4 3.5 32 144-175 199-230 (292)
400 TIGR00172 maf MAF protein. Thi 25.4 3.1E+02 0.0066 20.9 6.4 26 160-187 3-28 (183)
401 COG4312 Uncharacterized protei 25.3 1.8E+02 0.0038 23.1 4.7 44 146-189 99-142 (247)
402 PF03020 LEM: LEM domain; Int 25.2 14 0.0003 20.9 -1.0 31 150-180 10-40 (43)
403 PRK00148 Maf-like protein; Rev 25.1 2.6E+02 0.0056 21.5 5.7 25 161-187 2-26 (194)
404 PRK05752 uroporphyrinogen-III 24.7 2.3E+02 0.0049 22.6 5.6 21 144-164 11-31 (255)
405 TIGR03140 AhpF alkyl hydropero 24.7 2.8E+02 0.006 24.8 6.7 89 141-233 128-231 (515)
406 PF02017 CIDE-N: CIDE-N domain 24.7 45 0.00098 21.6 1.2 15 69-83 41-55 (78)
407 KOG1014 17 beta-hydroxysteroid 24.6 4.2E+02 0.0091 22.2 7.2 58 149-210 63-123 (312)
408 cd06595 GH31_xylosidase_XylS-l 24.5 94 0.002 25.5 3.4 25 143-167 71-95 (292)
409 cd04256 AAK_P5CS_ProBA AAK_P5C 24.4 3.1E+02 0.0066 22.5 6.3 77 147-223 35-130 (284)
410 TIGR00236 wecB UDP-N-acetylglu 24.4 2.7E+02 0.0058 23.3 6.3 83 149-232 17-105 (365)
411 COG3655 Predicted transcriptio 24.3 1E+02 0.0023 19.6 2.8 24 200-223 46-69 (73)
412 PF05221 AdoHcyase: S-adenosyl 24.3 3E+02 0.0065 22.5 6.0 75 143-223 51-130 (268)
413 COG1015 DeoB Phosphopentomutas 24.3 4.7E+02 0.01 22.6 8.9 76 144-219 222-330 (397)
414 PF13580 SIS_2: SIS domain; PD 24.2 63 0.0014 23.1 2.1 24 144-167 115-138 (138)
415 PF01976 DUF116: Protein of un 24.2 2.6E+02 0.0057 20.7 5.4 35 147-183 74-108 (158)
416 COG5426 Uncharacterized membra 23.9 3.3E+02 0.0071 21.2 5.8 78 141-221 27-118 (254)
417 PRK11382 frlB fructoselysine-6 23.8 84 0.0018 26.4 3.0 31 144-174 104-134 (340)
418 PRK00884 Maf-like protein; Rev 23.8 2.5E+02 0.0054 21.6 5.3 26 161-188 3-28 (194)
419 cd06406 PB1_P67 A PB1 domain i 23.7 1.6E+02 0.0035 19.1 3.6 32 184-215 9-40 (80)
420 KOG0023 Alcohol dehydrogenase, 23.7 4.6E+02 0.0099 22.3 7.6 32 151-183 197-228 (360)
421 COG0678 AHP1 Peroxiredoxin [Po 23.7 1.9E+02 0.0042 21.4 4.4 40 144-183 57-97 (165)
422 PRK00994 F420-dependent methyl 23.5 1.4E+02 0.0031 23.9 3.9 40 144-183 72-111 (277)
423 cd08573 GDPD_GDE1 Glycerophosp 23.4 1.7E+02 0.0036 23.5 4.6 34 149-182 218-251 (258)
424 PRK15317 alkyl hydroperoxide r 23.3 3E+02 0.0064 24.7 6.6 89 141-233 127-230 (517)
425 COG2086 FixA Electron transfer 23.3 4.1E+02 0.0089 21.6 6.7 81 145-229 39-126 (260)
426 PF08445 FR47: FR47-like prote 23.0 2.2E+02 0.0047 18.3 4.6 35 149-183 44-78 (86)
427 PF03671 Ufm1: Ubiquitin fold 22.9 1.1E+02 0.0024 19.4 2.6 29 195-223 25-53 (76)
428 PRK05476 S-adenosyl-L-homocyst 22.9 5.3E+02 0.011 22.7 8.2 73 142-223 55-132 (425)
429 PRK09860 putative alcohol dehy 22.8 4.9E+02 0.011 22.3 7.9 80 146-228 16-104 (383)
430 PRK15482 transcriptional regul 22.8 94 0.002 25.3 3.1 32 143-174 193-224 (285)
431 PTZ00325 malate dehydrogenase; 22.8 1.9E+02 0.0042 24.2 4.9 71 147-220 104-182 (321)
432 COG4889 Predicted helicase [Ge 22.7 2.6E+02 0.0056 27.5 5.9 49 144-192 261-313 (1518)
433 cd08187 BDH Butanol dehydrogen 22.6 4.2E+02 0.0092 22.6 7.1 81 145-228 13-102 (382)
434 cd06591 GH31_xylosidase_XylS X 22.3 1.1E+02 0.0023 25.5 3.4 24 143-166 63-86 (319)
435 PF07859 Abhydrolase_3: alpha/ 22.3 55 0.0012 24.8 1.6 23 201-223 55-80 (211)
436 COG0036 Rpe Pentose-5-phosphat 22.2 3.5E+02 0.0077 21.4 5.9 39 143-181 93-133 (220)
437 cd06660 Aldo_ket_red Aldo-keto 22.1 4.1E+02 0.0089 21.2 7.1 67 145-212 126-194 (285)
438 cd05007 SIS_Etherase N-acetylm 22.0 1.2E+02 0.0027 24.4 3.6 32 144-175 130-161 (257)
439 COG0602 NrdG Organic radical a 22.0 1.1E+02 0.0023 24.0 3.1 27 145-171 85-111 (212)
440 PF05673 DUF815: Protein of un 21.9 4.3E+02 0.0094 21.3 7.0 75 148-222 69-148 (249)
441 PF04007 DUF354: Protein of un 21.8 3.4E+02 0.0075 22.9 6.3 37 149-186 17-53 (335)
442 PRK02947 hypothetical protein; 21.8 94 0.002 24.8 2.8 26 144-169 118-143 (246)
443 PF14824 Sirohm_synth_M: Siroh 21.8 1.3E+02 0.0029 15.5 2.7 20 158-177 3-22 (30)
444 PRK09437 bcp thioredoxin-depen 21.7 2.3E+02 0.005 20.2 4.8 37 150-186 55-91 (154)
445 cd06594 GH31_glucosidase_YihQ 21.6 1.1E+02 0.0025 25.4 3.4 25 143-167 68-92 (317)
446 cd01773 Faf1_like1_UBX Faf1 ik 21.5 86 0.0019 20.5 2.1 18 205-222 64-81 (82)
447 TIGR01657 P-ATPase-V P-type AT 21.5 3.3E+02 0.0071 27.1 6.9 82 147-232 602-692 (1054)
448 PLN02891 IMP cyclohydrolase 21.5 2.1E+02 0.0045 26.0 4.9 72 144-220 31-121 (547)
449 PF03033 Glyco_transf_28: Glyc 21.4 1.8E+02 0.0039 20.2 4.1 35 149-186 16-50 (139)
450 PRK11543 gutQ D-arabinose 5-ph 21.4 1E+02 0.0022 25.5 3.0 29 144-172 101-129 (321)
451 PF02196 RBD: Raf-like Ras-bin 21.2 1.1E+02 0.0023 19.3 2.4 26 194-219 19-44 (71)
452 PF10113 Fibrillarin_2: Fibril 21.2 1.4E+02 0.0031 26.0 3.8 32 199-231 208-239 (505)
453 KOG0622 Ornithine decarboxylas 20.9 1.2E+02 0.0026 26.4 3.3 42 169-221 90-131 (448)
454 cd08612 GDPD_GDE4 Glycerophosp 20.9 1.9E+02 0.0041 23.8 4.5 39 148-189 250-288 (300)
455 PF12844 HTH_19: Helix-turn-he 20.9 11 0.00024 22.8 -2.2 44 173-216 15-58 (64)
456 KOG0205 Plasma membrane H+-tra 20.7 1.6E+02 0.0035 27.5 4.2 88 143-231 492-601 (942)
457 cd06599 GH31_glycosidase_Aec37 20.7 1.2E+02 0.0026 25.2 3.4 25 143-167 70-94 (317)
458 cd06598 GH31_transferase_CtsZ 20.7 1.2E+02 0.0025 25.3 3.3 25 143-167 67-91 (317)
459 PRK06100 DNA polymerase III su 20.7 2.7E+02 0.0058 20.0 4.7 19 201-219 56-74 (132)
460 PF06506 PrpR_N: Propionate ca 20.6 1.9E+02 0.0041 21.6 4.2 35 149-183 67-102 (176)
461 PRK01441 Maf-like protein; Rev 20.6 2.2E+02 0.0048 22.1 4.6 30 160-191 5-34 (207)
462 PRK12880 3-oxoacyl-(acyl carri 20.5 1.1E+02 0.0025 25.8 3.2 47 172-223 247-297 (353)
463 PRK10727 DNA-binding transcrip 20.5 3.2E+02 0.007 22.5 6.0 33 184-220 238-271 (343)
464 COG1927 Mtd Coenzyme F420-depe 20.4 4.3E+02 0.0094 20.8 7.2 66 153-223 25-97 (277)
465 PF01297 TroA: Periplasmic sol 20.4 4.1E+02 0.0089 21.0 6.3 37 147-183 187-224 (256)
466 COG0657 Aes Esterase/lipase [L 20.1 3.5E+02 0.0077 22.0 6.0 22 208-229 146-167 (312)
467 PRK15424 propionate catabolism 20.1 6.7E+02 0.015 22.8 8.0 68 147-223 95-164 (538)
468 TIGR03590 PseG pseudaminic aci 20.0 4.8E+02 0.01 21.1 8.6 65 149-222 43-112 (279)
469 COG4483 Uncharacterized protei 20.0 90 0.002 19.3 1.8 25 202-231 7-31 (68)
470 PF02401 LYTB: LytB protein; 20.0 3E+02 0.0065 22.6 5.4 53 167-227 72-125 (281)
471 TIGR02668 moaA_archaeal probab 20.0 1.3E+02 0.0027 24.7 3.3 27 143-169 68-95 (302)
No 1
>PRK11587 putative phosphatase; Provisional
Probab=99.95 E-value=7.3e-27 Score=183.95 Aligned_cols=166 Identities=19% Similarity=0.260 Sum_probs=124.3
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCchHHHHHhc-CCchHHHHHHhh-ccChhHHHHHHHHHHHHHHhccCC
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEYKRVKAE-NPTGIDILHHIE-SWSPDLQRHAYQTIADFERQGLDR 141 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 141 (235)
++|+|+|||||||+|+...+..+|.+++ |.+.....+.. +.......+.+. ................+.......
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLEQIEATDTEG 81 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhcC
Confidence 3799999999999999998888888766 66553333333 434444443332 222222222222222223333456
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREF-RPYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
..++||+.++|+.|+++|++++|+||+........++..|+. |+.+++++. ...||+|++|..+++++|+.|++|++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~i 161 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVV 161 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEE
Confidence 789999999999999999999999999988888888888887 777887654 478999999999999999999999999
Q ss_pred cCCchhhHHHHhhh
Q 026634 220 GDSLKDDIDVVFNT 233 (235)
Q Consensus 220 GDs~~~Di~~A~~~ 233 (235)
||+. .|+++|+++
T Consensus 162 gDs~-~di~aA~~a 174 (218)
T PRK11587 162 EDAP-AGVLSGLAA 174 (218)
T ss_pred ecch-hhhHHHHHC
Confidence 9999 999999874
No 2
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.95 E-value=1.7e-26 Score=181.33 Aligned_cols=163 Identities=20% Similarity=0.275 Sum_probs=125.5
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCc---hHHHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHH-HHhcc
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GED---EYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADF-ERQGL 139 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 139 (235)
++|+|+||+||||+|+...+.++|.+++ |.. ........+....+.... +.+.....+...+..+ .+...
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSK---IDESKVEEMITTYREFNHEHHD 78 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHh---cCHHHHHHHHHHHHHHHHHhhh
Confidence 3799999999999999988888877765 322 133333444443333332 2333333333333332 22233
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcE
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
....++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++.. ..||+|+.|+++++++|++|++|
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 45679999999999999999999999999999999999999998 9999987755 78999999999999999999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
++|||+. +|+++|+++
T Consensus 159 ~~iGDs~-~Di~aa~~a 174 (214)
T PRK13288 159 LMVGDNH-HDILAGKNA 174 (214)
T ss_pred EEECCCH-HHHHHHHHC
Confidence 9999999 999999874
No 3
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=3.8e-26 Score=183.11 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=125.1
Q ss_pred CCCceEEEEecCCCccCCcccHHHHHHHHc---CC----ch-HH-HHHh-cCCchHHHHHHhhccChhHHHHHHHH-HHH
Q 026634 65 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GE----DE-YK-RVKA-ENPTGIDILHHIESWSPDLQRHAYQT-IAD 133 (235)
Q Consensus 65 ~~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~----~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 133 (235)
..++|+|+|||||||+|+...+..+|++++ |. +. .. ..+. .+.........+.........+.... ...
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPDDLERGLKFTDDKEAL 98 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 345899999999999999998888877766 32 22 22 2222 33333333333322111111111111 222
Q ss_pred HHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcC
Q 026634 134 FERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWE 210 (235)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~ 210 (235)
|.+.......++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++.. .+||+|++|+++++++|
T Consensus 99 y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~ 178 (248)
T PLN02770 99 FRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLK 178 (248)
T ss_pred HHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhC
Confidence 33333345689999999999999999999999999999999999999998 9999887754 78999999999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|++|||+. .|+++|+++
T Consensus 179 ~~~~~~l~vgDs~-~Di~aA~~a 200 (248)
T PLN02770 179 VSKDHTFVFEDSV-SGIKAGVAA 200 (248)
T ss_pred CChhHEEEEcCCH-HHHHHHHHC
Confidence 9999999999999 999999864
No 4
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=6.1e-26 Score=179.93 Aligned_cols=166 Identities=21% Similarity=0.260 Sum_probs=125.1
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHh-cCCchHHHHHHhh-ccChhHHHHHHHH-HHHHHHhc
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKA-ENPTGIDILHHIE-SWSPDLQRHAYQT-IADFERQG 138 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 138 (235)
++|+|+||+||||+|+...+.++|+.++ |.+. .+..+. .+........... ........+.... ...|.+..
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEALI 90 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999998888888777 5542 222222 2222222222222 2333223333222 23344433
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCc
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
.....++||+.++++.|+++|++++|+||+....+...++.+|+. |+.+++++. ...||+|++|.++++++|++|++
T Consensus 91 ~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 91 GTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred hhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 445689999999999999999999999999999888899999987 888888775 47899999999999999999999
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
|++|||+. +|+++|+++
T Consensus 171 ~l~IGDs~-~Di~aA~~a 187 (229)
T PRK13226 171 CVYVGDDE-RDILAARAA 187 (229)
T ss_pred EEEeCCCH-HHHHHHHHC
Confidence 99999999 999999864
No 5
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.94 E-value=1.2e-25 Score=180.71 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=126.0
Q ss_pred CceEEEEecCCCccCCcc-cHHHHHHHHc---CCch--HHHHH-hcCCchHHHHHHhhccC--hhHHHHHHHHHHHHHHh
Q 026634 67 RLRGVVFDMDGTLTVPVI-DFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIESWS--PDLQRHAYQTIADFERQ 137 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~-~~~~~~~~~l---g~~~--~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 137 (235)
.+|+|+|||||||+|+.. .+.++|.+++ |.+. ....+ ..+.........+..+. ......+......+...
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 102 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKEDLYEY 102 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999964 4455666665 6543 33333 44555555555444322 22223333333322221
Q ss_pred -ccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCC
Q 026634 138 -GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 138 -~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~ 213 (235)
......++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++.. .+||+|++|+.+++++|++|
T Consensus 103 ~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p 182 (260)
T PLN03243 103 MQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIP 182 (260)
T ss_pred HHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCCh
Confidence 2234678999999999999999999999999999999999999997 9999987765 79999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHhhh
Q 026634 214 NEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 214 ~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|+||||+. .|+++|+++
T Consensus 183 ~~~l~IgDs~-~Di~aA~~a 201 (260)
T PLN03243 183 ERCIVFGNSN-SSVEAAHDG 201 (260)
T ss_pred HHeEEEcCCH-HHHHHHHHc
Confidence 9999999999 999999874
No 6
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.94 E-value=4.9e-26 Score=179.14 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=126.0
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhcCCchHHHHHHhhcc----ChhHHHHHHHHHHHHHHhc
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIESW----SPDLQRHAYQTIADFERQG 138 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 138 (235)
+++|||||||||+|+...+.++|.+++ |.+. .......+.........+... ...................
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE 81 (221)
T ss_pred CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence 689999999999999998888888887 5543 233333443333333322211 1111122222222333334
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCc
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
.....+.||+.+++..|+++|++++++|++.+..+...++.+|+. |+.++++++ ..+||+|+.|+.+++++|++|++
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 456789999999999999999999999999999999999999988 999887654 58899999999999999999999
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
|++|+|+. +++.+|+++
T Consensus 162 CvviEDs~-~Gi~Aa~aA 178 (221)
T COG0637 162 CVVVEDSP-AGIQAAKAA 178 (221)
T ss_pred eEEEecch-hHHHHHHHC
Confidence 99999999 999999864
No 7
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=174.47 Aligned_cols=166 Identities=23% Similarity=0.406 Sum_probs=126.2
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHh-cCCchHHHHHHhhccCh-hHH-HHHHHHHHHHHHhc
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKA-ENPTGIDILHHIESWSP-DLQ-RHAYQTIADFERQG 138 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 138 (235)
++++|+||+||||+|+...+..+++..+ |.+. ....+. .+............... ... .......+.+.+..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (220)
T COG0546 3 MIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTAY 82 (220)
T ss_pred CCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 4799999999999999998888777655 6553 333343 34444444444333221 111 12222222222222
Q ss_pred cC--CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCC
Q 026634 139 LD--RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 139 ~~--~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~ 213 (235)
.. ...++||+.++|..|+++|++++|+||++...++.+++.+|+. |+.+++++. ...||+|..+..+++++|++|
T Consensus 83 ~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~ 162 (220)
T COG0546 83 AELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDP 162 (220)
T ss_pred HhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCCh
Confidence 22 3579999999999999999999999999999999999999998 999999554 489999999999999999998
Q ss_pred CcEEEEcCCchhhHHHHhhh
Q 026634 214 NEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 214 ~~~v~iGDs~~~Di~~A~~~ 233 (235)
++++||||+. +|+++|+++
T Consensus 163 ~~~l~VGDs~-~Di~aA~~A 181 (220)
T COG0546 163 EEALMVGDSL-NDILAAKAA 181 (220)
T ss_pred hheEEECCCH-HHHHHHHHc
Confidence 9999999999 999999975
No 8
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.94 E-value=3e-25 Score=175.28 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=125.0
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHc---CCchH--HHH-HhcCCchHHHHHHh---hccChhHH-HHHHHHHHHHH
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY--KRV-KAENPTGIDILHHI---ESWSPDLQ-RHAYQTIADFE 135 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~ 135 (235)
.++|+|+||+||||+|+...+..++.+++ |.+.. ... ...+.......... ..+..... .......+.+.
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVI 84 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999988888777665 55431 222 22333322222222 12211111 22222333333
Q ss_pred HhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCC
Q 026634 136 RQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQ 212 (235)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~ 212 (235)
+.......++||+.++++.|+++|++++|+||+....++.+++.+|+. |+.+++++.. .+||+|++|+.+++++|++
T Consensus 85 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 164 (222)
T PRK10826 85 SLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVD 164 (222)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCC
Confidence 444456789999999999999999999999999999999999999997 9998887654 7999999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHhhh
Q 026634 213 PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 213 ~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|++|++|||+. +|+++|+++
T Consensus 165 ~~~~~~igDs~-~Di~aA~~a 184 (222)
T PRK10826 165 PLTCVALEDSF-NGMIAAKAA 184 (222)
T ss_pred HHHeEEEcCCh-hhHHHHHHc
Confidence 99999999999 999999864
No 9
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.94 E-value=5e-25 Score=173.76 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=125.8
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHH-hcCCchHHHHHHhh---ccChhHHHHHHHHH-HHHHHh
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIE---SWSPDLQRHAYQTI-ADFERQ 137 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~ 137 (235)
+|+|+||+||||+|+...+.++|.+++ |.+. ....+ ..+....+....+. .............. +.+.+.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998888888776 5543 23333 33444445444443 22222233333222 233332
Q ss_pred cc-CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce----EEEEEecCCC-CCCCChHHHHHHHHHcCC
Q 026634 138 GL-DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSPALSREFR-PYKPDPGPLLHICSTWEV 211 (235)
Q Consensus 138 ~~-~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~----f~~i~~~~~~-~~KP~~~~~~~~~~~l~~ 211 (235)
.. ....++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++.. .+||+|++|+.+++++|+
T Consensus 81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~ 160 (220)
T TIGR03351 81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGV 160 (220)
T ss_pred hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCC
Confidence 22 34589999999999999999999999999999999999999985 8888887654 799999999999999999
Q ss_pred C-CCcEEEEcCCchhhHHHHhhh
Q 026634 212 Q-PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 212 ~-~~~~v~iGDs~~~Di~~A~~~ 233 (235)
. |++|+||||+. +|+++|+++
T Consensus 161 ~~~~~~~~igD~~-~Di~aa~~a 182 (220)
T TIGR03351 161 QDVQSVAVAGDTP-NDLEAGINA 182 (220)
T ss_pred CChhHeEEeCCCH-HHHHHHHHC
Confidence 7 79999999999 999999874
No 10
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.93 E-value=6.9e-25 Score=182.63 Aligned_cols=166 Identities=15% Similarity=0.257 Sum_probs=128.5
Q ss_pred CceEEEEecCCCccCCcc-cHHHHHHHHc---CCch--HHHH-HhcCCchHHHHHHhhcc--ChhHHHHHHHHHHH-HHH
Q 026634 67 RLRGVVFDMDGTLTVPVI-DFPAMYRAVL---GEDE--YKRV-KAENPTGIDILHHIESW--SPDLQRHAYQTIAD-FER 136 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~-~~~~~~~~~l---g~~~--~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 136 (235)
..++|||||||||+|+.. .+.++|.+++ |.+. .... ...+.........+..+ .......+.+.+.. |.+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~ 209 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQA 209 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999887 3445666654 6543 2223 34455555555554332 23333444444333 333
Q ss_pred hccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCC
Q 026634 137 QGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~ 213 (235)
.......++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++.. ..||+|++|..+++++|+.|
T Consensus 210 ~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~P 289 (381)
T PLN02575 210 LQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIP 289 (381)
T ss_pred HhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCc
Confidence 33345679999999999999999999999999999999999999998 9999998765 79999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHhhh
Q 026634 214 NEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 214 ~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|+||||+. .|+++|+++
T Consensus 290 eecl~IGDS~-~DIeAAk~A 308 (381)
T PLN02575 290 ERCIVFGNSN-QTVEAAHDA 308 (381)
T ss_pred ccEEEEcCCH-HHHHHHHHc
Confidence 9999999999 999999874
No 11
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.93 E-value=1e-24 Score=175.57 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=118.5
Q ss_pred ceEEEEecCCCccCCcc-cHHHHHHHHc---CCch--HHHHHhcCCchHHHHHHh-------------hc--cChhHHHH
Q 026634 68 LRGVVFDMDGTLTVPVI-DFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHI-------------ES--WSPDLQRH 126 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~-~~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~ 126 (235)
+|+|+||+||||+|+.. .+..++.+++ |.+. .......+.........+ .. ........
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999864 3455666554 5543 222223333322221111 01 11222223
Q ss_pred HHHHHHH-HHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--E-EEEEecCCC-CCCCChHH
Q 026634 127 AYQTIAD-FERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--F-SPALSREFR-PYKPDPGP 201 (235)
Q Consensus 127 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f-~~i~~~~~~-~~KP~~~~ 201 (235)
+...+.. +.+.......++||+.++|+.|+++|++++|+||+....++.+++.+|+. | +.+++++.. ..||+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~ 161 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWM 161 (253)
T ss_pred HHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHH
Confidence 3322222 22333345689999999999999999999999999999999999999987 4 888887755 89999999
Q ss_pred HHHHHHHcCCC-CCcEEEEcCCchhhHHHHhhh
Q 026634 202 LLHICSTWEVQ-PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 202 ~~~~~~~l~~~-~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|..+++++|+. |++|++|||+. +|+++|+++
T Consensus 162 ~~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~~a 193 (253)
T TIGR01422 162 ALKNAIELGVYDVAACVKVGDTV-PDIEEGRNA 193 (253)
T ss_pred HHHHHHHcCCCCchheEEECCcH-HHHHHHHHC
Confidence 99999999995 99999999999 999999874
No 12
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.93 E-value=2.1e-24 Score=174.93 Aligned_cols=166 Identities=15% Similarity=0.105 Sum_probs=117.5
Q ss_pred CceEEEEecCCCccCCccc-HHHHHHHHc---CCch--HHHHHhcCCchHHHHHHh-------------hcc--ChhHHH
Q 026634 67 RLRGVVFDMDGTLTVPVID-FPAMYRAVL---GEDE--YKRVKAENPTGIDILHHI-------------ESW--SPDLQR 125 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~-~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~ 125 (235)
++|+|+||+||||+|+... +..+|.+++ |.+. ....+..+.........+ ... ......
T Consensus 3 ~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (267)
T PRK13478 3 KIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADVD 82 (267)
T ss_pred ceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHHH
Confidence 4899999999999998643 355666655 5543 222233333322222111 111 111222
Q ss_pred HHHHHH-HHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCC-CCCCChH
Q 026634 126 HAYQTI-ADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFR-PYKPDPG 200 (235)
Q Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~-~~KP~~~ 200 (235)
.....+ ..+.+.......++||+.++|+.|+++|++++|+||+....+..+++.+|+. ++.+++++.. ..||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~ 162 (267)
T PRK13478 83 ALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPW 162 (267)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChH
Confidence 222222 2233333445689999999999999999999999999999999999887765 4788887654 7899999
Q ss_pred HHHHHHHHcCCC-CCcEEEEcCCchhhHHHHhhh
Q 026634 201 PLLHICSTWEVQ-PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 201 ~~~~~~~~l~~~-~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+|..+++++|+. |++|+||||+. +|+++|+++
T Consensus 163 ~~~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~a 195 (267)
T PRK13478 163 MALKNAIELGVYDVAACVKVDDTV-PGIEEGLNA 195 (267)
T ss_pred HHHHHHHHcCCCCCcceEEEcCcH-HHHHHHHHC
Confidence 999999999996 69999999999 999999874
No 13
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.93 E-value=2.1e-24 Score=175.06 Aligned_cols=169 Identities=23% Similarity=0.309 Sum_probs=126.4
Q ss_pred CCCCceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhc-CCchHHHHHHhh-------ccChhHHHHHHHH
Q 026634 64 PKTRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAE-NPTGIDILHHIE-------SWSPDLQRHAYQT 130 (235)
Q Consensus 64 ~~~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~ 130 (235)
....+|+|+|||||||+|+...+..++..++ |.+. ......+ +........... ..+..........
T Consensus 9 ~~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (272)
T PRK13223 9 PGRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALAL 88 (272)
T ss_pred CCccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHH
Confidence 3456899999999999999998888887765 5543 2223333 333333333221 1222333333333
Q ss_pred HHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHH
Q 026634 131 IADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICS 207 (235)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~ 207 (235)
+.+..........++||+.++|+.|+++|++++|+||++...+...++.+|+. |+.+++++.. ..||+|++|+.+++
T Consensus 89 ~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~ 168 (272)
T PRK13223 89 FMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMK 168 (272)
T ss_pred HHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHH
Confidence 33333322334578999999999999999999999999999999999999987 8888887754 68999999999999
Q ss_pred HcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 208 TWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 208 ~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|++|++|||+. +|+++|+++
T Consensus 169 ~~g~~~~~~l~IGD~~-~Di~aA~~a 193 (272)
T PRK13223 169 MAGVPPSQSLFVGDSR-SDVLAAKAA 193 (272)
T ss_pred HhCCChhHEEEECCCH-HHHHHHHHC
Confidence 9999999999999999 999999864
No 14
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.93 E-value=2.2e-24 Score=169.13 Aligned_cols=162 Identities=23% Similarity=0.321 Sum_probs=121.2
Q ss_pred EEEecCCCccCCcccHHHHHHHHc---CCch--HH-HHHhcCCchHHHHHHhhc-----cChhHHHHHHHHHH-HHHHhc
Q 026634 71 VVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YK-RVKAENPTGIDILHHIES-----WSPDLQRHAYQTIA-DFERQG 138 (235)
Q Consensus 71 vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~ 138 (235)
|+||+||||+|+...+.++++.++ |.+. .. .....+.........+.. ............+. .+.+..
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 689999999999888888877765 5542 22 222233333333333321 11222233333333 233333
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCc
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
.....++||+.++|+.|+++|++++|+||+....++..++++|+. |+.+++++.. ..||+|++|.++++++|++|++
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 345689999999999999999999999999999999999999997 8888887654 7899999999999999999999
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
|++|||+. +|+++|+++
T Consensus 161 ~~~igDs~-~d~~aa~~a 177 (213)
T TIGR01449 161 MVYVGDSR-VDIQAARAA 177 (213)
T ss_pred eEEeCCCH-HHHHHHHHC
Confidence 99999999 999999864
No 15
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.93 E-value=2.4e-24 Score=165.29 Aligned_cols=163 Identities=21% Similarity=0.317 Sum_probs=120.6
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHc---CCchH-HHHH-hcCCchHHHHHHhh-----ccChhHHHHHHHHHHHHHHh
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY-KRVK-AENPTGIDILHHIE-----SWSPDLQRHAYQTIADFERQ 137 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~~-~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 137 (235)
+|+|+||+||||+|+...+..++.+++ |.+.. .... ..+.........+. .+.........+....+..+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999987777776655 55431 1112 22333333333332 23333333343333333322
Q ss_pred c--cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCC
Q 026634 138 G--LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQ 212 (235)
Q Consensus 138 ~--~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~ 212 (235)
. .....++||+.++|+.|+++|++++++||+ ..++..++.+|+. |+.+++++. ...||+|++|.++++++|++
T Consensus 81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 158 (185)
T TIGR02009 81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVS 158 (185)
T ss_pred HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCC
Confidence 2 234689999999999999999999999998 6678889999998 999888765 47999999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHhhh
Q 026634 213 PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 213 ~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|++|++|||+. +|+++|+++
T Consensus 159 ~~~~v~IgD~~-~di~aA~~~ 178 (185)
T TIGR02009 159 PNECVVFEDAL-AGVQAARAA 178 (185)
T ss_pred HHHeEEEeCcH-hhHHHHHHC
Confidence 99999999999 999999864
No 16
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.92 E-value=8.2e-25 Score=172.74 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=86.0
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-CCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
....++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++ ....||+|++|+.+++++|++|++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 45689999999999999999999999999999999999999987 99988866 4589999999999999999999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
+||||+. .|+++|+++
T Consensus 170 l~igDs~-~di~aA~~a 185 (224)
T PRK14988 170 LFIDDSE-PILDAAAQF 185 (224)
T ss_pred EEEcCCH-HHHHHHHHc
Confidence 9999999 999999864
No 17
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.92 E-value=1.9e-24 Score=170.51 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=114.7
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHc------CCch--HHHHHhcC-------Cc----hHHHHHHhh-ccChhHHHHH
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL------GEDE--YKRVKAEN-------PT----GIDILHHIE-SWSPDLQRHA 127 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~l------g~~~--~~~~~~~~-------~~----~~~~~~~~~-~~~~~~~~~~ 127 (235)
+++|+||+||||+|+...+..++..+. |.+. ......+. .. .......+. .... ...
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 78 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNP---KLV 78 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCH---HHH
Confidence 689999999999999987766655432 3332 11111110 00 000001010 0011 111
Q ss_pred HHHHHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHH
Q 026634 128 YQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLH 204 (235)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~ 204 (235)
.+....+.+.......++||+.++|+.|+++|++++|+||++...+...++.+|+. |+.+++++. +..||+|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~ 158 (221)
T TIGR02253 79 AAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYA 158 (221)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHH
Confidence 12222222222334579999999999999999999999999999999999999998 999887654 479999999999
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 205 ICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+++++|++|++|++|||+..+|+.+|+++
T Consensus 159 ~~~~~~~~~~~~~~igDs~~~di~~A~~a 187 (221)
T TIGR02253 159 ALKRLGVKPEEAVMVGDRLDKDIKGAKNL 187 (221)
T ss_pred HHHHcCCChhhEEEECCChHHHHHHHHHC
Confidence 99999999999999999975799999874
No 18
>PLN02940 riboflavin kinase
Probab=99.92 E-value=2.8e-24 Score=181.71 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=125.4
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhcCCchHHHHHHhhc-cC-hhHHHHHHHHHHHHHHhc
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIES-WS-PDLQRHAYQTIADFERQG 138 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 138 (235)
..+|+|+||+||||+|+...+.+++.+++ |.+. .......+.........+.. .. .....++...........
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQ 88 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 34899999999999999998888888766 5543 22333444444444433322 11 111222222222222222
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHh-hcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCCC
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN-RFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQPN 214 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~-~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~ 214 (235)
.....++||+.++|+.|+++|++++|+||+....+...++ ..|+. |+.+++++.. .+||+|++|..+++++|++|+
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 3456789999999999999999999999999998888886 68887 9999998765 799999999999999999999
Q ss_pred cEEEEcCCchhhHHHHhhh
Q 026634 215 EVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 215 ~~v~iGDs~~~Di~~A~~~ 233 (235)
+|++|||+. +|+++|+++
T Consensus 169 ~~l~VGDs~-~Di~aA~~a 186 (382)
T PLN02940 169 NCLVIEDSL-PGVMAGKAA 186 (382)
T ss_pred HEEEEeCCH-HHHHHHHHc
Confidence 999999999 999999874
No 19
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=6.3e-24 Score=171.87 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=122.3
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHH-hcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccC
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLD 140 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (235)
.+++++|||||||+|+...+..++.+++ |.+. ..... ..+.........+ ........++...+..+......
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRA-GLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHc-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 4799999999999999988888777776 5432 22222 2333333333322 22323333333333333344445
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
...++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++... ++++.+..++++++++|++|++
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~--~k~~~~~~~l~~~~~~p~~~l~ 217 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPIL--SKRRALSQLVAREGWQPAAVMY 217 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCC--CCHHHHHHHHHHhCcChhHEEE
Confidence 6789999999999999999999999999999999999999997 89888776543 4568999999999999999999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+. +|+++|+++
T Consensus 218 IGDs~-~Di~aA~~A 231 (273)
T PRK13225 218 VGDET-RDVEAARQV 231 (273)
T ss_pred ECCCH-HHHHHHHHC
Confidence 99999 999999974
No 20
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.92 E-value=8.8e-24 Score=162.65 Aligned_cols=164 Identities=18% Similarity=0.206 Sum_probs=120.0
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhcCCchHHHHHHhhc-cC-hhHHHHHHHHHH-HHHHhc
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIES-WS-PDLQRHAYQTIA-DFERQG 138 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~ 138 (235)
++|+|+||+||||+|+...+.++|.+++ |.+. .......+....+....+.. .. ....+.+..... .+.+..
T Consensus 4 ~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVKSML 83 (188)
T ss_pred cceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999998888888776 5432 22223333334333333322 11 111122222222 222222
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCc
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
.....++|+ .++|..|++. ++++|+||+....+...++.+|+. |+.+++++.. ..||+|++|..+++++|++|++
T Consensus 84 ~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 161 (188)
T PRK10725 84 LDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQ 161 (188)
T ss_pred hccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHH
Confidence 344567785 6899999876 899999999999999999999998 9999987654 7999999999999999999999
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
|++|||+. +|+++|+++
T Consensus 162 ~l~igDs~-~di~aA~~a 178 (188)
T PRK10725 162 CVVFEDAD-FGIQAARAA 178 (188)
T ss_pred eEEEeccH-hhHHHHHHC
Confidence 99999999 999999874
No 21
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.92 E-value=8.8e-24 Score=163.90 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=117.3
Q ss_pred eEEEEecCCCccCCcccHHHHHHHHc---C-Cch-HHHHH-hcCCch---------HHHHHHhhcc------ChhHHHHH
Q 026634 69 RGVVFDMDGTLTVPVIDFPAMYRAVL---G-EDE-YKRVK-AENPTG---------IDILHHIESW------SPDLQRHA 127 (235)
Q Consensus 69 k~vifDlDGTL~d~~~~~~~~~~~~l---g-~~~-~~~~~-~~~~~~---------~~~~~~~~~~------~~~~~~~~ 127 (235)
++|+|||||||+|+...+..++.+++ | .+. ..... ..+... ......+... .......+
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 36899999999999998888888776 4 222 22222 222111 1111222111 11223333
Q ss_pred HHHHHHHHHhcc----------CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCC
Q 026634 128 YQTIADFERQGL----------DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPY 195 (235)
Q Consensus 128 ~~~~~~~~~~~~----------~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~ 195 (235)
...++.+..... ....+.+++.++|+.|++.|++++|+||++...+...++.+|+. |+.+++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~ 160 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP 160 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCC
Confidence 333433332210 12245566799999999999999999999999999999999998 999998876644
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 196 KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
||+|+.|..+++++|++|++|++|||+. +|+++|+++
T Consensus 161 KP~p~~~~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~a 197 (197)
T TIGR01548 161 KPNPEPLILAAKALGVEACHAAMVGDTV-DDIITGRKA 197 (197)
T ss_pred CcCHHHHHHHHHHhCcCcccEEEEeCCH-HHHHHHHhC
Confidence 9999999999999999999999999999 999999874
No 22
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.92 E-value=9.8e-24 Score=164.63 Aligned_cols=157 Identities=17% Similarity=0.310 Sum_probs=117.1
Q ss_pred EEEecCCCccCCcccHHHHHHHHc----CCch--HHHHH-hcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCcc
Q 026634 71 VVFDMDGTLTVPVIDFPAMYRAVL----GEDE--YKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQ 143 (235)
Q Consensus 71 vifDlDGTL~d~~~~~~~~~~~~l----g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (235)
|+|||||||+|+...+.+++++++ |.+. .+..+ ..+.......+.+ ......... ....+. .......
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~---~~~~~~-~~~~~~~ 75 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRIM-GLPLEMEEP---FVRESY-RLAGEVE 75 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHHHc-CCCHHHHHH---HHHHHH-Hhhcccc
Confidence 689999999999998888887664 4322 22222 2333332333322 111111111 111222 2234578
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCcEEEEc
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~~v~iG 220 (235)
++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++. ...||+|+.|+.+++++|++|++|+|||
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ig 155 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVG 155 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEc
Confidence 9999999999999999999999999999999999999997 899888765 4789999999999999999999999999
Q ss_pred CCchhhHHHHhhh
Q 026634 221 DSLKDDIDVVFNT 233 (235)
Q Consensus 221 Ds~~~Di~~A~~~ 233 (235)
|+. +|+++|+++
T Consensus 156 D~~-~Di~aA~~~ 167 (205)
T TIGR01454 156 DAV-TDLASARAA 167 (205)
T ss_pred CCH-HHHHHHHHc
Confidence 999 999999874
No 23
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.92 E-value=7.1e-24 Score=162.70 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=116.0
Q ss_pred EEEEecCCCccCCcccHHHHHHHHc---CCchH-HH-HHhcCCchHHHHHHhhc-----cChhHHHHHHHHHHH-HHHhc
Q 026634 70 GVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY-KR-VKAENPTGIDILHHIES-----WSPDLQRHAYQTIAD-FERQG 138 (235)
Q Consensus 70 ~vifDlDGTL~d~~~~~~~~~~~~l---g~~~~-~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~ 138 (235)
+|+||+||||+|+...+..+|.+++ |.+.. .. ....+.........+.. .+.....+..+.... |.+..
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998888887655 65531 21 22233334444433321 222223333222222 22211
Q ss_pred --cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCC
Q 026634 139 --LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 139 --~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~ 213 (235)
.....++||+.++|+.|+++|++++|+||+.. ....++.+|+. |+.+++++. ...||+|++|++++++++++|
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~ 158 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSP 158 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCH
Confidence 12347899999999999999999999998753 46678999998 899887654 589999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHhhh
Q 026634 214 NEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 214 ~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|||+. +|+++|+++
T Consensus 159 ~~~v~vgD~~-~di~aA~~a 177 (185)
T TIGR01990 159 SECIGIEDAQ-AGIEAIKAA 177 (185)
T ss_pred HHeEEEecCH-HHHHHHHHc
Confidence 9999999999 999999874
No 24
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=2.1e-23 Score=165.01 Aligned_cols=167 Identities=25% Similarity=0.363 Sum_probs=125.7
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHH-hcCCchHHHHHHhhc-----cChhHHHHHHHHHHH-
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIES-----WSPDLQRHAYQTIAD- 133 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~- 133 (235)
+++++|+||+||||+|+...+..++..++ |.+. ....+ ..+............ ...............
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH 83 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 45899999999999999877777776655 5542 22222 233333344433322 233333333333333
Q ss_pred HHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcC
Q 026634 134 FERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWE 210 (235)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~ 210 (235)
+.........++||+.++++.|++.|++++++||+....+..+++.+|+. |+.+++++.. ..||+|++++.++++++
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 163 (226)
T PRK13222 84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLG 163 (226)
T ss_pred HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcC
Confidence 33333345689999999999999999999999999999999999999987 8888887654 79999999999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|++|||+. +|+++|+++
T Consensus 164 ~~~~~~i~igD~~-~Di~~a~~~ 185 (226)
T PRK13222 164 LDPEEMLFVGDSR-NDIQAARAA 185 (226)
T ss_pred CChhheEEECCCH-HHHHHHHHC
Confidence 9999999999999 999999874
No 25
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.91 E-value=1.4e-23 Score=162.92 Aligned_cols=92 Identities=22% Similarity=0.301 Sum_probs=85.6
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
...++||+.++|+.|+++|++++++||++...+...++.+|+. |+.+++++. +..||+|++|+.+++++|++|++|+
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 4578999999999999999999999999999999999999997 999888764 4899999999999999999999999
Q ss_pred EEcCCchhhHHHHhhh
Q 026634 218 MVGDSLKDDIDVVFNT 233 (235)
Q Consensus 218 ~iGDs~~~Di~~A~~~ 233 (235)
+|||+. +|+.+|+++
T Consensus 170 ~vgD~~-~Di~~A~~~ 184 (198)
T TIGR01428 170 FVASNP-WDLGGAKKF 184 (198)
T ss_pred EEeCCH-HHHHHHHHC
Confidence 999999 999999864
No 26
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.91 E-value=5.7e-23 Score=160.06 Aligned_cols=164 Identities=17% Similarity=0.189 Sum_probs=113.7
Q ss_pred eEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHh--------------c----CCchHH----HHHH-hhccC
Q 026634 69 RGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKA--------------E----NPTGID----ILHH-IESWS 120 (235)
Q Consensus 69 k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~--------------~----~~~~~~----~~~~-~~~~~ 120 (235)
|+|+||+||||+|+...+.+++.+++ |.+. ...... . +....+ .... +....
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999888888777765 5542 111100 0 111111 1111 11111
Q ss_pred hhHHHHHHHHHHHHHHhc--cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-CCCC
Q 026634 121 PDLQRHAYQTIADFERQG--LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPY 195 (235)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-~~~~ 195 (235)
........+....+.+.. .....++||+.++|+.|+++|++++|+||+... ....++.+|+. |+.+++++ .+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~ 159 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAE 159 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCC
Confidence 111112222222222222 123478999999999999999999999998765 47788999987 99988765 4589
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 196 KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
||+|++|..+++++|++|++|++|||+..+|+.+|+++
T Consensus 160 KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~a 197 (203)
T TIGR02252 160 KPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAA 197 (203)
T ss_pred CCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHc
Confidence 99999999999999999999999999964799999874
No 27
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.91 E-value=3.9e-23 Score=163.08 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=118.7
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhc-CCchHHHHHHhhc-cC-hhHHHHHHHHHH-HHHHh
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAE-NPTGIDILHHIES-WS-PDLQRHAYQTIA-DFERQ 137 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~ 137 (235)
.+|+|+||+||||+|+...+.++|.+.+ |.+. ......+ +.........+.. .. ....+.+...+. .+...
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVARL 82 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999887777777765 6543 2222332 3334444443322 11 111222222222 22222
Q ss_pred ccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EE-EEEecC-CCCCCCChHHHHHHHHHcCCCC
Q 026634 138 GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS-PALSRE-FRPYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 138 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~-~i~~~~-~~~~KP~~~~~~~~~~~l~~~~ 213 (235)
......++||+.++|+.| +++++|+||+....+...++.+|+. |+ .+++++ ....||+|++|..+++++|+.|
T Consensus 83 ~~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p 159 (221)
T PRK10563 83 FDSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNV 159 (221)
T ss_pred HHccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCH
Confidence 234568999999999998 4899999999999999999999997 75 567764 5689999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHhhh
Q 026634 214 NEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 214 ~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|||+. .|+++|+++
T Consensus 160 ~~~l~igDs~-~di~aA~~a 178 (221)
T PRK10563 160 ENCILVDDSS-AGAQSGIAA 178 (221)
T ss_pred HHeEEEeCcH-hhHHHHHHC
Confidence 9999999999 999999864
No 28
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.90 E-value=2.1e-23 Score=157.97 Aligned_cols=160 Identities=20% Similarity=0.317 Sum_probs=118.3
Q ss_pred EEEecCCCccCCcccHHHHHHHHc----CCch-HHHHH-hcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCccc
Q 026634 71 VVFDMDGTLTVPVIDFPAMYRAVL----GEDE-YKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQI 144 (235)
Q Consensus 71 vifDlDGTL~d~~~~~~~~~~~~l----g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (235)
|+||+||||+|+...+.+++...+ |.+. ....+ .......+....+............+.+.++ .......+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGIDPEEIQELFREY--NLESKLQP 78 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHGGEEE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchhHHHHHHHhhhh--hhhhccch
Confidence 789999999998886666666532 4442 12222 2222222333333222222222233333333 12256789
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-CCCCCCChHHHHHHHHHcCCCCCcEEEEcC
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-~~~~KP~~~~~~~~~~~l~~~~~~~v~iGD 221 (235)
+||+.++|+.|+++|++++++||++...+...++.+|+. |+.+++++ .+..||++++|+.+++++|++|++|++|||
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD 158 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGD 158 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEES
T ss_pred hhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeC
Confidence 999999999999999999999999999999999999998 99988765 558999999999999999999999999999
Q ss_pred CchhhHHHHhhh
Q 026634 222 SLKDDIDVVFNT 233 (235)
Q Consensus 222 s~~~Di~~A~~~ 233 (235)
+. .|+++|+++
T Consensus 159 ~~-~d~~~A~~~ 169 (176)
T PF13419_consen 159 SP-SDVEAAKEA 169 (176)
T ss_dssp SH-HHHHHHHHT
T ss_pred CH-HHHHHHHHc
Confidence 99 999999874
No 29
>PRK09449 dUMP phosphatase; Provisional
Probab=99.90 E-value=1.4e-22 Score=160.16 Aligned_cols=94 Identities=27% Similarity=0.320 Sum_probs=83.1
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCC-CC
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQ-PN 214 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~-~~ 214 (235)
.....++||+.++|+.|+ .|++++|+||+....+...++.+|+. |+.+++++. +..||+|++|..+++++|+. ++
T Consensus 91 ~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 169 (224)
T PRK09449 91 AEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRS 169 (224)
T ss_pred hhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcc
Confidence 334679999999999999 57999999999999999999999997 999887764 58999999999999999985 58
Q ss_pred cEEEEcCCchhhHHHHhhh
Q 026634 215 EVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 215 ~~v~iGDs~~~Di~~A~~~ 233 (235)
+|+||||+..+|+++|+++
T Consensus 170 ~~~~vgD~~~~Di~~A~~a 188 (224)
T PRK09449 170 RVLMVGDNLHSDILGGINA 188 (224)
T ss_pred cEEEEcCCcHHHHHHHHHC
Confidence 9999999973599999874
No 30
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.90 E-value=6.3e-23 Score=160.76 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=109.0
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCCc---hHHHHHhc-CCchHHHHHHhhccChhHHHHHHHHHHH----------
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGED---EYKRVKAE-NPTGIDILHHIESWSPDLQRHAYQTIAD---------- 133 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 133 (235)
+|+|+|||||||+|+.. ..+.|...++.. .......+ +.......+.+. .......++.+...+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLKDFIVTVNITGPDFNPWARTFE-RGELTAEAFDGLFRHEYGLRLGHDV 79 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCccHHHHHHhcCCCCChHHHHHH-cCCCCHHHHHHHHHHHhccccCCCc
Confidence 58999999999999876 667777765443 22222222 222222222111 111111111111111
Q ss_pred ----HHH-hccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhH--HHHHHhhcCce--EEEEEecC-CCCCCCChHHHH
Q 026634 134 ----FER-QGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA--VDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLL 203 (235)
Q Consensus 134 ----~~~-~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~--~~~~~~~lgl~--f~~i~~~~-~~~~KP~~~~~~ 203 (235)
+.. .......++||+.++|+.|+++|++++|+||+.... ....+...++. |+.+++++ .+..||+|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~ 159 (211)
T TIGR02247 80 RIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQ 159 (211)
T ss_pred CchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHH
Confidence 111 111246789999999999999999999999987543 22333445664 89888765 457899999999
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 204 HICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 204 ~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+++++|++|++|+||||+. .|+.+|+++
T Consensus 160 ~~~~~~g~~~~~~l~i~D~~-~di~aA~~a 188 (211)
T TIGR02247 160 LMLERLGVAPEECVFLDDLG-SNLKPAAAL 188 (211)
T ss_pred HHHHHcCCCHHHeEEEcCCH-HHHHHHHHc
Confidence 99999999999999999999 999999874
No 31
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.90 E-value=2.1e-22 Score=159.09 Aligned_cols=165 Identities=21% Similarity=0.198 Sum_probs=114.8
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHc---CCchH-HHHHhcCCchHHHHHHhh--ccChhH-----HHHHH--------
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY-KRVKAENPTGIDILHHIE--SWSPDL-----QRHAY-------- 128 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~-------- 128 (235)
+|+|+||+||||+|+...+.+++.+++ |.+.. .....+............ ...... .....
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 479999999999999987776666654 55431 111111000111111110 011110 00000
Q ss_pred --HHHHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHH
Q 026634 129 --QTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLL 203 (235)
Q Consensus 129 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~ 203 (235)
.....+.+.......++||+.++|+.|+++ ++++++||+....+...++.+|+. |+.+++++. +..||+|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~ 159 (224)
T TIGR02254 81 EALLNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFN 159 (224)
T ss_pred HHHHHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHH
Confidence 112223332223457999999999999999 999999999999999999999997 999988654 57899999999
Q ss_pred HHHHHc-CCCCCcEEEEcCCchhhHHHHhhh
Q 026634 204 HICSTW-EVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 204 ~~~~~l-~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+++++ |++|++|+||||+..+|+.+|+++
T Consensus 160 ~~~~~~~~~~~~~~v~igD~~~~di~~A~~~ 190 (224)
T TIGR02254 160 YALERMPKFSKEEVLMIGDSLTADIKGGQNA 190 (224)
T ss_pred HHHHHhcCCCchheEEECCCcHHHHHHHHHC
Confidence 999999 999999999999973599999864
No 32
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=2.1e-22 Score=164.40 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=113.8
Q ss_pred ceEEEEecCCCccCCc-ccHHHHHHHHc---CCch----HHH---HHhcCCchHHHHHHhh--ccC----------hhHH
Q 026634 68 LRGVVFDMDGTLTVPV-IDFPAMYRAVL---GEDE----YKR---VKAENPTGIDILHHIE--SWS----------PDLQ 124 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~-~~~~~~~~~~l---g~~~----~~~---~~~~~~~~~~~~~~~~--~~~----------~~~~ 124 (235)
+++|+|||||||+|+. ..+..+|.+++ |.+. ... ....+.........+. .+. +...
T Consensus 40 ~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 119 (286)
T PLN02779 40 PEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKDEEER 119 (286)
T ss_pred CcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCccchhh
Confidence 6999999999999999 87777777766 6621 111 1222333222222221 111 1111
Q ss_pred HHH----HHHHHH-HHHhccC-CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc-e----EEEEEecC-C
Q 026634 125 RHA----YQTIAD-FERQGLD-RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI-T----FSPALSRE-F 192 (235)
Q Consensus 125 ~~~----~~~~~~-~~~~~~~-~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl-~----f~~i~~~~-~ 192 (235)
... ...... |.+.... ...++||+.++|+.|+++|++++|+||+....+..+++.++. . |+.+ +++ .
T Consensus 120 ~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~ 198 (286)
T PLN02779 120 KELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDV 198 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-ecccc
Confidence 111 111122 2222222 247999999999999999999999999999999888887642 2 4444 544 4
Q ss_pred CCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 193 RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 193 ~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
...||+|++|..+++++|++|++|++|||+. +|+++|+++
T Consensus 199 ~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~-~Di~aA~~a 238 (286)
T PLN02779 199 PKKKPDPDIYNLAAETLGVDPSRCVVVEDSV-IGLQAAKAA 238 (286)
T ss_pred CCCCCCHHHHHHHHHHhCcChHHEEEEeCCH-HhHHHHHHc
Confidence 5789999999999999999999999999999 999999874
No 33
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.90 E-value=2.8e-22 Score=149.42 Aligned_cols=148 Identities=24% Similarity=0.336 Sum_probs=107.4
Q ss_pred EEEEecCCCccCCcccHHHHHHHHc---CCchHHHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCccccc
Q 026634 70 GVVFDMDGTLTVPVIDFPAMYRAVL---GEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMP 146 (235)
Q Consensus 70 ~vifDlDGTL~d~~~~~~~~~~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (235)
+|+||+||||+|+...+..+|.+++ |..........+. ...........++++.. .......++
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~ 67 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGL------------AEELLYRIATSFEELLG-YDAEEAYIR 67 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHcc------------ChHHHHHHHHHHHHHhC-cchhheecc
Confidence 4899999999999887777777764 3321111111111 11111111111222211 223446779
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCch
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLK 224 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~ 224 (235)
|+.++++.|+++|++++++||+....+...++.+ +. |+.+++.+...+||+|++|.++++++|++| +|++|||+.
T Consensus 68 g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~- 144 (154)
T TIGR01549 68 GAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVGDNL- 144 (154)
T ss_pred CHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEeCCH-
Confidence 9999999999999999999999999999988886 44 888888765559999999999999999999 999999999
Q ss_pred hhHHHHhhh
Q 026634 225 DDIDVVFNT 233 (235)
Q Consensus 225 ~Di~~A~~~ 233 (235)
.|+++|+++
T Consensus 145 ~Di~aa~~a 153 (154)
T TIGR01549 145 NDIEGARNA 153 (154)
T ss_pred HHHHHHHHc
Confidence 999999874
No 34
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.89 E-value=1.2e-22 Score=155.95 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=108.9
Q ss_pred EEEEecCCCccCCcccHHHHHHHHc--------CCchHHHHH-------hcCCchHHHHHHhhccChhHHHHHHHHHHHH
Q 026634 70 GVVFDMDGTLTVPVIDFPAMYRAVL--------GEDEYKRVK-------AENPTGIDILHHIESWSPDLQRHAYQTIADF 134 (235)
Q Consensus 70 ~vifDlDGTL~d~~~~~~~~~~~~l--------g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (235)
+|+||+||||+|+...+..++.+.+ |.+...... ..+......... ..... +...+.+...
T Consensus 2 ~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~-~~~~~---~~~~~~~~~~ 77 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLAGLMIL-HEIDA---DEYLRYVHGR 77 (184)
T ss_pred eEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHHHHHHh-hCCCH---HHHHHHHhcc
Confidence 6999999999999887777766432 554422211 111111111111 11111 1112211111
Q ss_pred HHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-C----CCCChHHHHHHHH
Q 026634 135 ERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-P----YKPDPGPLLHICS 207 (235)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~----~KP~~~~~~~~~~ 207 (235)
.......+++|+.++|+.|+ .+++++||++...+...++.+|+. |+.+++++.. . .||+|++|+.+++
T Consensus 78 --~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~ 152 (184)
T TIGR01993 78 --LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALR 152 (184)
T ss_pred --CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHH
Confidence 11124568999999999997 479999999999999999999997 9999987654 3 5999999999999
Q ss_pred HcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 208 TWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 208 ~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|++|+||||+. .|+++|+++
T Consensus 153 ~~~~~~~~~l~vgD~~-~di~aA~~~ 177 (184)
T TIGR01993 153 EAGVDPERAIFFDDSA-RNIAAAKAL 177 (184)
T ss_pred HhCCCccceEEEeCCH-HHHHHHHHc
Confidence 9999999999999999 999999874
No 35
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.88 E-value=7.1e-22 Score=171.50 Aligned_cols=165 Identities=13% Similarity=0.166 Sum_probs=119.9
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHc---C------Cc-h-HHHHHhcCCchHHHHHHhhc-cChhHHHHHHHHHHH
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---G------ED-E-YKRVKAENPTGIDILHHIES-WSPDLQRHAYQTIAD 133 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g------~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 133 (235)
+++++|+|||||||+|+...+.++|.+++ + .. . ....+..+.........+.. ......+.....+..
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 318 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLEIREQTDAYFLE 318 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 45799999999999999998888887765 1 11 1 12223334444444333322 111111222222222
Q ss_pred -HHHhc-cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHc
Q 026634 134 -FERQG-LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTW 209 (235)
Q Consensus 134 -~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l 209 (235)
+.+.. .....++||+.++|+.|+++|++++|+||+....+...++.+|+. |+.+++++....||+|+.|..+++++
T Consensus 319 ~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l 398 (459)
T PRK06698 319 RLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKY 398 (459)
T ss_pred HhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhc
Confidence 22221 234679999999999999999999999999999999999999997 89999988776688999999999887
Q ss_pred CCCCCcEEEEcCCchhhHHHHhhh
Q 026634 210 EVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 210 ~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+ |++|++|||+. +|+.+|+++
T Consensus 399 ~--~~~~v~VGDs~-~Di~aAk~A 419 (459)
T PRK06698 399 D--IKEAAVVGDRL-SDINAAKDN 419 (459)
T ss_pred C--cceEEEEeCCH-HHHHHHHHC
Confidence 5 78999999999 999999874
No 36
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.88 E-value=7.4e-22 Score=157.40 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=76.6
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCcE
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
....++||+.++|+.|++. ++++++||++.. ++..|+. |+.+++++. ...||+|++|..+++++|++|++|
T Consensus 110 ~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 110 SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 3467899999999999976 999999998865 3677887 899887654 588999999999999999999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
+||||+...|+.+|+++
T Consensus 184 ~~VGD~~~~Di~~A~~a 200 (238)
T PRK10748 184 LHVGDDLTTDVAGAIRC 200 (238)
T ss_pred EEEcCCcHHHHHHHHHC
Confidence 99999933999999864
No 37
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.88 E-value=1.4e-21 Score=149.46 Aligned_cols=90 Identities=22% Similarity=0.373 Sum_probs=81.7
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-CCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
..++||+.++|+.|+++|++++++||+.... .....++|+. |+.+++++ .+.+||+|+.|+.+++++|++|++|++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 6899999999999999999999999999887 6666668987 99988765 458999999999999999999999999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+. .|+.+|+++
T Consensus 163 vgD~~-~di~aA~~~ 176 (183)
T TIGR01509 163 VDDSP-AGIEAAKAA 176 (183)
T ss_pred EcCCH-HHHHHHHHc
Confidence 99999 999999864
No 38
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.88 E-value=1.3e-21 Score=151.74 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=106.7
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCCchHHHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHHH-HhccCCccccc
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFE-RQGLDRLQIMP 146 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 146 (235)
+|+|+||+||||+|....+..++++. |.+........+................ ...+....+. +.......++|
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p 77 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKY-NIPTDHILKMIQDERFRDPGELFGCDQE---LAKKLIEKYNNSDFIRYLSAYD 77 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhc-CCCHHHHHHHHhHhhhcCHHHHhcccHH---HHHHHhhhhhHHHHHHhccCCC
Confidence 68999999999999777666666655 7765333333322222112222222222 2222233222 22334467999
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce------EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEc
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT------FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~------f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iG 220 (235)
|+.++|+.|++. ++++++||++........+.+++. |+.+++++.. ||+|++|+.+++++| |++|+|||
T Consensus 78 G~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~--~~kp~~~~~a~~~~~--~~~~v~vg 152 (197)
T PHA02597 78 DALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD--ESKEKLFIKAKEKYG--DRVVCFVD 152 (197)
T ss_pred CHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC--cccHHHHHHHHHHhC--CCcEEEeC
Confidence 999999999987 568888988776666566677664 5667776653 677899999999999 89999999
Q ss_pred CCchhhHHHHhhh
Q 026634 221 DSLKDDIDVVFNT 233 (235)
Q Consensus 221 Ds~~~Di~~A~~~ 233 (235)
|+. +|+.+|+++
T Consensus 153 Ds~-~di~aA~~a 164 (197)
T PHA02597 153 DLA-HNLDAAHEA 164 (197)
T ss_pred CCH-HHHHHHHHH
Confidence 999 999999985
No 39
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=5.3e-21 Score=179.10 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=123.7
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhcCCchHHHHHHhhc---cChhHHHHH-HHHHHHHHH
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIES---WSPDLQRHA-YQTIADFER 136 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~ 136 (235)
.++|+|+|||||||+|+...+.++|.+++ |.+. .......+.........+.. +........ .+..+.+.+
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLE 152 (1057)
T ss_pred CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999998888887766 6543 22333444444444333211 111111111 122222222
Q ss_pred hcc--CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCC-CCCCChHHHHHHHHHcC
Q 026634 137 QGL--DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFR-PYKPDPGPLLHICSTWE 210 (235)
Q Consensus 137 ~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~-~~KP~~~~~~~~~~~l~ 210 (235)
... ....++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++.. ..||+|++|+++++++|
T Consensus 153 ~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 153 KYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred HhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcC
Confidence 211 12347999999999999999999999999999999999999984 8999987755 78999999999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++|++|++|||+. .|+++|+++
T Consensus 233 v~p~e~v~IgDs~-~Di~AA~~a 254 (1057)
T PLN02919 233 VPTSECVVIEDAL-AGVQAARAA 254 (1057)
T ss_pred cCcccEEEEcCCH-HHHHHHHHc
Confidence 9999999999999 999999874
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.86 E-value=8.2e-21 Score=147.47 Aligned_cols=90 Identities=10% Similarity=0.139 Sum_probs=78.9
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh-cCce--EEEEEecC-CCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~-lgl~--f~~i~~~~-~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
.++||+.++|+.|+++|++++|+||++...+...+.. .++. |+.+++++ .+..||+|++|+.+++++|++|++|+|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 5899999999999999999999999998876655544 3554 88888765 558999999999999999999999999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+. .|+.+|+++
T Consensus 164 vgD~~-~di~aA~~a 177 (199)
T PRK09456 164 FDDNA-DNIEAANAL 177 (199)
T ss_pred eCCCH-HHHHHHHHc
Confidence 99999 999999864
No 41
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.86 E-value=4.4e-21 Score=139.35 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=79.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCC--------hhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHc-CCCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNI--------KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTW-EVQP 213 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~--------~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l-~~~~ 213 (235)
.++||+.++|+.|+++|++++++||+. ...+...++.+|+.++.++... ...||+|++|+.+++++ +++|
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~KP~~~~~~~~~~~~~~~~~ 103 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP-HCRKPKPGMFLEALKRFNEIDP 103 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCChHHHHHHHHHcCCCCh
Confidence 689999999999999999999999998 7788889999999855544433 57799999999999999 5999
Q ss_pred CcEEEEcC-CchhhHHHHhhh
Q 026634 214 NEVMMVGD-SLKDDIDVVFNT 233 (235)
Q Consensus 214 ~~~v~iGD-s~~~Di~~A~~~ 233 (235)
++|+|||| +. +|+.+|+++
T Consensus 104 ~~~v~IGD~~~-~Di~~A~~~ 123 (132)
T TIGR01662 104 EESVYVGDQDL-TDLQAAKRA 123 (132)
T ss_pred hheEEEcCCCc-ccHHHHHHC
Confidence 99999999 68 999999864
No 42
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.86 E-value=3.7e-22 Score=151.92 Aligned_cols=84 Identities=27% Similarity=0.368 Sum_probs=77.3
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
...++||+.++|+ +++|+||++...+...++++|+. |+.+++++. +..||+|++|+.+++++|++|++|+
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 4579999999998 38899999999999999999998 888888775 5899999999999999999999999
Q ss_pred EEcCCchhhHHHHhh
Q 026634 218 MVGDSLKDDIDVVFN 232 (235)
Q Consensus 218 ~iGDs~~~Di~~A~~ 232 (235)
||||+. +|+.+|++
T Consensus 161 ~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 161 MVAAHQ-WDLIGARK 174 (175)
T ss_pred eEecCh-hhHHHHhc
Confidence 999999 99999986
No 43
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.86 E-value=6.3e-21 Score=151.09 Aligned_cols=92 Identities=25% Similarity=0.318 Sum_probs=84.9
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-CCCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-~~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
..+++|++.+.|+.++++ ++++++||+....+...+..+|+. |+.+++++ .+..||+|++|+.+++++|++|++|+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 468999999999999999 999999999999999999999987 99988755 56899999999999999999999999
Q ss_pred EEcCCchhhHHHHhhh
Q 026634 218 MVGDSLKDDIDVVFNT 233 (235)
Q Consensus 218 ~iGDs~~~Di~~A~~~ 233 (235)
||||+..+||.+|+++
T Consensus 176 ~VgD~~~~di~gA~~~ 191 (229)
T COG1011 176 FVGDSLENDILGARAL 191 (229)
T ss_pred EECCChhhhhHHHHhc
Confidence 9999998888999874
No 44
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.85 E-value=5.6e-21 Score=141.26 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=76.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCCh---------------hHHHHHHhhcCceEE-EEEe----cC-CCCCCCChHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGITFS-PALS----RE-FRPYKPDPGP 201 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~---------------~~~~~~~~~lgl~f~-~i~~----~~-~~~~KP~~~~ 201 (235)
.++||+.++++.|+++|++++|+||++. ..+...++.+|+.+. .+++ .+ ....||+|++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 7899999999999999999999999874 456677888998733 2332 23 2357999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 202 LLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|+.+++++|++|++|+||||+. .|+++|+++
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~-~Di~~A~~~ 137 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRL-RDLQAARNA 137 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCH-HHHHHHHHC
Confidence 9999999999999999999998 999999874
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.85 E-value=1.2e-20 Score=148.75 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=105.3
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHcCCchH--HHHHhcCCchHHH---H-HHhhccChhHHHHHHHHHHHHHHhcc
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY--KRVKAENPTGIDI---L-HHIESWSPDLQRHAYQTIADFERQGL 139 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~--~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (235)
+++|+++||+||||+++.. +....+.. |.+.. ...+......... . ..+..+..... +..+...
T Consensus 12 ~~~k~iiFD~DGTL~~~~~-~~~l~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 81 (219)
T TIGR00338 12 RSKKLVVFDMDSTLINAET-IDEIAKIA-GVEEEVSEITERAMRGELDFKASLRERVALLKGLPV--------ELLKEVR 81 (219)
T ss_pred ccCCEEEEeCcccCCCchH-HHHHHHHh-CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCH--------HHHHHHH
Confidence 4579999999999999752 33333333 65431 1111111111111 1 11111111111 1111222
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEE-------EEe----cCCCCCCCChHHHHHHH
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSP-------ALS----REFRPYKPDPGPLLHIC 206 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~-------i~~----~~~~~~KP~~~~~~~~~ 206 (235)
....++||+.++++.|+++|++++|+||+....+..+++.+|+. |.. .++ ++...++|++..++.++
T Consensus 82 ~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 82 ENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred hcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 34579999999999999999999999999999999999999987 432 112 12234678999999999
Q ss_pred HHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 207 STWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 207 ~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++++++|++|+||||+. +|+++|+++
T Consensus 162 ~~~~~~~~~~i~iGDs~-~Di~aa~~a 187 (219)
T TIGR00338 162 RKEGISPENTVAVGDGA-NDLSMIKAA 187 (219)
T ss_pred HHcCCCHHHEEEEECCH-HHHHHHHhC
Confidence 99999999999999999 999999864
No 46
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.85 E-value=7.7e-21 Score=147.65 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=103.9
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHcCCchH-HH-HHhcCCchHHHHHHhhccChhHHHHH-HHHHHHHHHhccCCcc
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY-KR-VKAENPTGIDILHHIESWSPDLQRHA-YQTIADFERQGLDRLQ 143 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 143 (235)
++|+|+||+||||+|+...+.. ....+|.+.. .. .+.+.............. ....... ................
T Consensus 3 ~~k~viFD~DGTLid~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSSWEY-LHRRLETCGLAKKNAELFFSGRISYEEWARLD-ASLWKRRSGRLRREEVEEIFKEIS 80 (201)
T ss_pred cceEEEEeCCCCCcCCccHHHH-HHHHhCchHHHHHHHHHHHcCCCCHHHHHHHH-HHHHhhcccCCCHHHHHHHHHhCC
Confidence 4799999999999997755443 3333365531 11 111111111111111000 0000000 0001111111223457
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEec-CCCCC----------CCChHHHHHHHHHcC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSR-EFRPY----------KPDPGPLLHICSTWE 210 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~-~~~~~----------KP~~~~~~~~~~~l~ 210 (235)
++||+.++++.|+++|++++|+||+....++.+++.+|+. |...+.. +.+.. +++++.+..+++++|
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~~ 160 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRELN 160 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999987 5444332 23222 234468889999999
Q ss_pred CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+++++|+||||+. +|+++|+++
T Consensus 161 ~~~~~~i~iGDs~-~D~~~a~~a 182 (201)
T TIGR01491 161 PSLTETVAVGDSK-NDLPMFEVA 182 (201)
T ss_pred CCHHHEEEEcCCH-hHHHHHHhc
Confidence 9999999999999 999999864
No 47
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.85 E-value=8.6e-21 Score=145.17 Aligned_cols=91 Identities=24% Similarity=0.264 Sum_probs=77.1
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCCh---------------hHHHHHHhhcCceEEEEEec-----C-CCCCCCChH
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGITFSPALSR-----E-FRPYKPDPG 200 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~---------------~~~~~~~~~lgl~f~~i~~~-----~-~~~~KP~~~ 200 (235)
+.++||+.++|+.|+++|++++|+||+.. ..+...++.+|+.|+.++.+ + ....||+|.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~ 107 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPG 107 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHH
Confidence 37999999999999999999999999863 33455667778777766542 2 247899999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 201 PLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+|..+++++|++|++|+||||+. +|+.+|+++
T Consensus 108 ~~~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~a 139 (181)
T PRK08942 108 MLLSIAERLNIDLAGSPMVGDSL-RDLQAAAAA 139 (181)
T ss_pred HHHHHHHHcCCChhhEEEEeCCH-HHHHHHHHC
Confidence 99999999999999999999999 999999874
No 48
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.84 E-value=3.2e-21 Score=139.58 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=78.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
...|.+.+++..++++|+++.|+||+.+..+..+++.+|++|-.- ..||.+..|.++++++++++++|+||||+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~------A~KP~~~~fr~Al~~m~l~~~~vvmVGDq 119 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYR------AKKPFGRAFRRALKEMNLPPEEVVMVGDQ 119 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeec------ccCccHHHHHHHHHHcCCChhHEEEEcch
Confidence 678999999999999999999999999999999999999874332 58999999999999999999999999999
Q ss_pred chhhHHHHhhh
Q 026634 223 LKDDIDVVFNT 233 (235)
Q Consensus 223 ~~~Di~~A~~~ 233 (235)
..+|+.+|+++
T Consensus 120 L~TDVlggnr~ 130 (175)
T COG2179 120 LFTDVLGGNRA 130 (175)
T ss_pred hhhhhhccccc
Confidence 99999999864
No 49
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.84 E-value=1.9e-20 Score=142.55 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=76.8
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCCh---------------hHHHHHHhhcCceEEEEEec------------CCCC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGITFSPALSR------------EFRP 194 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~---------------~~~~~~~~~lgl~f~~i~~~------------~~~~ 194 (235)
..++||+.++|+.|+++|++++|+||++. ......+..+++.|+.++.+ +...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 104 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDC 104 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCC
Confidence 37899999999999999999999999984 33445667777777665532 2236
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+||+|++|..+++++|++|++|+||||+. +|+++|+++
T Consensus 105 ~KP~p~~~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~a 142 (176)
T TIGR00213 105 RKPKPGMLLQARKELHIDMAQSYMVGDKL-EDMQAGVAA 142 (176)
T ss_pred CCCCHHHHHHHHHHcCcChhhEEEEcCCH-HHHHHHHHC
Confidence 89999999999999999999999999999 999999864
No 50
>PLN02811 hydrolase
Probab=99.83 E-value=1.2e-19 Score=143.10 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=110.7
Q ss_pred cCCCccCCcccHHHHHHHHc---CCch-HHHHH-hcCCchHHHHHHhhc---cCh-hHHHHHHHHHHHHHHhccCCcccc
Q 026634 75 MDGTLTVPVIDFPAMYRAVL---GEDE-YKRVK-AENPTGIDILHHIES---WSP-DLQRHAYQTIADFERQGLDRLQIM 145 (235)
Q Consensus 75 lDGTL~d~~~~~~~~~~~~l---g~~~-~~~~~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
|||||+|+...+.++|.+++ |.+. ..... ..+.........+.. ... .....+......+.........++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 79999999998888888776 5543 22223 334444443333321 211 111222222333333323346789
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHH-HhhcCce--EEEEEecC--CC-CCCCChHHHHHHHHHcC---CCCCcE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLF-HNRFGIT--FSPALSRE--FR-PYKPDPGPLLHICSTWE---VQPNEV 216 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~-~~~lgl~--f~~i~~~~--~~-~~KP~~~~~~~~~~~l~---~~~~~~ 216 (235)
||+.++|+.|+++|++++|+||+........ .+..++. |+.+++++ .. ..||+|++|..++++++ ++|++|
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 9999999999999999999999987655443 3334554 88888877 43 78999999999999997 999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
+||||+. .|+++|+++
T Consensus 161 v~IgDs~-~di~aA~~a 176 (220)
T PLN02811 161 LVFEDAP-SGVEAAKNA 176 (220)
T ss_pred EEEeccH-hhHHHHHHC
Confidence 9999999 999999864
No 51
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.83 E-value=1e-19 Score=136.84 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChh------------HHHHHHhhcCceEEEEEecCC-CCCCCChHHHHHHHHHcC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE------------AVDLFHNRFGITFSPALSREF-RPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~------------~~~~~~~~lgl~f~~i~~~~~-~~~KP~~~~~~~~~~~l~ 210 (235)
++||+.++|+.|+++|++++|+||++.. .+..+++.+|+.++.+++++. ..+||+|++++.+++++|
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~ 122 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYN 122 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcC
Confidence 7899999999999999999999998763 467788999998655665554 368999999999999999
Q ss_pred --CCCCcEEEEcCCc-------hhhHHHHhhh
Q 026634 211 --VQPNEVMMVGDSL-------KDDIDVVFNT 233 (235)
Q Consensus 211 --~~~~~~v~iGDs~-------~~Di~~A~~~ 233 (235)
+++++++||||+. .+|+++|+++
T Consensus 123 ~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~a 154 (166)
T TIGR01664 123 SPIKMTRSFYVGDAAGRKLDFSDADIKFAKNL 154 (166)
T ss_pred CCCCchhcEEEECCCCCCCCCchhHHHHHHHC
Confidence 9999999999985 2699999864
No 52
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.82 E-value=1.6e-19 Score=148.86 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=106.5
Q ss_pred CCCceEEEEecCCCccCCcccHHHHHHHHcCCch--HHHHHhcCCchHHHHHHh----hccChhHHHHHHHHHHHHHHhc
Q 026634 65 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE--YKRVKAENPTGIDILHHI----ESWSPDLQRHAYQTIADFERQG 138 (235)
Q Consensus 65 ~~~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 138 (235)
...+++++|||||||+.. ..+.+..+.. |... ....+........+.+.+ ..+.... +...+..
T Consensus 107 ~~~~~LvvfDmDGTLI~~-e~i~eia~~~-g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~--------~~il~~v 176 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI-ECIDEIAKLA-GTGEEVAEVTERAMRGELDFEASLRQRVATLKGAD--------ANILQQV 176 (322)
T ss_pred ccCCCEEEEECCCCCcch-HHHHHHHHHh-CCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCC--------HHHHHHH
Confidence 356899999999999833 2333333333 6643 222222222222222111 1111110 0111112
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EE-------EEE----ecCCCCCCCChHHHHHH
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS-------PAL----SREFRPYKPDPGPLLHI 205 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~-------~i~----~~~~~~~KP~~~~~~~~ 205 (235)
....+++||+.++++.|++.|++++|+|++.....+.+.+.+|++ +. ..+ .++...+|||++.++.+
T Consensus 177 ~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~l 256 (322)
T PRK11133 177 RENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRL 256 (322)
T ss_pred HHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHH
Confidence 234679999999999999999999999999999899999999986 21 112 22344679999999999
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++++|+++++|++|||+. ||+.|++++
T Consensus 257 a~~lgi~~~qtIaVGDg~-NDl~m~~~A 283 (322)
T PRK11133 257 AQEYEIPLAQTVAIGDGA-NDLPMIKAA 283 (322)
T ss_pred HHHcCCChhhEEEEECCH-HHHHHHHHC
Confidence 999999999999999999 999999753
No 53
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=140.63 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=82.9
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEe-cCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALS-REFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~-~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
......+++.++++.||++|..++++||.+... +..+..+|+. ||+++. ++.+..||+|++|+.+++.+|+.|++|
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFDDRL-RLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCcHHH-HHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 355678889999999999999999999888664 4788888987 999774 677899999999999999999999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
++|||+..||+++|+++
T Consensus 189 vhIgD~l~nD~~gA~~~ 205 (237)
T KOG3085|consen 189 VHIGDLLENDYEGARNL 205 (237)
T ss_pred EEecCccccccHhHHHc
Confidence 99999999999999975
No 54
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.82 E-value=1.1e-19 Score=135.90 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=79.7
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCC---------------hhHHHHHHhhcCceEEEE-Ee-----cCCCCCCCChH
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNI---------------KEAVDLFHNRFGITFSPA-LS-----REFRPYKPDPG 200 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~---------------~~~~~~~~~~lgl~f~~i-~~-----~~~~~~KP~~~ 200 (235)
..++||+.++|+.|+++|++++|+||.. ...+...++.+|+.|+.+ ++ .+....||++.
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~ 107 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIK 107 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 4799999999999999999999999963 456778889999998765 44 23447899999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 201 PLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++..++++++++|++|+||||+. +|+++|+++
T Consensus 108 ~~~~~~~~~~~~~~e~l~IGD~~-~Di~~A~~a 139 (161)
T TIGR01261 108 LLEPYLKKNLIDKARSYVIGDRE-TDMQLAENL 139 (161)
T ss_pred HHHHHHHHcCCCHHHeEEEeCCH-HHHHHHHHC
Confidence 99999999999999999999999 999999864
No 55
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=134.64 Aligned_cols=166 Identities=20% Similarity=0.269 Sum_probs=131.2
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHc---CCch--HHHHHhcCCchHHHHHHhhcc--ChhHHHHHHHHHHHHHHhcc
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIESW--SPDLQRHAYQTIADFERQGL 139 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~l---g~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 139 (235)
.+.+++||+||||+|++..+.+.|.+.+ |.+. ....+..+....+....+..+ ++...+++....+.......
T Consensus 9 ~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~~ 88 (222)
T KOG2914|consen 9 KVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRLF 88 (222)
T ss_pred ceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999998887 5433 344445566666666655422 33445555555555555556
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcC-ce--EEEEEecC--C-CCCCCChHHHHHHHHHcCCCC
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG-IT--FSPALSRE--F-RPYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lg-l~--f~~i~~~~--~-~~~KP~~~~~~~~~~~l~~~~ 213 (235)
....+.||+.++++.|+.+|++++++|+.++...+...++++ +. |+.++.++ . ..+||+|++|..+++.+|.+|
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~ 168 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP 168 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence 677899999999999999999999999999999988888887 43 77766532 3 378999999999999999998
Q ss_pred -CcEEEEcCCchhhHHHHhhh
Q 026634 214 -NEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 214 -~~~v~iGDs~~~Di~~A~~~ 233 (235)
+.|++++|++ ..+++|+++
T Consensus 169 ~~k~lVfeds~-~Gv~aa~aa 188 (222)
T KOG2914|consen 169 PSKCLVFEDSP-VGVQAAKAA 188 (222)
T ss_pred ccceEEECCCH-HHHHHHHhc
Confidence 9999999999 999999864
No 56
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.80 E-value=2e-18 Score=136.03 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=101.6
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCCchHH-HHHhc--CC-chHHHH-HHhhccChhHHHHHHHHHHHHHHhccCCc
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYK-RVKAE--NP-TGIDIL-HHIESWSPDLQRHAYQTIADFERQGLDRL 142 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~-~~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (235)
.++|+||+||||++.+..+ ...++. +.+... ..+.+ +. ...+.. ..+..+.....++.. +......
T Consensus 3 ~~~vifDfDgTi~~~d~~~-~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~ 73 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-AIMKKF-APPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEII-------QFLLETA 73 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-HHHHHh-CHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHH-------HHHHhCC
Confidence 4699999999999888755 344444 322211 11111 11 111222 222222222111111 1112346
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce----E--EEEEecCCC-CCCCChHH----------HHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----F--SPALSREFR-PYKPDPGP----------LLHI 205 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~----f--~~i~~~~~~-~~KP~~~~----------~~~~ 205 (235)
.++||+.++++.|+++|++++|+||+....++.+++.+ +. + +..++++.. ..||.|.. ...+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 89999999999999999999999999999999999887 54 1 333444432 56776653 3578
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+++++..+++|++|||+. +|+.+|+++
T Consensus 153 l~~~~~~~~~~i~iGDs~-~Di~aa~~A 179 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSI-TDLEAAKQA 179 (219)
T ss_pred HHHhccCCCCEEEEeCCH-HHHHHHHHC
Confidence 899999999999999999 999999864
No 57
>PLN02954 phosphoserine phosphatase
Probab=99.79 E-value=2.5e-18 Score=135.93 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=101.2
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHcCCch--HHHHHhcCCc---hHHHHHH-hhccChhHHHHHHHHHHHHHHhccC
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE--YKRVKAENPT---GIDILHH-IESWSPDLQRHAYQTIADFERQGLD 140 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~--~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (235)
++|+|+|||||||+++.. +....++. |.+. ....+.+... ..+.+.. +..+.. ... ....+.+. .
T Consensus 11 ~~k~viFDfDGTL~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~--~ 81 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEG-IDELAEFC-GAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP-SLS----QVEEFLEK--R 81 (224)
T ss_pred cCCEEEEeCCCcccchHH-HHHHHHHc-CChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC-CHH----HHHHHHHH--c
Confidence 379999999999998743 33334443 6632 2222222221 1111111 211111 111 12222222 1
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce----EEE--EE-------ecCC----CCCCCChHHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSP--AL-------SREF----RPYKPDPGPLL 203 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~----f~~--i~-------~~~~----~~~KP~~~~~~ 203 (235)
...++||+.++++.|+++|++++|+|++....++.+++.+|+. |.. .+ +.+. ...++||+.++
T Consensus 82 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 82 PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 2468999999999999999999999999999999999999985 322 11 1111 13567889999
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 204 HICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 204 ~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
++++++|. ++|++|||+. +|+.+|++
T Consensus 162 ~~~~~~~~--~~~i~iGDs~-~Di~aa~~ 187 (224)
T PLN02954 162 HIKKKHGY--KTMVMIGDGA-TDLEARKP 187 (224)
T ss_pred HHHHHcCC--CceEEEeCCH-HHHHhhhc
Confidence 99999885 6899999999 99999876
No 58
>PRK06769 hypothetical protein; Validated
Probab=99.78 E-value=1.3e-18 Score=131.98 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=72.6
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChh--------HHHHHHhhcCce--EEEEE-ecC-CCCCCCChHHHHHHHHHc
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKE--------AVDLFHNRFGIT--FSPAL-SRE-FRPYKPDPGPLLHICSTW 209 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~--------~~~~~~~~lgl~--f~~i~-~~~-~~~~KP~~~~~~~~~~~l 209 (235)
..++||+.++|+.|+++|++++|+||+... .....++.+|+. |.... +++ ....||+|++|.++++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 368999999999999999999999998642 123335666654 22221 223 247899999999999999
Q ss_pred CCCCCcEEEEcCCchhhHHHHhhh
Q 026634 210 EVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 210 ~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|++|++|+||||+. +|+.+|+++
T Consensus 107 ~~~p~~~i~IGD~~-~Di~aA~~a 129 (173)
T PRK06769 107 GLDLTQCAVIGDRW-TDIVAAAKV 129 (173)
T ss_pred CCCHHHeEEEcCCH-HHHHHHHHC
Confidence 99999999999999 999999874
No 59
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.77 E-value=2e-17 Score=129.50 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=83.9
Q ss_pred HHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc---Cce--EEEEEecCCCCCCCChHHHHHH
Q 026634 131 IADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF---GIT--FSPALSREFRPYKPDPGPLLHI 205 (235)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l---gl~--f~~i~~~~~~~~KP~~~~~~~~ 205 (235)
++.+++.......++||+.++|+.|+++|++++|+||+....+...++.. ++. |+.++... ...||+|+.|..+
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~-~g~KP~p~~y~~i 161 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTT-VGLKTEAQSYVKI 161 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeC-cccCCCHHHHHHH
Confidence 44444445556689999999999999999999999999998888887775 343 56555432 3479999999999
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++++|++|++|+||||+. .|+++|+++
T Consensus 162 ~~~lgv~p~e~lfVgDs~-~Di~AA~~A 188 (220)
T TIGR01691 162 AGQLGSPPREILFLSDII-NELDAARKA 188 (220)
T ss_pred HHHhCcChhHEEEEeCCH-HHHHHHHHc
Confidence 999999999999999999 999999874
No 60
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.77 E-value=1.5e-18 Score=125.13 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=76.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCC-ChhHHHHHHhhcC-------ce--EEEEEecCCCCCCCChHHHHHHHHHcC--
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFG-------IT--FSPALSREFRPYKPDPGPLLHICSTWE-- 210 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~-~~~~~~~~~~~lg-------l~--f~~i~~~~~~~~KP~~~~~~~~~~~l~-- 210 (235)
.++||+.++|+.|+++|++++++||+ ....+...++.++ +. |+.+++++ .+|+|+.|..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~---~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGY---WLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcC---CCcHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999 7888888888888 44 77766654 4689999999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+.|++|+||||+. .|+...++.
T Consensus 106 ~~p~~~l~igDs~-~n~~~~~~~ 127 (128)
T TIGR01681 106 LKPKSILFVDDRP-DNNEEVDYY 127 (128)
T ss_pred CCcceEEEECCCH-hHHHHHHhh
Confidence 9999999999999 998877653
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.74 E-value=4.4e-17 Score=127.04 Aligned_cols=91 Identities=15% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEec--CC---CCCCCChHHHHHHHHHcCCC
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSR--EF---RPYKPDPGPLLHICSTWEVQ 212 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~--~~---~~~KP~~~~~~~~~~~l~~~ 212 (235)
....++||+.++++.|+++ ++++|+||+....++..++.+|+. |...+.. +. +..+++|.....++++++..
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~ 143 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSL 143 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHh
Confidence 3457899999999999999 999999999999999999999987 5443322 11 11234445556777777778
Q ss_pred CCcEEEEcCCchhhHHHHhh
Q 026634 213 PNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 213 ~~~~v~iGDs~~~Di~~A~~ 232 (235)
+++|++|||+. +|+.+|++
T Consensus 144 ~~~~v~iGDs~-~D~~~~~a 162 (205)
T PRK13582 144 GYRVIAAGDSY-NDTTMLGE 162 (205)
T ss_pred CCeEEEEeCCH-HHHHHHHh
Confidence 89999999999 99999865
No 62
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.74 E-value=4.6e-17 Score=128.42 Aligned_cols=131 Identities=14% Similarity=0.074 Sum_probs=93.6
Q ss_pred eEEEEecCCCccCCcccHHHHHHHHcCCchHHH--HHhcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCccccc
Q 026634 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKR--VKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMP 146 (235)
Q Consensus 69 k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (235)
-+|+||+||||+|+...+ . .|.+.... .+.+.. ...++.+.........+.+
T Consensus 64 ~aViFDlDgTLlDSs~~~-----~-~G~~~~s~~~~~~l~g--------------------~~~w~~~~~~~~~~s~p~~ 117 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPGF-----W-RGKKTFSPGSEDYLKN--------------------QVFWEKVNNGWDEFSIPKE 117 (237)
T ss_pred eEEEEeCCCccccCcHHH-----h-CCcccCCHHHhhhhcC--------------------hHHHHHHHHhcccCCcchh
Confidence 399999999999998877 1 35442111 110000 1122233333334456788
Q ss_pred CHHHHHHHHHhCCCeEEEEeCC----ChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 147 GTAQLCGFLDSKKIRRGLITRN----IKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~----~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
++.++|+.++++|++++++||. ....++.+++.+|++ |+.+++++.. ..||++. .+++++|+ ++||
T Consensus 118 ~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i----~i~v 190 (237)
T TIGR01672 118 VARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI----RIHY 190 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC----eEEE
Confidence 8999999999999999999998 666788888999998 8888887654 5667654 35567776 7999
Q ss_pred cCCchhhHHHHhhh
Q 026634 220 GDSLKDDIDVVFNT 233 (235)
Q Consensus 220 GDs~~~Di~~A~~~ 233 (235)
||+. +|+.+|+++
T Consensus 191 GDs~-~DI~aAk~A 203 (237)
T TIGR01672 191 GDSD-NDITAAKEA 203 (237)
T ss_pred eCCH-HHHHHHHHC
Confidence 9999 999999764
No 63
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.74 E-value=3.2e-18 Score=128.80 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=79.8
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCC-ChhHHHHHHhhcCc----------e-EEEEEecCCC-CCCCChHHHHHHH
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFGI----------T-FSPALSREFR-PYKPDPGPLLHIC 206 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~-~~~~~~~~~~~lgl----------~-f~~i~~~~~~-~~KP~~~~~~~~~ 206 (235)
....++||+.++|+.|+++|++++|+||+ ....++.+++.+|+ . |+.+++++.. ..||.+.+++.+.
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhh
Confidence 45689999999999999999999999998 88888888888886 3 8888887654 5677777777777
Q ss_pred HHc--CCCCCcEEEEcCCchhhHHHHhhh
Q 026634 207 STW--EVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 207 ~~l--~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+.+ |++|++|+||||+. .|+++|+++
T Consensus 122 ~~~~~gl~p~e~l~VgDs~-~di~aA~~a 149 (174)
T TIGR01685 122 KVDPSVLKPAQILFFDDRT-DNVREVWGY 149 (174)
T ss_pred hcccCCCCHHHeEEEcChh-HhHHHHHHh
Confidence 777 89999999999999 999999864
No 64
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.73 E-value=1.4e-16 Score=122.39 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=74.8
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC---------------------CCCCCC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF---------------------RPYKPD 198 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~---------------------~~~KP~ 198 (235)
..++||+.++++.|+++|++++++||+....++..++.+|+. |+.+++.+. ..+.+|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 589999999999999999999999999999999999999987 888886432 133456
Q ss_pred hHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 199 PGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++.++.+.++. +++|+||||+. +|+.+|+++
T Consensus 151 ~~~~~~~~~~~---~~~~i~iGD~~-~D~~aa~~~ 181 (188)
T TIGR01489 151 GKVIHKLSEPK---YQHIIYIGDGV-TDVCPAKLS 181 (188)
T ss_pred HHHHHHHHhhc---CceEEEECCCc-chhchHhcC
Confidence 77888777665 89999999999 999999864
No 65
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.73 E-value=3e-17 Score=124.10 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=73.9
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCC-hhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNI-KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~-~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGD 221 (235)
.++|++.++|+.|++.|++++++||++ ...+..+++.+|+.+. ....||+|++|..+++++|+++++|+||||
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~------~~~~KP~p~~~~~~l~~~~~~~~~~l~IGD 116 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL------PHAVKPPGCAFRRAHPEMGLTSEQVAVVGD 116 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE------cCCCCCChHHHHHHHHHcCCCHHHEEEECC
Confidence 689999999999999999999999998 6777777788886521 124799999999999999999999999999
Q ss_pred CchhhHHHHhhh
Q 026634 222 SLKDDIDVVFNT 233 (235)
Q Consensus 222 s~~~Di~~A~~~ 233 (235)
+...|+.+|+++
T Consensus 117 s~~~Di~aA~~a 128 (170)
T TIGR01668 117 RLFTDVMGGNRN 128 (170)
T ss_pred cchHHHHHHHHc
Confidence 974699999874
No 66
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.71 E-value=8.4e-17 Score=122.47 Aligned_cols=92 Identities=17% Similarity=0.311 Sum_probs=75.6
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-------------CCCCCCChHHHHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-------------FRPYKPDPGPLLHI 205 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-------------~~~~KP~~~~~~~~ 205 (235)
...++||+.++++.++++|++++|+|++....++.+++.+|+. |...+..+ ...+..|+..+...
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~ 150 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKEL 150 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHH
Confidence 3468899999999999999999999999999999999999987 33222211 11344566788888
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++++|+++++|++|||+. +|+.+++.+
T Consensus 151 ~~~~~~~~~~~~~iGDs~-~D~~~~~~a 177 (177)
T TIGR01488 151 LEESKITLKKIIAVGDSV-NDLPMLKLA 177 (177)
T ss_pred HHHhCCCHHHEEEEeCCH-HHHHHHhcC
Confidence 999999999999999999 999998753
No 67
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.71 E-value=9.1e-17 Score=116.42 Aligned_cols=91 Identities=33% Similarity=0.540 Sum_probs=81.2
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CC----------------CCChHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PY----------------KPDPGP 201 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~----------------KP~~~~ 201 (235)
...+++++.++++.|+++|++++++||+....+...++.+|+. ++.+++.+.. .. ||++..
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDK 101 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHH
Confidence 3579999999999999999999999999999999999999985 6666664432 22 999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 202 LLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+..++++++..++++++|||+. +|+++|++
T Consensus 102 ~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~ 131 (139)
T cd01427 102 LLAALKLLGVDPEEVLMVGDSL-NDIEMAKA 131 (139)
T ss_pred HHHHHHHcCCChhhEEEeCCCH-HHHHHHHH
Confidence 9999999999999999999999 99999987
No 68
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.70 E-value=2.3e-16 Score=122.98 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=103.2
Q ss_pred CceEEEEecCCCccCCcccHHHHHHHHcCCch--HHHHHhcCCchHHHHHH----hhccChhHHHHHHHHHHHHHHhccC
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE--YKRVKAENPTGIDILHH----IESWSPDLQRHAYQTIADFERQGLD 140 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (235)
+.++++|||||||++ ......+...+|... ............++... +..+.........+..+++
T Consensus 4 ~~~L~vFD~D~TLi~--~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~------ 75 (212)
T COG0560 4 MKKLAVFDLDGTLIN--AELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEF------ 75 (212)
T ss_pred ccceEEEecccchhh--HHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhc------
Confidence 468999999999997 222223333335544 22222222222221111 1111111222222222221
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EE-------EEEecCC----CCCCCChHHHHHHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS-------PALSREF----RPYKPDPGPLLHICS 207 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~-------~i~~~~~----~~~KP~~~~~~~~~~ 207 (235)
..++||+.++++.+++.|.+++|+|+++...++.+.+.+|++ +. .++++.. ..++-|...+..+++
T Consensus 76 -~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 -LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred -CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 689999999999999999999999999999999999999998 21 1244432 245567788999999
Q ss_pred HcCCCCCcEEEEcCCchhhHHHHh
Q 026634 208 TWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 208 ~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
++|+++++++++|||. ||+.|=+
T Consensus 155 ~~g~~~~~~~a~gDs~-nDlpml~ 177 (212)
T COG0560 155 ELGIPLEETVAYGDSA-NDLPMLE 177 (212)
T ss_pred HcCCCHHHeEEEcCch-hhHHHHH
Confidence 9999999999999999 9998854
No 69
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.70 E-value=1.8e-17 Score=124.47 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhH
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDI 227 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di 227 (235)
..+..|++.|++++|+||+....++..++.+|+. |+. .||+|+.++.+++++|+++++|++|||+. +|+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~--------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~-nDi 111 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEG--------IKKKTEPYAQMLEEMNISDAEVCYVGDDL-VDL 111 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEec--------CCCCHHHHHHHHHHcCcCHHHEEEECCCH-HHH
Confidence 3478889999999999999999999999999997 442 38999999999999999999999999999 999
Q ss_pred HHHhhh
Q 026634 228 DVVFNT 233 (235)
Q Consensus 228 ~~A~~~ 233 (235)
++++.+
T Consensus 112 ~~~~~a 117 (169)
T TIGR02726 112 SMMKRV 117 (169)
T ss_pred HHHHHC
Confidence 999864
No 70
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.70 E-value=1.9e-17 Score=123.19 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=67.9
Q ss_pred HHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHH
Q 026634 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 151 ~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A 230 (235)
+++.|+++|++++|+||.+...+...++.+|+. ..+.+ .+|+++.++.+++++|+++++|+||||+. +|+.++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~--~~~~~----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~ 108 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT--HLYQG----QSNKLIAFSDILEKLALAPENVAYIGDDL-IDWPVM 108 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC--EEEec----ccchHHHHHHHHHHcCCCHHHEEEECCCH-HHHHHH
Confidence 799999999999999999999999999999986 11221 37899999999999999999999999999 999999
Q ss_pred hhh
Q 026634 231 FNT 233 (235)
Q Consensus 231 ~~~ 233 (235)
+++
T Consensus 109 ~~a 111 (154)
T TIGR01670 109 EKV 111 (154)
T ss_pred HHC
Confidence 864
No 71
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.69 E-value=3.9e-16 Score=117.92 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=111.3
Q ss_pred CceEEEEecCCCccCCcccHHHHHH--------HHcCCchHHHHHhcCCchHHHHHHhhcc----ChhHHHHHHHHHHHH
Q 026634 67 RLRGVVFDMDGTLTVPVIDFPAMYR--------AVLGEDEYKRVKAENPTGIDILHHIESW----SPDLQRHAYQTIADF 134 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~~~~~~~~~--------~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 134 (235)
.+++++||+|+||+.....+..+.+ +-+|.+.....+........+...+.++ ...+..+..+.....
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~~~ 93 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVHGR 93 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhhcc
Confidence 5899999999999987665554444 3337665333332211111111111111 011111111111110
Q ss_pred HHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-------CCCCCChHHHHHH
Q 026634 135 ERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-------RPYKPDPGPLLHI 205 (235)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-------~~~KP~~~~~~~~ 205 (235)
--.+..++.+..+++|-.|++++ .++.||++..++.++++++|+. |+.+++.+. ...||.+.+|+++
T Consensus 94 --LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a 169 (244)
T KOG3109|consen 94 --LPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKA 169 (244)
T ss_pred --CcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHH
Confidence 00123567788899999999885 7899999999999999999999 999988642 2589999999999
Q ss_pred HHHcCCC-CCcEEEEcCCchhhHHHHhhh
Q 026634 206 CSTWEVQ-PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 206 ~~~l~~~-~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++..|+. |.+++||+||. ++|..|+++
T Consensus 170 ~k~agi~~p~~t~FfDDS~-~NI~~ak~v 197 (244)
T KOG3109|consen 170 MKVAGIDSPRNTYFFDDSE-RNIQTAKEV 197 (244)
T ss_pred HHHhCCCCcCceEEEcCch-hhHHHHHhc
Confidence 9999997 99999999999 999999864
No 72
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.69 E-value=2.9e-16 Score=130.45 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=78.7
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCC---------------ChhHHHHHHhhcCceEEEE-Eec-----CCCCCCCC
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRN---------------IKEAVDLFHNRFGITFSPA-LSR-----EFRPYKPD 198 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~---------------~~~~~~~~~~~lgl~f~~i-~~~-----~~~~~KP~ 198 (235)
....++||+.++|..|++.|++++|+||. ....+..+++.+|+.|+.+ ++. +...+||+
T Consensus 27 ~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 27 DKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred ccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCC
Confidence 34589999999999999999999999995 2445666778888887665 442 23478999
Q ss_pred hHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 199 PGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|.++..++++++++|++++||||+. +|+++|+++
T Consensus 107 p~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~a 140 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDRE-TDVQLAENM 140 (354)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHHC
Confidence 9999999999999999999999999 999999864
No 73
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.68 E-value=1.1e-15 Score=118.65 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=91.6
Q ss_pred eEEEEecCCCccCCcccHHHHHHHHcCCchHHHHHhcCCchHHHHH-Hhhcc--ChhHHHHHHHHHHHHHHhccCCcccc
Q 026634 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILH-HIESW--SPDLQRHAYQTIADFERQGLDRLQIM 145 (235)
Q Consensus 69 k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
++++|||||||++. .|.+...+. |................+.. .+.-+ .......+ +.......++
T Consensus 2 ~la~FDlD~TLi~~--~w~~~~~~~-g~~~~~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i--------~~~~~~i~l~ 70 (203)
T TIGR02137 2 EIACLDLEGVLVPE--IWIAFAEKT-GIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDI--------QEVIATLKPL 70 (203)
T ss_pred eEEEEeCCcccHHH--HHHHHHHHc-CCcHHHHHhcCCcCHHHHHHHHHHHHHHCCCCHHHH--------HHHHHhCCCC
Confidence 46999999999965 355444444 75443222211111111111 00000 01111111 1112335789
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EE--------EEEecCCCCCCCChHHHHHHHHHcCCCCCc
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS--------PALSREFRPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~--------~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
||+.++++.+++.| +++|+|++....+..+++.+|++ |. ..+++.....+|.+..+.+.+++.+. +
T Consensus 71 pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~---~ 146 (203)
T TIGR02137 71 EGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY---R 146 (203)
T ss_pred ccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC---C
Confidence 99999999999985 99999999999999999999987 43 12222222345555555555566553 8
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
|++|||+. ||+.+++.+
T Consensus 147 ~v~vGDs~-nDl~ml~~A 163 (203)
T TIGR02137 147 VIAAGDSY-NDTTMLSEA 163 (203)
T ss_pred EEEEeCCH-HHHHHHHhC
Confidence 99999999 999998764
No 74
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.68 E-value=5.1e-16 Score=121.88 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=73.6
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--E---EEEEecCC-CCCCCChHHH----------HH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--F---SPALSREF-RPYKPDPGPL----------LH 204 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f---~~i~~~~~-~~~KP~~~~~----------~~ 204 (235)
...++||+.++++.|+++|++++|+|++....++.+++.++.. + +.++.++. ...||.|..+ ..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 3589999999999999999999999999999999999887543 2 23333332 2567776654 47
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 205 ICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
++++++..+++|+||||+. +|+.+|+++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~-~D~~~a~~A 175 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSV-TDVEAAKQS 175 (214)
T ss_pred HHHHHhhcCCcEEEEeCCH-HHHHHHHhC
Confidence 7788888899999999999 999999753
No 75
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.68 E-value=2.3e-16 Score=130.96 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=79.9
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh----cCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR----FGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~----lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
.+++|+.++|+.|+++|++++|+|+++...+..+++. +++. |+.+.+. .||+|+.++++++++|+.++++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~----~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN----WGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe----cCchHHHHHHHHHHhCCCcCcE
Confidence 4689999999999999999999999999999999998 7776 7776443 6899999999999999999999
Q ss_pred EEEcCCchhhHHHHhhhhC
Q 026634 217 MMVGDSLKDDIDVVFNTFR 235 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~~~ 235 (235)
+||||+. .|+.++++.+|
T Consensus 107 vfidD~~-~d~~~~~~~lp 124 (320)
T TIGR01686 107 LFIDDNP-AERANVKITLP 124 (320)
T ss_pred EEECCCH-HHHHHHHHHCC
Confidence 9999999 99999998654
No 76
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.67 E-value=3.5e-16 Score=122.50 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=77.3
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGD 221 (235)
..++|++.++++.|++.|++++++|+.+...+..+.+.+|+. +.++.++.. +||.+.++..+++.+++++++|+||||
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~-~~~v~a~~~-~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF-DSIVFARVI-GKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC-SEEEEESHE-TTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc-ccccccccc-ccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 357899999999999999999999999999999999999994 222222111 799999999999999999999999999
Q ss_pred CchhhHHHHhhh
Q 026634 222 SLKDDIDVVFNT 233 (235)
Q Consensus 222 s~~~Di~~A~~~ 233 (235)
+. ||+.|++++
T Consensus 204 g~-nD~~al~~A 214 (215)
T PF00702_consen 204 GV-NDAPALKAA 214 (215)
T ss_dssp SG-GHHHHHHHS
T ss_pred CH-HHHHHHHhC
Confidence 99 999999864
No 77
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.67 E-value=1.1e-16 Score=118.33 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=77.7
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFR-PYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
...++||+.++|+.|+ .+++++|+|++....++.+++.+++. |+.+++.+.. ..||+ |.++++++|.+|++|
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~ 118 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNV 118 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcE
Confidence 3578999999999998 57999999999999999999999884 5888887655 67886 999999999999999
Q ss_pred EEEcCCchhhHHHHhh
Q 026634 217 MMVGDSLKDDIDVVFN 232 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~ 232 (235)
++|||+. +|+.+|.+
T Consensus 119 i~i~Ds~-~~~~aa~~ 133 (148)
T smart00577 119 IIIDDSP-DSWPFHPE 133 (148)
T ss_pred EEEECCH-HHhhcCcc
Confidence 9999999 99999863
No 78
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.66 E-value=6.8e-16 Score=134.13 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=78.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCCh------------hHHHHHHhhcCceEEEEEecCC-CCCCCChHHHHHHHHHcC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIK------------EAVDLFHNRFGITFSPALSREF-RPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~------------~~~~~~~~~lgl~f~~i~~~~~-~~~KP~~~~~~~~~~~l~ 210 (235)
++||+.+.|+.|++.|++++|+||... ..+..+++.+|+.|+.+++.+. ..+||+|.++..++++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~ 277 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEAN 277 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcC
Confidence 689999999999999999999999766 3577888999999998887664 478999999999999995
Q ss_pred ----CCCCcEEEEcCCchhhHHHHhh
Q 026634 211 ----VQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 211 ----~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+++++++||||.. .|+++|++
T Consensus 278 ~~~~Id~~~S~~VGDaa-gr~~~g~~ 302 (526)
T TIGR01663 278 DGTEIQEDDCFFVGDAA-GRPANGKA 302 (526)
T ss_pred cccCCCHHHeEEeCCcc-cchHHHHh
Confidence 8999999999999 99988764
No 79
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.65 E-value=2.7e-15 Score=116.68 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=75.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEE-EE-------ecC----CCCCCCChHHHHHHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSP-AL-------SRE----FRPYKPDPGPLLHICST 208 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~-i~-------~~~----~~~~KP~~~~~~~~~~~ 208 (235)
.++|++.++++.++++|++++|+|+++...++.+++.+|++ |.. +. ++. ...+++|...+++++++
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~ 166 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLAE 166 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987 332 11 221 12356677789999999
Q ss_pred cCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 209 WEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 209 l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.++++++|+++|||. +|+++++.+
T Consensus 167 ~~~~~~~~~~~gDs~-~D~~~~~~a 190 (202)
T TIGR01490 167 EQIDLKDSYAYGDSI-SDLPLLSLV 190 (202)
T ss_pred cCCCHHHcEeeeCCc-ccHHHHHhC
Confidence 999999999999999 999998753
No 80
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.62 E-value=5.8e-16 Score=118.49 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHH
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDV 229 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~ 229 (235)
..++.|+++|++++|+||.+...+..+++.+|+. .++. ..++++..++++++++|+++++|+||||+. +|+.+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~--~~f~----g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~ 127 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT--HLYQ----GQSNKLIAFSDLLEKLAIAPEQVAYIGDDL-IDWPV 127 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc--eeec----CCCcHHHHHHHHHHHhCCCHHHEEEECCCH-HHHHH
Confidence 4678888999999999999999999999999976 1122 246778999999999999999999999999 99999
Q ss_pred Hhhh
Q 026634 230 VFNT 233 (235)
Q Consensus 230 A~~~ 233 (235)
|+++
T Consensus 128 a~~a 131 (183)
T PRK09484 128 MEKV 131 (183)
T ss_pred HHHC
Confidence 9864
No 81
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.62 E-value=1.5e-15 Score=112.85 Aligned_cols=129 Identities=21% Similarity=0.307 Sum_probs=99.6
Q ss_pred hcccccccchhhhhhhccccCCC--CccccccccccccccCCCCCCCCceEEEEecCCCccCCcccHHHHHHHHcCCchH
Q 026634 22 YQNHHKFMPLFLSKSFLFLPTRP--FSSISNFTSYMMSSFSPPKPKTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY 99 (235)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~m~~~~~~~~~~~~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~ 99 (235)
..+-..++|.++.+++...+... +.+.. +|+++||.|+||+..
T Consensus 11 ~~~p~l~~P~l~V~si~~I~~~~~~Lk~~G------------------ik~li~DkDNTL~~~----------------- 55 (168)
T PF09419_consen 11 LRNPSLLLPHLYVPSIRDIDFEANHLKKKG------------------IKALIFDKDNTLTPP----------------- 55 (168)
T ss_pred HcCccccCCCEEcCChhhCCcchhhhhhcC------------------ceEEEEcCCCCCCCC-----------------
Confidence 34455678888888877776666 54444 899999999999833
Q ss_pred HHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHhCCCe--EEEEeCC-------Ch
Q 026634 100 KRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIR--RGLITRN-------IK 170 (235)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~--i~i~Sn~-------~~ 170 (235)
....+.|.+.+++++|++.+.. ++|+||+ ..
T Consensus 56 ----------------------------------------~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~ 95 (168)
T PF09419_consen 56 ----------------------------------------YEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDG 95 (168)
T ss_pred ----------------------------------------CcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccH
Confidence 2336778889999999998764 9999998 47
Q ss_pred hHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCC-----CCCcEEEEcCCchhhHHHHhhh
Q 026634 171 EAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEV-----QPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 171 ~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~-----~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
..++.+.+.+|++ +.+- ..|| ..+.++++.++. +|+++++|||+..+|+.+|+++
T Consensus 96 ~~a~~~~~~lgIpvl~h~------~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~ 156 (168)
T PF09419_consen 96 ERAEALEKALGIPVLRHR------AKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRM 156 (168)
T ss_pred HHHHHHHHhhCCcEEEeC------CCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhcc
Confidence 7788888999987 4331 3566 566677777754 5999999999999999999864
No 82
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.59 E-value=4e-15 Score=122.65 Aligned_cols=91 Identities=12% Similarity=0.009 Sum_probs=81.2
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecC--------CCCCCCChHHHHHHHHHcC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE--------FRPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~--------~~~~KP~~~~~~~~~~~l~ 210 (235)
..++|++.++++.|+++|++++++||.+....+..++.+|+. |+.+++.+ ...+||+|..+.+++++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 478999999999999999999999999999999888888776 77777765 3367999999999999999
Q ss_pred C-CCCcEEEEcCCchhhHHHHhhh
Q 026634 211 V-QPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~-~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
. .+++|++|||+. +|+++|+++
T Consensus 266 ~~~~~~~~~vgD~~-~d~~~a~~~ 288 (300)
T PHA02530 266 APKYDVLLAVDDRD-QVVDMWRRI 288 (300)
T ss_pred ccCceEEEEEcCcH-HHHHHHHHh
Confidence 8 689999999999 999999874
No 83
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.59 E-value=1.9e-14 Score=107.92 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=94.6
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCCchHHHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCcccccC
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPG 147 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (235)
.+++++|-||||......+...+.++ .+.||
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~-------------------------------------------------~~~~g 35 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDF-------------------------------------------------QFIPG 35 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHh-------------------------------------------------ccCcc
Confidence 58999999999985544333334444 78999
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC---------------hhHHHHHHhhcCceEEEEEecC------CCCCCCChHHHHHHH
Q 026634 148 TAQLCGFLDSKKIRRGLITRNI---------------KEAVDLFHNRFGITFSPALSRE------FRPYKPDPGPLLHIC 206 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~---------------~~~~~~~~~~lgl~f~~i~~~~------~~~~KP~~~~~~~~~ 206 (235)
+.+.+..|++.|++++++||-. ...+...++..|+.++.++-+. ...+||++.++..++
T Consensus 36 ~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~ 115 (181)
T COG0241 36 VIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSAL 115 (181)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHH
Confidence 9999999999999999999932 3335566677787788776532 237999999999999
Q ss_pred HHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 207 STWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 207 ~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+++++++++.++|||.. +|+++|.|+
T Consensus 116 ~~~~iD~~~s~~VGD~~-~Dlq~a~n~ 141 (181)
T COG0241 116 KEYNIDLSRSYVVGDRL-TDLQAAENA 141 (181)
T ss_pred HHhCCCccceEEecCcH-HHHHHHHHC
Confidence 99999999999999999 999999875
No 84
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.59 E-value=1.7e-14 Score=113.84 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=68.1
Q ss_pred cCCcccccCHHHHHHHHHhCCCeEEEEeCCC----hhHHHHHHhhcCc--e--EEEEEecCCCCCCCChHHHHHHHHHcC
Q 026634 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNI----KEAVDLFHNRFGI--T--FSPALSREFRPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 139 ~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~----~~~~~~~~~~lgl--~--f~~i~~~~~~~~KP~~~~~~~~~~~l~ 210 (235)
.....++||+.++|+.|+++|++++++||.. ....+.+++.+|+ . |+.+++++. ..||.+.. .+++++
T Consensus 110 ~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~-~~K~~K~~---~l~~~~ 185 (237)
T PRK11009 110 DEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDK-PGQYTKTQ---WLKKKN 185 (237)
T ss_pred cccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCC-CCCCCHHH---HHHhcC
Confidence 3456899999999999999999999999953 4566777777999 4 777777765 35666653 555677
Q ss_pred CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+ ++||||+. +|+.+|+++
T Consensus 186 i----~I~IGDs~-~Di~aA~~A 203 (237)
T PRK11009 186 I----RIFYGDSD-NDITAAREA 203 (237)
T ss_pred C----eEEEcCCH-HHHHHHHHc
Confidence 6 89999999 999999764
No 85
>PRK11590 hypothetical protein; Provisional
Probab=99.57 E-value=9.7e-14 Score=108.69 Aligned_cols=90 Identities=11% Similarity=-0.039 Sum_probs=63.8
Q ss_pred cccccCHHHHH-HHHHhCCCeEEEEeCCChhHHHHHHhhcCc---e------EEEEEecCC-CCCCCChHHHHHHHHHcC
Q 026634 142 LQIMPGTAQLC-GFLDSKKIRRGLITRNIKEAVDLFHNRFGI---T------FSPALSREF-RPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 142 ~~~~~~~~~~l-~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl---~------f~~i~~~~~-~~~KP~~~~~~~~~~~l~ 210 (235)
..++||+.+.| +.+++.|++++|+||++...++.+++.+|+ . ++..+++.. +...-..+-...+-+.++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~ 173 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIG 173 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhC
Confidence 46799999999 578889999999999999999999999884 2 222223221 111111222344444557
Q ss_pred CCCCcEEEEcCCchhhHHHHhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+...+.+.|||. +|+.+-..
T Consensus 174 ~~~~~~~aY~Ds~-~D~pmL~~ 194 (211)
T PRK11590 174 TPLRLYSGYSDSK-QDNPLLYF 194 (211)
T ss_pred CCcceEEEecCCc-ccHHHHHh
Confidence 7788899999999 99988653
No 86
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.49 E-value=4.2e-13 Score=107.65 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=78.0
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEE------EecCCC-CCCCCh---------HHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPA------LSREFR-PYKPDP---------GPL 202 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i------~~~~~~-~~KP~~---------~~~ 202 (235)
...+.||+.++++.|+++|++++|+|++....++.+++.+|+. +..+ ++.+.. .++|.| ..+
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 5789999999999999999999999999999999999999985 4444 322222 567777 677
Q ss_pred HHHHHHcC--CCCCcEEEEcCCchhhHHHHhhh
Q 026634 203 LHICSTWE--VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 203 ~~~~~~l~--~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+.+++.++ .++++|++|||+. +|+.||.-+
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~-~Dl~ma~g~ 230 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQ-GDLRMADGV 230 (277)
T ss_pred HHHHHHhCccCCcceEEEECcCh-hhhhHhcCC
Confidence 78889998 8999999999999 999998643
No 87
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.49 E-value=3.9e-13 Score=99.93 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=94.9
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCCch--HHHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCcccc
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE--YKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
.++|+||+|.|++..+ .+.+.-+.+ |... .+..+..-+...++.+.+...... ......-..++. ......+.
T Consensus 16 ~~aVcFDvDSTvi~eE-gIdelA~~~-G~~~~Va~~T~rAMng~~~F~eaL~~Rl~l-lqp~~~qv~~~v--~~~k~~lT 90 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQEE-GIDELAAYC-GVGEAVAEVTRRAMNGEADFQEALAARLSL-LQPLQVQVEQFV--IKQKPTLT 90 (227)
T ss_pred cCeEEEecCcchhHHh-hHHHHHHHh-CchHHHHHHHHHHhCCCCcHHHHHHHHHHH-hcccHHHHHHHH--hcCCCccC
Confidence 6899999999998432 222222222 4433 333333333333333222110000 000001111111 12356789
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceE----------EE--EE-ecCC----CCCCCChHHHHHHHHH
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITF----------SP--AL-SREF----RPYKPDPGPLLHICST 208 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f----------~~--i~-~~~~----~~~KP~~~~~~~~~~~ 208 (235)
||++++++.|+++|.+++++|++.+..+..+...||+++ +. -+ +.+. ..+.-|++.+....+
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk- 169 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRK- 169 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHh-
Confidence 999999999999999999999999999999999999982 11 11 1121 134455667776666
Q ss_pred cCCCCCcEEEEcCCchhhHHHH
Q 026634 209 WEVQPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 209 l~~~~~~~v~iGDs~~~Di~~A 230 (235)
+.....++||||+. +|++|-
T Consensus 170 -~~~~~~~~mvGDGa-tDlea~ 189 (227)
T KOG1615|consen 170 -NYNYKTIVMVGDGA-TDLEAM 189 (227)
T ss_pred -CCChheeEEecCCc-cccccC
Confidence 88889999999999 999874
No 88
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.47 E-value=4.3e-13 Score=103.24 Aligned_cols=84 Identities=19% Similarity=0.375 Sum_probs=63.4
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCC---C--------CCC---CChHHHHHH---HHH
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF---R--------PYK---PDPGPLLHI---CST 208 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~---~--------~~K---P~~~~~~~~---~~~ 208 (235)
+++.++++.+++.|++++|+|+++...++.+++.+|++...+++.+. . .+. -|...++++ ...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 44449999999999999999999999999999999987322332211 0 000 155566666 444
Q ss_pred cCCCCCcEEEEcCCchhhHHHHh
Q 026634 209 WEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 209 l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
+.....+++|||+. +|+.+++
T Consensus 172 -~~~~~~~~~iGDs~-~D~~~lr 192 (192)
T PF12710_consen 172 -DIDPDRVIAIGDSI-NDLPMLR 192 (192)
T ss_dssp -THTCCEEEEEESSG-GGHHHHH
T ss_pred -CCCCCeEEEEECCH-HHHHHhC
Confidence 88999999999999 9999875
No 89
>PRK08238 hypothetical protein; Validated
Probab=99.46 E-value=1.7e-12 Score=112.62 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=95.6
Q ss_pred eEEEEecCCCccCCcccHHHHHHHHcCCchHHHHH--hcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCccccc
Q 026634 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVK--AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMP 146 (235)
Q Consensus 69 k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (235)
.-++||+||||+.++..+.-.+... +..+..... .+.-.+...+.. ........-....++.|
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~~~l-~~~p~~~~~l~~~~~~g~a~lK~--------------~~a~~~~~d~~~lp~~p 75 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIFALL-RRNPLALLRLPLWLLRGKAALKR--------------RLARRVDLDVATLPYNE 75 (479)
T ss_pred CCEEEeCCCCccccchHHHHHHHHH-HhChHHHHHHHHHHHhcHHHHHH--------------HHHhhcCCChhhCCCCh
Confidence 4689999999998876555555444 443322211 111111111110 00000001112345789
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcEEEEcCCchh
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFR-PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~ 225 (235)
|+.++++.++++|++++++|++++..++.+++++|+ |+.+++++.. ..||+++. ..+.+.++ .++++++||+. +
T Consensus 76 ga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl-Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~~yvGDS~-~ 150 (479)
T PRK08238 76 EVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL-FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGFDYAGNSA-A 150 (479)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC-CCEEEeCCCccccCCchHH-HHHHHHhC--ccCeeEecCCH-H
Confidence 999999999999999999999999999999999998 8999988754 55555442 23445555 35689999999 9
Q ss_pred hHHHHhhh
Q 026634 226 DIDVVFNT 233 (235)
Q Consensus 226 Di~~A~~~ 233 (235)
|+.+++.+
T Consensus 151 Dlp~~~~A 158 (479)
T PRK08238 151 DLPVWAAA 158 (479)
T ss_pred HHHHHHhC
Confidence 99998753
No 90
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.44 E-value=1.6e-13 Score=110.56 Aligned_cols=89 Identities=13% Similarity=0.014 Sum_probs=71.3
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC----CCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF----RPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~----~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
++++.+.++.|+..|.+++++||.+..........+|+. |+.+.+... ..+||+|.+|+.+++++|++|++|+|
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~ 201 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVM 201 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEE
Confidence 567788899999999999999998877665555566665 544443221 14799999999999999999999999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+..+|+.+|+++
T Consensus 202 vGD~~~~Di~~a~~~ 216 (257)
T TIGR01458 202 IGDDCRDDVGGAQDC 216 (257)
T ss_pred ECCCcHHHHHHHHHc
Confidence 999955899999864
No 91
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.43 E-value=4.3e-13 Score=99.99 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=67.0
Q ss_pred cc-ccCHHHHHHHHHhCCCeEEEEeCCC--------------hhHHHHHHhhcCceEEEEEecC-CCCCCCChHHHHHHH
Q 026634 143 QI-MPGTAQLCGFLDSKKIRRGLITRNI--------------KEAVDLFHNRFGITFSPALSRE-FRPYKPDPGPLLHIC 206 (235)
Q Consensus 143 ~~-~~~~~~~l~~l~~~g~~i~i~Sn~~--------------~~~~~~~~~~lgl~f~~i~~~~-~~~~KP~~~~~~~~~ 206 (235)
.+ .+++.+.|+.|.+.|+.++|+||-. ...+..+++.+++++...++.. +..+||.+.+++.++
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHH
Confidence 44 4589999999999999999999841 1235667788888865555544 458999999999999
Q ss_pred HHcCC----CCCcEEEEcCCc----------hhhHHHHhhh
Q 026634 207 STWEV----QPNEVMMVGDSL----------KDDIDVVFNT 233 (235)
Q Consensus 207 ~~l~~----~~~~~v~iGDs~----------~~Di~~A~~~ 233 (235)
+.++. +.++++||||.. ..|..-|.|+
T Consensus 108 ~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~ 148 (159)
T PF08645_consen 108 KDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNC 148 (159)
T ss_dssp CCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHH
T ss_pred HhccccccccccceEEEeccCCCCCcccccChhHHHHHHHc
Confidence 99974 999999999973 1566666653
No 92
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.41 E-value=3.9e-13 Score=109.69 Aligned_cols=89 Identities=19% Similarity=0.126 Sum_probs=67.0
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHH-HHHhhcCce--EEEEE---ecCC-CCCCCChHHHHHHHHHcCCCCCcE
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVD-LFHNRFGIT--FSPAL---SREF-RPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~-~~~~~lgl~--f~~i~---~~~~-~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
.++++.++++.|+++|. ++|+||.+..... ..+...|.. |+.+. +.+. ..+||+|.+|..+++++|++|++|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 47789999999999887 7899998764431 122333443 33332 2232 368999999999999999999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
+||||+..+||.+|+++
T Consensus 223 lmIGD~~~tDI~~A~~a 239 (279)
T TIGR01452 223 LMVGDRLETDILFGHRC 239 (279)
T ss_pred EEECCChHHHHHHHHHc
Confidence 99999954999999864
No 93
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.40 E-value=3.3e-12 Score=102.49 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||+|.+|+.+++.+++++++++||||+..+||.+|+++
T Consensus 176 ~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~ 215 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDA 215 (249)
T ss_pred cCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHc
Confidence 4799999999999999999999999999964899999864
No 94
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.39 E-value=3.6e-13 Score=96.79 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=63.8
Q ss_pred HHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 152 CGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 152 l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
++.|.+.|++++|+|+.+...++...+.+|+. .++.+ .+.+...|..+++++++.+++|.||||.. +|+.+-+
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~--~~~qG----~~dK~~a~~~L~~~~~l~~e~~ayiGDD~-~Dlpvm~ 116 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK--HLYQG----ISDKLAAFEELLKKLNLDPEEVAYVGDDL-VDLPVME 116 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc--eeeec----hHhHHHHHHHHHHHhCCCHHHhhhhcCcc-ccHHHHH
Confidence 78888999999999999999999999999986 22211 35667899999999999999999999999 9998765
Q ss_pred h
Q 026634 232 N 232 (235)
Q Consensus 232 ~ 232 (235)
+
T Consensus 117 ~ 117 (170)
T COG1778 117 K 117 (170)
T ss_pred H
Confidence 4
No 95
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.39 E-value=5e-12 Score=101.16 Aligned_cols=40 Identities=30% Similarity=0.313 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||.+.+|+.+++.++.++++|+||||+..+||.+|++.
T Consensus 188 ~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~ 227 (269)
T COG0647 188 IGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAA 227 (269)
T ss_pred cCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHc
Confidence 5899999999999999999999999999999999999874
No 96
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.38 E-value=1.9e-11 Score=95.52 Aligned_cols=89 Identities=12% Similarity=-0.019 Sum_probs=61.4
Q ss_pred cccccCHHHHHH-HHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEecC----C-C--CCC--CChHHHHHHHHHcC
Q 026634 142 LQIMPGTAQLCG-FLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSRE----F-R--PYK--PDPGPLLHICSTWE 210 (235)
Q Consensus 142 ~~~~~~~~~~l~-~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~----~-~--~~K--P~~~~~~~~~~~l~ 210 (235)
..++||+.+.|+ .++++|.+++|+||++...++.+++..++. .+.+++.+ . + .+. -..+-...+-+.++
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~ 172 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIG 172 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhC
Confidence 468999999996 788899999999999999999999885542 12223221 1 1 111 11222333444456
Q ss_pred CCCCcEEEEcCCchhhHHHHh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.+.+.+.+.|||. +|+.+-.
T Consensus 173 ~~~~~~~aYsDS~-~D~pmL~ 192 (210)
T TIGR01545 173 SPLKLYSGYSDSK-QDNPLLA 192 (210)
T ss_pred CChhheEEecCCc-ccHHHHH
Confidence 6777889999999 9999854
No 97
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.37 E-value=6.4e-12 Score=98.74 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCcccccCHHHHHHHH--HhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC-----CC------------CCCC-
Q 026634 140 DRLQIMPGTAQLCGFL--DSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-----FR------------PYKP- 197 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l--~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-----~~------------~~KP- 197 (235)
...++.||+.++++.+ ++.|+.++|+|+++..+++.+++..|+. |+.|++-. .+ ...|
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 4568999999999999 5679999999999999999999999998 77776621 10 1112
Q ss_pred ---ChHHHHHHHHH---cCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 198 ---DPGPLLHICST---WEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 198 ---~~~~~~~~~~~---l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|...+...++. -|+..++++||||+. ||+-++.++
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~-nD~Cp~~~L 188 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGR-NDFCPALRL 188 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCC-CCcCccccc
Confidence 23455555555 377889999999999 999888763
No 98
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.37 E-value=2e-12 Score=103.44 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=68.7
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHH--HHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD--LFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~--~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
..++||+.++|+.|+++|++++++||+.+.... ..++.+|+. |+.+++++.... ..+..++++++++|++|
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~----~~l~~~~~~~~~~~~~~ 98 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV----QMILESKKRFDIRNGII 98 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH----HHHHhhhhhccCCCceE
Confidence 368999999999999999999999999887665 678999986 677777653321 46777778889999999
Q ss_pred EEEcCCchhhHHHH
Q 026634 217 MMVGDSLKDDIDVV 230 (235)
Q Consensus 217 v~iGDs~~~Di~~A 230 (235)
++|||+. .|++..
T Consensus 99 ~~vGd~~-~d~~~~ 111 (242)
T TIGR01459 99 YLLGHLE-NDIINL 111 (242)
T ss_pred EEeCCcc-cchhhh
Confidence 9999998 787643
No 99
>PTZ00445 p36-lilke protein; Provisional
Probab=99.36 E-value=2.4e-12 Score=97.94 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=72.2
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChh---------------HHHHHHhhcCce--EEEEEec------C------CC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE---------------AVDLFHNRFGIT--FSPALSR------E------FR 193 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~---------------~~~~~~~~lgl~--f~~i~~~------~------~~ 193 (235)
.+.|+...++..|++.|++++|||-++.. .++..++.-+-. .+.+++. + .+
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 47788999999999999999999977653 356666655544 3344442 1 14
Q ss_pred CCCCChHH--H--HHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGP--L--LHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~--~--~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
..||+|.. | +++++++|+.|++|+||+|+. .++++|+++
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~-~NVeaA~~l 197 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDM-NNCKNALKE 197 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHHHeEeecCCH-HHHHHHHHC
Confidence 68999999 9 999999999999999999999 999999864
No 100
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.34 E-value=1.9e-11 Score=98.07 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=65.9
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhH---HHHHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCCC
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPN 214 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~ 214 (235)
...++||+.++++.|+++|++++++||..... ....++.+|++ ++.++..+.. ++++...+.+.+.+++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~--~~K~~rr~~I~~~y~I--- 190 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK--SSKESRRQKVQKDYEI--- 190 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC--CCcHHHHHHHHhcCCE---
Confidence 45789999999999999999999999987443 44677888987 4566665433 5666777888777776
Q ss_pred cEEEEcCCchhhHHHH
Q 026634 215 EVMMVGDSLKDDIDVV 230 (235)
Q Consensus 215 ~~v~iGDs~~~Di~~A 230 (235)
+++|||+. +|+..+
T Consensus 191 -vl~vGD~~-~Df~~~ 204 (266)
T TIGR01533 191 -VLLFGDNL-LDFDDF 204 (266)
T ss_pred -EEEECCCH-HHhhhh
Confidence 89999999 999764
No 101
>PRK10444 UMP phosphatase; Provisional
Probab=99.34 E-value=5.9e-12 Score=100.75 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=37.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||+|.++..+++.+++++++|+||||+..+|+.+|+++
T Consensus 172 ~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~ 211 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQA 211 (248)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHc
Confidence 5899999999999999999999999999975899999864
No 102
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.27 E-value=2.2e-11 Score=97.54 Aligned_cols=56 Identities=11% Similarity=-0.048 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-CCCCCChH
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-RPYKPDPG 200 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-~~~KP~~~ 200 (235)
.||+.++|+.|+++|++++|+|++.+..+...++.+|+. |+.+++++. ...||+++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCcc
Confidence 499999999999999999999999999999999999999 888887654 35666653
No 103
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.26 E-value=2.2e-11 Score=98.98 Aligned_cols=88 Identities=9% Similarity=0.052 Sum_probs=57.5
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCCh-----hHHHHHHhhcCceEE--EEEecCCC-CCCCChHHHHHHHHHcCCCCCcE
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIK-----EAVDLFHNRFGITFS--PALSREFR-PYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~-----~~~~~~~~~lgl~f~--~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
++++.+++..++..+..+.++++... ...+.+.+.+++... ..-.-+.. .+..|+.+++++++.+|+++++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 34556666666666666666666442 223344455554311 00001222 34557889999999999999999
Q ss_pred EEEcCCchhhHHHHhhh
Q 026634 217 MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~ 233 (235)
++|||+. ||++|++.+
T Consensus 219 i~~GD~~-NDi~m~~~a 234 (272)
T PRK10530 219 VAFGDNF-NDISMLEAA 234 (272)
T ss_pred EEeCCCh-hhHHHHHhc
Confidence 9999999 999999864
No 104
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.19 E-value=1.5e-11 Score=91.90 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=60.5
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeC-CChhHHHHHHhhcCce-E--E-----EEEecCCCCCCCChHHHHHHHHHcC
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITR-NIKEAVDLFHNRFGIT-F--S-----PALSREFRPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn-~~~~~~~~~~~~lgl~-f--~-----~i~~~~~~~~KP~~~~~~~~~~~l~ 210 (235)
..+.++|++.+.|+.|+++|++++++|- ...+.+..+++.+++. - . .++.......-.|..-|+++.++.|
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tg 121 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTG 121 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH-
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcC
Confidence 3568999999999999999999999995 4567889999998876 0 0 1111111133477788999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHhh
Q 026634 211 VQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 211 ~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
++.++++||+|.. .++....+
T Consensus 122 I~y~eMlFFDDe~-~N~~~v~~ 142 (169)
T PF12689_consen 122 IPYEEMLFFDDES-RNIEVVSK 142 (169)
T ss_dssp --GGGEEEEES-H-HHHHHHHT
T ss_pred CChhHEEEecCch-hcceeeEe
Confidence 9999999999999 88877654
No 105
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.19 E-value=1.6e-10 Score=92.85 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=64.1
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCC--------------------------
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYK-------------------------- 196 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~K-------------------------- 196 (235)
.|++.++|+.|+++|++++|+||+.+..+...++.+|+. |+.+++++...+|
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~ 229 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTD 229 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCCc
Confidence 399999999999999999999999999999999999998 8888876543222
Q ss_pred ----C-ChHHHHHHHHHcCCCC-CcEEEEcCCchhh
Q 026634 197 ----P-DPGPLLHICSTWEVQP-NEVMMVGDSLKDD 226 (235)
Q Consensus 197 ----P-~~~~~~~~~~~l~~~~-~~~v~iGDs~~~D 226 (235)
| .|....+.+++.|+.. ..+-.|+|-..||
T Consensus 230 ~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~Nn 265 (303)
T PHA03398 230 VKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNN 265 (303)
T ss_pred ccCCCCCCeehHHHHHHcCcceeccEEEeccCcccC
Confidence 2 3667888888888854 4455566665444
No 106
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.18 E-value=5.6e-11 Score=89.07 Aligned_cols=86 Identities=13% Similarity=0.019 Sum_probs=73.4
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFR-PYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
.+...||+.++|+.|.+. +.++|.|++.+.+++.+++.++.. |+.++..+.. ..+|+ +.+.++.+|.++++|
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~v 115 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKV 115 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhE
Confidence 356889999999999988 999999999999999999999865 7777776654 34444 678888999999999
Q ss_pred EEEcCCchhhHHHHh
Q 026634 217 MMVGDSLKDDIDVVF 231 (235)
Q Consensus 217 v~iGDs~~~Di~~A~ 231 (235)
++|||++ .|+.++.
T Consensus 116 IiVDD~~-~~~~~~~ 129 (162)
T TIGR02251 116 IIIDNSP-YSYSLQP 129 (162)
T ss_pred EEEeCCh-hhhccCc
Confidence 9999999 9987764
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.17 E-value=9e-11 Score=93.01 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=51.6
Q ss_pred EEEEeCCChhHHHHHHhhcCceEEEEEec---CCC-CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 162 RGLITRNIKEAVDLFHNRFGITFSPALSR---EFR-PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 162 i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~---~~~-~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+.+.++.....+...++.++..+..+.+. +.. .+..|+.+++.+++++|++++++++|||+. ||++|++.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~a 192 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSE-NDLEMFEVA 192 (230)
T ss_pred eeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCch-hhHHHHHhc
Confidence 34445555555666677666543332222 222 567789999999999999999999999999 999998753
No 108
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.09 E-value=6.3e-10 Score=87.37 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=49.1
Q ss_pred EEEeCCChhHHHHHHhhcCceEEEEEe---cCCC-CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 163 GLITRNIKEAVDLFHNRFGITFSPALS---REFR-PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 163 ~i~Sn~~~~~~~~~~~~lgl~f~~i~~---~~~~-~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+++++.....+...++..++.+ ..+ .+.. .+..|..+++++++++|++++++++|||+. ||++|.+.+
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~-ND~~ml~~a 182 (215)
T TIGR01487 111 IMREGKDVDEVREIIKERGLNL--VDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSE-NDIDLFRVV 182 (215)
T ss_pred EecCCccHHHHHHHHHhCCeEE--EecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHhC
Confidence 3445555566666667666542 111 1222 466777899999999999999999999999 999998854
No 109
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=4.5e-09 Score=77.78 Aligned_cols=88 Identities=10% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcC----ce-EEEE--------------Ee-cCCCCCCCCh
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG----IT-FSPA--------------LS-REFRPYKPDP 199 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lg----l~-f~~i--------------~~-~~~~~~KP~~ 199 (235)
....+.||.+++++.+++++++++|+|++...++..+++.++ +. .+.+ +. .+...+-.++
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS 149 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcc
Confidence 446799999999999999999999999999999999998876 32 1111 11 1112233333
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 200 GPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 200 ~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
. +.+++.-.++.++|+||+. .|+.+|+.
T Consensus 150 ~----vI~~l~e~~e~~fy~GDsv-sDlsaakl 177 (220)
T COG4359 150 S----VIHELSEPNESIFYCGDSV-SDLSAAKL 177 (220)
T ss_pred h----hHHHhhcCCceEEEecCCc-ccccHhhh
Confidence 3 4455666788899999999 99999974
No 110
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.00 E-value=2.1e-09 Score=87.00 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.+..|..+++.+++++|+++++|++|||+. ||++|-+
T Consensus 186 ~g~~K~~al~~l~~~lgi~~~~v~afGD~~-ND~~Ml~ 222 (264)
T COG0561 186 KGVSKGYALQRLAKLLGIKLEEVIAFGDST-NDIEMLE 222 (264)
T ss_pred CCCchHHHHHHHHHHhCCCHHHeEEeCCcc-ccHHHHH
Confidence 345567789999999999999999999999 9999865
No 111
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.99 E-value=2.3e-09 Score=87.03 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=32.9
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+-.|..+++.+++.+|++++++++|||+. ||++|-+.+
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~a 231 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQE-NDIAMIEYA 231 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCch-hhHHHHHhC
Confidence 44556789999999999999999999999 999997653
No 112
>PLN02645 phosphoglycolate phosphatase
Probab=98.99 E-value=3.7e-09 Score=87.58 Aligned_cols=80 Identities=10% Similarity=0.067 Sum_probs=56.2
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHH---HHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD---LFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~---~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
.++||+.++++.|+++|++++++||+...... ..++.+|+. ++.++++. ......++..+....+.+
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~--------~~~~~~l~~~~~~~~~~V 115 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSS--------FAAAAYLKSINFPKDKKV 115 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehH--------HHHHHHHHhhccCCCCEE
Confidence 57899999999999999999999998844433 344778877 56665542 244455555565444557
Q ss_pred EEcCCchhhHHHHh
Q 026634 218 MVGDSLKDDIDVVF 231 (235)
Q Consensus 218 ~iGDs~~~Di~~A~ 231 (235)
+++++. .+.+.++
T Consensus 116 ~viG~~-~~~~~l~ 128 (311)
T PLN02645 116 YVIGEE-GILEELE 128 (311)
T ss_pred EEEcCH-HHHHHHH
Confidence 777776 6766665
No 113
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.98 E-value=1.4e-10 Score=91.56 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=52.0
Q ss_pred EEEEeCCChhHHHHHHhhcCceEEEEE---ecCCC-CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 162 RGLITRNIKEAVDLFHNRFGITFSPAL---SREFR-PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 162 i~i~Sn~~~~~~~~~~~~lgl~f~~i~---~~~~~-~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
..+.+....+.+...++.++..+.... ..+.. .+.+|..++.++++++|++++++++|||+. ||+.|.+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~a 184 (225)
T TIGR01482 110 VKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSE-NDIDLFEVP 184 (225)
T ss_pred EEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCH-hhHHHHHhc
Confidence 445555556666777777776532211 11222 567888999999999999999999999999 999999753
No 114
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.97 E-value=2.6e-08 Score=73.70 Aligned_cols=91 Identities=14% Similarity=0.251 Sum_probs=73.1
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcC---ce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCc
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG---IT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lg---l~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
..+++|++.+.+++.++.|++++|.|++.......+...-. +. |+..+.... ..|....-|.++++..|++|.+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtti-G~KrE~~SY~kIa~~iGl~p~e 179 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTI-GKKRESQSYAKIAGDIGLPPAE 179 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeeccc-cccccchhHHHHHHhcCCCchh
Confidence 45799999999999999999999999999887776654322 11 555444322 3566678899999999999999
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
++|+.|.+ ..+.+|+.+
T Consensus 180 ilFLSDn~-~EL~AA~~v 196 (229)
T COG4229 180 ILFLSDNP-EELKAAAGV 196 (229)
T ss_pred eEEecCCH-HHHHHHHhc
Confidence 99999999 999999853
No 115
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.97 E-value=4.8e-09 Score=79.92 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCcccccCHHHHHHHHHhCCC-eEEEEeCCChhHHHHHHhhcCce--EEEEEecC-----CC-------------CCCCC
Q 026634 140 DRLQIMPGTAQLCGFLDSKKI-RRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-----FR-------------PYKPD 198 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~-~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~-----~~-------------~~KP~ 198 (235)
...+..||+.++++.+++.|. .+.|+|.++..+++.+++++|+. |..|++-. .+ ...|.
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPs 160 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPS 160 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCch
Confidence 345889999999999999985 99999999999999999999998 66665511 00 11121
Q ss_pred ----hHHHHHHHH---HcCCCCCcEEEEcCCchhhHHHHh
Q 026634 199 ----PGPLLHICS---TWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 199 ----~~~~~~~~~---~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
...+..... +-|+.-++.+||||+. ||+....
T Consensus 161 NmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~-nD~CP~l 199 (256)
T KOG3120|consen 161 NMCKGLVLDELVASQLKDGVRYERLIYVGDGA-NDFCPVL 199 (256)
T ss_pred hhhhhHHHHHHHHHHhhcCCceeeEEEEcCCC-CCcCcch
Confidence 112222222 2377888999999999 9986543
No 116
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.96 E-value=3.9e-09 Score=85.85 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+-.|..+++.+++.+|++++++++|||+. ||++|-+.
T Consensus 186 g~sKg~al~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ 222 (272)
T PRK15126 186 GCNKGAALAVLSQHLGLSLADCMAFGDAM-NDREMLGS 222 (272)
T ss_pred CCChHHHHHHHHHHhCCCHHHeEEecCCH-HHHHHHHH
Confidence 34567789999999999999999999999 99999764
No 117
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.94 E-value=3.3e-09 Score=84.51 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=36.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcE-EEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEV-MMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~-v~iGDs~~~Di~~A~~~ 233 (235)
.+||++.+|+.++++++++++++ +||||+..+||.+|+++
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~ 226 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNA 226 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHC
Confidence 57999999999999999999887 99999986799999864
No 118
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.94 E-value=4.9e-10 Score=89.62 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=70.5
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEE--EecCC-CCCCCChHHHHHHHHHcCCC-CCcEEE
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPA--LSREF-RPYKPDPGPLLHICSTWEVQ-PNEVMM 218 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i--~~~~~-~~~KP~~~~~~~~~~~l~~~-~~~~v~ 218 (235)
++++.++++.++++|+++ ++||.+..........+|.. +..+ .+++. ..+||+|.+|+.+++++|.. +++|+|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 578889999998899997 88999888776666666665 3332 34444 37999999999999999975 679999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+..+|+.+|+++
T Consensus 219 vGD~~~~Di~~a~~~ 233 (242)
T TIGR01459 219 VGDSFYTDILGANRL 233 (242)
T ss_pred ECCCcHHHHHHHHHC
Confidence 999944999999874
No 119
>PRK10976 putative hydrolase; Provisional
Probab=98.94 E-value=5.9e-09 Score=84.51 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 196 KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
-.|..+++.+++++|++++++++|||+. ||++|-+.
T Consensus 189 vsKg~al~~l~~~lgi~~~~viafGD~~-NDi~Ml~~ 224 (266)
T PRK10976 189 VSKGHALEAVAKKLGYSLKDCIAFGDGM-NDAEMLSM 224 (266)
T ss_pred CChHHHHHHHHHHcCCCHHHeEEEcCCc-ccHHHHHH
Confidence 3456789999999999999999999999 99999764
No 120
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.93 E-value=5.4e-09 Score=85.09 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=49.3
Q ss_pred HHHhCCCeEEEE---eCCChhHHHHHHhhcCceEEEEEe---cCCC-CCCCChHHHHHHHHHcCCCC-CcEEEEcCCchh
Q 026634 154 FLDSKKIRRGLI---TRNIKEAVDLFHNRFGITFSPALS---REFR-PYKPDPGPLLHICSTWEVQP-NEVMMVGDSLKD 225 (235)
Q Consensus 154 ~l~~~g~~i~i~---Sn~~~~~~~~~~~~lgl~f~~i~~---~~~~-~~KP~~~~~~~~~~~l~~~~-~~~v~iGDs~~~ 225 (235)
.++..++...++ ++.....+...++..++.+ +.+ .+.. .+ .|..+++++++.+|+++ ++|++|||+. |
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~-N 218 (273)
T PRK00192 143 LAKDREFSEPFLWNGSEAAKERFEEALKRLGLKV--TRGGRFLHLLGGG-DKGKAVRWLKELYRRQDGVETIALGDSP-N 218 (273)
T ss_pred HHHhcccCCceeecCchHHHHHHHHHHHHcCCEE--EECCeEEEEeCCC-CHHHHHHHHHHHHhccCCceEEEEcCCh-h
Confidence 344555654554 3333333444455555541 111 1222 34 67789999999999999 9999999999 9
Q ss_pred hHHHHhhh
Q 026634 226 DIDVVFNT 233 (235)
Q Consensus 226 Di~~A~~~ 233 (235)
|++|++.+
T Consensus 219 Di~m~~~a 226 (273)
T PRK00192 219 DLPMLEAA 226 (273)
T ss_pred hHHHHHhC
Confidence 99998753
No 121
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.85 E-value=1.5e-08 Score=69.74 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=47.1
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhH---HHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
.+.||+.++++.|+++|.+++++||+.... ....++.+|+. .+.++++- ......+++. ....+++
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~--------~~~~~~l~~~-~~~~~v~ 84 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG--------MAAAEYLKEH-KGGKKVY 84 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH--------HHHHHHHHHH-TTSSEEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH--------HHHHHHHHhc-CCCCEEE
Confidence 799999999999999999999999986433 44455888987 34454421 2333333432 3466788
Q ss_pred EEcCCc
Q 026634 218 MVGDSL 223 (235)
Q Consensus 218 ~iGDs~ 223 (235)
++|-..
T Consensus 85 vlG~~~ 90 (101)
T PF13344_consen 85 VLGSDG 90 (101)
T ss_dssp EES-HH
T ss_pred EEcCHH
Confidence 887654
No 122
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.83 E-value=1.8e-08 Score=83.58 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=73.9
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc-C-------ce--EEEEEecCC------------------
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-G-------IT--FSPALSREF------------------ 192 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l-g-------l~--f~~i~~~~~------------------ 192 (235)
.+...||+.++|+.|+++|++++|+||++...++.+++.+ | +. |+.++++..
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~ 261 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVET 261 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCC
Confidence 4557899999999999999999999999999999999996 6 44 888877532
Q ss_pred CCCCCCh------------HHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 193 RPYKPDP------------GPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 193 ~~~KP~~------------~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
+..++.. .-+..+.+.+|+.+++|+||||+..+||.+|+
T Consensus 262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~k 312 (343)
T TIGR02244 262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSK 312 (343)
T ss_pred CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhH
Confidence 1011111 23667788899999999999999999999998
No 123
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.83 E-value=1.8e-08 Score=80.38 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 201 PLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+++++++.+|++++++++|||+. ||++|-+.
T Consensus 190 ai~~l~~~~~i~~~~~~~~GD~~-ND~~Ml~~ 220 (254)
T PF08282_consen 190 AIKYLLEYLGISPEDIIAFGDSE-NDIEMLEL 220 (254)
T ss_dssp HHHHHHHHHTTSGGGEEEEESSG-GGHHHHHH
T ss_pred HHHHHhhhcccccceeEEeeccc-ccHhHHhh
Confidence 89999999999999999999999 99999764
No 124
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.80 E-value=1.4e-08 Score=81.55 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=53.8
Q ss_pred hCCCeEEEEeCCCh-----hHHHHHHhhcCceEEEEEec----CCC-CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhh
Q 026634 157 SKKIRRGLITRNIK-----EAVDLFHNRFGITFSPALSR----EFR-PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDD 226 (235)
Q Consensus 157 ~~g~~i~i~Sn~~~-----~~~~~~~~~lgl~f~~i~~~----~~~-~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~D 226 (235)
+.-+++.++..... ......+...|+.+..++++ +.. .+.+|..+++.+++.+|+++++|++|||+. ||
T Consensus 117 ~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~-ND 195 (249)
T TIGR01485 117 QRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSG-ND 195 (249)
T ss_pred cCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECCh-hH
Confidence 34466666654321 12233444556556555554 333 688999999999999999999999999999 99
Q ss_pred HHHHhh
Q 026634 227 IDVVFN 232 (235)
Q Consensus 227 i~~A~~ 232 (235)
++|.+.
T Consensus 196 ~~ml~~ 201 (249)
T TIGR01485 196 IELFEI 201 (249)
T ss_pred HHHHHc
Confidence 999875
No 125
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.78 E-value=3.9e-08 Score=74.38 Aligned_cols=40 Identities=30% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||.+.+|+.+++.+|++|+++|||||....|+-+|.++
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~ 218 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQAC 218 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhh
Confidence 6899999999999999999999999999997788888753
No 126
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.77 E-value=6.7e-08 Score=76.15 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+-.|+.+++.+++++|+++++|++|||+. ||++|.+.
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~~-NDi~ml~~ 213 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDGP-NDLPLLEV 213 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCCH-HHHHHHHh
Confidence 34466789999999999999999999999 99999874
No 127
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.77 E-value=6.2e-08 Score=72.17 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=55.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHH---HHHhh-----cCceEEEEEecCC----------CCCCC---ChHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD---LFHNR-----FGITFSPALSREF----------RPYKP---DPGP 201 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~---~~~~~-----lgl~f~~i~~~~~----------~~~KP---~~~~ 201 (235)
...|++.++++.++++|++++++|+.+...+. ..+.. .+++...+++.+. ...+| +.+.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~ 106 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIAC 106 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHH
Confidence 45799999999999999999999999877764 55655 2343224443221 12333 3444
Q ss_pred HHHHHHHcCCCCCcE-EEEcCCchhhHHHHh
Q 026634 202 LLHICSTWEVQPNEV-MMVGDSLKDDIDVVF 231 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~-v~iGDs~~~Di~~A~ 231 (235)
+..+.+.+.-.--.. +.+||.. +|+++=+
T Consensus 107 l~~i~~~~~~~~~~f~~~~gn~~-~D~~~y~ 136 (157)
T smart00775 107 LRDIKSLFPPQGNPFYAGFGNRI-TDVISYS 136 (157)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCc-hhHHHHH
Confidence 555555443222233 4588888 9998643
No 128
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.76 E-value=1.6e-08 Score=70.65 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=61.4
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChH---HHHHHHHHc------
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPG---PLLHICSTW------ 209 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~---~~~~~~~~l------ 209 (235)
.+.++|.++++++.++..|+-+..+|=+....+-..+..+++. |+.++. +|.|. ++-+++..+
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vi------ePhP~K~~ML~~llr~i~~er~~ 112 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVI------EPHPYKFLMLSQLLREINTERNQ 112 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEe------cCCChhHHHHHHHHHHHHHhhcc
Confidence 4689999999999999999999999988888888889999998 887643 44444 333344333
Q ss_pred CCCCCcEEEEcCCc
Q 026634 210 EVQPNEVMMVGDSL 223 (235)
Q Consensus 210 ~~~~~~~v~iGDs~ 223 (235)
.+.|++++|++|..
T Consensus 113 ~ikP~~Ivy~DDR~ 126 (164)
T COG4996 113 KIKPSEIVYLDDRR 126 (164)
T ss_pred ccCcceEEEEeccc
Confidence 47899999999976
No 129
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.71 E-value=4.2e-07 Score=75.69 Aligned_cols=40 Identities=23% Similarity=0.071 Sum_probs=34.7
Q ss_pred CCCCChHHHHHHHHHc--------CC-----CCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTW--------EV-----QPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l--------~~-----~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||++.+|+.+++.+ ++ ++++++||||+..+||.+|+++
T Consensus 231 ~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~ 283 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNY 283 (321)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhC
Confidence 5999999999998887 43 4579999999999999999863
No 130
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.70 E-value=7.7e-08 Score=71.50 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=60.5
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---E-EEEEecCCCCCCCChHHHHHHH-HHcCCCCCc
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---F-SPALSREFRPYKPDPGPLLHIC-STWEVQPNE 215 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f-~~i~~~~~~~~KP~~~~~~~~~-~~l~~~~~~ 215 (235)
...++||+.++|+.|++. ++++|+|++.+.++..+++.++.. | +.+++.+...+ + +.+-+ .-+|.+.+.
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~-~----~~KdL~~i~~~d~~~ 129 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS-P----HTKSLLRLFPADESM 129 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCC-C----ccccHHHHcCCCccc
Confidence 457899999999999966 999999999999999999999877 6 56676554321 1 11223 345788999
Q ss_pred EEEEcCCc
Q 026634 216 VMMVGDSL 223 (235)
Q Consensus 216 ~v~iGDs~ 223 (235)
+++|+|++
T Consensus 130 vvivDd~~ 137 (156)
T TIGR02250 130 VVIIDDRE 137 (156)
T ss_pred EEEEeCCH
Confidence 99999998
No 131
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.70 E-value=2.1e-07 Score=72.40 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=36.0
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+.+|+.+++.++++++++++++++|||+. ||+.|++.+
T Consensus 160 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~-nD~~~~~~~ 198 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGKRDEILAFGDSG-NDEEMFEVA 198 (204)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEcCCH-HHHHHHHHc
Confidence 578899999999999999999999999999 999998753
No 132
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.68 E-value=1.1e-07 Score=76.56 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=32.8
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+-.|..+++.+++.+|++++++++|||+. ||++|.+.+
T Consensus 186 ~~~K~~~i~~~~~~~~~~~~~~~~~GD~~-nD~~m~~~~ 223 (256)
T TIGR00099 186 GVSKGSALQSLAEALGISLEDVIAFGDGM-NDIEMLEAA 223 (256)
T ss_pred CCChHHHHHHHHHHcCCCHHHEEEeCCcH-HhHHHHHhC
Confidence 44566789999999999999999999999 999998753
No 133
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.68 E-value=7.5e-07 Score=71.41 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=71.1
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHH---HHhhcCceEEEEE-------------ec-C------C----C
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL---FHNRFGITFSPAL-------------SR-E------F----R 193 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~---~~~~lgl~f~~i~-------------~~-~------~----~ 193 (235)
.....+++.++++.|.+.|+++..+|......... -++.+|++|+... .. . . .
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 34567899999999999999999999987666543 4466788743321 00 0 0 1
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNTF 234 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~~ 234 (235)
.+-++..++..++.+.|..|+++|||+|+. .++....+.+
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~-~nl~sv~~a~ 198 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNK-ENLKSVEKAC 198 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCH-HHHHHHHHHH
Confidence 466788999999999999999999999999 8888766543
No 134
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=98.68 E-value=2.2e-08 Score=65.09 Aligned_cols=40 Identities=38% Similarity=0.537 Sum_probs=36.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||+|.+|..+++.+++++++|+||||++.+||.+|+++
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~ 41 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAA 41 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHc
Confidence 4899999999999999999999999999933999999974
No 135
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.66 E-value=6e-08 Score=76.69 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChh---HHHHHHhhcCce-EEEEE-ecCCC-CC---CCChHHHHHHHHHcCCC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKE---AVDLFHNRFGIT-FSPAL-SREFR-PY---KPDPGPLLHICSTWEVQ 212 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~---~~~~~~~~lgl~-f~~i~-~~~~~-~~---KP~~~~~~~~~~~l~~~ 212 (235)
..+.||+.++++.++++|++|+++||.+.. ....-|...|+. .+.++ ..+.. .. ......-.+.+++-|..
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~ 193 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYR 193 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCc
Confidence 388999999999999999999999987655 344556778876 44433 22211 11 11113333334333433
Q ss_pred CCcEEEEcCCchhhHHH
Q 026634 213 PNEVMMVGDSLKDDIDV 229 (235)
Q Consensus 213 ~~~~v~iGDs~~~Di~~ 229 (235)
. +++|||+. +|+.+
T Consensus 194 I--i~~iGD~~-~D~~~ 207 (229)
T PF03767_consen 194 I--IANIGDQL-SDFSG 207 (229)
T ss_dssp E--EEEEESSG-GGCHC
T ss_pred E--EEEeCCCH-HHhhc
Confidence 2 78999999 99988
No 136
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.66 E-value=4.9e-08 Score=77.76 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCeEEEEeCCCh----hHHHHHHhhcCceEEEEEec----CCC-CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHH
Q 026634 159 KIRRGLITRNIK----EAVDLFHNRFGITFSPALSR----EFR-PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDV 229 (235)
Q Consensus 159 g~~i~i~Sn~~~----~~~~~~~~~lgl~f~~i~~~----~~~-~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~ 229 (235)
.+++.+...... ..+...++..+..+..+.++ +.. .+.+|+.+++.+++++|+++++|++|||+. ||++|
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~-nD~~m 190 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQAAKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSG-NDEEM 190 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCCEEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCc-cHHHH
Confidence 356666554321 12333445555445555554 333 678999999999999999999999999999 99999
Q ss_pred Hhhh
Q 026634 230 VFNT 233 (235)
Q Consensus 230 A~~~ 233 (235)
.+.+
T Consensus 191 l~~~ 194 (236)
T TIGR02471 191 LRGL 194 (236)
T ss_pred HcCC
Confidence 8743
No 137
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.62 E-value=2.8e-07 Score=72.25 Aligned_cols=86 Identities=14% Similarity=-0.019 Sum_probs=58.1
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhH---HHHHHhhcCce-EEEEEecC-CCCCCCC----hHHHHHHHHHcCC
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT-FSPALSRE-FRPYKPD----PGPLLHICSTWEV 211 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~lgl~-f~~i~~~~-~~~~KP~----~~~~~~~~~~l~~ 211 (235)
..++.|++.++++.|+++|++++++|+..... ....+...|++ ++.++--. ....|+. .+...++ .+-|.
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l-~~~GY 196 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSL-MEEGY 196 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHH-HhCCc
Confidence 45799999999999999999999999988665 55667788887 66655432 2233321 1122222 22222
Q ss_pred CCCcEEEEcCCchhhHHHH
Q 026634 212 QPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 212 ~~~~~v~iGDs~~~Di~~A 230 (235)
.=+..|||+. +|+.++
T Consensus 197 --rIv~~iGDq~-sDl~G~ 212 (229)
T TIGR01675 197 --RIWGNIGDQW-SDLLGS 212 (229)
T ss_pred --eEEEEECCCh-HHhcCC
Confidence 2256789999 999764
No 138
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.62 E-value=3.9e-07 Score=72.97 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+||.+.++..+.++++++|++|+||||+..+||.-|++.
T Consensus 222 ~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~ 261 (306)
T KOG2882|consen 222 LGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNC 261 (306)
T ss_pred cCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhcc
Confidence 5899999999999999999999999999999999988763
No 139
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.61 E-value=8.8e-08 Score=85.55 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=65.5
Q ss_pred cccccCHHHHHHHHHhCC-CeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 142 LQIMPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g-~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
..++||+.++++.|+++| ++++++||.+...+..+++++|++ |..+ .+++|+ +.+++++..+++|+|
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~------~p~~K~----~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAEL------LPEDKL----AIVKELQEEGGVVAM 452 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccC------CHHHHH----HHHHHHHHcCCEEEE
Confidence 357999999999999999 999999999999999999999986 3322 223333 344555556789999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+. +|+.+++++
T Consensus 453 vGDg~-nD~~al~~A 466 (556)
T TIGR01525 453 VGDGI-NDAPALAAA 466 (556)
T ss_pred EECCh-hHHHHHhhC
Confidence 99999 999999863
No 140
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.58 E-value=1.3e-07 Score=84.45 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=64.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
.++||+.++++.|+++|++++++|+.+...++.+++.+|++ +++ + ..+++|.+. +++++.++++|+||||+
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~---~~~-~-~~p~~K~~~----v~~l~~~~~~v~~VGDg 475 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN---VRA-E-VLPDDKAAL----IKELQEKGRVVAMVGDG 475 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc---EEc-c-CChHHHHHH----HHHHHHcCCEEEEEeCC
Confidence 57899999999999999999999999999999999999986 222 1 122334444 44444467899999999
Q ss_pred chhhHHHHhhh
Q 026634 223 LKDDIDVVFNT 233 (235)
Q Consensus 223 ~~~Di~~A~~~ 233 (235)
. ||+.+++++
T Consensus 476 ~-nD~~al~~A 485 (562)
T TIGR01511 476 I-NDAPALAQA 485 (562)
T ss_pred C-ccHHHHhhC
Confidence 9 999998763
No 141
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.57 E-value=5.9e-07 Score=71.67 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=56.1
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhH---HHHHHhhcCce-EEEEEecCCC-CCCCChHHHH----HHHHHcCC
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT-FSPALSREFR-PYKPDPGPLL----HICSTWEV 211 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~lgl~-f~~i~~~~~~-~~KP~~~~~~----~~~~~l~~ 211 (235)
..++.|++.++.+.++++|++++++||..... ....|.+.|+. ++.++--+.. ..+...-.++ .-+.+-|.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY 222 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGY 222 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCc
Confidence 45789999999999999999999999987543 34455677876 5655543221 2222222222 11222232
Q ss_pred CCCcEEEEcCCchhhHHHH
Q 026634 212 QPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 212 ~~~~~v~iGDs~~~Di~~A 230 (235)
. =+..|||+. +|+.+.
T Consensus 223 r--Iv~~iGDq~-sDl~G~ 238 (275)
T TIGR01680 223 N--IVGIIGDQW-NDLKGE 238 (275)
T ss_pred e--EEEEECCCH-HhccCC
Confidence 2 357789999 999865
No 142
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.55 E-value=1.7e-07 Score=83.36 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=66.4
Q ss_pred cccccCHHHHHHHHHhCCC-eEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 142 LQIMPGTAQLCGFLDSKKI-RRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~-~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
..++||+.+.++.|+++|+ +++++||.+...++.+++.+|++ |..+ .+.++ ..++++++..+++|+|
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~------~p~~K----~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAEL------LPEDK----LEIVKELREKYGPVAM 430 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhcc------CcHHH----HHHHHHHHhcCCEEEE
Confidence 3578999999999999999 99999999999999999999986 3322 12233 4455666666789999
Q ss_pred EcCCchhhHHHHhhh
Q 026634 219 VGDSLKDDIDVVFNT 233 (235)
Q Consensus 219 iGDs~~~Di~~A~~~ 233 (235)
|||+. ||+.+++++
T Consensus 431 vGDg~-nD~~al~~A 444 (536)
T TIGR01512 431 VGDGI-NDAPALAAA 444 (536)
T ss_pred EeCCH-HHHHHHHhC
Confidence 99999 999999864
No 143
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.45 E-value=3e-07 Score=68.64 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=55.9
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
.....||+.++|+.+.+. +.++|.|.+...++..+++.+.-. |+.++..+....... .+.+-++.+|-+++++|
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~--~~~KdL~~l~~~~~~vv 110 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKG--SYIKDLSKLGRDLDNVV 110 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETT--EEE--GGGSSS-GGGEE
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhcccccccccccccccccc--ccccchHHHhhccccEE
Confidence 356899999999999666 999999999999999999998863 888776543211000 11256677788899999
Q ss_pred EEcCCc
Q 026634 218 MVGDSL 223 (235)
Q Consensus 218 ~iGDs~ 223 (235)
+|+|++
T Consensus 111 ivDD~~ 116 (159)
T PF03031_consen 111 IVDDSP 116 (159)
T ss_dssp EEES-G
T ss_pred EEeCCH
Confidence 999998
No 144
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.44 E-value=1.6e-06 Score=69.58 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=29.6
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
+--|..++.++++++++++++++++|||. ||+.|-.
T Consensus 163 ~a~K~~Al~~L~~~~~~~~~~vl~aGDSg-ND~~mL~ 198 (247)
T PF05116_consen 163 GASKGAALRYLMERWGIPPEQVLVAGDSG-NDLEMLE 198 (247)
T ss_dssp T-SHHHHHHHHHHHHT--GGGEEEEESSG-GGHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEEeCCC-CcHHHHc
Confidence 44567899999999999999999999999 9999864
No 145
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.42 E-value=3.3e-06 Score=68.50 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 197 PDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 197 P~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.|..+++++++.+|+..+++++|||+. ||+.|-+.
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~-nD~~mf~~ 208 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDL-TDEAGFAV 208 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCc-cHHHHHHH
Confidence 455678888999999999999999999 99988654
No 146
>PLN02645 phosphoglycolate phosphatase
Probab=98.41 E-value=1.1e-07 Score=78.81 Aligned_cols=83 Identities=16% Similarity=0.060 Sum_probs=58.5
Q ss_pred HHHHHHhCCCeEEEEeCCChhH-HHHHHhhcCce--EEEEEecCCC----CCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 151 LCGFLDSKKIRRGLITRNIKEA-VDLFHNRFGIT--FSPALSREFR----PYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 151 ~l~~l~~~g~~i~i~Sn~~~~~-~~~~~~~lgl~--f~~i~~~~~~----~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
....++.++-...|+||.+... ....+...|.. |+.+.+.... .+||+|.+|..+++++++++++++||||+.
T Consensus 178 a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~ 257 (311)
T PLN02645 178 ATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRL 257 (311)
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCc
Confidence 3445544333588899887643 22223444554 5544443221 379999999999999999999999999996
Q ss_pred hhhHHHHhhh
Q 026634 224 KDDIDVVFNT 233 (235)
Q Consensus 224 ~~Di~~A~~~ 233 (235)
.+||.+|+++
T Consensus 258 ~~Di~~A~~a 267 (311)
T PLN02645 258 DTDILFGQNG 267 (311)
T ss_pred HHHHHHHHHc
Confidence 6999999874
No 147
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.34 E-value=2.4e-06 Score=60.88 Aligned_cols=47 Identities=4% Similarity=0.026 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChh---------------HHHHHHhhcCceEEEEEe
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE---------------AVDLFHNRFGITFSPALS 189 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~---------------~~~~~~~~lgl~f~~i~~ 189 (235)
.+.+++.+.++.+++.|+.++++|+.+.. .....+.+.+++++.++.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 47788899999999999999999987654 345666788888887665
No 148
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.33 E-value=3.5e-05 Score=67.53 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=78.0
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCC-------------chHHHHHhcCCchHHHH----HHhhccChhHHHHH-HH
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGE-------------DEYKRVKAENPTGIDIL----HHIESWSPDLQRHA-YQ 129 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~ 129 (235)
-+.++||+||||+.+...+.....-+++. +................ ..+.++..++.... .+
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~~Fll~A~~~~~~~r~lllll~~P~~~l~~~~~~~~~~~~~l~~~~f~G~~~~el~~~~r~ 101 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFPYYLLVALEAGSLLRALILLLSVPFVYFTYLFISESLAIKTFVFIAFAGLKIRDIELVSRS 101 (497)
T ss_pred ccEEEEecCCcccCCCCccHHHHHHHcccchHHHHHHHHHHhHHHHHHHhcCCchhHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46899999999998665555444433221 11111111111111111 12233344333222 12
Q ss_pred HHHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh-cCceEEEEEecC-----CC--CCC---C-
Q 026634 130 TIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGITFSPALSRE-----FR--PYK---P- 197 (235)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~-lgl~f~~i~~~~-----~~--~~K---P- 197 (235)
...++.++ .+.+.+.+. ++++|. .+|+|.+++.+++.+++. +|++ .+++.+ .+ .++ +
T Consensus 102 ~l~~f~~~-----~l~~~a~~~---~~~~g~-~vvVSASp~~~Vepfa~~~LGid--~VIgTeLev~~~G~~TG~i~g~~ 170 (497)
T PLN02177 102 VLPKFYAE-----DVHPETWRV---FNSFGK-RYIITASPRIMVEPFVKTFLGAD--KVLGTELEVSKSGRATGFMKKPG 170 (497)
T ss_pred HHHHHHHH-----hcCHHHHHH---HHhCCC-EEEEECCcHHHHHHHHHHcCCCC--EEEecccEECcCCEEeeeecCCC
Confidence 22233222 255555544 456775 499999999999999976 7865 333221 00 111 1
Q ss_pred ---ChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 198 ---DPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 198 ---~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
..+-...+.+.+|.+... +++|||. +|..+-.
T Consensus 171 ~c~Ge~Kv~rl~~~~g~~~~~-~aYgDS~-sD~plL~ 205 (497)
T PLN02177 171 VLVGDHKRDAVLKEFGDALPD-LGLGDRE-TDHDFMS 205 (497)
T ss_pred CCccHHHHHHHHHHhCCCCce-EEEECCc-cHHHHHH
Confidence 112233333556654444 8999999 9998754
No 149
>PTZ00174 phosphomannomutase; Provisional
Probab=98.30 E-value=2.2e-06 Score=68.74 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=28.1
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHh
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN 178 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~ 178 (235)
+.|...++++.++++|++++++|+.+...+...++
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 44556788999999999999999988777766554
No 150
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.26 E-value=2.7e-06 Score=69.20 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=30.6
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
.+...+.+++|+++|++++++|+.+...+...++.+|+
T Consensus 26 ~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 26 WQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 34456778888899999999998888888888887776
No 151
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.26 E-value=2.9e-06 Score=79.33 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=66.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
.++||+.+.++.|++.|++++++|+.+...++.+++.+|++ .++.. .. |+.-.+++++++..+++|+||||+
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~--~~~~~----~~--p~~K~~~i~~l~~~~~~v~~vGDg 721 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID--EVIAG----VL--PDGKAEAIKRLQSQGRQVAMVGDG 721 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--EEEeC----CC--HHHHHHHHHHHhhcCCEEEEEeCC
Confidence 56899999999999999999999999999999999999986 22221 11 223355777778889999999999
Q ss_pred chhhHHHHhhh
Q 026634 223 LKDDIDVVFNT 233 (235)
Q Consensus 223 ~~~Di~~A~~~ 233 (235)
. ||+.+++++
T Consensus 722 ~-nD~~al~~A 731 (834)
T PRK10671 722 I-NDAPALAQA 731 (834)
T ss_pred H-HHHHHHHhC
Confidence 9 999998763
No 152
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.24 E-value=1.5e-05 Score=63.89 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 197 PDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 197 P~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.|..++++++++++..+.++++|||+. +|+.|++.+
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~-~D~~~~~~~ 202 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDI-TDEDAFRVV 202 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCC-cHHHHHHHH
Confidence 346899999999999999999999999 999999865
No 153
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=3.9e-06 Score=71.28 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=70.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCC-----CCCCCChHHHHHHHHHcCCCCCcEE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF-----RPYKPDPGPLLHICSTWEVQPNEVM 217 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~-----~~~KP~~~~~~~~~~~l~~~~~~~v 217 (235)
.++....+.+..|+++|+-++|+|-++...+..+..+.. +.++..++ ..-.|+.+-++++++++|+-.+..+
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp---~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmv 331 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP---DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMV 331 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC---CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceE
Confidence 345556688999999999999999988888888776654 44444332 2567999999999999999999999
Q ss_pred EEcCCchhhHHHHhhhh
Q 026634 218 MVGDSLKDDIDVVFNTF 234 (235)
Q Consensus 218 ~iGDs~~~Di~~A~~~~ 234 (235)
|++|++ -..+-.++-+
T Consensus 332 FiDD~p-~ErE~vk~~~ 347 (574)
T COG3882 332 FIDDNP-AERELVKREL 347 (574)
T ss_pred EecCCH-HHHHHHHhcC
Confidence 999999 8877776654
No 154
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=56.58 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=71.2
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEc
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iG 220 (235)
..++++.+.+.++.|++. +.++|.|+.....+...++..|++.+.++.+. ++..-.++++.++-+.+.|+|||
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a------~~e~K~~ii~eLkk~~~k~vmVG 100 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGA------DPEMKAKIIRELKKRYEKVVMVG 100 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeeccc------CHHHHHHHHHHhcCCCcEEEEec
Confidence 347999999999999999 99999999998999999999999877665433 33455778888888889999999
Q ss_pred CCchhhHHHHhh
Q 026634 221 DSLKDDIDVVFN 232 (235)
Q Consensus 221 Ds~~~Di~~A~~ 232 (235)
|+. ||+.+-++
T Consensus 101 nGa-ND~laLr~ 111 (152)
T COG4087 101 NGA-NDILALRE 111 (152)
T ss_pred CCc-chHHHhhh
Confidence 999 99987665
No 155
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.20 E-value=2e-05 Score=61.36 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhH----HHHHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCC
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA----VDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQP 213 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~----~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~ 213 (235)
...+.||+.++++..-++|.+|..+||...+. ...-++..|++ -+.++-.. ..|++..-++.+.+ .-
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk--~~k~Ke~R~~~v~k----~~ 193 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKK--DKKSKEVRRQAVEK----DY 193 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEee--CCCcHHHHHHHHhh----cc
Confidence 45799999999999999999999999987665 23455677776 22232222 24455454555544 45
Q ss_pred CcEEEEcCCchhhHHH
Q 026634 214 NEVMMVGDSLKDDIDV 229 (235)
Q Consensus 214 ~~~v~iGDs~~~Di~~ 229 (235)
.-|+.|||+. .|...
T Consensus 194 ~iVm~vGDNl-~DF~d 208 (274)
T COG2503 194 KIVMLVGDNL-DDFGD 208 (274)
T ss_pred ceeeEecCch-hhhcc
Confidence 5689999999 88743
No 156
>PLN02382 probable sucrose-phosphatase
Probab=98.19 E-value=3.2e-05 Score=66.57 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHc---CCCCCcEEEEcCCchhhHHHHhh
Q 026634 195 YKPDPGPLLHICSTW---EVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l---~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+-.|..+++++++++ |++++++++|||+. ||++|-+.
T Consensus 173 g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~-NDleMl~~ 212 (413)
T PLN02382 173 GAGKGQALAYLLKKLKAEGKAPVNTLVCGDSG-NDAELFSV 212 (413)
T ss_pred CCCHHHHHHHHHHHhhhcCCChhcEEEEeCCH-HHHHHHhc
Confidence 445778999999999 99999999999999 99998653
No 157
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.17 E-value=2.1e-05 Score=56.74 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=50.2
Q ss_pred cccCHHHHHHHHHhC-C-CeEEEEeCCC--------hhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHH-HcC-
Q 026634 144 IMPGTAQLCGFLDSK-K-IRRGLITRNI--------KEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICS-TWE- 210 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~-g-~~i~i~Sn~~--------~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~-~l~- 210 (235)
..|....-+++++.. | ..++++||+. ...+..+-++.|++ ..+- ..|| ..-.+..+ .+|
T Consensus 62 Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs------~kKP--~ct~E~~~y~~~N 133 (190)
T KOG2961|consen 62 IWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHS------VKKP--ACTAEEVEYHFGN 133 (190)
T ss_pred cCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeec------ccCC--CccHHHHHHHhCC
Confidence 344444445555543 3 4588888752 23355566778887 3331 2344 33333333 334
Q ss_pred ---CCCCcEEEEcCCchhhHHHHhh
Q 026634 211 ---VQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 211 ---~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
..+.+++||||.+.+||-+|+.
T Consensus 134 shv~~~se~~~vGDRlfTDI~~aN~ 158 (190)
T KOG2961|consen 134 SHVCTSSELIMVGDRLFTDIVYANR 158 (190)
T ss_pred cccCChhHeEEEccchhhhHhhhhh
Confidence 5899999999999999999985
No 158
>PLN02887 hydrolase family protein
Probab=98.17 E-value=5.2e-06 Score=73.96 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=33.1
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
+.+...+.|+.++++|++++++|+.....+...++.+++
T Consensus 326 Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 326 ISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDL 364 (580)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCc
Confidence 455567889999999999999999998888888887764
No 159
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.16 E-value=5.2e-06 Score=78.06 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=72.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-----------------CCCCCChHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-----------------RPYKPDPGPLL 203 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-----------------~~~KP~~~~~~ 203 (235)
+++||+.+.++.|++.|++++++|+.+...+..+.+.+|+. ++.+++++. ..+...|+--.
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 56899999999999999999999999999999999999996 444444321 12345566667
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 204 HICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 204 ~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.+++.++-..+.|+|+||+. ||..+.+++
T Consensus 608 ~iv~~lq~~g~~v~mvGDGv-ND~pAl~~A 636 (884)
T TIGR01522 608 KIVKALQKRGDVVAMTGDGV-NDAPALKLA 636 (884)
T ss_pred HHHHHHHHCCCEEEEECCCc-ccHHHHHhC
Confidence 77777776778999999999 999998764
No 160
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.14 E-value=5.5e-06 Score=65.51 Aligned_cols=40 Identities=5% Similarity=0.096 Sum_probs=34.3
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..++..++++.|+++|++++++|+.....+...++.+|+.
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 3456789999999999999999999988888888888863
No 161
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.11 E-value=8e-06 Score=62.89 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=52.7
Q ss_pred eE-EEEecCCCccCCcccHHHHHHHHcCCchHHHHHhcCC-chHHHHHHhhccChhHHHHHHHHHHHHH-HhccCCcccc
Q 026634 69 RG-VVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENP-TGIDILHHIESWSPDLQRHAYQTIADFE-RQGLDRLQIM 145 (235)
Q Consensus 69 k~-vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 145 (235)
|+ |.+||||||.|....+.+.+++..|.+.......... ..... ......+....+.+. +. ..+....++.
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~---~g~~~~e~~~~~~~~---~~~~~~f~~l~p~ 75 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEK---WGITEPEFYEKLWRF---YEEPGFFSNLPPI 75 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHH---HHHHSTTHHHHHHHH---HTSTTTTTT--B-
T ss_pred CcEEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHH---hCCCCHHHHHHHHHH---HhChhhhcCCCcc
Confidence 45 8899999999998888888888866652111111110 11111 111111112222221 22 2234567899
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChh
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKE 171 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~ 171 (235)
||+.++++.|.+.|..++++|+.+..
T Consensus 76 ~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 76 PGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 99999999999999888877766543
No 162
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.10 E-value=8.6e-06 Score=65.92 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=35.2
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..+.+.++|++|+++|++++++|+.....+..+.+.+++.
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3445678899999999999999999999999999999986
No 163
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=58.89 Aligned_cols=137 Identities=17% Similarity=0.105 Sum_probs=77.9
Q ss_pred CCceEEEEecCCCccCCcccHHHHHHHHcCCchHHHHHhcCCchHHHHHHhhccChhHHHHHHHHHHHHHHhccCCcccc
Q 026634 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
.++-+|-||+|.|++=+.+.|..--+.. .....+++.. ..+++....-..+...+.
T Consensus 61 ~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~------------sPgs~DyLkn------------q~FW~~vn~g~D~~SIPK 116 (237)
T COG3700 61 RPPIAVSFDIDDTVLFSSPGFWRGKKYF------------SPGSEDYLKN------------QVFWEKVNNGWDEFSIPK 116 (237)
T ss_pred CCCeeEeeccCCeeEecccccccCcccc------------CCChHHhhcC------------HHHHHHHhcCCccccchH
Confidence 3456899999999996665543322222 1111111110 111222222222334567
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHH----hhcCce-EE-EEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFH----NRFGIT-FS-PALSREFRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~----~~lgl~-f~-~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
+-++.++.....+|-+++.+|+....-++.+. +.+.+. .. .++.++ +.||...---..++..++. ++.
T Consensus 117 evA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd--k~k~~qy~Kt~~i~~~~~~----IhY 190 (237)
T COG3700 117 EVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD--KPKPGQYTKTQWIQDKNIR----IHY 190 (237)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC--CCCcccccccHHHHhcCce----EEe
Confidence 77889999999999999999987655444333 334444 22 233443 1233222223455666665 899
Q ss_pred cCCchhhHHHHhhh
Q 026634 220 GDSLKDDIDVVFNT 233 (235)
Q Consensus 220 GDs~~~Di~~A~~~ 233 (235)
|||. +||.+|+.+
T Consensus 191 GDSD-~Di~AAkea 203 (237)
T COG3700 191 GDSD-NDITAAKEA 203 (237)
T ss_pred cCCc-hhhhHHHhc
Confidence 9999 999999864
No 164
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=98.01 E-value=4.7e-05 Score=60.83 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=64.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-----C---------------------
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-----P--------------------- 194 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-----~--------------------- 194 (235)
...|.+.+.|..|++.|..+++=|-|+++++...++++++. |+.++++... .
T Consensus 142 Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv 221 (297)
T PF05152_consen 142 IRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDV 221 (297)
T ss_pred cCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeC
Confidence 45688889999999999999999999999999999999998 9999874311 0
Q ss_pred ----CCC-ChHHHHHHHHHcCCCC-CcEEEEcCCchhh
Q 026634 195 ----YKP-DPGPLLHICSTWEVQP-NEVMMVGDSLKDD 226 (235)
Q Consensus 195 ----~KP-~~~~~~~~~~~l~~~~-~~~v~iGDs~~~D 226 (235)
+-| .|....+.+++.|+.. ..+-.|+|-..||
T Consensus 222 ~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~Nn 259 (297)
T PF05152_consen 222 TNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNN 259 (297)
T ss_pred CcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCcccC
Confidence 023 4677888888888854 3445566665444
No 165
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.00 E-value=7.7e-05 Score=54.98 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=30.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHH---HHHHhhc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAV---DLFHNRF 180 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~---~~~~~~l 180 (235)
...+|+.++++.++++||++.-+|+.+.... +..+...
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 4779999999999999999999998875443 3444444
No 166
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.94 E-value=7.7e-05 Score=57.30 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=53.2
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce------EEEEEecC---------CC--CCCCChHHHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT------FSPALSRE---------FR--PYKPDPGPLLHI 205 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~------f~~i~~~~---------~~--~~KP~~~~~~~~ 205 (235)
...|++.++|+.+.+. +.++|.|.+...+++.++..+|+. +..+.... .+ .-|+- ..+
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL----~~l 119 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPL----GVI 119 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeec----HHh
Confidence 5789999999999885 999999999999999999988753 12222111 11 12321 222
Q ss_pred HHHcC--CCCCcEEEEcCCc
Q 026634 206 CSTWE--VQPNEVMMVGDSL 223 (235)
Q Consensus 206 ~~~l~--~~~~~~v~iGDs~ 223 (235)
-..+| .+.+++++|+|++
T Consensus 120 w~~l~~~~~~~ntiiVDd~p 139 (195)
T TIGR02245 120 WALLPEFYSMKNTIMFDDLR 139 (195)
T ss_pred hhhcccCCCcccEEEEeCCH
Confidence 22444 3789999999998
No 167
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.93 E-value=2.1e-05 Score=63.44 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
...++++.|+++|++++++|+.....+...++.+|+.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 4678889999999999999999988888888888863
No 168
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.93 E-value=5e-05 Score=70.16 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=61.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
+++||+.+.++.|++.|++++++|+.+...+..+.+.+|+.+.. +. .+..|+. ++++++ .+.+|+||||+
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~----~~-~p~~K~~----~v~~l~-~~~~v~mvGDg 637 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA----GL-LPEDKVK----AVTELN-QHAPLAMVGDG 637 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec----CC-CHHHHHH----HHHHHh-cCCCEEEEECC
Confidence 57899999999999999999999999999999999999986221 11 1112333 344444 34689999999
Q ss_pred chhhHHHHhhh
Q 026634 223 LKDDIDVVFNT 233 (235)
Q Consensus 223 ~~~Di~~A~~~ 233 (235)
. ||..+.++.
T Consensus 638 i-NDapAl~~A 647 (741)
T PRK11033 638 I-NDAPAMKAA 647 (741)
T ss_pred H-HhHHHHHhC
Confidence 9 999988753
No 169
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.88 E-value=2.6e-05 Score=64.61 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=60.5
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCC------------hhHHHHHHhhcCceEEEEEec-CCCCCCCChHHHHHHHHHc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNI------------KEAVDLFHNRFGITFSPALSR-EFRPYKPDPGPLLHICSTW 209 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~------------~~~~~~~~~~lgl~f~~i~~~-~~~~~KP~~~~~~~~~~~l 209 (235)
.+++.+..=+..|.+.||.+++.||.. ...++.+...+|+++....+. ....+||...+++...+..
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~ 183 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLE 183 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHh
Confidence 577888888999999999999999864 233566777788886554442 3348999999999998776
Q ss_pred C----CCCCcEEEEcCCc
Q 026634 210 E----VQPNEVMMVGDSL 223 (235)
Q Consensus 210 ~----~~~~~~v~iGDs~ 223 (235)
+ +.-..+.|+||-.
T Consensus 184 nd~~~Isek~s~fvgdaa 201 (422)
T KOG2134|consen 184 NDSVEISEKASIFVGDAA 201 (422)
T ss_pred hccceeeechhhhhhhhc
Confidence 5 3455666888854
No 170
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.72 E-value=0.00011 Score=66.07 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
+...+.++.|+++|++++++|+.....+..+.+.+|+.
T Consensus 436 ~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 436 STALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 34567899999999999999999999898888888864
No 171
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00013 Score=66.49 Aligned_cols=78 Identities=18% Similarity=0.332 Sum_probs=61.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGD 221 (235)
.+.|++.+.++.|++.|++++++|+.++..++.+.+.+|++ +.. .-.| +--.+..+++.-....++||||
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~A-------ellP--edK~~~V~~l~~~g~~VamVGD 607 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRA-------ELLP--EDKAEIVRELQAEGRKVAMVGD 607 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhec-------cCCc--HHHHHHHHHHHhcCCEEEEEeC
Confidence 57899999999999999999999999999999999999985 322 1222 2224445555555578999999
Q ss_pred CchhhHHHH
Q 026634 222 SLKDDIDVV 230 (235)
Q Consensus 222 s~~~Di~~A 230 (235)
+. ||-.+=
T Consensus 608 GI-NDAPAL 615 (713)
T COG2217 608 GI-NDAPAL 615 (713)
T ss_pred Cc-hhHHHH
Confidence 99 997653
No 172
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.69 E-value=0.0004 Score=64.23 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 200 GPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 200 ~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+++.+++ +++++.++++||+. ||..|-+.
T Consensus 660 ~al~~ll~--~~~~d~vl~~GD~~-nDe~Mf~~ 689 (726)
T PRK14501 660 RAVRRLLE--AGPYDFVLAIGDDT-TDEDMFRA 689 (726)
T ss_pred HHHHHHHh--cCCCCEEEEECCCC-ChHHHHHh
Confidence 34444444 56788999999999 99999765
No 173
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.68 E-value=0.00013 Score=69.00 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=67.9
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceE------EEEEecC-----------------CCCCCCCh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITF------SPALSRE-----------------FRPYKPDP 199 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f------~~i~~~~-----------------~~~~KP~~ 199 (235)
++++++.+.++.|++.|+++.++|+.+...+..+.+.+|+.- ...+++. ...+.-.|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 478999999999999999999999999999999999999851 1122321 01122334
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 200 GPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 200 ~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+--.++++.++-..+.|.|+||+. ||+.|.+++
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG~-ND~~alk~A 649 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDGV-NDAPALKKA 649 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCc-chHHHHHhC
Confidence 444666677776778899999999 999998753
No 174
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.62 E-value=0.00029 Score=63.99 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=61.1
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
++.||+.+.++.|++.|++++++|+.+...+..+.+.+|++ .+++ ...| +--...++.+.-....++|+||+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~--~v~a----~~~P--edK~~~v~~lq~~g~~VamvGDG 517 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD--DFIA----EATP--EDKIALIRQEQAEGKLVAMTGDG 517 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC--EEEc----CCCH--HHHHHHHHHHHHcCCeEEEECCC
Confidence 57899999999999999999999999999999999999985 2222 1222 22233333343345579999999
Q ss_pred chhhHHHHhh
Q 026634 223 LKDDIDVVFN 232 (235)
Q Consensus 223 ~~~Di~~A~~ 232 (235)
. ||..+-+.
T Consensus 518 ~-NDapAL~~ 526 (675)
T TIGR01497 518 T-NDAPALAQ 526 (675)
T ss_pred c-chHHHHHh
Confidence 9 99987553
No 175
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.60 E-value=0.00044 Score=59.84 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=64.3
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc-Cc------e----EEEEEecCC----------------
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GI------T----FSPALSREF---------------- 192 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l-gl------~----f~~i~~~~~---------------- 192 (235)
..+...|.+..+|+.|++.|.++.++||++..++...++.+ |- + ||.|++...
T Consensus 180 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~ 259 (448)
T PF05761_consen 180 KYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDT 259 (448)
T ss_dssp CCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEET
T ss_pred HHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEEC
Confidence 34456789999999999999999999999999998888643 54 3 898876321
Q ss_pred CCCC--------C-------ChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 193 RPYK--------P-------DPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 193 ~~~K--------P-------~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
..++ + ...-+..+++.+|....+|++|||....||..++..
T Consensus 260 ~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~ 315 (448)
T PF05761_consen 260 ETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKR 315 (448)
T ss_dssp TTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHH
T ss_pred CCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccc
Confidence 0111 0 012467778889999999999999999999887754
No 176
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.58 E-value=0.00039 Score=63.27 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=62.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
++.||+.+.++.|++.|++++++|+.+...+..+.+.+|++ .+++ .. .|+--....++++-..+-|.|+||+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId--~v~A----~~--~PedK~~iV~~lQ~~G~~VaMtGDG 516 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFLA----EA--TPEDKLALIRQEQAEGRLVAMTGDG 516 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--EEEc----cC--CHHHHHHHHHHHHHcCCeEEEECCC
Confidence 46899999999999999999999999999999999999985 2222 12 2333344555555556679999999
Q ss_pred chhhHHHHh
Q 026634 223 LKDDIDVVF 231 (235)
Q Consensus 223 ~~~Di~~A~ 231 (235)
. ||-.+=+
T Consensus 517 v-NDAPALa 524 (679)
T PRK01122 517 T-NDAPALA 524 (679)
T ss_pred c-chHHHHH
Confidence 9 9987644
No 177
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.54 E-value=0.0017 Score=50.42 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=68.5
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-----EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-----FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-----f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
...++++...++..+..|++++|.|.+.......+...-+-. ++..+.. ....|--...|.++.+.+|.++.++
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt-~iG~K~e~~sy~~I~~~Ig~s~~ei 200 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDT-TIGLKVESQSYKKIGHLIGKSPREI 200 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhc-cccceehhHHHHHHHHHhCCChhhe
Confidence 368999999999999999999999999888777666544322 2222111 1135666688999999999999999
Q ss_pred EEEcCCchhhHHHHhh
Q 026634 217 MMVGDSLKDDIDVVFN 232 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~ 232 (235)
+|.-|.. ....+|+.
T Consensus 201 LfLTd~~-~Ea~aa~~ 215 (254)
T KOG2630|consen 201 LFLTDVP-REAAAARK 215 (254)
T ss_pred EEeccCh-HHHHHHHh
Confidence 9999999 88777764
No 178
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.52 E-value=0.00054 Score=62.31 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=62.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|++ .+++ .. .|+--.++.++++-..+.|.|+||+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~--~v~A----~~--~PedK~~iV~~lQ~~G~~VaMtGDG 512 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD--RFVA----EC--KPEDKINVIREEQAKGHIVAMTGDG 512 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--eEEc----CC--CHHHHHHHHHHHHhCCCEEEEECCC
Confidence 47899999999999999999999999999999999999985 2221 12 3333355555555556779999999
Q ss_pred chhhHHHHh
Q 026634 223 LKDDIDVVF 231 (235)
Q Consensus 223 ~~~Di~~A~ 231 (235)
. ||-.+=+
T Consensus 513 v-NDAPALa 520 (673)
T PRK14010 513 T-NDAPALA 520 (673)
T ss_pred h-hhHHHHH
Confidence 9 9987644
No 179
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.50 E-value=0.0011 Score=62.00 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=27.5
Q ss_pred CChHHHHHHHH---HcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 197 PDPGPLLHICS---TWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 197 P~~~~~~~~~~---~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.|..++..+++ .+|..++.+++|||+. ||..|-+.+
T Consensus 762 nKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~-nDedMF~~~ 800 (854)
T PLN02205 762 SKGLVAKRLLSIMQERGMLPDFVLCIGDDR-SDEDMFEVI 800 (854)
T ss_pred CHHHHHHHHHHHHHhcCCCcccEEEEcCCc-cHHHHHHHh
Confidence 34456666653 4688999999999999 999986643
No 180
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.48 E-value=0.00025 Score=66.92 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=66.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCC-----------------CCCCCChHHHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF-----------------RPYKPDPGPLLHI 205 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~-----------------~~~KP~~~~~~~~ 205 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+.-+.+++++. ....-.|+--..+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~I 629 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERI 629 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHH
Confidence 46899999999999999999999999999999999999996333333321 1122334444555
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+.+.-..+.|.|+||+. ||..+=++
T Consensus 630 V~~Lq~~G~vVam~GDGv-NDaPALk~ 655 (902)
T PRK10517 630 VTLLKREGHVVGFMGDGI-NDAPALRA 655 (902)
T ss_pred HHHHHHCCCEEEEECCCc-chHHHHHh
Confidence 555555567899999999 99887554
No 181
>PLN02423 phosphomannomutase
Probab=97.41 E-value=0.0005 Score=55.07 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=23.8
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHh
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN 178 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~ 178 (235)
+.+...+++++|+++ ++++++|+.....+...+.
T Consensus 25 i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 25 ATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred CCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 445666778888876 8999999886555544443
No 182
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.35 E-value=0.0062 Score=53.01 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=58.2
Q ss_pred ceEEEEecCCCccCCcccHHHHHH---HHcCCch----------HHHHHhcCCchHHHH----HHhhccChhHHHHH-HH
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYR---AVLGEDE----------YKRVKAENPTGIDIL----HHIESWSPDLQRHA-YQ 129 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~---~~lg~~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~ 129 (235)
.+.++||+||||+.+...+..... ++-|... .-.....+....... ..+.++...+.+.. ..
T Consensus 8 ~~~~~fD~DGTLlrs~ssFpyFmlva~eagG~~R~~~LL~l~P~l~ll~~~~~~~~~lK~mi~v~f~Gl~~~die~vaRa 87 (498)
T PLN02499 8 SYSVVSELEGTLLKDADPFSYFMLVAFEASGLIRFALLLFLWPIIRLLDMLGMGDAALKLMIFVATAGVHESEIESVARA 87 (498)
T ss_pred cceEEEecccceecCCCccHHHHHHHHHhccHHHHHHHHHHhHHHHHHHhcCCchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 468999999999986666666555 3323221 111111121111111 12233333333222 12
Q ss_pred HHHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh-cCce
Q 026634 130 TIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGIT 183 (235)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~-lgl~ 183 (235)
....+..+ .+.++ .++..+..| +.+|+|..++-+++.+++. +|.+
T Consensus 88 vlpkf~~~-----dv~~e---~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 88 VLPKFYMD-----DVDME---AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred HhhHHHHh-----hCCHH---HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 22222211 22233 445567778 9999999999999999998 8865
No 183
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.31 E-value=0.00063 Score=64.70 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=64.5
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCC-----------------CCCCCChHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF-----------------RPYKPDPGPLL 203 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~-----------------~~~KP~~~~~~ 203 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+. -..+++++. ..+.-.|+--.
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~ 658 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ 658 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH
Confidence 56889999999999999999999999999999999999985 122333211 11222333334
Q ss_pred HHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 204 HICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 204 ~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+.+.+.-..+.|.|+||+. ||..|=++
T Consensus 659 ~iV~~lq~~g~vVam~GDGv-NDapALk~ 686 (941)
T TIGR01517 659 LLVLMLKDMGEVVAVTGDGT-NDAPALKL 686 (941)
T ss_pred HHHHHHHHCCCEEEEECCCC-chHHHHHh
Confidence 44444544556899999999 99987654
No 184
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.29 E-value=0.00068 Score=63.86 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=64.2
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCC-----------------CCCCCChHHHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF-----------------RPYKPDPGPLLHI 205 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~-----------------~~~KP~~~~~~~~ 205 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+.-+.++++.. ..+.-.|+--.++
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~i 594 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRI 594 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHH
Confidence 46889999999999999999999999999999999999986222333211 1112233333444
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+.+.-..+.|.|+||+. ||..+=+.
T Consensus 595 V~~lq~~G~vVam~GDGv-NDapALk~ 620 (867)
T TIGR01524 595 IGLLKKAGHTVGFLGDGI-NDAPALRK 620 (867)
T ss_pred HHHHHhCCCEEEEECCCc-ccHHHHHh
Confidence 444544556899999999 99887554
No 185
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.28 E-value=0.00049 Score=64.99 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=66.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCC-----------------CCCCCChHHHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF-----------------RPYKPDPGPLLHI 205 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~-----------------~~~KP~~~~~~~~ 205 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+.-+.++++.. ....-.|+--.++
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~i 629 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRV 629 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHH
Confidence 56799999999999999999999999999999999999985222333211 1122334444555
Q ss_pred HHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 206 CSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 206 ~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+.+.-..+.|.|+||+. ||..+=+.
T Consensus 630 V~~Lq~~G~vVamtGDGv-NDaPALk~ 655 (903)
T PRK15122 630 LKALQANGHTVGFLGDGI-NDAPALRD 655 (903)
T ss_pred HHHHHhCCCEEEEECCCc-hhHHHHHh
Confidence 555555567899999999 99887553
No 186
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.25 E-value=0.0005 Score=63.83 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCC-----------------------CCCCCCh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF-----------------------RPYKPDP 199 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~-----------------------~~~KP~~ 199 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+.- .+++++. ...+-.|
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~P 520 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT-NIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFP 520 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC-CCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCH
Confidence 578999999999999999999999999999999999999851 1111110 1122233
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 200 GPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 200 ~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+--..+.+.++-..+.|.|+||+. ||..+=+.
T Consensus 521 e~K~~iV~~lq~~G~~VamvGDGv-NDapAL~~ 552 (755)
T TIGR01647 521 EHKYEIVEILQKRGHLVGMTGDGV-NDAPALKK 552 (755)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCc-ccHHHHHh
Confidence 434445555555667899999999 99877553
No 187
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.18 E-value=0.0014 Score=50.68 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
+..++..|++.|++++.+|+.....+....+.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 457789999999999999999888888888888876
No 188
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0015 Score=59.93 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=59.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
++.|++...++.|++.|++++++|+.+...++.+.+..|+ +.+++. -+|... ....+++.-....++||||+
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi--~~V~ae----v~P~~K--~~~Ik~lq~~~~~VaMVGDG 794 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGI--DNVYAE----VLPEQK--AEKIKEIQKNGGPVAMVGDG 794 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCc--ceEEec----cCchhh--HHHHHHHHhcCCcEEEEeCC
Confidence 5789999999999999999999999999999999999994 444432 233211 23334444445789999999
Q ss_pred chhhHHH
Q 026634 223 LKDDIDV 229 (235)
Q Consensus 223 ~~~Di~~ 229 (235)
. ||-.+
T Consensus 795 I-NDaPA 800 (951)
T KOG0207|consen 795 I-NDAPA 800 (951)
T ss_pred C-CccHH
Confidence 9 98654
No 189
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.08 E-value=0.0017 Score=62.41 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=65.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-E-----------EEEEecCCC-----------------
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-F-----------SPALSREFR----------------- 193 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f-----------~~i~~~~~~----------------- 193 (235)
++.|++.+.++.|++.|++++++|+.+...+..+.+.+|+. - ..++++...
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 67899999999999999999999999999999999999984 1 124443211
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
...-.|+--..+.+.+.-..+.|.|+||+. ||..|=+.
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GDGv-NDapaLk~ 763 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGDGV-NDSPSLKM 763 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCCCc-chHHHHHh
Confidence 122233333444555555567899999999 99987654
No 190
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.08 E-value=0.015 Score=45.30 Aligned_cols=42 Identities=12% Similarity=0.255 Sum_probs=36.1
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..++.||+.+.++.|.+. +.-+|+|.+.+.++......+|++
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~P 122 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVP 122 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCC
Confidence 357899999999999887 777888889889999988888875
No 191
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0013 Score=48.52 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccCCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 126 HAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
++...+++++..+.+...+..++...|..++++ -+++.+|..-....+
T Consensus 55 e~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~ 102 (194)
T COG5663 55 EFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE-HRLIYITARKADLTR 102 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHH
Confidence 334444444443444446667888888998887 567777766544433
No 192
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.003 Score=59.93 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=67.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--E--EEEEecCCCC-----------------CCCChHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--F--SPALSREFRP-----------------YKPDPGP 201 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f--~~i~~~~~~~-----------------~KP~~~~ 201 (235)
++.+++++.++.|+++|+++.++|+.+...+..+.+.+|+. - +.+++++... .+=.|+-
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~q 626 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQ 626 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHH
Confidence 68999999999999999999999999999999999999987 2 2255543211 2223343
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 202 LLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
-.++.+.++-...-|.|.||+. ||..|=+.
T Consensus 627 K~~IV~~lq~~g~vVamtGDGv-NDapALk~ 656 (917)
T COG0474 627 KARIVEALQKSGHVVAMTGDGV-NDAPALKA 656 (917)
T ss_pred HHHHHHHHHhCCCEEEEeCCCc-hhHHHHHh
Confidence 4445555555567899999999 99988664
No 193
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.71 E-value=0.0079 Score=53.34 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=59.5
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
.+.+++.+.++.|++.|+++.++|+.+...+..+.+.+|+. +.-.|+--....+++.-....+.|+||+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi~-----------~~~~p~~K~~~v~~l~~~g~~v~~vGDg 415 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGIF-----------ARVTPEEKAALVEALQKKGRVVAMTGDG 415 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCce-----------eccCHHHHHHHHHHHHHCCCEEEEECCC
Confidence 57899999999999999999999999999999999999961 1112222234444443344789999999
Q ss_pred chhhHHHHhh
Q 026634 223 LKDDIDVVFN 232 (235)
Q Consensus 223 ~~~Di~~A~~ 232 (235)
. ||..+-+.
T Consensus 416 ~-nD~~al~~ 424 (499)
T TIGR01494 416 V-NDAPALKK 424 (499)
T ss_pred h-hhHHHHHh
Confidence 9 99987543
No 194
>PLN03017 trehalose-phosphatase
Probab=96.71 E-value=0.004 Score=52.42 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=29.5
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR 179 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~ 179 (235)
.+.+++.+.|+.|. +|++++|+|+.....+..+...
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~l 168 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVKL 168 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhcc
Confidence 46788888999998 6789999999988888776543
No 195
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.68 E-value=0.0088 Score=48.85 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=48.1
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChh---HHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKE---AVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~---~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
..++||+.++|+.|+++|++++++||+... .....++.+|+. .+.++++. ......+++.+..+.++
T Consensus 17 ~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~--------~~~~~~l~~~~~~~~~v 88 (279)
T TIGR01452 17 ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA--------LCAARLLRQPPDAPKAV 88 (279)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH--------HHHHHHHHhhCcCCCEE
Confidence 368999999999999999999999997533 233456778876 34444321 23333444433344567
Q ss_pred EEEcCC
Q 026634 217 MMVGDS 222 (235)
Q Consensus 217 v~iGDs 222 (235)
+++|+.
T Consensus 89 ~~iG~~ 94 (279)
T TIGR01452 89 YVIGEE 94 (279)
T ss_pred EEEcCH
Confidence 777764
No 196
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.52 E-value=0.0069 Score=58.11 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=38.2
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
++.+++.+.++.|++.|++++++|+.+...+..+.+.+|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 56899999999999999999999999999999999999983
No 197
>PLN02151 trehalose-phosphatase
Probab=96.41 E-value=0.0068 Score=50.87 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=31.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
.+.+++.+.|+.|.+ +++++|+|+.....+..++...++
T Consensus 120 ~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~~~~l 158 (354)
T PLN02151 120 FMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVKLTEL 158 (354)
T ss_pred cCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcCCccc
Confidence 577888999999985 479999999998888877754443
No 198
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.36 E-value=0.016 Score=49.52 Aligned_cols=91 Identities=23% Similarity=0.212 Sum_probs=73.6
Q ss_pred cccc--CHHHHHHHHHhCCCeEEEEeCC--ChhHHHHHHhhcCceEEE--EE-ecCCCCCCCChHHHHHHHHHcCCCCCc
Q 026634 143 QIMP--GTAQLCGFLDSKKIRRGLITRN--IKEAVDLFHNRFGITFSP--AL-SREFRPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 143 ~~~~--~~~~~l~~l~~~g~~i~i~Sn~--~~~~~~~~~~~lgl~f~~--i~-~~~~~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
.++| ...++.+.+.+.|.+++++|.- +....+.++...|.++.- ++ +++....|-....|..+++.-+++|.+
T Consensus 97 vLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~ 176 (635)
T COG5610 97 VLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKK 176 (635)
T ss_pred EeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhh
Confidence 3444 4568999999999999999984 556678888888987332 33 456667888889999999999999999
Q ss_pred EEEEcCCchhhHHHHhhh
Q 026634 216 VMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~ 233 (235)
.+++||+-..|..+++++
T Consensus 177 w~H~GDN~~aD~l~pk~L 194 (635)
T COG5610 177 WIHCGDNWVADYLKPKNL 194 (635)
T ss_pred eEEecCchhhhhcCcccc
Confidence 999999998888887754
No 199
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=96.28 E-value=0.018 Score=55.62 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
++.|++.+.++.|++.|+++.++|+.+...+..+.+..|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999999999984
No 200
>PLN02580 trehalose-phosphatase
Probab=96.19 E-value=0.014 Score=49.58 Aligned_cols=40 Identities=5% Similarity=-0.012 Sum_probs=33.3
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
..+.+++.+.|+.|.+. .+++|+|+.....+..++...++
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~~l 179 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLTEL 179 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCCCc
Confidence 35778999999999988 58999999999998888765443
No 201
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=96.16 E-value=0.036 Score=39.01 Aligned_cols=82 Identities=7% Similarity=0.037 Sum_probs=59.4
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCCh-hHHHHHHhhcCce-----------EEEEEecCCCCCCCChHHHHHHHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIK-EAVDLFHNRFGIT-----------FSPALSREFRPYKPDPGPLLHICST 208 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~-~~~~~~~~~lgl~-----------f~~i~~~~~~~~KP~~~~~~~~~~~ 208 (235)
....+++....|..|++.|+.++++|++.. +.+...++.+.+. |..+..++ ..+-..|...-..
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~----gsklghfke~~n~ 117 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGD----GSKLGHFKEFTNN 117 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecC----cccchhHHHHhhc
Confidence 457899999999999999999999998754 4456677776665 22222222 2334567778788
Q ss_pred cCCCCCcEEEEcCCchhhH
Q 026634 209 WEVQPNEVMMVGDSLKDDI 227 (235)
Q Consensus 209 l~~~~~~~v~iGDs~~~Di 227 (235)
.|..-.+..++.|.. .+-
T Consensus 118 s~~~~k~~~~fdDes-rnk 135 (144)
T KOG4549|consen 118 SNSIEKNKQVFDDES-RNK 135 (144)
T ss_pred cCcchhceeeecccc-cCC
Confidence 888888889998877 543
No 202
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.15 E-value=0.0055 Score=49.79 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=34.6
Q ss_pred CCCCChHHHHHHHHHcCC---CCCcEEEEcCCchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEV---QPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~---~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+-.|..+++.+++.+|+ +++++++|||+. ||++|-+.
T Consensus 184 ~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~-NDi~Ml~~ 224 (271)
T PRK03669 184 ASAGKDQAANWLIATYQQLSGTRPTTLGLGDGP-NDAPLLDV 224 (271)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCH-HHHHHHHh
Confidence 567788999999999999 999999999999 99999664
No 203
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.085 Score=43.31 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=54.7
Q ss_pred CcccccCHHHHHHHHHhCC-CeEEEEeCCChhHHHHHHh---hcCce------------EEEEEecCCCCCCCChHHHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHN---RFGIT------------FSPALSREFRPYKPDPGPLLH 204 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g-~~i~i~Sn~~~~~~~~~~~---~lgl~------------f~~i~~~~~~~~KP~~~~~~~ 204 (235)
...++||+..+.+.|.+.| .++..+||++...-..+.+ .-+++ ++.++.. ...-|...+..
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~s---ga~rK~~~l~n 270 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIES---GAARKGQSLRN 270 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccc---hhhhcccHHHH
Confidence 3479999999999999998 8899999998665443333 33332 2222211 11122345555
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHH
Q 026634 205 ICSTWEVQPNEVMMVGDSLKDDIDV 229 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iGDs~~~Di~~ 229 (235)
++..+ +..+.+.|||+-..|.+.
T Consensus 271 il~~~--p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 271 ILRRY--PDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHhC--CCceEEEecCCCCcCHHH
Confidence 66655 456889999998888764
No 204
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.98 E-value=0.0079 Score=48.42 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHHHHcCCC--CCcEEEEcCCchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEVQ--PNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~--~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+-.|..+++++++.+|++ ++++++|||+. ||++|.+.
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~-ND~~Ml~~ 212 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSP-NDLPLLEV 212 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCH-hhHHHHHH
Confidence 4667778999999999999 99999999999 99999875
No 205
>PLN02887 hydrolase family protein
Probab=95.94 E-value=0.0067 Score=54.47 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
.+-.|..+++.+++.+|+++++|++|||+. ||++|-+.
T Consensus 504 ~gvSKG~ALk~L~e~lGI~~eeviAFGDs~-NDIeMLe~ 541 (580)
T PLN02887 504 PGTSKGNGVKMLLNHLGVSPDEIMAIGDGE-NDIEMLQL 541 (580)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHEEEEecch-hhHHHHHH
Confidence 567788999999999999999999999999 99999764
No 206
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=95.73 E-value=0.036 Score=53.67 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=37.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
++.+|+.+.++.|++.|+++.++|+...+.+..+....|+-
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLL 671 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCC
Confidence 68899999999999999999999999988888888777764
No 207
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.035 Score=44.81 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=33.7
Q ss_pred cccccCHHHHHHHHHhC-CCeEEEEeCCChhHHHHHHhhcCce
Q 026634 142 LQIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~-g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..+.+++.++|+.|..+ ...++|+|+.....++..+.-.|+.
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i~ 81 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGIG 81 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCcc
Confidence 36788999999999988 3359999999988888887755654
No 208
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.036 Score=45.91 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=60.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc-Cce----EEEEEecCC------CCCCCChH------------
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GIT----FSPALSREF------RPYKPDPG------------ 200 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l-gl~----f~~i~~~~~------~~~KP~~~------------ 200 (235)
-.|....+++.|+++|-++.++||++..++..=+..+ |-+ ||.++.... ...+|-..
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdk 320 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDK 320 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhh
Confidence 3467788999999999999999999999987655433 433 787664211 01222111
Q ss_pred -------------HHHHHHHHcCCCCCcEEEEcCCchhhHHH
Q 026634 201 -------------PLLHICSTWEVQPNEVMMVGDSLKDDIDV 229 (235)
Q Consensus 201 -------------~~~~~~~~l~~~~~~~v~iGDs~~~Di~~ 229 (235)
.+...++.-|....+|+++||...+|+..
T Consensus 321 v~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad 362 (510)
T KOG2470|consen 321 VDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLAD 362 (510)
T ss_pred hhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhh
Confidence 24445566688899999999999888854
No 209
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.52 E-value=0.092 Score=41.90 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=45.4
Q ss_pred cCHHHHHHHHHhC------CCeEEEEeCCCh---hHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 146 PGTAQLCGFLDSK------KIRRGLITRNIK---EAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 146 ~~~~~~l~~l~~~------g~~i~i~Sn~~~---~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
......|..++++ -+++++||..+. +.+..-++.+|+.+|..+-- .+-||. .+++.++-.
T Consensus 167 ~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFL---gG~~K~----~vL~~~~ph---- 235 (264)
T PF06189_consen 167 KDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFL---GGLPKG----PVLKAFRPH---- 235 (264)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHh---CCCchh----HHHHhhCCC----
Confidence 3344444555433 478999997543 44555567888875542210 133332 344445443
Q ss_pred EEEcCCchhhHHHHhhhh
Q 026634 217 MMVGDSLKDDIDVVFNTF 234 (235)
Q Consensus 217 v~iGDs~~~Di~~A~~~~ 234 (235)
+|++|+. ..++.|....
T Consensus 236 IFFDDQ~-~H~~~a~~~v 252 (264)
T PF06189_consen 236 IFFDDQD-GHLESASKVV 252 (264)
T ss_pred EeecCch-hhhhHhhcCC
Confidence 7999999 9999887543
No 210
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.50 E-value=0.032 Score=44.35 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceE--EEEEe----c-CCC----CCCCChHHHHH---H
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITF--SPALS----R-EFR----PYKPDPGPLLH---I 205 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f--~~i~~----~-~~~----~~KP~~~~~~~---~ 205 (235)
....+.+|+.++++.|+++++++.|+|.+-...++.+++..|..+ -.+++ - +.+ -..|--..|.+ +
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 356789999999999999999999999999999999998887651 11111 1 111 01111111111 1
Q ss_pred H---HHc-CC-CCCcEEEEcCCchhhHHHHhhh
Q 026634 206 C---STW-EV-QPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 206 ~---~~l-~~-~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+ ..+ .+ ...+++..||+. .|+.||..+
T Consensus 167 l~~~~~~~~~~~R~NvlLlGDsl-gD~~Ma~G~ 198 (246)
T PF05822_consen 167 LEDSPYFKQLKKRTNVLLLGDSL-GDLHMADGV 198 (246)
T ss_dssp HTTHHHHHCTTT--EEEEEESSS-GGGGTTTT-
T ss_pred ccCchHHHHhccCCcEEEecCcc-CChHhhcCC
Confidence 1 111 22 356899999999 999998643
No 211
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=95.44 E-value=0.043 Score=44.92 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=31.1
Q ss_pred ccccCHHHHHHHHHhC----CCeEEEEeCCCh----hHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSK----KIRRGLITRNIK----EAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~----g~~i~i~Sn~~~----~~~~~~~~~lgl~ 183 (235)
.+.+++.+.++.|.+. .++.+.+||+.. ..+..+-+.+|..
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE 99 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc
Confidence 7889999999999988 899999999742 2234444566655
No 212
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=95.43 E-value=0.046 Score=41.72 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=31.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce----EEEEEecC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSPALSRE 191 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~----f~~i~~~~ 191 (235)
...|.+.++|+.|++. +.+++|-+++-. ...+.+|-. ||.+++.+
T Consensus 28 ~~~~e~~~~l~~lr~~-v~ig~VggsDl~---k~~eqlG~~Vl~~fDY~F~EN 76 (252)
T KOG3189|consen 28 KVTPEMLEFLQKLRKK-VTIGFVGGSDLS---KQQEQLGDNVLEEFDYVFSEN 76 (252)
T ss_pred cCCHHHHHHHHHHhhh-eEEEEeecHHHH---HHHHHhchhHHhhhcccccCC
Confidence 5778889999999887 888888876543 333444544 77777644
No 213
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.058 Score=49.67 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=66.1
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EE----EEEecCCC-----------------CCCCCh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS----PALSREFR-----------------PYKPDP 199 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~----~i~~~~~~-----------------~~KP~~ 199 (235)
+|.+++.+.++.|++.|+++.++|+.+...+..+.++.|+. -+ ..++++.. -..-.|
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P 663 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEP 663 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCc
Confidence 68899999999999999999999999999999999999986 11 12333210 112234
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 200 GPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 200 ~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
+--.++.+.|+-..+=|.|-||+. ||-.+=+
T Consensus 664 ~HK~kIVeaLq~~geivAMTGDGV-NDApALK 694 (972)
T KOG0202|consen 664 QHKLKIVEALQSRGEVVAMTGDGV-NDAPALK 694 (972)
T ss_pred hhHHHHHHHHHhcCCEEEecCCCc-cchhhhh
Confidence 445666667776777889999999 9976544
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.06 Score=46.98 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=62.3
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
..||.+|=+.+|++.|++.+.+|+.++-....+.+..|++ |-. ..+| +--.++.++.+-...=+.|.||+
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiA-------eatP--EdK~~~I~~eQ~~grlVAMtGDG 518 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIA-------EATP--EDKLALIRQEQAEGRLVAMTGDG 518 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhh-------cCCh--HHHHHHHHHHHhcCcEEEEcCCC
Confidence 5799999999999999999999999999999999999987 433 2343 34466667777777889999999
Q ss_pred chhhHHH
Q 026634 223 LKDDIDV 229 (235)
Q Consensus 223 ~~~Di~~ 229 (235)
- ||-.+
T Consensus 519 T-NDAPA 524 (681)
T COG2216 519 T-NDAPA 524 (681)
T ss_pred C-Ccchh
Confidence 9 99765
No 215
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.03 E-value=0.029 Score=45.27 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhH---HHHHHhhcCce--EEEEEe
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT--FSPALS 189 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~lgl~--f~~i~~ 189 (235)
+.|++.++++.|+++|++++++||+.... ....++.+|++ .+.+++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~t 72 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFT 72 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEc
Confidence 89999999999999999999999976654 55666778877 445555
No 216
>PRK10444 UMP phosphatase; Provisional
Probab=94.82 E-value=0.11 Score=41.69 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=52.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHH---HHhhcCce--EEEEEecC-----CCCCCC-------ChHHHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL---FHNRFGIT--FSPALSRE-----FRPYKP-------DPGPLLHI 205 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~---~~~~lgl~--f~~i~~~~-----~~~~KP-------~~~~~~~~ 205 (235)
.+.|++.++++.|+++|.+++++||+....... .++.+|++ .+.++++. ....++ -...+...
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~ 96 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIHE 96 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHH
Confidence 789999999999999999999999988755444 44567876 45555531 011111 11334555
Q ss_pred HHHcCCC----CCcEEEEcCCc
Q 026634 206 CSTWEVQ----PNEVMMVGDSL 223 (235)
Q Consensus 206 ~~~l~~~----~~~~v~iGDs~ 223 (235)
++..|+. ..++|++|...
T Consensus 97 l~~~g~~~~~~~~~~Vvvg~~~ 118 (248)
T PRK10444 97 LYKAGFTITDINPDFVIVGETR 118 (248)
T ss_pred HHHCcCEecCCCCCEEEEeCCC
Confidence 5555543 23577787765
No 217
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.45 E-value=0.053 Score=50.84 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=33.9
Q ss_pred ccccCHHHHHHHHHhC-CCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~-g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+.|++.++|+.|.+. +..++|+|+.....++..+...++.
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l~ 573 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYNIW 573 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCCc
Confidence 5678899999999875 6789999999999999888765544
No 218
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=94.39 E-value=0.045 Score=43.25 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHcCC--CCCcEEEEcCCchhhHHHHhhh
Q 026634 195 YKPDPGPLLHICSTWEV--QPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~--~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
+-.|+.+.+.+++.+++ .+.+|++|||+. ||+.|.+.+
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~-nD~~ml~~a 218 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSE-NDFPMFEVV 218 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCH-HHHHHHHhC
Confidence 44456677888888866 777999999999 999997743
No 219
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.75 E-value=0.16 Score=48.17 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=34.2
Q ss_pred ccccCHHHHHHHHHhC-CCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~-g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+.|++.++|+.|.+. +..++|+|+.....++..+...++.
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L~ 663 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDMW 663 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCce
Confidence 5678889999999875 6789999999999999888776654
No 220
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.039 Score=39.63 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=47.9
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHc--CCchHHHHHhcCCchHHHHHHhhccChhHHH--HHHHHHHH--HHHhccCC
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL--GEDEYKRVKAENPTGIDILHHIESWSPDLQR--HAYQTIAD--FERQGLDR 141 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~ 141 (235)
.|.+..|||-||.|....|...++-.. +++. ..+..|+..... .+- .+.+ ++..+...
T Consensus 3 kk~iaIDmD~vLadll~ewv~~~N~y~D~~lk~---------------~di~gwdik~yv~~~~g-~i~~il~ep~fFRn 66 (180)
T COG4502 3 KKTIAIDMDTVLADLLREWVKRYNIYKDKLLKM---------------SDIKGWDIKNYVKPECG-KIYDILKEPHFFRN 66 (180)
T ss_pred CceEEeeHHHHHHHHHHHHHHHhhhccccCcCh---------------HhhcccchhhccCccCC-eeeeeccCcchhhh
Confidence 689999999999987777766655221 1110 111111111000 000 0000 11112334
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRN 168 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~ 168 (235)
....|++.+.++.|.+. +.++|+|..
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEec
Confidence 57889999999999988 899999976
No 221
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=93.14 E-value=0.086 Score=41.86 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=22.1
Q ss_pred cccccCHHHHHHHHHhC-CCeEEEEeCCChhHHHHHHhh
Q 026634 142 LQIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNR 179 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~-g~~i~i~Sn~~~~~~~~~~~~ 179 (235)
..+.+++.++|+.|.+. +..++|+|+......+.+...
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~ 56 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGI 56 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCC
Confidence 35778889999999876 335999999887775555433
No 222
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=93.04 E-value=0.091 Score=47.00 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.1
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNI 169 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~ 169 (235)
-..|+.++....+++||++..+|...
T Consensus 559 Th~GVAkLyt~Ik~NGYk~lyLSARa 584 (738)
T KOG2116|consen 559 THTGVAKLYTKIKENGYKILYLSARA 584 (738)
T ss_pred hhhhHHHHHHHHHhCCeeEEEEehhh
Confidence 34789999999999999999999753
No 223
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=0.43 Score=37.98 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=60.0
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc-Cce-EEEEEe-----cCCC----CCCCC-------hHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GIT-FSPALS-----REFR----PYKPD-------PGPL 202 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l-gl~-f~~i~~-----~~~~----~~KP~-------~~~~ 202 (235)
...+.+|..++...|+++++++.+.|.+.-..++.+.... ++. +..+++ .+++ ..+|- -..+
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 3467889999999999999999999999988888877544 332 111111 0011 11111 1233
Q ss_pred HHHHHHcC--CCCCcEEEEcCCchhhHHHHhh
Q 026634 203 LHICSTWE--VQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 203 ~~~~~~l~--~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
+...+.+. -...++++.||+. .|+.||--
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsi-gdl~ma~g 246 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSI-GDLHMADG 246 (298)
T ss_pred HhhhHHHhhccCCceEEEecccc-ccchhhcC
Confidence 44344443 3577899999999 99998854
No 224
>PLN03190 aminophospholipid translocase; Provisional
Probab=92.68 E-value=0.63 Score=45.68 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=34.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
++.+|+.+.++.|++.|+++.++|+.....+..+....|+
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 6889999999999999999999999887777777655444
No 225
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=91.95 E-value=0.2 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=19.7
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCC
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNI 169 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~ 169 (235)
..||..+....-.+||+|..+|...
T Consensus 405 h~gVAkLYtdI~rNGYkI~YltsR~ 429 (580)
T COG5083 405 HNGVAKLYTDIDRNGYKIKYLTSRS 429 (580)
T ss_pred hcchhhhhhhhccCceEEEEEeccc
Confidence 4577777888888999998888754
No 226
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.23 E-value=0.35 Score=39.27 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=37.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
...+++.++++.|++.|++++++|+.+...+...++.+|+.
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 45677899999999999999999999999999999999976
No 227
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.19 E-value=1.2 Score=35.37 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=36.0
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhH---HHHHHhh-cCce--EEEEEec
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNR-FGIT--FSPALSR 190 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~-lgl~--f~~i~~~ 190 (235)
..++|++.+++..++++|+++.++||+.... ....+.. +|+. .+.++++
T Consensus 13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits 67 (236)
T TIGR01460 13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITS 67 (236)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeH
Confidence 4678999999999999999999999876332 3333444 6776 5566653
No 228
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=90.91 E-value=0.027 Score=45.27 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=52.7
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEE------ecCCCCCCCChHHHHHHHHHcCCC
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPAL------SREFRPYKPDPGPLLHICSTWEVQ 212 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~------~~~~~~~KP~~~~~~~~~~~l~~~ 212 (235)
+..+|++.++|...-+. +.+++.|.+...++..++..+.-. +...+ ..+...-| -+..+|-+
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvK--------dls~~~~d 200 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVK--------DLSVLGRD 200 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEE--------EcceeccC
Confidence 45689999999998877 899999999999999888877652 22211 11111222 22566778
Q ss_pred CCcEEEEcCCc
Q 026634 213 PNEVMMVGDSL 223 (235)
Q Consensus 213 ~~~~v~iGDs~ 223 (235)
..+++.|+|++
T Consensus 201 L~~viIiDNsP 211 (262)
T KOG1605|consen 201 LSKVIIVDNSP 211 (262)
T ss_pred cccEEEEcCCh
Confidence 89999999998
No 229
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=90.70 E-value=1.5 Score=40.30 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEE--cCCchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMV--GDSLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~i--GDs~~~Di~~A~~ 232 (235)
.+-.|..+++.+++.+|++.++++.| ||+. ||+.|-+.
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~~eViafalGDs~-NDisMLe~ 649 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNFGNIHTFGLGDSE-NDYSMLET 649 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEEcCCcH-hhHHHHHh
Confidence 35677889999999999999999999 9999 99998653
No 230
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=90.54 E-value=0.52 Score=36.83 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
...++++.|+++|++++++||.+...+..+++.+|+.
T Consensus 20 ~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3789999999999999999999999999999999874
No 231
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=89.59 E-value=1 Score=38.07 Aligned_cols=16 Identities=44% Similarity=0.341 Sum_probs=14.2
Q ss_pred CceEEEEecCCCccCC
Q 026634 67 RLRGVVFDMDGTLTVP 82 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~ 82 (235)
..+.|-||=|+||++.
T Consensus 146 ~L~LvTFDgDvTLY~D 161 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYED 161 (408)
T ss_pred CceEEEEcCCcccccC
Confidence 5899999999999954
No 232
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=88.73 E-value=0.88 Score=35.68 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+.+...+.|++|+++|++++++|+.+...+....+.+|+.
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 46678899999999999999999999999998888888876
No 233
>PTZ00174 phosphomannomutase; Provisional
Probab=88.33 E-value=0.46 Score=38.04 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcC----CchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGD----SLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGD----s~~~Di~~A~~ 232 (235)
.+-.|..+++.++++ ++++++||| +. ||++|-+.
T Consensus 185 ~gvsKg~al~~L~~~----~~eviafGD~~~~~~-NDieMl~~ 222 (247)
T PTZ00174 185 KGWDKTYCLRHLEND----FKEIHFFGDKTFEGG-NDYEIYND 222 (247)
T ss_pred CCCcHHHHHHHHHhh----hhhEEEEcccCCCCC-CcHhhhhc
Confidence 566778899999888 699999999 88 99999763
No 234
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=87.97 E-value=2.1 Score=40.12 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=38.5
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
+..||+++.++.|+..|+.+-.+|+.+-..++.+....|+.
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGIL 687 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGIL 687 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccc
Confidence 45799999999999999999999999999999999999987
No 235
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=87.45 E-value=1.1 Score=36.17 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=37.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+.|...+.+++++++|++++++|+.+...+...++.+++.
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 46778899999999999999999999999888888988875
No 236
>PLN02423 phosphomannomutase
Probab=87.02 E-value=0.58 Score=37.46 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcC----CchhhHHHHh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGD----SLKDDIDVVF 231 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGD----s~~~Di~~A~ 231 (235)
.+-.|..+++.++ ++++|++||| +. ||++|-+
T Consensus 186 ~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~-ND~eMl~ 221 (245)
T PLN02423 186 QGWDKTYCLQFLE-----DFDEIHFFGDKTYEGG-NDHEIFE 221 (245)
T ss_pred CCCCHHHHHHHhc-----CcCeEEEEeccCCCCC-CcHHHHh
Confidence 4555666666665 8999999999 68 9999976
No 237
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=86.63 E-value=1.2 Score=34.67 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=36.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+.+...++++.|++.|++++++|+.+...+..+++.+|+.
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 46677889999999999999999999999898888888864
No 238
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.42 E-value=6.5 Score=32.42 Aligned_cols=77 Identities=8% Similarity=-0.014 Sum_probs=47.9
Q ss_pred HHHhCCCeEEE-EeCCChhHHHHHHhhcCce------EEEEEecCC-----------------CCCCCChHHHHHHHHHc
Q 026634 154 FLDSKKIRRGL-ITRNIKEAVDLFHNRFGIT------FSPALSREF-----------------RPYKPDPGPLLHICSTW 209 (235)
Q Consensus 154 ~l~~~g~~i~i-~Sn~~~~~~~~~~~~lgl~------f~~i~~~~~-----------------~~~KP~~~~~~~~~~~l 209 (235)
..+++-+.--+ .+...... ...+...|+. |-++++... ..+.+|..+.+.+.+.+
T Consensus 142 ~A~~Re~SEp~~w~~~~~~~-~~~~~~~g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~~~dKg~A~~~L~~~y 220 (302)
T PRK12702 142 RAQKREYSEIFSYSGDPARL-REAFAQQEANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPNSLPGEQAVQLLLDCY 220 (302)
T ss_pred HHHhccCCcceEecCCHHHH-HHHHHHcCCeEEecCceEEecccccccccccccccccccccccCCCCHHHHHHHHHHHH
Confidence 33444343333 35444444 7777777776 555554110 01457778888888877
Q ss_pred CCC--CCcEEEEcCCchhhHHHHhh
Q 026634 210 EVQ--PNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 210 ~~~--~~~~v~iGDs~~~Di~~A~~ 232 (235)
+-. +-.++.+|||+ ||+.|=++
T Consensus 221 ~~~~~~~~tiaLGDsp-ND~~mLe~ 244 (302)
T PRK12702 221 QRHLGPIKALGIGCSP-PDLAFLRW 244 (302)
T ss_pred HhccCCceEEEecCCh-hhHHHHHh
Confidence 653 44899999999 99998654
No 239
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=85.91 E-value=3.5 Score=33.84 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=34.4
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHH---hhcCce
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFH---NRFGIT 183 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~---~~lgl~ 183 (235)
...+.||+.+++..|++.|-++.++||+.....+... +.+|+.
T Consensus 36 g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 36 GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 4478999999999999999999999998766655444 456654
No 240
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=83.11 E-value=2.5 Score=38.40 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=43.6
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---E-EEEEecCC
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---F-SPALSREF 192 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f-~~i~~~~~ 192 (235)
.+++.|++.++|+.+.+. +.+.|+|-+.+.++..+++.+.-. | +.|++.+.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde 253 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDE 253 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecC
Confidence 467899999999999987 999999999999999999888766 5 45777654
No 241
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=82.98 E-value=6.8 Score=33.07 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=52.9
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFR-PYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
.-.||+.-++..+. +.+.|+++|+...-.+..+++.++-. -..++++... ..-++ .+=+..++-+++++++
T Consensus 214 ~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~H----vKdls~LNRdl~kViv 288 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGHH----VKDLSKLNRDLQKVIV 288 (393)
T ss_pred ccCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhcCCcceEEEEEecCcccccCccc----hhhhhhhccccceeEE
Confidence 56799999999987 56999999998888888888877654 1223333322 11111 3336778999999999
Q ss_pred EcCCc
Q 026634 219 VGDSL 223 (235)
Q Consensus 219 iGDs~ 223 (235)
|+=..
T Consensus 289 Vd~d~ 293 (393)
T KOG2832|consen 289 VDFDA 293 (393)
T ss_pred EEccc
Confidence 97544
No 242
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=82.81 E-value=4.6 Score=32.22 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 196 KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
.-|.+.|+++.+++|-+.-.-++|||+. ..-.+|+.+
T Consensus 213 vGK~~cFe~I~~Rfg~p~~~f~~IGDG~-eEe~aAk~l 249 (274)
T TIGR01658 213 VGKLQCFKWIKERFGHPKVRFCAIGDGW-EECTAAQAM 249 (274)
T ss_pred cchHHHHHHHHHHhCCCCceEEEeCCCh-hHHHHHHhc
Confidence 3456899999999999889999999999 777777653
No 243
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=81.16 E-value=3.2 Score=31.70 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc------e-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI------T-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl------~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
.+|..++++|++++++.+.-.+..-.....++- . |+.+++.+ +.-.+-+.++|++++++.+.||-
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs--------~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQS--------EADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESS--------HHHHHHHHTTT-S--SEEE---G
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECC--------HHHHHHHHHcCCCcceEEEeCcc
Confidence 678889999999999986544433222222221 1 78876643 33355667899999999999997
Q ss_pred chhhH
Q 026634 223 LKDDI 227 (235)
Q Consensus 223 ~~~Di 227 (235)
. -|.
T Consensus 181 K-fd~ 184 (186)
T PF04413_consen 181 K-FDQ 184 (186)
T ss_dssp G-G--
T ss_pred h-hcc
Confidence 7 665
No 244
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=80.79 E-value=2.7 Score=33.52 Aligned_cols=47 Identities=6% Similarity=-0.147 Sum_probs=39.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEe
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALS 189 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~ 189 (235)
...|.+.++++.++++|+.++++|+.....+..+.+.+++. .+.+++
T Consensus 21 ~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~ 68 (249)
T TIGR01485 21 QALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVT 68 (249)
T ss_pred HHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 45588889999999999999999999999999988888876 554554
No 245
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=80.23 E-value=8.1 Score=33.12 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=59.6
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh-cCce----EEEEEecC--------------C--C----------
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGIT----FSPALSRE--------------F--R---------- 193 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~-lgl~----f~~i~~~~--------------~--~---------- 193 (235)
.+....++..+++.|-++.+.||++.......... +|.+ |+.++... + .
T Consensus 200 d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~ 279 (424)
T KOG2469|consen 200 DGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNT 279 (424)
T ss_pred cCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccC
Confidence 34444589999999999999999988877766643 3433 66544321 0 0
Q ss_pred -----CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhH
Q 026634 194 -----PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDI 227 (235)
Q Consensus 194 -----~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di 227 (235)
.+++.+...+.+++.+++...+++++||....||
T Consensus 280 ~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dv 318 (424)
T KOG2469|consen 280 GPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDV 318 (424)
T ss_pred CcchhcccCCcchHHHHHHHhcccccceeecccceeeeE
Confidence 2334456788899999999999999999986665
No 246
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=79.55 E-value=4 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=31.5
Q ss_pred CcccccCHHHHHHHHHhCC-CeEEEEeCCChhHHHHHHh
Q 026634 141 RLQIMPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHN 178 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g-~~i~i~Sn~~~~~~~~~~~ 178 (235)
...++|..-++++.+|+.| ++++++||+..+.+...+.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~ 128 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK 128 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc
Confidence 4578999999999999999 7999999998855554444
No 247
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=75.84 E-value=4.9 Score=33.52 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=33.7
Q ss_pred CcccccCHHHHHHHHHhC----CCeEEEEeCCC---hhH-HHHHHhhcCce
Q 026634 141 RLQIMPGTAQLCGFLDSK----KIRRGLITRNI---KEA-VDLFHNRFGIT 183 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~----g~~i~i~Sn~~---~~~-~~~~~~~lgl~ 183 (235)
...+.|++.++++.|+.+ |+++.++||+. ... ++.+.+.+|+.
T Consensus 14 g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 14 GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred CccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 346799999999999998 99999999986 333 44444778875
No 248
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=74.55 E-value=15 Score=26.46 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhCCCeEEEEeC--CChhHHHHHHhhcCc
Q 026634 147 GTAQLCGFLDSKKIRRGLITR--NIKEAVDLFHNRFGI 182 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn--~~~~~~~~~~~~lgl 182 (235)
+..++++.+.+.|.++.|.|. ...+.++.+...++-
T Consensus 64 ~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A 101 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNA 101 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCC
Confidence 345778888999999999995 456777877777663
No 249
>PLN02580 trehalose-phosphatase
Probab=73.54 E-value=4.3 Score=34.78 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.4
Q ss_pred CCCChHHHHHHHHHcCCCCCc---EEEEcCCchhhHHHHhh
Q 026634 195 YKPDPGPLLHICSTWEVQPNE---VMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~---~v~iGDs~~~Di~~A~~ 232 (235)
+-.|..+++.+++.+|+...+ .++|||+. ||..|-+.
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~-TDedmF~~ 338 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDR-TDEDAFKV 338 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCc-hHHHHHHh
Confidence 446778999999999987663 38999999 99998763
No 250
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=70.61 E-value=8.9 Score=30.20 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEe
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALS 189 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~ 189 (235)
++++ ++++|++++++|+.....+..+++.+++. .+.+++
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~ 61 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIA 61 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEE
Confidence 5666 58899999999999999999999999875 555554
No 251
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=69.63 E-value=9.7 Score=35.19 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=28.7
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR 179 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~ 179 (235)
++..+++..|+.|+.+|+++..+|+.--+.+..+.+.
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkS 694 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKS 694 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehh
Confidence 5778899999999999999999997755554444433
No 252
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=64.98 E-value=19 Score=35.18 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=42.9
Q ss_pred hHHHHHHhhcCceEEEEEecC-----CC-CCCCChHHHHHHHHHcCCCCCcE-EEEcCCchh-hHH
Q 026634 171 EAVDLFHNRFGITFSPALSRE-----FR-PYKPDPGPLLHICSTWEVQPNEV-MMVGDSLKD-DID 228 (235)
Q Consensus 171 ~~~~~~~~~lgl~f~~i~~~~-----~~-~~KP~~~~~~~~~~~l~~~~~~~-v~iGDs~~~-Di~ 228 (235)
..++..+...|+....+++.+ +. ..-.+..++++++.+.|++.+++ ||+||+- + |.+
T Consensus 924 ~elr~~Lr~~gLr~~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSG-ntD~e 988 (1050)
T TIGR02468 924 KELRKLLRIQGLRCHAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESG-DTDYE 988 (1050)
T ss_pred HHHHHHHHhCCCceEEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCC-CCCHH
Confidence 456667777777766666643 22 45557789999999999999999 5599999 7 855
No 253
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=64.83 E-value=26 Score=26.66 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
..+...|...|++++++|.. ..+...+.++|+.+..+
T Consensus 106 ~~l~~~L~~~g~~w~vfTaT--~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 106 AALAQLLAQQGFEWVVFTAT--RQLRNLFRRLGLPPTVL 142 (179)
T ss_pred HHHHHHHHHCCCCEEEEeCC--HHHHHHHHHcCCCceec
Confidence 34457778999999999977 46788899999985444
No 254
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=62.78 E-value=27 Score=23.95 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEe
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~ 189 (235)
+....+++.|+++++++-++.+.++...+..+.+++ +++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~ 42 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYV 42 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEE
Confidence 446788899999999999988668888888777766 444
No 255
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=62.47 E-value=56 Score=26.10 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=38.7
Q ss_pred CCCeEEEEeCCCh---hHHHH----HHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 158 KKIRRGLITRNIK---EAVDL----FHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 158 ~g~~i~i~Sn~~~---~~~~~----~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
.++.+-+++++.. +.++. .++.++-+|-.+++-+ ..-|-|..-++.++..|++ |++|||.+
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN--~a~PGP~~ARE~l~~~~iP---~IvI~D~p 97 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPN--PAAPGPKKAREILKAAGIP---CIVIGDAP 97 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC--CCCCCchHHHHHHHhcCCC---EEEEcCCC
Confidence 3788888887642 22332 2234443344444433 4456667778888888884 99999998
No 256
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=62.02 E-value=15 Score=30.77 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=25.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~ 171 (235)
.++|.+.++++.++++|+.+.+.||+...
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 45788999999999999999999999653
No 257
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=61.55 E-value=1e+02 Score=27.61 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=19.3
Q ss_pred HHHhCCCeEEEEeCCChhHHHHHHhh-cCce
Q 026634 154 FLDSKKIRRGLITRNIKEAVDLFHNR-FGIT 183 (235)
Q Consensus 154 ~l~~~g~~i~i~Sn~~~~~~~~~~~~-lgl~ 183 (235)
-++..| +.+++|..++-.++.+++. +|.+
T Consensus 141 v~~~~~-~~~vv~~~PrvMve~Flkeyl~~d 170 (525)
T PLN02588 141 VLKRGG-KRVGVSDLPQVMIDVFLRDYLEIE 170 (525)
T ss_pred HHhhcC-cEEEEecCCHHHHHHHHHHhcCcc
Confidence 334444 4556666999999998854 5754
No 258
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=61.00 E-value=76 Score=24.57 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=56.5
Q ss_pred cCHHHHHHH-HHhCCCeEEEEeCCCh----hHHHHHHhhcCceEEEEEecCC-C----CCCCChHHHHHHHHHcCCCCCc
Q 026634 146 PGTAQLCGF-LDSKKIRRGLITRNIK----EAVDLFHNRFGITFSPALSREF-R----PYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 146 ~~~~~~l~~-l~~~g~~i~i~Sn~~~----~~~~~~~~~lgl~f~~i~~~~~-~----~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
..+.++.+. .++...-.+++|+..+ ..+..+++.-|+.|+.++-... . ..+=|...+..+++.+. ..++
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~e 135 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLEFDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEE 135 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCCccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCE
Confidence 344444433 3344555677887653 4466677777888998765322 1 22223456777788777 8899
Q ss_pred EEEEcCCchhhHHHHhhhh
Q 026634 216 VMMVGDSLKDDIDVVFNTF 234 (235)
Q Consensus 216 ~v~iGDs~~~Di~~A~~~~ 234 (235)
+-+.+|.. .-+++-+.-|
T Consensus 136 I~IYeDR~-~hvk~Fr~Ff 153 (197)
T PF10307_consen 136 IRIYEDRP-KHVKGFRDFF 153 (197)
T ss_pred EEEEcCCH-HHHHHHHHHH
Confidence 99999999 8888766544
No 259
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=60.98 E-value=21 Score=27.89 Aligned_cols=39 Identities=5% Similarity=-0.089 Sum_probs=28.3
Q ss_pred ccccC-HHHHHHHHHhCCCeEEEEeCCCh--hHHHHHHhhcC
Q 026634 143 QIMPG-TAQLCGFLDSKKIRRGLITRNIK--EAVDLFHNRFG 181 (235)
Q Consensus 143 ~~~~~-~~~~l~~l~~~g~~i~i~Sn~~~--~~~~~~~~~lg 181 (235)
.+.++ +.++++.+++.|+.+++.||+.. +....++....
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D 91 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCD 91 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcC
Confidence 34566 57999999999999999999854 34444544433
No 260
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=60.18 E-value=28 Score=33.02 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=37.5
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+++.++.+..++.|.+.+.+++.+|+.+.-.+-++.+.+|+-
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 3467899999999999999999999999888888888887764
No 261
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=58.98 E-value=70 Score=26.52 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=39.4
Q ss_pred HHHHHHHhCCC-------------eEEEEeCCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCc
Q 026634 150 QLCGFLDSKKI-------------RRGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 150 ~~l~~l~~~g~-------------~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
..+++|+++|+ .+.+-+.+-...+...++..|+. .|. -.|.-.-.+..++++.-...+
T Consensus 44 ~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDa--------TCP~V~k~~~~v~~~~~~Gy~ 115 (298)
T PRK01045 44 YVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDA--------TCPLVTKVHKEVARMSREGYE 115 (298)
T ss_pred HHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeC--------CCccchHHHHHHHHHHhCCCE
Confidence 44555666655 34444445556666667777766 443 344445556666666666677
Q ss_pred EEEEcCCc
Q 026634 216 VMMVGDSL 223 (235)
Q Consensus 216 ~v~iGDs~ 223 (235)
++++||.-
T Consensus 116 vvi~G~~~ 123 (298)
T PRK01045 116 IILIGHKG 123 (298)
T ss_pred EEEEeCCC
Confidence 88888765
No 262
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.74 E-value=92 Score=27.05 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=34.1
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHcC-CCCCcEEEEcCCchhhHHHH
Q 026634 184 FSPALSREFRPYKPDPGPLLHICSTWE-VQPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 184 f~~i~~~~~~~~KP~~~~~~~~~~~l~-~~~~~~v~iGDs~~~Di~~A 230 (235)
||.|+..-.++-|-....|++..+--+ +.|+++++|=|.- ..-.+.
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas-iGQaae 230 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS-IGQAAE 230 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc-ccHhHH
Confidence 666666555677777788888777555 5899999999987 655544
No 263
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=58.31 E-value=55 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 198 DPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
|...+.++++.+ +..+.|.||||-..|.+.-..
T Consensus 51 K~~~i~~i~~~f--P~~kfiLIGDsgq~DpeiY~~ 83 (100)
T PF09949_consen 51 KRDNIERILRDF--PERKFILIGDSGQHDPEIYAE 83 (100)
T ss_pred HHHHHHHHHHHC--CCCcEEEEeeCCCcCHHHHHH
Confidence 444556665554 456899999998888776543
No 264
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=57.56 E-value=23 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=27.0
Q ss_pred eEEEEEecCCC--CCCCChHHHHHHHHHc----CCCCCcEEEEcCCc
Q 026634 183 TFSPALSREFR--PYKPDPGPLLHICSTW----EVQPNEVMMVGDSL 223 (235)
Q Consensus 183 ~f~~i~~~~~~--~~KP~~~~~~~~~~~l----~~~~~~~v~iGDs~ 223 (235)
+|.+.=+|.++ .--.|..+.....+.+ ++.|++|++|||+.
T Consensus 333 pfCAFNGGsDVwVDIGdKs~GV~~lQ~y~~~~~~i~~~~tLHVGDQF 379 (408)
T PF06437_consen 333 PFCAFNGGSDVWVDIGDKSLGVRALQKYFDPEGGIKPSETLHVGDQF 379 (408)
T ss_pred ceeeecCCcceEEEcCCcHHhHHHHHHHHHhccCCCccceeeehhhh
Confidence 36555555443 1223345666666666 89999999999987
No 265
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=56.98 E-value=36 Score=28.10 Aligned_cols=87 Identities=16% Similarity=0.048 Sum_probs=51.8
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhH-HHHHHhhcCce------------------------------EEEEEecCC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEA-VDLFHNRFGIT------------------------------FSPALSREF 192 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~-~~~~~~~lgl~------------------------------f~~i~~~~~ 192 (235)
=-+|+..+-+.|+..|.++.++|...... +...++.++.. |+.+++.|.
T Consensus 61 GP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lIaIER 140 (291)
T PF14336_consen 61 GPPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGLQGVDKVEIPPFFPDDFAQAFLEADGLLKEPRPDLLIAIER 140 (291)
T ss_pred ChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhhCcccccccccccccchhhhHHHHhhccccCCCCEEEEeCC
Confidence 35788999999999999999999754222 22332222211 566665331
Q ss_pred ------C-----CC---CCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 193 ------R-----PY---KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 193 ------~-----~~---KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
+ .+ ++....+..++.+.....-.++.|||+- |.+-|++
T Consensus 141 pGra~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~~gi~tigIGDGG-NEiGMG~ 192 (291)
T PF14336_consen 141 PGRAADGNYYNMRGEDISHLVAPLDDLFLAAKEPGIPTIGIGDGG-NEIGMGN 192 (291)
T ss_pred cccCCCCCEecCcCCcCccccccHHHHHHHhhcCCCCEEEECCCc-hhcccCh
Confidence 1 01 1112234444444333455699999999 9988875
No 266
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=56.55 E-value=7.2 Score=32.94 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=16.2
Q ss_pred CCCceEEEEecCCCccCCcc
Q 026634 65 KTRLRGVVFDMDGTLTVPVI 84 (235)
Q Consensus 65 ~~~~k~vifDlDGTL~d~~~ 84 (235)
...++++-||||.||+.-..
T Consensus 9 l~~i~~~GFDmDyTLa~Y~~ 28 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYKS 28 (343)
T ss_pred cccCCEEEECccccccccCh
Confidence 34599999999999996543
No 267
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=56.20 E-value=17 Score=25.31 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=25.5
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+++.+.++.++++|.+++.+|+++...+..
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 34678899999999999999999886554443
No 268
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=55.65 E-value=22 Score=26.06 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=25.7
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChh-HHHHHHhh
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKE-AVDLFHNR 179 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~-~~~~~~~~ 179 (235)
.+.+.++++.+++.|+++.+.||+..+ ..+.+++.
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~ 109 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQH 109 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHh
Confidence 356889999999999999999987543 23344444
No 269
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=55.43 E-value=13 Score=25.97 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=26.1
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 45788999999999999999999876554444
No 270
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=55.24 E-value=53 Score=31.85 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=33.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
++.+.....++.|.+.+++.+.+|+.+-...-.+.+..|+-
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi 745 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMI 745 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchheeeehhhccccc
Confidence 57889999999999999999999988766666666666643
No 271
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=55.22 E-value=27 Score=23.89 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=34.6
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPAL 188 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~ 188 (235)
+.+.++...+++.|+.++.+|....+.+....+..++.|..+.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEE
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhcccccccc
Confidence 4456777888888999999999988888888888887655543
No 272
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=55.13 E-value=1e+02 Score=26.49 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 198 DPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
|...|+++.+++|- .-.-++|||+. ..-.+|+++
T Consensus 410 KescFerI~~RFg~-K~~yvvIgdG~-eee~aAK~l 443 (468)
T KOG3107|consen 410 KESCFERIQSRFGR-KVVYVVIGDGV-EEEQAAKAL 443 (468)
T ss_pred HHHHHHHHHHHhCC-ceEEEEecCcH-HHHHHHHhh
Confidence 44799999999997 66778899998 666666653
No 273
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=54.78 E-value=9 Score=31.87 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHc--------C-CCCCcEEEEcCCchhhHHHHh
Q 026634 194 PYKPDPGPLLHICSTW--------E-VQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l--------~-~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.+||.+-.|+.+...+ + -++..+.+|||++..|+.+|+
T Consensus 269 ~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~ 315 (389)
T KOG1618|consen 269 LGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGAN 315 (389)
T ss_pred cCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccc
Confidence 5899888777764432 2 367889999999999999885
No 274
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=54.60 E-value=1e+02 Score=23.97 Aligned_cols=72 Identities=10% Similarity=-0.027 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCChh-HHHHHHhh-cCceEEEEEecCCCCCCCChHHHHHHHHHcCCCC--CcEEEEcCCc
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKE-AVDLFHNR-FGITFSPALSREFRPYKPDPGPLLHICSTWEVQP--NEVMMVGDSL 223 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~-~~~~~~~~-lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~--~~~v~iGDs~ 223 (235)
..+++.|++. ++++|++|.-.. .-...+.+ .|.....+.++... --+..+...+++++.... -+.++|+..-
T Consensus 31 e~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C--H~da~m~~~ai~~l~~~~~~~Dll~iEs~G 106 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC--HLDASMNLEAIEELVLDFPDLDLLFIESVG 106 (202)
T ss_pred HHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc--CCcHHHHHHHHHHHhhcCCcCCEEEEecCc
Confidence 3557778777 999999986433 22334444 77665555554222 255678888888887643 3788887643
No 275
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=54.60 E-value=94 Score=25.66 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=30.5
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCC---ChhHHHHHHhhcCce-EEEEEe
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRN---IKEAVDLFHNRFGIT-FSPALS 189 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~---~~~~~~~~~~~lgl~-f~~i~~ 189 (235)
-.+.|-+.+++..|.+.|+ + -++++ ..+.-..+.+.+|+. +....|
T Consensus 45 ~~plp~v~~i~~~l~~egi-v-~~~~g~v~~TekG~E~~e~~gi~~~~~~~C 94 (354)
T COG1568 45 DLPLPLVASILEILEDEGI-V-KIEEGGVELTEKGEELAEELGIKKKYDYTC 94 (354)
T ss_pred cCCchHHHHHHHHHHhcCc-E-EEecCcEeehhhhHHHHHHhCCCccccccc
Confidence 3578999999999999985 3 33433 223345667788988 444444
No 276
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=53.30 E-value=76 Score=22.22 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEE
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP 186 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~ 186 (235)
.+.++.+.+++.|+.++.+|......+...++..++.|..
T Consensus 45 ~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 84 (140)
T cd03017 45 DFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPL 84 (140)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 3445566677778888888877777777777888876553
No 277
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=52.53 E-value=1e+02 Score=25.27 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=31.7
Q ss_pred eCCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 166 TRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 166 Sn~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
+.+-...+...++..|+. .|. -.|.-.-.+..++++.-...++++|||..
T Consensus 73 AHGv~~~~~~~~~~~gl~viDa--------TCP~V~kv~~~v~~~~~~Gy~iiiiG~~~ 123 (280)
T TIGR00216 73 AHGVPPEVREELEKKGLEVIDA--------TCPLVTKVHNAVKKYAKEGYHVILIGKKN 123 (280)
T ss_pred CCCCCHHHHHHHHHCCCeEEeC--------CCcccHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 345555566666777765 444 34554556666666666677888888865
No 278
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=52.25 E-value=68 Score=23.82 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
..+.+..+++.|..+.-+|-.+......+.++.|+.|.-.
T Consensus 53 Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LL 92 (157)
T COG1225 53 FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLL 92 (157)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceee
Confidence 3566777888899999999988888999999999886654
No 279
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=51.68 E-value=30 Score=27.19 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcC-ce-EEEEEec
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG-IT-FSPALSR 190 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lg-l~-f~~i~~~ 190 (235)
+.++|..|++. +.++|||+++...+..-+.... +. |+.+++.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~e 44 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPE 44 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcccchHhhCCeeecC
Confidence 46889999986 9999999998765554442111 12 7777764
No 280
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.42 E-value=28 Score=27.51 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=41.9
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHH---HHHHhhcCce------EEEEEecCCCCCCCChHHHHHHHHHcC-CCCCc
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAV---DLFHNRFGIT------FSPALSREFRPYKPDPGPLLHICSTWE-VQPNE 215 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~---~~~~~~lgl~------f~~i~~~~~~~~KP~~~~~~~~~~~l~-~~~~~ 215 (235)
|.-...|..+++ +...|.+-+..+.. ...+...|+. |-.++....+++ .+...+++.+. ..+.+
T Consensus 137 pre~aaLa~~rE--yseti~~rs~d~~~~~~~~~L~e~glt~v~garf~~v~~as~gKg----~Aa~~ll~~y~rl~~~r 210 (274)
T COG3769 137 PREQAALAMLRE--YSETIIWRSSDERMAQFTARLNERGLTFVHGARFWHVLDASAGKG----QAANWLLETYRRLGGAR 210 (274)
T ss_pred ChHHhHHHHHHH--hhhheeecccchHHHHHHHHHHhcCceEEeccceEEEeccccCcc----HHHHHHHHHHHhcCcee
Confidence 333444555554 45556665444432 3344555654 444444433333 34455555443 23344
Q ss_pred -EEEEcCCchhhHHHHh
Q 026634 216 -VMMVGDSLKDDIDVVF 231 (235)
Q Consensus 216 -~v~iGDs~~~Di~~A~ 231 (235)
++.+||++ ||+.+-.
T Consensus 211 ~t~~~GDg~-nD~Pl~e 226 (274)
T COG3769 211 TTLGLGDGP-NDAPLLE 226 (274)
T ss_pred EEEecCCCC-CcccHHH
Confidence 89999999 9987643
No 281
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=50.86 E-value=70 Score=26.87 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=48.2
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHH--------------------HHhhcCceEEEEEecCCCCCCCChHHHHH
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL--------------------FHNRFGITFSPALSREFRPYKPDPGPLLH 204 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~--------------------~~~~lgl~f~~i~~~~~~~~KP~~~~~~~ 204 (235)
.|-+..+.+.|+++|++++|+|-+....... +.+.++ ...+ .++......+.
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~--~~V~------V~~dR~~~~~~ 122 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP--VPVI------VGPDRVAAARA 122 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC--CcEE------EeCcHHHHHHH
Confidence 5677889999999999999999765432211 111111 1112 23444467788
Q ss_pred HHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 205 ICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
++++++ -+++..+|+. .+...++
T Consensus 123 ~~~~~~---~dviilDDGf-Qh~~L~r 145 (326)
T PF02606_consen 123 ALKEFP---ADVIILDDGF-QHRRLKR 145 (326)
T ss_pred HHHHCC---CCEEEEcCCc-ccccccC
Confidence 888776 5689999998 7665443
No 282
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=50.57 E-value=34 Score=24.32 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.2
Q ss_pred CceEEEEecCCCcc
Q 026634 67 RLRGVVFDMDGTLT 80 (235)
Q Consensus 67 ~~k~vifDlDGTL~ 80 (235)
.+..|+||+.+||-
T Consensus 44 ~P~iV~FDmK~Tld 57 (128)
T PRK13717 44 APVTAAFNMKQTVD 57 (128)
T ss_pred CCeEEEEehHHHHH
Confidence 36899999999994
No 283
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=50.50 E-value=36 Score=25.71 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=24.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChh
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~ 171 (235)
.+.+++.++++.+++.|+.+.+.||+...
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 35567889999999999999999999654
No 284
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=50.19 E-value=10 Score=23.25 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 202 LLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
++..++++|+ .+++||.. .|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr~-~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRL-WDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HH-HHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChH-HHHHHHH
Confidence 4677888887 48999999 9999864
No 285
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=49.57 E-value=22 Score=24.78 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=25.1
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
-.+++.+.++.++++|.+++.+|+.......
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 4578889999999999999999987655433
No 286
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=49.30 E-value=18 Score=28.71 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=24.9
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChh
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~ 171 (235)
+.++..++++.+++.|+++.+-||+...
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 4578999999999999999999999754
No 287
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=49.24 E-value=77 Score=25.39 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=5.8
Q ss_pred CCCCChHHHHH
Q 026634 194 PYKPDPGPLLH 204 (235)
Q Consensus 194 ~~KP~~~~~~~ 204 (235)
.+.|+.+.+..
T Consensus 165 lG~PkQE~~~~ 175 (243)
T PRK03692 165 MGSPKQEIFMR 175 (243)
T ss_pred CCCcHHHHHHH
Confidence 35566555543
No 288
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=48.96 E-value=44 Score=30.50 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=39.9
Q ss_pred EEEEeCCChhHHHHHHhhcCce---EEEEEecCCCCCCCChHHHHHH----------HHHcCCCCCcEEEEcCCchhhHH
Q 026634 162 RGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHI----------CSTWEVQPNEVMMVGDSLKDDID 228 (235)
Q Consensus 162 i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~----------~~~l~~~~~~~v~iGDs~~~Di~ 228 (235)
++--|-+.+.+.+...+.+|-+ +|.-+. ..-|-|...+++ +..+|...++++++|||...++.
T Consensus 408 VAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA----PEaPFPRaleEv~fAYcW~inn~allG~TgEriv~aGDSAGgNL~ 483 (880)
T KOG4388|consen 408 VAQSSKSHEPYLRSWAQALGCPIISVDYSLA----PEAPFPRALEEVFFAYCWAINNCALLGSTGERIVLAGDSAGGNLC 483 (880)
T ss_pred eeeccccccHHHHHHHHHhCCCeEEeeeccC----CCCCCCcHHHHHHHHHHHHhcCHHHhCcccceEEEeccCCCccee
Confidence 3334456677788888888865 233222 333444443333 45679999999999999854443
No 289
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=48.17 E-value=17 Score=22.79 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCCCcEEEEcCC
Q 026634 202 LLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~v~iGDs 222 (235)
+.+++++.|+.+.++|.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 467788889999999999984
No 290
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=47.84 E-value=91 Score=21.53 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCeEEEEeCCChh--------HHHHHHhhcCceEEEE-EecCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 150 QLCGFLDSKKIRRGLITRNIKE--------AVDLFHNRFGITFSPA-LSREFRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~--------~~~~~~~~lgl~f~~i-~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
+=++.|++.|++.+|.--.+.+ ......+.+|+.|..+ +. .+.+.++-+..+.+.+.-.+..+++.
T Consensus 18 ~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~----~~~~~~~~v~~f~~~l~~~~~Pvl~h 92 (110)
T PF04273_consen 18 EDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVD----GGAITEEDVEAFADALESLPKPVLAH 92 (110)
T ss_dssp HHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--------TTT--HHHHHHHHHHHHTTTTSEEEE
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecC----CCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4468889999998876532211 2456788999984432 22 23455566666666665545566655
No 291
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=47.76 E-value=25 Score=34.71 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=33.2
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
++.+|+.+.++.|+++|+|+.++|+.-.+.+..+.-..++
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~L 690 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRL 690 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcC
Confidence 6789999999999999999999998877776666544443
No 292
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=46.72 E-value=55 Score=32.14 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=26.8
Q ss_pred CCeEEEEeCCChhHHHHHHhhcCce---EEEEEe
Q 026634 159 KIRRGLITRNIKEAVDLFHNRFGIT---FSPALS 189 (235)
Q Consensus 159 g~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~ 189 (235)
.+-++++|+.....+..+++..|++ ||.++|
T Consensus 804 ~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~ 837 (1050)
T TIGR02468 804 SSGFILSTSMTISEIQSFLKSGGLNPTDFDALIC 837 (1050)
T ss_pred ceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEe
Confidence 3678899999999999999999986 888886
No 293
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=46.36 E-value=18 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHcCCC---CCcEEEEcCCchhhHHHHhh
Q 026634 195 YKPDPGPLLHICSTWEVQ---PNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~---~~~~v~iGDs~~~Di~~A~~ 232 (235)
...|..+++.++++++.. ++-++++||+. +|-.|-+.
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~-tDE~~f~~ 202 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDR-TDEDAFRA 202 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESSH-HHHHHHHT
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCCC-CCHHHHHH
Confidence 334678999999999876 88999999999 99877553
No 294
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=45.72 E-value=25 Score=26.34 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=26.1
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 45678899999999999999999876655444
No 295
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=45.37 E-value=45 Score=23.08 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=26.6
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
-.+++.+.++.++++|.+++.+|+.. + ........|.
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~-~-l~~~~~~~~~ 91 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG-K-LLEMAREHGV 91 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc-h-HHHHHHHcCC
Confidence 34678889999999999999999654 3 4444454454
No 296
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=45.25 E-value=1.4e+02 Score=23.66 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=37.7
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFR 193 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~ 193 (235)
-.+.+.++++.|++.|+++.++.+.+...++. ....|.++-.+.++...
T Consensus 109 ~~~~l~~~v~~L~~~GirVSLFiD~d~~qi~a-a~~~gA~~IELhTG~Ya 157 (243)
T COG0854 109 QLDKLRDAVRRLKNAGIRVSLFIDPDPEQIEA-AAEVGAPRIELHTGPYA 157 (243)
T ss_pred hhhhHHHHHHHHHhCCCeEEEEeCCCHHHHHH-HHHhCCCEEEEeccccc
Confidence 35677899999999999999999977665554 46778876666776554
No 297
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=44.97 E-value=1.1e+02 Score=24.15 Aligned_cols=71 Identities=10% Similarity=0.146 Sum_probs=49.1
Q ss_pred ccccCHH-HHHHHHHhCCCeEEEEeCCChh-----HHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCC
Q 026634 143 QIMPGTA-QLCGFLDSKKIRRGLITRNIKE-----AVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPN 214 (235)
Q Consensus 143 ~~~~~~~-~~l~~l~~~g~~i~i~Sn~~~~-----~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~ 214 (235)
.+.|++. ++...+++.|++.+|+-..... .++..++.+|+. |...+|+-...++ ..+...++.+|-+.=
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~---p~i~~F~~~fGkP~~ 135 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGN---PQIDEFAEYFGKPKV 135 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCC---hhHHHHHHHhCCceE
Confidence 4677776 7778888899999998877666 788888999977 5555554322233 456677777886544
Q ss_pred cE
Q 026634 215 EV 216 (235)
Q Consensus 215 ~~ 216 (235)
++
T Consensus 136 ei 137 (217)
T PF02593_consen 136 EI 137 (217)
T ss_pred EE
Confidence 44
No 298
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=44.74 E-value=13 Score=31.92 Aligned_cols=19 Identities=37% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCceEEEEecCCCccCCcc
Q 026634 66 TRLRGVVFDMDGTLTVPVI 84 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~ 84 (235)
..+.+|.||||+||.....
T Consensus 25 ~~i~~~GfdmDyTL~~Y~~ 43 (424)
T KOG2469|consen 25 ENIGIVGFDMDYTLARYNL 43 (424)
T ss_pred hcCcEEeeccccchhhhcc
Confidence 4589999999999996443
No 299
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=44.61 E-value=34 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=25.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLF 176 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~ 176 (235)
...+..+.++.++++|.+++++|+.....+...
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 346778889999999999999997765544433
No 300
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=44.39 E-value=25 Score=22.03 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCCcEEEEcCC
Q 026634 201 PLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~iGDs 222 (235)
++..++++.|+.+..+|.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 44 GVEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred CHHHHHHHcCCCCCCEEEEccE
Confidence 3577888899999999999984
No 301
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.10 E-value=1.1e+02 Score=22.91 Aligned_cols=34 Identities=15% Similarity=-0.012 Sum_probs=18.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHH
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A 230 (235)
.+.|+.+.+........ ...-++-||.+. |+.++
T Consensus 107 lG~PkQE~~~~~~~~~l-~~~v~~~vG~~~--d~~aG 140 (171)
T cd06533 107 LGAPKQELWIARHKDRL-PVPVAIGVGGSF--DFLAG 140 (171)
T ss_pred CCCCHHHHHHHHHHHHC-CCCEEEEeceee--EeccC
Confidence 47777776665544433 333355567766 54443
No 302
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=44.04 E-value=1.6e+02 Score=24.22 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=31.0
Q ss_pred eCCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 166 TRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 166 Sn~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
+.+-...+...++..|+. .|. -.|.-.-....++++.-...+++.|||..
T Consensus 76 AHGv~~~~~~~~~~~g~~viDa--------TCP~V~k~~~~v~~~~~~Gy~iviiG~~~ 126 (281)
T PRK12360 76 SHGVSKKVYKDLKDKGLEIIDA--------TCPFVKKIQNIVEEYYNKGYSIIIVGDKN 126 (281)
T ss_pred CCCCCHHHHHHHHHCCCeEEeC--------CCccchHHHHHHHHHHhCCCEEEEEcCCC
Confidence 345555566666777765 443 24444555666666666677788888864
No 303
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=43.76 E-value=44 Score=17.71 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=23.0
Q ss_pred eEEEEecCCCccCCcccHHHHHHHHcCCch
Q 026634 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDE 98 (235)
Q Consensus 69 k~vifDlDGTL~d~~~~~~~~~~~~lg~~~ 98 (235)
++.+.|++|..+.......++-+.+ |.+.
T Consensus 2 ~V~~yd~~~~~i~~F~Si~eAa~~l-~i~~ 30 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFDSIREAARYL-GISH 30 (37)
T ss_pred eEEEEECCCCeEEEEcCHHHHHHHh-CCCH
Confidence 5789999999987777788877777 6554
No 304
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=43.72 E-value=31 Score=24.07 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=23.9
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
.+.+.++++.++++|.+++++|++......
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 356788899999999999999987655443
No 305
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=42.76 E-value=52 Score=27.75 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=29.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCC---hhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNI---KEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~---~~~~~~~~~~lgl~ 183 (235)
.+.++..++++.+++.|+.+.+.||+. .+.++ .+...|+.
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~-~L~~~g~~ 107 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGVGLTEARLD-ALADAGLD 107 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHH-HHHhCCCC
Confidence 457889999999999999999999985 23333 34445654
No 306
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=42.75 E-value=24 Score=20.01 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhh
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNR 179 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~ 179 (235)
.++.+.|++.|++.+=+|...+...+..+..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 4778889999999999998888877766654
No 307
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=42.59 E-value=1.8e+02 Score=25.49 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=34.7
Q ss_pred CeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEc
Q 026634 160 IRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 160 ~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iG 220 (235)
-+|+|+|+.....+.-++..+.-. ++..+-.-.+.+.-.+.-+..+++..+-..-+++.|+
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~ 199 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVA 199 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEe
Confidence 479999988777766666544433 2332222223444445566666666655334677773
No 308
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=42.47 E-value=75 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=31.3
Q ss_pred HHHHHHHHhCC--CeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhh
Q 026634 149 AQLCGFLDSKK--IRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDD 226 (235)
Q Consensus 149 ~~~l~~l~~~g--~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~D 226 (235)
...-++|++.| ..++++|+.....++.-.+-. +-++++++++ +|+.|++|.|+. .|
T Consensus 54 vkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~-------------------~qld~vl~~~--~~~~~i~VsDGa-eD 111 (344)
T PF04123_consen 54 VKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIA-------------------EQLDEVLSKF--DPDSAIVVSDGA-ED 111 (344)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHH-------------------HHHHHHHHhC--CCCEEEEEecCh-hh
Confidence 34456677666 567888877654433221100 1234444444 466788888877 66
No 309
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=41.83 E-value=95 Score=25.08 Aligned_cols=70 Identities=10% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEE--EEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEc
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS--PALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~--~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iG 220 (235)
+.++++...+.|.+++++=+.+ ..++...+.+.-.+- .+++..++..+|..+ +.+++...-...++++||
T Consensus 97 ~~~Ll~~a~~~~~~vfllGgkp-~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~--~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 97 VEALLKRAAEEGKRVFLLGGKP-GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE--EAIVERIAASGPDILLVG 168 (253)
T ss_pred HHHHHHHhCccCceEEEecCCH-HHHHHHHHHHHHHCCCceEEEecCCCCChhhH--HHHHHHHHhcCCCEEEEe
Confidence 3455555555566666665443 333333333322211 233333444444433 344444444444455554
No 310
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=41.74 E-value=1.2e+02 Score=21.14 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc-CceEEEE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GITFSPA 187 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l-gl~f~~i 187 (235)
+.+.++.+.+++.|+.++.+|..+...+....+.+ +..|..+
T Consensus 43 ~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l 85 (140)
T cd02971 43 CAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLL 85 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEE
Confidence 44556667777778999999887777777777777 5556544
No 311
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=41.37 E-value=51 Score=28.10 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=29.9
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCCh---hHHHHHHhhcCce
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---EAVDLFHNRFGIT 183 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~---~~~~~~~~~lgl~ 183 (235)
..+.+++.++++.+++.|+.+.+.||+.. +.+ ..+...|+.
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~-~~L~~~g~~ 116 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGVGLTEARL-AALKDAGLD 116 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHH-HHHHHcCCC
Confidence 34578899999999999999999999852 333 334555654
No 312
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=40.38 E-value=1.3e+02 Score=21.03 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=11.5
Q ss_pred ceEEEEecCCCcc
Q 026634 68 LRGVVFDMDGTLT 80 (235)
Q Consensus 68 ~k~vifDlDGTL~ 80 (235)
+..|.||+.+|+-
T Consensus 32 P~iV~fdmk~tld 44 (112)
T TIGR02744 32 PVTVAFDMKQTLD 44 (112)
T ss_pred CeEEEEecHHHHH
Confidence 6789999999995
No 313
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.96 E-value=88 Score=26.92 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=51.6
Q ss_pred HHHHHHHHhCC-Ce-EEEEeCCCh--hHHHHHHhhcCce-EEE--EEecCCCCCCCChH-------HHHHHHHHcCCCCC
Q 026634 149 AQLCGFLDSKK-IR-RGLITRNIK--EAVDLFHNRFGIT-FSP--ALSREFRPYKPDPG-------PLLHICSTWEVQPN 214 (235)
Q Consensus 149 ~~~l~~l~~~g-~~-i~i~Sn~~~--~~~~~~~~~lgl~-f~~--i~~~~~~~~KP~~~-------~~~~~~~~l~~~~~ 214 (235)
..+++.+++.+ +. ++++|+-.. ++...+++.+++. .|. -+.. .+.+-.+ .+..+++ ...|+
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~---~~~tl~~~t~~~i~~~~~vl~--~~kPD 94 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMK---PGQTLGEITGNIIEGLSKVLE--EEKPD 94 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccc---cCCCHHHHHHHHHHHHHHHHH--hhCCC
Confidence 35677777775 44 667787776 8899999999987 332 2221 1111122 2333333 45799
Q ss_pred cEEEEcCCchhhHHHHhhhh
Q 026634 215 EVMMVGDSLKDDIDVVFNTF 234 (235)
Q Consensus 215 ~~v~iGDs~~~Di~~A~~~~ 234 (235)
=+++-||.. +=+.+|.++|
T Consensus 95 ~VlVhGDT~-t~lA~alaa~ 113 (383)
T COG0381 95 LVLVHGDTN-TTLAGALAAF 113 (383)
T ss_pred EEEEeCCcc-hHHHHHHHHH
Confidence 999999999 8888777665
No 314
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=39.79 E-value=71 Score=18.16 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred ceEEEEecCCCccCCcccHHHHHHHHcCCchH
Q 026634 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY 99 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~~~~~~~~~~lg~~~~ 99 (235)
..+.++|.+|+++.......++-+.. |....
T Consensus 2 k~V~~~d~~~~~i~~f~S~~eAa~~l-g~~~~ 32 (53)
T smart00497 2 KPVYVYDLDGNLIGEFSSIREAAKYL-GISHS 32 (53)
T ss_pred ccEEEEeCCCCEEEEecCHHHHHHHh-CCCHH
Confidence 35788999999987666777777776 66543
No 315
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=39.73 E-value=75 Score=22.57 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=28.5
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP 186 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~ 186 (235)
+.+.++.+.+++.|+.++.+|......+....+..++.|..
T Consensus 49 ~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~ 89 (149)
T cd03018 49 CALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPL 89 (149)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceE
Confidence 34455666777778888888877766677777777766543
No 316
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=39.60 E-value=31 Score=25.81 Aligned_cols=30 Identities=7% Similarity=-0.039 Sum_probs=25.1
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEA 172 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~ 172 (235)
.-.+++.++++.++++|.+++.+|+.....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 446789999999999999999999875443
No 317
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=39.38 E-value=1.3e+02 Score=22.81 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=17.5
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHH
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVV 230 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A 230 (235)
.+-|+.+.+..-... .....-++-||.+. |+.++
T Consensus 108 lG~PkQE~~~~~~~~-~~~~~v~~gvGg~f--d~~aG 141 (177)
T TIGR00696 108 LGCPKQEIWMRNHRH-LKPDAVMIGVGGSF--DVFSG 141 (177)
T ss_pred cCCcHhHHHHHHhHH-hCCCcEEEEeceee--eeccc
Confidence 477877766543321 11222345577776 55444
No 318
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=39.34 E-value=67 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=25.0
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+++.++.+.|.+.|++++ .|.+. ...++..|+.
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GT----Ak~L~e~GI~ 43 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGT----AKFLKEAGIP 43 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHH----HHHHHHcCCe
Confidence 6788999999999999885 55442 3445667775
No 319
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=39.17 E-value=1.3e+02 Score=24.54 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHH-hhcCceEEEEEecCC--------CCCCCChHHHHHHHHHcCCC-------
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFH-NRFGITFSPALSREF--------RPYKPDPGPLLHICSTWEVQ------- 212 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~-~~lgl~f~~i~~~~~--------~~~KP~~~~~~~~~~~l~~~------- 212 (235)
.++.+.+.++|+.+..+.-.. .+-+.+. +.- .+++++. ..++-....++..++.+|++
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~-~~Pd~VFt~D~-----~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~ 114 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIE-GLPDQVFTRDP-----GLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEA 114 (267)
T ss_pred HHHHHHHHHCCCEEEEcCccc-CCCcceEeccc-----eeEecccEEEeccCChhhccCHHHHHHHHHHcCCcccccccC
Confidence 466777888899888887111 1001000 000 1112211 12344456788888888764
Q ss_pred ------------CCcEEEEcCCchhhHHHHhhh
Q 026634 213 ------------PNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 213 ------------~~~~v~iGDs~~~Di~~A~~~ 233 (235)
-.++++||.+..+|.+++..+
T Consensus 115 ~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~l 147 (267)
T COG1834 115 GVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQL 147 (267)
T ss_pred CCccccccEEEeCCcEEEEEeccccchHHHHHH
Confidence 157889999998999888754
No 320
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=39.12 E-value=1.1e+02 Score=24.04 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=36.8
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEec
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSR 190 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~ 190 (235)
++...+..|.+++..+++||.++.+.+....+++|..|..+.+.
T Consensus 94 ~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~ 137 (211)
T PF05988_consen 94 HIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSY 137 (211)
T ss_pred hhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcC
Confidence 44466788899999999999999999999999999886665543
No 321
>PRK13937 phosphoheptose isomerase; Provisional
Probab=38.49 E-value=41 Score=25.57 Aligned_cols=33 Identities=6% Similarity=-0.158 Sum_probs=26.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
.-.+.+.+.++.++++|.+++.+|+.....+..
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGGKMKE 149 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 346788999999999999999999876554443
No 322
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.46 E-value=1.7e+02 Score=21.87 Aligned_cols=35 Identities=11% Similarity=0.018 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.+.|+.+.+..-....- ...-++.+|... |+.+++
T Consensus 109 lG~PkQE~~~~~~~~~l-~~~v~i~vG~~~--d~~aG~ 143 (172)
T PF03808_consen 109 LGAPKQERWIARHRQRL-PAGVIIGVGGAF--DFLAGK 143 (172)
T ss_pred CCCCHHHHHHHHHHHHC-CCCEEEEECchh--hhhccC
Confidence 36777776655444322 222567777776 665543
No 323
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=37.25 E-value=89 Score=21.11 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=32.9
Q ss_pred CCcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc----Cce
Q 026634 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF----GIT 183 (235)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l----gl~ 183 (235)
......=|..+.++.++.-.-+++|+..+.+...+.-++.+ +++
T Consensus 16 kTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ip 63 (100)
T COG1911 16 KTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIP 63 (100)
T ss_pred hcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCc
Confidence 34466778899999999988888777766666676666655 666
No 324
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=36.59 E-value=2.6e+02 Score=24.33 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=46.6
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCC---hhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNI---KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~---~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
.++.+...-++..|++.|-.+.+.+.++ ++.+...+...|+.+-.+ .+....+.+..+.+.++..| -+.
T Consensus 39 ~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~------~~~~~~ey~~~~~~~l~~~p--~~i 110 (406)
T TIGR00936 39 LHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAW------RGETNEEYYWAIEQVLDHEP--NII 110 (406)
T ss_pred EechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEe------cCCCHHHHHHHHHHHhcCCC--CEE
Confidence 3566778889999999999998887664 344555566778772222 23333344444455555555 467
Q ss_pred EcCCc
Q 026634 219 VGDSL 223 (235)
Q Consensus 219 iGDs~ 223 (235)
++|+-
T Consensus 111 iDdGg 115 (406)
T TIGR00936 111 IDDGA 115 (406)
T ss_pred Eeccc
Confidence 77765
No 325
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.49 E-value=45 Score=24.99 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=25.8
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 87 ~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~ 118 (179)
T cd05005 87 ETSSVVNAAEKAKKAGAKVVLITSNPDSPLAK 118 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 45778899999999999999999876554443
No 326
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=36.25 E-value=23 Score=23.04 Aligned_cols=16 Identities=25% Similarity=0.190 Sum_probs=13.4
Q ss_pred eEEEEecCCCccCCcc
Q 026634 69 RGVVFDMDGTLTVPVI 84 (235)
Q Consensus 69 k~vifDlDGTL~d~~~ 84 (235)
-.++++-|||.+|++.
T Consensus 40 ~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 40 LTLVLEEDGTAVDSED 55 (81)
T ss_pred eEEEEecCCCEEccHH
Confidence 5788999999997763
No 327
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=36.12 E-value=1.1e+02 Score=22.90 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCC
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYK 196 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~K 196 (235)
.++++..++.|+++..+|+...+.++.+.+.+.-. ..++.+..+.+|
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k-~~vl~G~SGvGK 48 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGK-TSVLLGQSGVGK 48 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTS-EEEEECSTTSSH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCC-EEEEECCCCCCH
Confidence 36778888999999999988777777777666542 445566666555
No 328
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=36.08 E-value=2.3e+02 Score=22.81 Aligned_cols=81 Identities=12% Similarity=-0.038 Sum_probs=48.4
Q ss_pred HHHHhCCCeEEEEeCCChhHHH-HHHhh---cCce---EEEEEecCCCCCCCC-----hHHHHHHHHHcCCCCCcEEEEc
Q 026634 153 GFLDSKKIRRGLITRNIKEAVD-LFHNR---FGIT---FSPALSREFRPYKPD-----PGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 153 ~~l~~~g~~i~i~Sn~~~~~~~-~~~~~---lgl~---f~~i~~~~~~~~KP~-----~~~~~~~~~~l~~~~~~~v~iG 220 (235)
..++++|.-.+.+|++.-..+- ..+.. -+++ ++..++.|......+ ..+...++.++.+...+++.|.
T Consensus 34 ~~~~~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~dSNyg~~~~~~l~~v~~~~~~i~~id 113 (252)
T KOG3147|consen 34 KALKKRGRFTLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDPDSNYGLAKRHFLSKVPIPHYNIYPID 113 (252)
T ss_pred HHHhcCCeEEEEEcCCcHHHHHHHHhcccccCCCCccceEEEEEeccccCCCCCcccHHHHHHhhhhhCCCCcCcEEECC
Confidence 4456788888889988644322 12221 1333 344444442222222 2466778888998888999999
Q ss_pred CCchhhHHHHhhh
Q 026634 221 DSLKDDIDVVFNT 233 (235)
Q Consensus 221 Ds~~~Di~~A~~~ 233 (235)
.+...|-+.|++.
T Consensus 114 ~~L~~~~~~~a~~ 126 (252)
T KOG3147|consen 114 ESLIADAEEAADL 126 (252)
T ss_pred hhhccCHHHHHHH
Confidence 9984466666544
No 329
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=36.07 E-value=44 Score=24.46 Aligned_cols=31 Identities=3% Similarity=-0.105 Sum_probs=25.2
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
-.+.+.+.++.++++|.+++.+|++....+.
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCchh
Confidence 4578889999999999999999987655443
No 330
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=35.82 E-value=40 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=27.3
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
+..++.++=+.|++.|+.+.++.+.....+..+++.+|+
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 89 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGA 89 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCc
Confidence 345556667777778888888887777777777777774
No 331
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=35.77 E-value=37 Score=20.31 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHhCCCeEEEEe
Q 026634 146 PGTAQLCGFLDSKKIRRGLIT 166 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~S 166 (235)
|+-.+.|..|.+.|++|.|.+
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 345688999999999999988
No 332
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.77 E-value=41 Score=21.32 Aligned_cols=23 Identities=13% Similarity=-0.161 Sum_probs=20.3
Q ss_pred cccCHHHHHHHHHhCCCeEEEEe
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLIT 166 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~S 166 (235)
-.+.+.++++.++++|.+++.+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 35778899999999999999988
No 333
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=35.73 E-value=24 Score=22.81 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=13.2
Q ss_pred eEEEEecCCCccCCcc
Q 026634 69 RGVVFDMDGTLTVPVI 84 (235)
Q Consensus 69 k~vifDlDGTL~d~~~ 84 (235)
-.++++-|||.+|++.
T Consensus 41 ~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 41 VTLVLEEDGTVVDTEE 56 (78)
T ss_pred cEEEEeCCCCEEccHH
Confidence 4688999999997763
No 334
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=35.55 E-value=25 Score=29.28 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHH---------HHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCC
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL---------FHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQ 212 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~---------~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~ 212 (235)
.|-+..+.+.|+++|++++|+|-+....... -....|-+ ...-.......++...+..+.++++.+
T Consensus 44 TP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~a~~~~~~~~~-- 121 (311)
T TIGR00682 44 TPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKDAILLILEQLD-- 121 (311)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHHHHHHHHhcCC--
Confidence 4667788899999999999999654321100 01112211 000000011123333345566655543
Q ss_pred CCcEEEEcCCchhhHHHHh
Q 026634 213 PNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 213 ~~~~v~iGDs~~~Di~~A~ 231 (235)
-+++..+|+. .+...++
T Consensus 122 -~dviilDDGf-Qh~~l~r 138 (311)
T TIGR00682 122 -PDVIILDDGL-QHRKLHR 138 (311)
T ss_pred -CCEEEECCCC-cCccccC
Confidence 4588889988 6655443
No 335
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.37 E-value=2.7e+02 Score=24.48 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=34.5
Q ss_pred CeEEEEeCCChhHHHHHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCC-CcEEEEc
Q 026634 160 IRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQP-NEVMMVG 220 (235)
Q Consensus 160 ~~i~i~Sn~~~~~~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~-~~~v~iG 220 (235)
-+|+|+|+.....+..++..+.-. +...+-.-.+.+.-.+.-+..+++.++-.+ -+++.|+
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~ 194 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVG 194 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 379999988777766666554432 333332223344444555666666666432 3667774
No 336
>PLN02151 trehalose-phosphatase
Probab=35.30 E-value=55 Score=27.84 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHcCCCCC---cEEEEcCCchhhHHHHhh
Q 026634 197 PDPGPLLHICSTWEVQPN---EVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 197 P~~~~~~~~~~~l~~~~~---~~v~iGDs~~~Di~~A~~ 232 (235)
.|..++..+++.++.... -.+||||.. +|-.+-+.
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~-TDEDaF~~ 306 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDR-TDEDAFKI 306 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCC-cHHHHHHH
Confidence 567889999999886532 389999999 99777553
No 337
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=35.27 E-value=65 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=29.7
Q ss_pred ccccCHHHHHHHHHhCCCeEEEE-eCCC---hhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLI-TRNI---KEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~-Sn~~---~~~~~~~~~~lgl~ 183 (235)
-.+|.+.++++.+++.|+++++. ||+. .......+..+|++
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 45789999999999999999995 9864 22333444555655
No 338
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=35.25 E-value=43 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=25.2
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCCh
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK 170 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~ 170 (235)
.-+.|++.++++.++++|..+.+.||+..
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 34678999999999999999999999863
No 339
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=34.84 E-value=1.1e+02 Score=21.86 Aligned_cols=74 Identities=7% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChh--------HHHHHHhhcCceEEEEEecCCC-CCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKE--------AVDLFHNRFGITFSPALSREFR-PYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~--------~~~~~~~~lgl~f~~i~~~~~~-~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
+...++..++...+..++|++... .....+...|++-+.++..+.. .---........+++.+. .+++.
T Consensus 23 ~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~--~~i~l 100 (150)
T cd06259 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGI--RSVLL 100 (150)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCC--CeEEE
Confidence 345556666666778888877432 3445556667652333322111 111112334455555555 67888
Q ss_pred EcCCc
Q 026634 219 VGDSL 223 (235)
Q Consensus 219 iGDs~ 223 (235)
|-|..
T Consensus 101 VTs~~ 105 (150)
T cd06259 101 VTSAY 105 (150)
T ss_pred ECCHH
Confidence 87776
No 340
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=34.69 E-value=21 Score=31.45 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=12.3
Q ss_pred CCceEEEEecCCCccCCcc
Q 026634 66 TRLRGVVFDMDGTLTVPVI 84 (235)
Q Consensus 66 ~~~k~vifDlDGTL~d~~~ 84 (235)
..++++-||||-||+.-..
T Consensus 10 ~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 10 KDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CC--EEEE-TBTTTBEE-C
T ss_pred ccCCEEEECcccchhhcCH
Confidence 4589999999999996443
No 341
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=34.55 E-value=52 Score=25.17 Aligned_cols=32 Identities=6% Similarity=-0.160 Sum_probs=25.9
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+.+.+.++.++++|.+++.+|+.....+..
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 46788999999999999999999876544433
No 342
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=34.35 E-value=2.3e+02 Score=24.22 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=42.6
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecC----CCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE----FRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~----~~~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
....+.+..|++.|.++++||++.-. .=...+|+. ...+-..+ .+. ---...|...+..+|....+++.=
T Consensus 31 ~~l~~~ia~L~~~G~eVilVSSGAia---aG~~~Lg~~~rp~~l~~kQA~AAVGQ-~~Lm~~y~~~f~~~g~~v~QiLLT 106 (369)
T COG0263 31 EELVRQVAALHKAGHEVVLVSSGAIA---AGRTRLGLPKRPKTLAEKQAAAAVGQ-VRLMQLYEELFARYGIKVGQILLT 106 (369)
T ss_pred HHHHHHHHHHHhCCCEEEEEccchhh---hChhhcCCCCCCcchHHHHHHHHhCH-HHHHHHHHHHHHhcCCeeeEEEee
Confidence 34456789999999999999987422 222444443 11110000 000 001134666666777777777766
Q ss_pred cCCchhhHH
Q 026634 220 GDSLKDDID 228 (235)
Q Consensus 220 GDs~~~Di~ 228 (235)
-|.. .|-.
T Consensus 107 r~D~-~~r~ 114 (369)
T COG0263 107 RDDF-SDRR 114 (369)
T ss_pred hhhh-hhHH
Confidence 6665 5544
No 343
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=34.32 E-value=25 Score=22.43 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=13.5
Q ss_pred ceEEEEecCCCccCCcc
Q 026634 68 LRGVVFDMDGTLTVPVI 84 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~ 84 (235)
.-.++++-|||.+|++.
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 34688999999997653
No 344
>PLN03017 trehalose-phosphatase
Probab=34.21 E-value=54 Score=28.03 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHcCCCC---CcEEEEcCCchhhHHHHhh
Q 026634 196 KPDPGPLLHICSTWEVQP---NEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 196 KP~~~~~~~~~~~l~~~~---~~~v~iGDs~~~Di~~A~~ 232 (235)
-.|..+++.+++.++... .-.+||||.. +|-.+-+.
T Consensus 282 ~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~-TDEDaF~~ 320 (366)
T PLN03017 282 WDKGKALEFLLESLGFGNTNNVFPVYIGDDR-TDEDAFKM 320 (366)
T ss_pred CCHHHHHHHHHHhcccccCCCceEEEeCCCC-ccHHHHHH
Confidence 356788999999988653 3589999999 99777553
No 345
>PRK02141 Maf-like protein; Reviewed
Probab=33.47 E-value=2.3e+02 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=20.5
Q ss_pred CeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 160 IRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 160 ~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
.++++.|.+++. ..+++.+|++|+.+
T Consensus 9 ~~iILAS~SprR--~elL~~~G~~f~v~ 34 (207)
T PRK02141 9 PRLILASSSRYR--RELLERLRLPFDVV 34 (207)
T ss_pred CCEEEeCCCHHH--HHHHHHCCCCeEEE
Confidence 678999988765 66789999988654
No 346
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=93 Score=23.16 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=30.9
Q ss_pred ccccCHHHHHHHHHhCCCe-EEEEeCCChhHHHHHHhhcCce
Q 026634 143 QIMPGTAQLCGFLDSKKIR-RGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~-i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.=.||..+-...|+.+|+. |+++|-++........+.+|..
T Consensus 62 ~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~ 103 (171)
T KOG0541|consen 62 SHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGAN 103 (171)
T ss_pred ccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCcc
Confidence 3458999999999999997 5556766666666666777764
No 347
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=1.8e+02 Score=24.52 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCC---------------------hhHHHHHHhhcCce--EEEEEec
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNI---------------------KEAVDLFHNRFGIT--FSPALSR 190 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~---------------------~~~~~~~~~~lgl~--f~~i~~~ 190 (235)
--.++|+.+..+|+++.-.|+.. ...+++.++..|+. ...+++.
T Consensus 178 tKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 178 TKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSL 244 (430)
T ss_pred hhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEec
Confidence 34688999999999887665431 22356677778876 5555553
No 348
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.95 E-value=2.4e+02 Score=21.99 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCC---CeEEEEeCCChhHHHHHHhhcCce
Q 026634 148 TAQLCGFLDSKK---IRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 148 ~~~~l~~l~~~g---~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
+..+++.+++.+ ..++++||+....+....++.|++
T Consensus 13 ~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp 51 (207)
T PLN02331 13 FRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIP 51 (207)
T ss_pred HHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCC
Confidence 344555555543 235666776666666677777776
No 349
>PRK14368 Maf-like protein; Provisional
Probab=32.75 E-value=2.3e+02 Score=21.80 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=21.5
Q ss_pred CCeEEEEeCCChhHHHHHHhhcCceEEEEE
Q 026634 159 KIRRGLITRNIKEAVDLFHNRFGITFSPAL 188 (235)
Q Consensus 159 g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~ 188 (235)
..++++.|.+++. ..+++.+|+.|+.+-
T Consensus 4 ~~~lILAS~SprR--~eLL~~~g~~f~v~~ 31 (193)
T PRK14368 4 NSPIVLASASPRR--SELLASAGIEFDVVP 31 (193)
T ss_pred CCcEEEeCCCHHH--HHHHHHCCCCeEEEc
Confidence 4678999988755 667899999887543
No 350
>PRK00648 Maf-like protein; Reviewed
Probab=32.72 E-value=1.1e+02 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=21.5
Q ss_pred CCeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 159 KIRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 159 g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
++++++.|.+++. ..+++.+|++|+.+
T Consensus 2 ~~~lILAS~SprR--~elL~~~g~~f~v~ 28 (191)
T PRK00648 2 KYKIILASSSPRR--KEILEGFRIPFEVV 28 (191)
T ss_pred CCcEEEeCCCHHH--HHHHHHCCCCeEEE
Confidence 5678999988755 67789999988755
No 351
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=32.70 E-value=60 Score=26.74 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHhh
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVFN 232 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~~ 232 (235)
..-|.++.|.+.+.++|+..+.+|++=|.. +...+++.
T Consensus 70 ~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~-~~~~A~ra 107 (285)
T COG2897 70 HMLPSPEQFAKLLGELGIRNDDTVVVYDDG-GGFFAARA 107 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCC-CCeehHHH
Confidence 567889999999999999988877776666 66666653
No 352
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=32.57 E-value=75 Score=27.65 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcC
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG 181 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lg 181 (235)
.++=+.|++.|+++.+..+.+...+..+++.++
T Consensus 64 ~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~ 96 (429)
T TIGR02765 64 KDLRTSLRKLGSDLLVRSGKPEDVLPELIKELG 96 (429)
T ss_pred HHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhC
Confidence 333344444444444444444444444444444
No 353
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=31.52 E-value=1.6e+02 Score=21.05 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCCCCcEEEE
Q 026634 201 PLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~i 219 (235)
.|..+++.+++++++++++
T Consensus 53 L~~dVLrsl~L~~~q~~~l 71 (128)
T PF03603_consen 53 LFQDVLRSLKLTPEQVLHL 71 (128)
T ss_dssp HHHHHHHHTT--GGGEEEE
T ss_pred HHHHHHHHcCCCHHHhhcc
Confidence 7777777777777777665
No 354
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=31.47 E-value=84 Score=24.57 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=27.1
Q ss_pred ccccC-HHHHHHHHHhCCCeEEEEeCCC----hhHHHHHHhh
Q 026634 143 QIMPG-TAQLCGFLDSKKIRRGLITRNI----KEAVDLFHNR 179 (235)
Q Consensus 143 ~~~~~-~~~~l~~l~~~g~~i~i~Sn~~----~~~~~~~~~~ 179 (235)
.+.++ +.++++.+++.|+++.+.||+. .+.+..+++.
T Consensus 77 ll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 77 LLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 34566 4589999999999999999993 3445555554
No 355
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=31.41 E-value=94 Score=20.66 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..+++.|.+.|++++.-.....+...+.++.+|..
T Consensus 42 ~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 42 YHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 46688999999999999888778888888888854
No 356
>PRK13938 phosphoheptose isomerase; Provisional
Probab=31.30 E-value=61 Score=24.98 Aligned_cols=31 Identities=3% Similarity=-0.163 Sum_probs=25.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
-.+.+.+.++.++++|.+++.+|++....+.
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La 155 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQLA 155 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhh
Confidence 4678889999999999999999987655443
No 357
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=31.28 E-value=62 Score=25.62 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=22.5
Q ss_pred cccC-HHHHHHHHHhCCCeEEEEeCCCh
Q 026634 144 IMPG-TAQLCGFLDSKKIRRGLITRNIK 170 (235)
Q Consensus 144 ~~~~-~~~~l~~l~~~g~~i~i~Sn~~~ 170 (235)
+.++ +.++++.+++.|+++++.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4556 45899999999999999999873
No 358
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=30.98 E-value=62 Score=27.76 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=12.1
Q ss_pred ceEEEEecCCCcc
Q 026634 68 LRGVVFDMDGTLT 80 (235)
Q Consensus 68 ~k~vifDlDGTL~ 80 (235)
-++.|+|||.||+
T Consensus 197 eRVFiWDlDEtiI 209 (468)
T KOG3107|consen 197 ERVFIWDLDETII 209 (468)
T ss_pred eeEEEeeccchHH
Confidence 5899999999998
No 359
>PHA01976 helix-turn-helix protein
Probab=30.78 E-value=13 Score=22.72 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 174 DLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 174 ~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
..+.+.+|+.-..+...+.+...|..+.+.++++.+|++++..
T Consensus 19 ~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~~ia~~l~v~~~~l 61 (67)
T PHA01976 19 PELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWL 61 (67)
T ss_pred HHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4455556655222222334456899999999999999987643
No 360
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=30.61 E-value=2.7e+02 Score=21.86 Aligned_cols=54 Identities=7% Similarity=-0.127 Sum_probs=34.5
Q ss_pred CCeEEEEeCCChhHHH--HHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 159 KIRRGLITRNIKEAVD--LFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 159 g~~i~i~Sn~~~~~~~--~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
|.+++|++.++..+.. ..+.... . .+...--|.+..++.++.++|++-+++-++
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~~---~----~~~v~iIPgiSS~q~a~ARlg~~~~~~~~i 123 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRKF---S----CEEVEIIPGISSVQLAAARLGWPLQDTEVI 123 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHhc---C----ccceEEecChhHHHHHHHHhCCChHHeEEE
Confidence 7888888888766532 2222111 1 112234577788899999999888887766
No 361
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=30.50 E-value=1e+02 Score=21.97 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCCCcEEEE
Q 026634 201 PLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~i 219 (235)
.|..+++.+++++++|.++
T Consensus 52 L~~dVLrsl~L~~~q~~~l 70 (128)
T PRK06856 52 LLQDVLRSLTLSPDQVLCL 70 (128)
T ss_pred HHHHHHHHcCCCHHHeeee
Confidence 6777777777777766665
No 362
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=30.20 E-value=42 Score=31.93 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=32.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
+|...+.+.+..++..|++++.+|+.....++.+.+.-|+
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgI 629 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGI 629 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheee
Confidence 4567889999999999999999998877766666666553
No 363
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=30.10 E-value=1.6e+02 Score=19.14 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=35.2
Q ss_pred CeEEEEeCC--------ChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 160 IRRGLITRN--------IKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 160 ~~i~i~Sn~--------~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
.+++|+|.+ .-..+..+++..|+.|+.+--. .+++....+.+.-|..-=..+|||+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~------~~~~~~~~l~~~~g~~tvP~vfi~g~~ 73 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDIL------EDEEVRQGLKEYSNWPTFPQLYVNGEL 73 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcC------CCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 467777653 2345778889999886655211 124555555555565444567887765
No 364
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=30.07 E-value=1.9e+02 Score=21.32 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.1
Q ss_pred HHHHhCCCeEEEEe
Q 026634 153 GFLDSKKIRRGLIT 166 (235)
Q Consensus 153 ~~l~~~g~~i~i~S 166 (235)
+..++.|.+.+++|
T Consensus 30 ~~a~~~~~~~~v~t 43 (157)
T PF06574_consen 30 EIAKEKGLKSVVLT 43 (157)
T ss_dssp HHHHHCT-EEEEEE
T ss_pred hhhhhcccceEEEE
Confidence 33344455555554
No 365
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=29.80 E-value=3.7e+02 Score=23.29 Aligned_cols=49 Identities=8% Similarity=-0.039 Sum_probs=28.2
Q ss_pred CCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 167 RNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 167 n~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
.+-...+...++..|+. .|. -.|.-.-....++++.-....++.|||..
T Consensus 118 HGv~~~v~~~~~~rgl~iiDA--------TCP~V~kvh~~v~~~~~~Gy~iIIiG~~~ 167 (387)
T PRK13371 118 FGATVQEMQLLNEKGCHIVDT--------TCPWVSKVWNTVEKHKKKDFTSIIHGKYK 167 (387)
T ss_pred CCCCHHHHHHHHHCCCeEEec--------CCccchHHHHHHHHHHhCCCEEEEEcCCC
Confidence 34445555556666655 333 23444455556666666666777777754
No 366
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=29.64 E-value=34 Score=22.13 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=13.5
Q ss_pred ceEEEEecCCCccCCcc
Q 026634 68 LRGVVFDMDGTLTVPVI 84 (235)
Q Consensus 68 ~k~vifDlDGTL~d~~~ 84 (235)
.-.++++-|||.+|++.
T Consensus 40 ~~~lvL~eDGTeVddEe 56 (78)
T cd01615 40 PVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CeEEEEeCCCcEEccHH
Confidence 34688999999997653
No 367
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=29.63 E-value=2.6e+02 Score=21.41 Aligned_cols=74 Identities=9% Similarity=-0.002 Sum_probs=35.9
Q ss_pred HHHHHhCCCeEEEEeCC-------------ChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 152 CGFLDSKKIRRGLITRN-------------IKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 152 l~~l~~~g~~i~i~Sn~-------------~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
+..+++.|+.+..++.. ..+.++...+.+|++...+-.... ..-..+.+..+++++....-+.++
T Consensus 16 l~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~--~e~~~~~l~~~l~~~~~~g~~~vv 93 (194)
T cd01994 16 LYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGE--EEDEVEDLKELLRKLKEEGVDAVV 93 (194)
T ss_pred HHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCC--chHHHHHHHHHHHHHHHcCCCEEE
Confidence 44555677765444321 234556677888887332221110 000112233333333322345888
Q ss_pred EcCCchhhHH
Q 026634 219 VGDSLKDDID 228 (235)
Q Consensus 219 iGDs~~~Di~ 228 (235)
.||.. .|..
T Consensus 94 ~G~i~-sd~~ 102 (194)
T cd01994 94 FGAIL-SEYQ 102 (194)
T ss_pred ECccc-cHHH
Confidence 89988 6654
No 368
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=29.44 E-value=1.5e+02 Score=20.82 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=26.4
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEE
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP 186 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~ 186 (235)
+.+.++.+.+++.|+.++.++...........+..++.|..
T Consensus 44 ~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~ 84 (149)
T cd02970 44 RALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPV 84 (149)
T ss_pred HHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeE
Confidence 33445556666778888888876666555566666665443
No 369
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.24 E-value=3.6e+02 Score=22.99 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=46.2
Q ss_pred cCHHH-HHHHHHhCCCeEEEEeCCCh-------hHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcC-CCCCcE
Q 026634 146 PGTAQ-LCGFLDSKKIRRGLITRNIK-------EAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWE-VQPNEV 216 (235)
Q Consensus 146 ~~~~~-~l~~l~~~g~~i~i~Sn~~~-------~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~-~~~~~~ 216 (235)
+|+.+ +-+.+++.|-++.|+|+... ..+...++..|+.+. ++ +...+.|.-+.+.++++... ..++-+
T Consensus 11 ~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~-~~--~~v~~~p~~~~v~~~~~~~~~~~~D~I 87 (380)
T cd08185 11 AGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVV-VF--DKVEPNPTTTTVMEGAALAREEGCDFV 87 (380)
T ss_pred cCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEE-Ee--CCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34443 33445555678888887543 223444555565521 11 12245666677777665553 467788
Q ss_pred EEEcCCchhhHHHH
Q 026634 217 MMVGDSLKDDIDVV 230 (235)
Q Consensus 217 v~iGDs~~~Di~~A 230 (235)
+.||=+---|..-+
T Consensus 88 iavGGGS~iD~aK~ 101 (380)
T cd08185 88 VGLGGGSSMDTAKA 101 (380)
T ss_pred EEeCCccHHHHHHH
Confidence 88987543666533
No 370
>smart00455 RBD Raf-like Ras-binding domain.
Probab=29.08 E-value=54 Score=20.55 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
.+++-.+++..+|++.|+.|+.+.++
T Consensus 18 pg~tl~e~L~~~~~kr~l~~~~~~v~ 43 (70)
T smart00455 18 PGKTVRDALAKALKKRGLNPECCVVR 43 (70)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 57777889999999999999998877
No 371
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=29.05 E-value=90 Score=26.37 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=42.5
Q ss_pred HHHhC-CCeE-EEEeCCC--hhHHHHHHhhcCce-EEEEEecCCC-CCCCChHHHHHHHHHcC-CCCCcEEEEcCCchhh
Q 026634 154 FLDSK-KIRR-GLITRNI--KEAVDLFHNRFGIT-FSPALSREFR-PYKPDPGPLLHICSTWE-VQPNEVMMVGDSLKDD 226 (235)
Q Consensus 154 ~l~~~-g~~i-~i~Sn~~--~~~~~~~~~~lgl~-f~~i~~~~~~-~~KP~~~~~~~~~~~l~-~~~~~~v~iGDs~~~D 226 (235)
.|++. ++.+ .|+|+.. ..+...+.+.+++. .+..+..+.. ..+--...+..+.+.+. ..|+=+++.||.. .=
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~-~~ 80 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRN-EA 80 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSH-HH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc-hH
Confidence 34554 5654 4566655 67777777878874 5665553321 12111222233222222 3799999999999 77
Q ss_pred HHHHhhh
Q 026634 227 IDVVFNT 233 (235)
Q Consensus 227 i~~A~~~ 233 (235)
+.+|..+
T Consensus 81 la~alaA 87 (346)
T PF02350_consen 81 LAAALAA 87 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 372
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=28.95 E-value=1.3e+02 Score=25.97 Aligned_cols=83 Identities=17% Similarity=0.036 Sum_probs=55.1
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEc
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iG 220 (235)
.-.|++..++..+.+- +++++.|.+.....+.++..++-. |...+-.+.. .-+.+. |.+-+...+.+-+.++.|.
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc-~~~~G~-~ikDis~i~r~l~~viiId 328 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDKVFSHRLFRESC-VSYLGV-YIKDISKIGRSLDKVIIID 328 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccceeehhhhcccc-eeccCc-hhhhHHhhccCCCceEEee
Confidence 4578999999988777 899999999888888877766644 2221111111 112222 4455566778889999999
Q ss_pred CCchhhHH
Q 026634 221 DSLKDDID 228 (235)
Q Consensus 221 Ds~~~Di~ 228 (235)
+++.....
T Consensus 329 ~~p~SY~~ 336 (390)
T COG5190 329 NSPASYEF 336 (390)
T ss_pred CChhhhhh
Confidence 99855543
No 373
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=28.76 E-value=71 Score=25.76 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=23.7
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNI 169 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~ 169 (235)
..+|+..++++.|+++|+++++..+..
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 468999999999999999999988654
No 374
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=28.63 E-value=1.2e+02 Score=24.25 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
.+++..|++.|+.|+.++......-...+..+|+
T Consensus 199 ~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 199 KNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred HHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCC
Confidence 4567778888887655554333334455666665
No 375
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=28.29 E-value=36 Score=22.14 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.1
Q ss_pred eEEEEecCCCccCCcc
Q 026634 69 RGVVFDMDGTLTVPVI 84 (235)
Q Consensus 69 k~vifDlDGTL~d~~~ 84 (235)
-.++++-|||.+|++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4688999999997653
No 376
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.05 E-value=2.4e+02 Score=24.83 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHhC-CCeEEEEe-C-CChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcC-CCCCcEEEE
Q 026634 145 MPGTAQLCGFLDSK-KIRRGLIT-R-NIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWE-VQPNEVMMV 219 (235)
Q Consensus 145 ~~~~~~~l~~l~~~-g~~i~i~S-n-~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~-~~~~~~v~i 219 (235)
.|.+.+-|+.|-++ |++++-.. + .+.+.+...++..... +|.++..-.++-.-+.+.+.++.+-.. +.|+++++|
T Consensus 140 RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llV 219 (451)
T COG0541 140 RPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLV 219 (451)
T ss_pred ChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEE
Confidence 45555555444433 44433331 1 1222334444443333 455443323333334456666555444 589999999
Q ss_pred cCCchhhHHHHh
Q 026634 220 GDSLKDDIDVVF 231 (235)
Q Consensus 220 GDs~~~Di~~A~ 231 (235)
=|+. ..-.+++
T Consensus 220 vDam-~GQdA~~ 230 (451)
T COG0541 220 VDAM-IGQDAVN 230 (451)
T ss_pred Eecc-cchHHHH
Confidence 9998 7766655
No 377
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=52 Score=26.61 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=23.9
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChh
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~ 171 (235)
-.+.+.++++.+++.|+.+++.||+...
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 3567789999999999999999998644
No 378
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=27.75 E-value=1.1e+02 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.1
Q ss_pred ccccCH-HHHHHHHHhCCCeEEEEeCCCh
Q 026634 143 QIMPGT-AQLCGFLDSKKIRRGLITRNIK 170 (235)
Q Consensus 143 ~~~~~~-~~~l~~l~~~g~~i~i~Sn~~~ 170 (235)
.+.++. .++++.+++.|+.+.+.||+..
T Consensus 137 ll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 137 LLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 345665 6899999999999999999853
No 379
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.70 E-value=76 Score=20.50 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=19.0
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCC
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNI 169 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~ 169 (235)
...++++.|++.|+++...|++.
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCCCH
Confidence 37788999999999988877663
No 380
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=27.65 E-value=1.9e+02 Score=23.24 Aligned_cols=37 Identities=24% Similarity=0.533 Sum_probs=30.8
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcC
Q 026634 184 FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (235)
Q Consensus 184 f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGD 221 (235)
||.|+|-|...--|+|+.+...|.++ +.|.-.+|+..
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~l-vkP~G~lf~ST 161 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKL-VKPGGILFLST 161 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHH-cCCCcEEEEec
Confidence 99999999988889999999988875 56777777654
No 381
>PRK13936 phosphoheptose isomerase; Provisional
Probab=27.56 E-value=75 Score=24.38 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=25.7
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+.+.+.++.++++|.+++.+|+.....+..
T Consensus 123 ~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 123 NSANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 45778899999999999999999876554444
No 382
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=27.53 E-value=1.8e+02 Score=18.95 Aligned_cols=37 Identities=14% Similarity=-0.064 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHhC--CCeEEEEeCCChhHHHHHHhhcCc
Q 026634 146 PGTAQLCGFLDSK--KIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 146 ~~~~~~l~~l~~~--g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
-...++++.+++. +.+++++|+..........-..|.
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~ 94 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGA 94 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTE
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCC
Confidence 3556777777764 478888887665444444446664
No 383
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.12 E-value=72 Score=24.59 Aligned_cols=33 Identities=3% Similarity=-0.158 Sum_probs=26.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLF 176 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~ 176 (235)
-.+.+.+.++.+|++|.+++.+|+.....+...
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l 153 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGL 153 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhc
Confidence 357788999999999999999998776544443
No 384
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=27.05 E-value=1.8e+02 Score=26.15 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceE---------EEEEecCC-----------CCCCCChHHHHH
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITF---------SPALSREF-----------RPYKPDPGPLLH 204 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f---------~~i~~~~~-----------~~~KP~~~~~~~ 204 (235)
.+++.++.+.|.+.|++++ .|.+. ...++..|+.+ ..++.+.+ ......++ .+
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgGT----ak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~--~~ 82 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGGT----AKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDD--DA 82 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-EechH----HHHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchH--HH
Confidence 6888999999999999884 55443 34467777762 22222221 11223333 67
Q ss_pred HHHHcCCCCCcEEEEc
Q 026634 205 ICSTWEVQPNEVMMVG 220 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iG 220 (235)
.++++|+.|=+.|+|-
T Consensus 83 ~l~~~~I~~IDlVvvN 98 (511)
T TIGR00355 83 DLEEHGIEPIDLVVVN 98 (511)
T ss_pred HHHHcCCCceeEEEEe
Confidence 7888999888877763
No 385
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=27.03 E-value=1.1e+02 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.9
Q ss_pred CceEEEEecCCCccCCc
Q 026634 67 RLRGVVFDMDGTLTVPV 83 (235)
Q Consensus 67 ~~k~vifDlDGTL~d~~ 83 (235)
..+.|++|||+|..+..
T Consensus 138 ~~~~i~LDiD~T~~~~~ 154 (448)
T PF13701_consen 138 PPKEIVLDIDSTVDDVH 154 (448)
T ss_pred ccceEEEecccccccch
Confidence 35899999999987654
No 386
>PRK14363 Maf-like protein; Provisional
Probab=27.01 E-value=2.3e+02 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=19.8
Q ss_pred CeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 160 IRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 160 ~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
+++++.|.+++. ..+++.+|+.|+.+
T Consensus 1 ~~iILAS~SprR--~elL~~~G~~f~v~ 26 (204)
T PRK14363 1 MRIILASSSPRR--RQLMELLGIEFEVE 26 (204)
T ss_pred CcEEEeCCCHHH--HHHHHhCCCCeEEE
Confidence 467888888655 67789999987654
No 387
>PRK00234 Maf-like protein; Reviewed
Probab=26.85 E-value=2e+02 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=19.4
Q ss_pred eEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 161 RRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 161 ~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
++++.|++++. ..+++.+|+.|..+
T Consensus 3 ~iILAS~SprR--~elL~~~gi~f~v~ 27 (192)
T PRK00234 3 PLLLASSSPYR--RELLARLRLPFTWA 27 (192)
T ss_pred CEEEecCCHHH--HHHHHHCCCCcEEE
Confidence 57888888655 67789999988754
No 388
>PRK04425 Maf-like protein; Reviewed
Probab=26.66 E-value=3e+02 Score=21.22 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=20.7
Q ss_pred CCeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 159 KIRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 159 g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
..++++.|.+++. ..+++.+|+.|+.+
T Consensus 4 ~~~iILAS~SprR--~elL~~~g~~f~v~ 30 (196)
T PRK04425 4 ELPLVLGTSSVFR--REQMERLGIAFQAA 30 (196)
T ss_pred CCcEEEeCCCHHH--HHHHHHCCCCeEEE
Confidence 3578899988755 67789999988744
No 389
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=26.59 E-value=1.7e+02 Score=25.28 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHhCCCeEEEEe-CCChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 153 GFLDSKKIRRGLIT-RNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 153 ~~l~~~g~~i~i~S-n~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
+.+...|.++.... .++...+-.++...|..||....+| .+.+.+.|++|++++|-|... .+-+.+.
T Consensus 46 ~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gE-----------l~~al~aG~~~~~I~f~g~~k-s~~ei~~ 113 (394)
T COG0019 46 SAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGE-----------LELALAAGFPPERIVFSGPAK-SEEEIAF 113 (394)
T ss_pred HHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecCHHH-----------HHHHHHcCCChhhEEECCCCC-CHHHHHH
Confidence 33333345555544 2333445555666666666642222 222333488888888877776 5544443
No 390
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=26.43 E-value=99 Score=21.83 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=23.3
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRN 168 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~ 168 (235)
..+|.+.++++.+++.|++++++.-+
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 56799999999999999999999855
No 391
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.31 E-value=1e+02 Score=18.61 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=20.1
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCC
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNI 169 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~ 169 (235)
...++++.+++.|++.+.+|+.+
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36789999999999999999765
No 392
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=26.30 E-value=41 Score=21.81 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.1
Q ss_pred eEEEEecCCCccCCcc
Q 026634 69 RGVVFDMDGTLTVPVI 84 (235)
Q Consensus 69 k~vifDlDGTL~d~~~ 84 (235)
-.++++-|||.+|++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4688999999997653
No 393
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.25 E-value=74 Score=25.69 Aligned_cols=32 Identities=9% Similarity=-0.227 Sum_probs=25.7
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
..+.+.++++.++++|.+++++|++....+..
T Consensus 187 ~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 187 ERRELNLAADEALRVGAKVLAITGFTPNALQQ 218 (278)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcCCCCCchHH
Confidence 45677888999999999999999986655544
No 394
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=26.18 E-value=38 Score=25.99 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=12.0
Q ss_pred ceEEEEecCCCccC
Q 026634 68 LRGVVFDMDGTLTV 81 (235)
Q Consensus 68 ~k~vifDlDGTL~d 81 (235)
-..|-||+|||++-
T Consensus 58 E~~v~~D~~GT~m~ 71 (271)
T PF06901_consen 58 EHTVTFDFQGTKMV 71 (271)
T ss_pred eeeEEEeccceEEE
Confidence 47899999999984
No 395
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=25.95 E-value=26 Score=22.35 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=8.2
Q ss_pred EEecCCCcc
Q 026634 72 VFDMDGTLT 80 (235)
Q Consensus 72 ifDlDGTL~ 80 (235)
=|||+|.++
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 399999999
No 396
>PF10885 DUF2684: Protein of unknown function (DUF2684); InterPro: IPR020263 This entry contains proteins with no known function.
Probab=25.84 E-value=25 Score=22.63 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCCcceeEEeeCchhhhhhcccccccchhhhhhhcccc
Q 026634 3 HAFPSLTLTVQIPSHFLSKYQNHHKFMPLFLSKSFLFLP 41 (235)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (235)
-++|.-|+++.=.+++|+.+-.+.+.+...++..+...+
T Consensus 2 ~~d~t~t~~~~~t~slsvn~y~winiw~AILgq~f~~fP 40 (89)
T PF10885_consen 2 VADPTTTLQVKNTGSLSVNRYGWINIWMAILGQFFTRFP 40 (89)
T ss_pred ccCCccccccccCcceeEeccceehHHHHHHHhHhhcCc
Confidence 378899999999999999999999999888887776544
No 397
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=25.74 E-value=1e+02 Score=19.64 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.-|-...++.+++++++++..+..|-+.- ..|..++
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTndG-vGINP~q 60 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITNDG-IGINPAQ 60 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecCc-cccChhh
Confidence 45777889999999999999888886655 5554443
No 398
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.52 E-value=1.7e+02 Score=22.53 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
+.+.++.+++.|+++++---+....--..+..+..+
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d 169 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVD 169 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCC
Confidence 688999999999999984322222222334544443
No 399
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=25.47 E-value=91 Score=25.41 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=25.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.+.+.++++.++++|.+++.+|+.....+..
T Consensus 199 ~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~ 230 (292)
T PRK11337 199 RTSDVIEAVELAKKNGAKIICITNSYHSPIAK 230 (292)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 35678899999999999999999876654443
No 400
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=25.42 E-value=3.1e+02 Score=20.88 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.0
Q ss_pred CeEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 160 IRRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 160 ~~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
.++++.|++++. ..+++.+|+.|..+
T Consensus 3 ~~lILAS~SprR--~elL~~~g~~f~v~ 28 (183)
T TIGR00172 3 KELILASQSPRR--KELLEELGISFEQI 28 (183)
T ss_pred CCEEEeCCCHHH--HHHHHHCCCCeEEE
Confidence 468889988655 67789999988754
No 401
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=1.8e+02 Score=23.08 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=36.2
Q ss_pred cCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEe
Q 026634 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (235)
Q Consensus 146 ~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~ 189 (235)
.++...+..|..+++.+++||-.+.+.+...-+++|..|+.+.+
T Consensus 99 D~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW~f~w~Ss 142 (247)
T COG4312 99 DHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGWQFPWVSS 142 (247)
T ss_pred hhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCCcceeEec
Confidence 34456678889999999999999999998888999988666544
No 402
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=25.23 E-value=14 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhc
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRF 180 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l 180 (235)
++.+.|++.|+..+-+|...+......+..+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 4557788899999999988888777666543
No 403
>PRK00148 Maf-like protein; Reviewed
Probab=25.09 E-value=2.6e+02 Score=21.52 Aligned_cols=25 Identities=16% Similarity=-0.071 Sum_probs=18.8
Q ss_pred eEEEEeCCChhHHHHHHhhcCceEEEE
Q 026634 161 RRGLITRNIKEAVDLFHNRFGITFSPA 187 (235)
Q Consensus 161 ~i~i~Sn~~~~~~~~~~~~lgl~f~~i 187 (235)
++++.|++++. ..+++.+|+.|..+
T Consensus 2 ~iILAS~SprR--~elL~~~g~~f~~~ 26 (194)
T PRK00148 2 RLVLASASPAR--LKLLRLAGIPPLVV 26 (194)
T ss_pred CEEEeCCCHHH--HHHHHHCCCCeEEE
Confidence 47788887655 67789999988644
No 404
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.73 E-value=2.3e+02 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=9.9
Q ss_pred cccCHHHHHHHHHhCCCeEEE
Q 026634 144 IMPGTAQLCGFLDSKKIRRGL 164 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i 164 (235)
+.++..++.+.|++.|.....
T Consensus 11 p~~~~~~l~~~l~~~G~~~~~ 31 (255)
T PRK05752 11 PAEECAALAASLAEAGIFSSS 31 (255)
T ss_pred cHHHHHHHHHHHHHcCCCEEE
Confidence 334444555555555544433
No 405
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=24.71 E-value=2.8e+02 Score=24.85 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=49.4
Q ss_pred CcccccCHHHHHHHHHhC--CCeEEEEeCCChhHHHHHHhhcCce--EEEEEecCCC-CCCCChHHHHHHHHH-------
Q 026634 141 RLQIMPGTAQLCGFLDSK--KIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-PYKPDPGPLLHICST------- 208 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~--g~~i~i~Sn~~~~~~~~~~~~lgl~--f~~i~~~~~~-~~KP~~~~~~~~~~~------- 208 (235)
.++..|.+...++.+... ++..-++-. .......+.+++. ...++.++.. .+++..+.+...+..
T Consensus 128 ~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~---~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 204 (515)
T TIGR03140 128 TCQNCPDVVQALNQMALLNPNISHTMIDG---ALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAA 204 (515)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEEEEEc---hhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccc
Confidence 455667888888777765 333222221 2223344566655 2333333322 344444444333332
Q ss_pred ---cCCCCCcEEEEcCCchhhHHHHhhh
Q 026634 209 ---WEVQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 209 ---l~~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
-...+-++++||=++ ..+.+|..+
T Consensus 205 ~~~~~~~~~dVvIIGgGp-AGl~AA~~l 231 (515)
T TIGR03140 205 SALEQLDPYDVLVVGGGP-AGAAAAIYA 231 (515)
T ss_pred hhccccCCCCEEEECCCH-HHHHHHHHH
Confidence 124567899999999 999999865
No 406
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=24.69 E-value=45 Score=21.56 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.1
Q ss_pred eEEEEecCCCccCCc
Q 026634 69 RGVVFDMDGTLTVPV 83 (235)
Q Consensus 69 k~vifDlDGTL~d~~ 83 (235)
-.++++=|||.+|.+
T Consensus 41 ~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDE 55 (78)
T ss_dssp CEEEETTTTCBESSC
T ss_pred cEEEEeCCCcEEccH
Confidence 346789999999865
No 407
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.60 E-value=4.2e+02 Score=22.19 Aligned_cols=58 Identities=10% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhH---HHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcC
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWE 210 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~---~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~ 210 (235)
++.-.+|.++|++++++|-+.... ..++.+..++... ++..| ..+|+. .|+++.+.+.
T Consensus 63 KayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~-~i~~D--ft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVR-IIAID--FTKGDE-VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEE-EEEEe--cCCCch-hHHHHHHHhc
Confidence 566788888999999999665443 2344455554411 12222 244444 5666666653
No 408
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.54 E-value=94 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.289 Sum_probs=22.0
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITR 167 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn 167 (235)
..+|+..++++.|++.|+++++...
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4679999999999999999988764
No 409
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=24.43 E-value=3.1e+02 Score=22.52 Aligned_cols=77 Identities=6% Similarity=-0.061 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc---eE-------EEEEecCC--------CCCCC-ChHHHHHHHH
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI---TF-------SPALSREF--------RPYKP-DPGPLLHICS 207 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl---~f-------~~i~~~~~--------~~~KP-~~~~~~~~~~ 207 (235)
.+.+-+..|++.|.++++||++....-...+...+. .+ ..+-.... ..+++ -...|+..+.
T Consensus 35 ~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~ 114 (284)
T cd04256 35 SIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMFT 114 (284)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHHH
Confidence 345567788899999998888765555554443321 01 11000000 00111 1246888888
Q ss_pred HcCCCCCcEEEEcCCc
Q 026634 208 TWEVQPNEVMMVGDSL 223 (235)
Q Consensus 208 ~l~~~~~~~v~iGDs~ 223 (235)
++++.+.+++.-.+..
T Consensus 115 ~~~~~~~q~llt~~d~ 130 (284)
T cd04256 115 QYGITVAQVLVTKPDF 130 (284)
T ss_pred HcCCcHHHeeeecccc
Confidence 8999999987665544
No 410
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=24.41 E-value=2.7e+02 Score=23.30 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHhC-CCe-EEEEeCCChhHHHHHHhhcCceEE--EEEecC-CCCCCCChHHHHHHHHHc-CCCCCcEEEEcCC
Q 026634 149 AQLCGFLDSK-KIR-RGLITRNIKEAVDLFHNRFGITFS--PALSRE-FRPYKPDPGPLLHICSTW-EVQPNEVMMVGDS 222 (235)
Q Consensus 149 ~~~l~~l~~~-g~~-i~i~Sn~~~~~~~~~~~~lgl~f~--~i~~~~-~~~~KP~~~~~~~~~~~l-~~~~~~~v~iGDs 222 (235)
..+++.|++. ++. ..++|+........+.+.+++..+ ..++.. ....+-....+..+.+.+ ...|+=++..||.
T Consensus 17 ~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~ 96 (365)
T TIGR00236 17 APLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDT 96 (365)
T ss_pred HHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4567777765 443 567777777778888877888633 222221 011111122222222222 2347777777887
Q ss_pred chhhHHHHhh
Q 026634 223 LKDDIDVVFN 232 (235)
Q Consensus 223 ~~~Di~~A~~ 232 (235)
. .-+.+|..
T Consensus 97 ~-~~la~a~a 105 (365)
T TIGR00236 97 T-TTLAGALA 105 (365)
T ss_pred h-HHHHHHHH
Confidence 7 66655543
No 411
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=24.34 E-value=1e+02 Score=19.62 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 200 GPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 200 ~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
+.+.++|+.++++|.+++-+.++.
T Consensus 46 ~tL~~iC~~LeCqpgDiley~~d~ 69 (73)
T COG3655 46 STLEKICKALECQPGDILEYVPDS 69 (73)
T ss_pred HHHHHHHHHcCCChhheeEEecCC
Confidence 678999999999999999885554
No 412
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=24.28 E-value=3e+02 Score=22.49 Aligned_cols=75 Identities=13% Similarity=-0.011 Sum_probs=43.7
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHH---HHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCC--CcEE
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAV---DLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQP--NEVM 217 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~---~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~--~~~v 217 (235)
.+.....-++..|++.|-.+.+.++++-... ...+...|+.+-.+ ++....+.+..+.+.+...+ ..-+
T Consensus 51 Hle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~------~get~eey~~~i~~~L~~~~~~~P~~ 124 (268)
T PF05221_consen 51 HLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAW------KGETDEEYWWCIEKALSWEDDHGPNL 124 (268)
T ss_dssp --SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-------TT--HHHHHHHHHHCHSESTTCE-SE
T ss_pred echHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEe------CCCCHHHHHHHHHHHhcCCCCCCcce
Confidence 4556778889999999999999987764444 44445567762222 34444455555555664322 3456
Q ss_pred EEcCCc
Q 026634 218 MVGDSL 223 (235)
Q Consensus 218 ~iGDs~ 223 (235)
.|+|+.
T Consensus 125 iiDDG~ 130 (268)
T PF05221_consen 125 IIDDGG 130 (268)
T ss_dssp EEESSS
T ss_pred eecchH
Confidence 777776
No 413
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=24.25 E-value=4.7e+02 Score=22.60 Aligned_cols=76 Identities=8% Similarity=0.104 Sum_probs=49.0
Q ss_pred cccCHHHHHHHHHhCCCeEEEE-----------------eCCChhHHHHHHhhcCce-EE-----EEEecCCC-CCCCCh
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLI-----------------TRNIKEAVDLFHNRFGIT-FS-----PALSREFR-PYKPDP 199 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~-----------------Sn~~~~~~~~~~~~lgl~-f~-----~i~~~~~~-~~KP~~ 199 (235)
+.|-...+++.|++.|.+++.+ +.++....+..++.++-. ++ -++--|.. --+.++
T Consensus 222 ~~P~~~tvl~~L~e~g~~vi~IGKI~DI~~~~Git~~~~~~~n~~~~d~tl~~~~~~~~~~~vFtNlVdfD~~yGHRrDv 301 (397)
T COG1015 222 VKPFAPTVLDKLKEAGRPVIAIGKIADIYAGQGITEKVKAVSNMDGMDVTLEEMKTAEFNGLVFTNLVDFDSLYGHRRDV 301 (397)
T ss_pred cCCChhhHHHHHHHcCCceEEEeeHHhhhccccccccccCCCcHHHHHHHHHHHhcCCCCcEEEEeeeecccccccccch
Confidence 4466688899999999987664 234555566666666532 32 23333322 356678
Q ss_pred HHHHHHHHHc---------CCCCCcEEEE
Q 026634 200 GPLLHICSTW---------EVQPNEVMMV 219 (235)
Q Consensus 200 ~~~~~~~~~l---------~~~~~~~v~i 219 (235)
..|.++++.+ .++++.++.|
T Consensus 302 ~gYa~aLe~FD~rL~e~~~~l~edDlLii 330 (397)
T COG1015 302 AGYAAALEEFDRRLPELIENLREDDLLII 330 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8888888876 3567777776
No 414
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=24.21 E-value=63 Score=23.12 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=19.5
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITR 167 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn 167 (235)
-.|.+.++++..|++|.+++.+|+
T Consensus 115 ~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 115 NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 457889999999999999998884
No 415
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=24.18 E-value=2.6e+02 Score=20.68 Aligned_cols=35 Identities=6% Similarity=-0.004 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.+-++.+..++.|++++|+|++ ..+...++....+
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Gg--t~ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGG--TLARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcCh--HHHHHHHHHhCCC
Confidence 5678888889999999999988 4667777776644
No 416
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=23.89 E-value=3.3e+02 Score=21.18 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=49.8
Q ss_pred CcccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhc-Cce-EEEEEecCCC------------CCCCChHHHHHHH
Q 026634 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GIT-FSPALSREFR------------PYKPDPGPLLHIC 206 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~l-gl~-f~~i~~~~~~------------~~KP~~~~~~~~~ 206 (235)
......|+..+++.|++-++.+....... .++.+-+.+ ++. +|.|+-+|.+ ..|+.|..++.+.
T Consensus 27 s~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~--~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~lik 104 (254)
T COG5426 27 SVTYHEGADPLLKALRGGEYDVTYMPAHD--AQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIK 104 (254)
T ss_pred ceecccCchHHHHHHhCCCcceEEechHH--HHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHH
Confidence 45678899999999999999988877542 233333332 444 7877765532 3678887766655
Q ss_pred HHcCCCCCcEEEEcC
Q 026634 207 STWEVQPNEVMMVGD 221 (235)
Q Consensus 207 ~~l~~~~~~~v~iGD 221 (235)
+..+ ...-.+|||-
T Consensus 105 dyV~-~GGGLLMiGG 118 (254)
T COG5426 105 DYVE-NGGGLLMIGG 118 (254)
T ss_pred HHHh-cCCcEEEEcc
Confidence 4332 3445666664
No 417
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=23.82 E-value=84 Score=26.45 Aligned_cols=31 Identities=3% Similarity=-0.066 Sum_probs=25.3
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
-.+++.+.++.++++|.+++.+||.....+.
T Consensus 104 eT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~ 134 (340)
T PRK11382 104 KTEEVIKALELGRACGALTAAFTKRADSPIT 134 (340)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 3578899999999999999999987655443
No 418
>PRK00884 Maf-like protein; Reviewed
Probab=23.75 E-value=2.5e+02 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=19.9
Q ss_pred eEEEEeCCChhHHHHHHhhcCceEEEEE
Q 026634 161 RRGLITRNIKEAVDLFHNRFGITFSPAL 188 (235)
Q Consensus 161 ~i~i~Sn~~~~~~~~~~~~lgl~f~~i~ 188 (235)
++++.|.+++. ..+++.+|+.|..+.
T Consensus 3 ~iILAS~SprR--~elL~~~g~~f~v~~ 28 (194)
T PRK00884 3 QLILASTSPYR--RALLEKLQLPFECAA 28 (194)
T ss_pred CEEEeCCCHHH--HHHHHHCCCCCEEEC
Confidence 57888888655 677899999887553
No 419
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=23.75 E-value=1.6e+02 Score=19.14 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=23.1
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHcCCCCCc
Q 026634 184 FSPALSREFRPYKPDPGPLLHICSTWEVQPNE 215 (235)
Q Consensus 184 f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 215 (235)
|...+......+-|-++.+.++.+++++++++
T Consensus 9 f~~tIaIrvp~~~~y~~L~~ki~~kLkl~~e~ 40 (80)
T cd06406 9 FKYTVAIQVARGLSYATLLQKISSKLELPAEH 40 (80)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHhCCCchh
Confidence 44455555556777888899999999886554
No 420
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.73 E-value=4.6e+02 Score=22.30 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=24.4
Q ss_pred HHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 151 ~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
.++..++.|.+++++|.++.. -+..++.||-+
T Consensus 197 aVq~AKAMG~rV~vis~~~~k-keea~~~LGAd 228 (360)
T KOG0023|consen 197 AVQYAKAMGMRVTVISTSSKK-KEEAIKSLGAD 228 (360)
T ss_pred HHHHHHHhCcEEEEEeCCchh-HHHHHHhcCcc
Confidence 367888899999999988754 34556888876
No 421
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.71 E-value=1.9e+02 Score=21.42 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHHhCCCe-EEEEeCCChhHHHHHHhhcCce
Q 026634 144 IMPGTAQLCGFLDSKKIR-RGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~-i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
-.||-.++...++++|+. |+++|-++........+..|.+
T Consensus 57 hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~ 97 (165)
T COG0678 57 HLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGE 97 (165)
T ss_pred cCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCC
Confidence 458888999999999986 7778877777666666777765
No 422
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.46 E-value=1.4e+02 Score=23.88 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=33.0
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..||-...=+.|++.|++.+|+|.++.......++..|+.
T Consensus 72 a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 72 AAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 4567667777789999999999999988888888888865
No 423
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=23.44 E-value=1.7e+02 Score=23.53 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCc
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl 182 (235)
.++++.++++|+++.+-|=+.........+.+|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GV 251 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNV 251 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCC
Confidence 4788999999999999997776666665543785
No 424
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=23.34 E-value=3e+02 Score=24.66 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=49.0
Q ss_pred CcccccCHHHHHHHHHhC--CCeEEEEeCCChhHHHHHHhhcCce-E-EEEEecCCC-CCCCChH-HHHHHHHHcC----
Q 026634 141 RLQIMPGTAQLCGFLDSK--KIRRGLITRNIKEAVDLFHNRFGIT-F-SPALSREFR-PYKPDPG-PLLHICSTWE---- 210 (235)
Q Consensus 141 ~~~~~~~~~~~l~~l~~~--g~~i~i~Sn~~~~~~~~~~~~lgl~-f-~~i~~~~~~-~~KP~~~-~~~~~~~~l~---- 210 (235)
.++..|.+...++.+... ++..-.+ +........+.+++. + ..++.++.. .+++..+ +..++.+..+
T Consensus 127 ~Cp~Cp~~v~~~~~~a~~~~~i~~~~i---d~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 203 (517)
T PRK15317 127 SCHNCPDVVQALNLMAVLNPNITHTMI---DGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAA 203 (517)
T ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEE---EchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccch
Confidence 455667888888777765 3333333 222223444566665 2 223333322 3444443 3333333222
Q ss_pred -----CCCCcEEEEcCCchhhHHHHhhh
Q 026634 211 -----VQPNEVMMVGDSLKDDIDVVFNT 233 (235)
Q Consensus 211 -----~~~~~~v~iGDs~~~Di~~A~~~ 233 (235)
...-++++||=++ ..+.+|..+
T Consensus 204 ~~~~~~~~~dvvIIGgGp-aGl~aA~~l 230 (517)
T PRK15317 204 EELNAKDPYDVLVVGGGP-AGAAAAIYA 230 (517)
T ss_pred hhcccCCCCCEEEECCCH-HHHHHHHHH
Confidence 2345899999999 999999865
No 425
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=23.26 E-value=4.1e+02 Score=21.59 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHHh--CCCeEEEEeCCChhHHHHHHhhcCceEEE-EEecCCCCCCCChHH----HHHHHHHcCCCCCcEE
Q 026634 145 MPGTAQLCGFLDS--KKIRRGLITRNIKEAVDLFHNRFGITFSP-ALSREFRPYKPDPGP----LLHICSTWEVQPNEVM 217 (235)
Q Consensus 145 ~~~~~~~l~~l~~--~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~-i~~~~~~~~KP~~~~----~~~~~~~l~~~~~~~v 217 (235)
...+.|.--+|++ .|..+.++|-++......+-+.|....|. ++-.+.....+++.. +..++++.+.+ .+
T Consensus 39 D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~---LV 115 (260)
T COG2086 39 DLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPD---LV 115 (260)
T ss_pred hHHHHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCC---EE
Confidence 3445555566676 67889999988776555555544444443 222332233444443 34444445443 88
Q ss_pred EEcCCchhhHHH
Q 026634 218 MVGDSLKDDIDV 229 (235)
Q Consensus 218 ~iGDs~~~Di~~ 229 (235)
+.|+.. .|-..
T Consensus 116 l~G~qa-~D~~t 126 (260)
T COG2086 116 LTGKQA-IDGDT 126 (260)
T ss_pred EEeccc-ccCCc
Confidence 889887 66543
No 426
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=23.04 E-value=2.2e+02 Score=18.35 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~ 183 (235)
..+.+.+.+.|....+..+........+.+++|..
T Consensus 44 ~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~ 78 (86)
T PF08445_consen 44 AALARELLERGKTPFLYVDADNEASIRLYEKLGFR 78 (86)
T ss_dssp HHHHHHHHHTTSEEEEEEETT-HHHHHHHHHCT-E
T ss_pred HHHHHHHHhCCCcEEEEEECCCHHHHHHHHHcCCE
Confidence 46677888888888777766667778888999965
No 427
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=22.87 E-value=1.1e+02 Score=19.44 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 195 ~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
.-|-...++.+++++++++..++.|-+.-
T Consensus 25 ~apftaVlkfaAeeF~vp~~tsaiItndG 53 (76)
T PF03671_consen 25 EAPFTAVLKFAAEEFKVPPATSAIITNDG 53 (76)
T ss_dssp TSBHHHHHHHHHHHTTS-SSSEEEEESSS
T ss_pred CCchHHHHHHHHHHcCCCCceEEEEecCC
Confidence 45667889999999999999999885443
No 428
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.86 E-value=5.3e+02 Score=22.69 Aligned_cols=73 Identities=19% Similarity=0.036 Sum_probs=46.0
Q ss_pred cccccCHHHHHHHHHhCCCeEEEEeCCCh---hHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHc-CCCCCcE
Q 026634 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---EAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTW-EVQPNEV 216 (235)
Q Consensus 142 ~~~~~~~~~~l~~l~~~g~~i~i~Sn~~~---~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l-~~~~~~~ 216 (235)
.++.+...-++..|++.|-.+.+++.++. ..+...+...|+. |.. .+....+.+..+.+.+ +..| .
T Consensus 55 ~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~-------~~~~~~ey~~~~~~~l~~~~p--~ 125 (425)
T PRK05476 55 LHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAW-------KGETLEEYWECIERALDGHGP--N 125 (425)
T ss_pred EeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEec-------CCCCHHHHHHHHHHHhcCCCC--C
Confidence 45678889999999999999988885543 3445555666776 333 1222234444444444 4444 5
Q ss_pred EEEcCCc
Q 026634 217 MMVGDSL 223 (235)
Q Consensus 217 v~iGDs~ 223 (235)
+.++|+-
T Consensus 126 iiiDdGg 132 (425)
T PRK05476 126 MILDDGG 132 (425)
T ss_pred EEEeccc
Confidence 7777776
No 429
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=22.82 E-value=4.9e+02 Score=22.31 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=44.1
Q ss_pred cCHHH-HHHHHHhCCC-eEEEEeCCC------hhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcC-CCCCcE
Q 026634 146 PGTAQ-LCGFLDSKKI-RRGLITRNI------KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWE-VQPNEV 216 (235)
Q Consensus 146 ~~~~~-~l~~l~~~g~-~i~i~Sn~~------~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~-~~~~~~ 216 (235)
+|..+ +-+.+++.|. ++.|+|+.. ...+...++..|+.+ .++ +...+.|.-+.+.++++... ..++-+
T Consensus 16 ~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~-~~f--~~v~~np~~~~v~~~~~~~~~~~~D~I 92 (383)
T PRK09860 16 ADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFS-VIY--DGTQPNPTTENVAAGLKLLKENNCDSV 92 (383)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE-EEe--CCCCCCcCHHHHHHHHHHHHHcCCCEE
Confidence 44443 3355666674 666777542 123444455556541 111 12245677777777777664 367778
Q ss_pred EEEcCCchhhHH
Q 026634 217 MMVGDSLKDDID 228 (235)
Q Consensus 217 v~iGDs~~~Di~ 228 (235)
+.||-+---|..
T Consensus 93 iaiGGGS~iD~A 104 (383)
T PRK09860 93 ISLGGGSPHDCA 104 (383)
T ss_pred EEeCCchHHHHH
Confidence 889875425554
No 430
>PRK15482 transcriptional regulator MurR; Provisional
Probab=22.78 E-value=94 Score=25.26 Aligned_cols=32 Identities=6% Similarity=-0.169 Sum_probs=25.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~ 174 (235)
.-.+.+.++++.++++|.+++.+|+.....+.
T Consensus 193 g~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la 224 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGATVIAITSLADSPLR 224 (285)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchH
Confidence 34578889999999999999999987655443
No 431
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.77 E-value=1.9e+02 Score=24.19 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=43.3
Q ss_pred CHHHHHHHHHhCCCe-EEEEeCCChhHHHHHH-----hhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCc--EEE
Q 026634 147 GTAQLCGFLDSKKIR-RGLITRNIKEAVDLFH-----NRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNE--VMM 218 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~-i~i~Sn~~~~~~~~~~-----~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~--~v~ 218 (235)
.+.++++.++++|.+ +++++.++-...-.+. +..|++-+.+++... -....+-..+.+++|+.|++ +.+
T Consensus 104 i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~---LDs~R~r~~la~~l~v~~~~V~~~V 180 (321)
T PTZ00325 104 IVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT---LDVVRARKFVAEALGMNPYDVNVPV 180 (321)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh---HHHHHHHHHHHHHhCcChhheEEEE
Confidence 556778888888764 5555555555554444 445666555665421 22334566778899998875 445
Q ss_pred Ec
Q 026634 219 VG 220 (235)
Q Consensus 219 iG 220 (235)
+|
T Consensus 181 lG 182 (321)
T PTZ00325 181 VG 182 (321)
T ss_pred Ee
Confidence 55
No 432
>COG4889 Predicted helicase [General function prediction only]
Probab=22.67 E-value=2.6e+02 Score=27.48 Aligned_cols=49 Identities=6% Similarity=0.004 Sum_probs=33.2
Q ss_pred cccCHHHHHHHHHhC---CCeEEEEeCCChhHHHHHHhhcCce-EEEEEecCC
Q 026634 144 IMPGTAQLCGFLDSK---KIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREF 192 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~---g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~~ 192 (235)
+.......++.++.+ .-..+|.|....-......++.|++ ||.|+|.+.
T Consensus 261 ~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 261 VSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred CcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 344566666665432 3346777766666666677999999 999999763
No 433
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=22.61 E-value=4.2e+02 Score=22.62 Aligned_cols=81 Identities=14% Similarity=-0.050 Sum_probs=43.6
Q ss_pred ccCHHHHH-HHHHhCCCeEEEEeCCCh-------hHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcC-CCCCc
Q 026634 145 MPGTAQLC-GFLDSKKIRRGLITRNIK-------EAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWE-VQPNE 215 (235)
Q Consensus 145 ~~~~~~~l-~~l~~~g~~i~i~Sn~~~-------~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~-~~~~~ 215 (235)
-+|+.+-+ +.+++.|-++.|+|+... +.+...++..|+.+.. .+.....|.-+.+.++++.+. ..++-
T Consensus 13 G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~---~~~v~~~p~~~~v~~~~~~~~~~~~D~ 89 (382)
T cd08187 13 GKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVE---LGGVEPNPRLETVREGIELCKEEKVDF 89 (382)
T ss_pred CCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEE---ECCccCCCCHHHHHHHHHHHHHcCCCE
Confidence 34555433 444444678888876421 2344455555654211 122245566666666665543 35677
Q ss_pred EEEEcCCchhhHH
Q 026634 216 VMMVGDSLKDDID 228 (235)
Q Consensus 216 ~v~iGDs~~~Di~ 228 (235)
++.||=+---|..
T Consensus 90 IIaiGGGS~iD~a 102 (382)
T cd08187 90 ILAVGGGSVIDSA 102 (382)
T ss_pred EEEeCChHHHHHH
Confidence 8888865435554
No 434
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=22.30 E-value=1.1e+02 Score=25.53 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=20.9
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEe
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLIT 166 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~S 166 (235)
..+|+..++++.|+++|+++++..
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEe
Confidence 467899999999999999988754
No 435
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=22.29 E-value=55 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=17.8
Q ss_pred HHHHHHHH---cCCCCCcEEEEcCCc
Q 026634 201 PLLHICST---WEVQPNEVMMVGDSL 223 (235)
Q Consensus 201 ~~~~~~~~---l~~~~~~~v~iGDs~ 223 (235)
++..+.+. ++.++++++++|||.
T Consensus 55 a~~~l~~~~~~~~~d~~~i~l~G~SA 80 (211)
T PF07859_consen 55 AYRWLLKNADKLGIDPERIVLIGDSA 80 (211)
T ss_dssp HHHHHHHTHHHHTEEEEEEEEEEETH
T ss_pred ceeeeccccccccccccceEEeeccc
Confidence 34444444 789999999999998
No 436
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.18 E-value=3.5e+02 Score=21.36 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=29.8
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCC--ChhHHHHHHhhcC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRN--IKEAVDLFHNRFG 181 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~--~~~~~~~~~~~lg 181 (235)
...+...++++.+|+.|.+.+++=|- +-+.++.++....
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD 133 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVD 133 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCC
Confidence 35678889999999999999999874 4455666666654
No 437
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=22.13 E-value=4.1e+02 Score=21.19 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHhCC-CeEEEEeCCChhHHHHHHhhcCceEEEEEecCCCCCCCChH-HHHHHHHHcCCC
Q 026634 145 MPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPG-PLLHICSTWEVQ 212 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g-~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~-~~~~~~~~l~~~ 212 (235)
..++.+.++.+++.| ++-.-+||.....+..+++..+..++.+-.. .....+... .+...|++.|+.
T Consensus 126 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~-~n~~~~~~~~~~~~~~~~~gi~ 194 (285)
T cd06660 126 IEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVE-YNLLDRQAEEELLPYCREHGIG 194 (285)
T ss_pred HHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecc-cCcccCchHHHHHHHHHHcCcE
Confidence 457788899999998 6667788888777777776643334433221 111111112 456667777653
No 438
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.01 E-value=1.2e+02 Score=24.36 Aligned_cols=32 Identities=9% Similarity=-0.121 Sum_probs=26.4
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~ 175 (235)
-.|.+.+.++.++++|.+++.+|+++...+..
T Consensus 130 ~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~ 161 (257)
T cd05007 130 RTPYVLGALRYARARGALTIGIACNPGSPLLQ 161 (257)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCChhHH
Confidence 46789999999999999999999877655443
No 439
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.96 E-value=1.1e+02 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.7
Q ss_pred ccCHHHHHHHHHhCCCeEEEEeCCChh
Q 026634 145 MPGTAQLCGFLDSKKIRRGLITRNIKE 171 (235)
Q Consensus 145 ~~~~~~~l~~l~~~g~~i~i~Sn~~~~ 171 (235)
.++..++++.+++.|+++.+=||+.-.
T Consensus 85 ~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 85 QPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred cccHHHHHHHHHhCCceEEecCCCCcc
Confidence 568999999999999999999987543
No 440
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.90 E-value=4.3e+02 Score=21.33 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHH--cC--CCCCcEEEEcCC
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICST--WE--VQPNEVMMVGDS 222 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~--l~--~~~~~~v~iGDs 222 (235)
++.++......|.+++=++...-..+..+++.+.-. ..+|+-+|+.........|...-.- -| -.|+++++.--|
T Consensus 69 Vkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 466777778888888888877666666666665533 4554444433222222333222222 23 368888776544
No 441
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=21.85 E-value=3.4e+02 Score=22.90 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEE
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP 186 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~ 186 (235)
+.++..|+++|+.+.|.+ .....+..+++.+|+++..
T Consensus 17 k~~I~eL~~~GheV~it~-R~~~~~~~LL~~yg~~y~~ 53 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITA-RDKDETEELLDLYGIDYIV 53 (335)
T ss_pred HHHHHHHHhCCCEEEEEE-eccchHHHHHHHcCCCeEE
Confidence 466788899998777766 4456677788888876333
No 442
>PRK02947 hypothetical protein; Provisional
Probab=21.82 E-value=94 Score=24.83 Aligned_cols=26 Identities=8% Similarity=-0.092 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCC
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNI 169 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~ 169 (235)
-.+.+.++++.++++|.+++.+|+..
T Consensus 118 ~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 118 RNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 45778999999999999999999875
No 443
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.79 E-value=1.3e+02 Score=15.46 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=13.6
Q ss_pred CCCeEEEEeCCChhHHHHHH
Q 026634 158 KKIRRGLITRNIKEAVDLFH 177 (235)
Q Consensus 158 ~g~~i~i~Sn~~~~~~~~~~ 177 (235)
-..+|.|-||+..+.....+
T Consensus 3 g~LqI~ISTnG~sP~la~~i 22 (30)
T PF14824_consen 3 GPLQIAISTNGKSPRLARLI 22 (30)
T ss_dssp TTEEEEEEESSS-HHHHHHH
T ss_pred CCeEEEEECCCCChHHHHHH
Confidence 35688999998877655444
No 444
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=21.72 E-value=2.3e+02 Score=20.24 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEE
Q 026634 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP 186 (235)
Q Consensus 150 ~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~ 186 (235)
++.+.+++.|+.++-+|-.....+....+..++.|..
T Consensus 55 ~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~ 91 (154)
T PRK09437 55 DNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTL 91 (154)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 4445556667777666665555566666666665443
No 445
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.59 E-value=1.1e+02 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.4
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITR 167 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn 167 (235)
..+|+..++++.|+++|+++++.-+
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~ 92 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYIN 92 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4679999999999999999887653
No 446
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.51 E-value=86 Score=20.48 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.6
Q ss_pred HHHHcCCCCCcEEEEcCC
Q 026634 205 ICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iGDs 222 (235)
-++.+|+.|+++++|.|.
T Consensus 64 TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 64 TLQEAGLCPQETVFVQER 81 (82)
T ss_pred CHHHcCCCCCcEEEEecC
Confidence 677899999999999874
No 447
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=21.49 E-value=3.3e+02 Score=27.10 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCChh--HHHH--HHh----hcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEE
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNIKE--AVDL--FHN----RFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~~~--~~~~--~~~----~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 218 (235)
+..+.++.+.++|+++..+.-..-. .... .+. .-++.|-.+++-++ ..||...-..+.+++.|+. ++|
T Consensus 602 ~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flGli~~~d-~lr~~~~~~I~~l~~agi~---v~m 677 (1054)
T TIGR01657 602 DYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGFIVFEN-PLKPDTKEVIKELKRASIR---TVM 677 (1054)
T ss_pred hHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEEEEEEec-CCCccHHHHHHHHHHCCCe---EEE
Confidence 4455667777889987766522110 0000 000 11233444444332 2455555555566666765 455
Q ss_pred E-cCCchhhHHHHhh
Q 026634 219 V-GDSLKDDIDVVFN 232 (235)
Q Consensus 219 i-GDs~~~Di~~A~~ 232 (235)
| ||+..+=+.-|++
T Consensus 678 iTGD~~~TA~~iA~~ 692 (1054)
T TIGR01657 678 ITGDNPLTAVHVARE 692 (1054)
T ss_pred ECCCCHHHHHHHHHH
Confidence 5 8888555555543
No 448
>PLN02891 IMP cyclohydrolase
Probab=21.47 E-value=2.1e+02 Score=25.95 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=42.6
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---------EEEEEecCCCC----------CCCChHHHHH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---------FSPALSREFRP----------YKPDPGPLLH 204 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---------f~~i~~~~~~~----------~KP~~~~~~~ 204 (235)
-..|+.++.+.|.+.|+.++ .|++. ...++..|+. |..++.+.+.. .+.+-.-=.+
T Consensus 31 DKtgi~~fAk~L~~~gveIi-STgGT----ak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGILa~r~~~~h~~ 105 (547)
T PLN02891 31 DKTDLALLANGLQELGYTIV-STGGT----ASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPAVHGGILARRDQEHHME 105 (547)
T ss_pred cccCHHHHHHHHHHCCCEEE-EcchH----HHHHHHcCCceeeHHhccCCchhhCCcccccCchhhhhhhcCCCCHHHHH
Confidence 35799999999999998653 33332 3346777776 33344433211 1111122234
Q ss_pred HHHHcCCCCCcEEEEc
Q 026634 205 ICSTWEVQPNEVMMVG 220 (235)
Q Consensus 205 ~~~~l~~~~~~~v~iG 220 (235)
-++++|+.|=+.|+|-
T Consensus 106 ~l~~~~I~~IDlVvVN 121 (547)
T PLN02891 106 ALNEHGIGTIDVVVVN 121 (547)
T ss_pred HHHHcCCCceeeEEEe
Confidence 5678898888877763
No 449
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=21.42 E-value=1.8e+02 Score=20.18 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEE
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP 186 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~ 186 (235)
..+-+.|+++|..+.+.|+.. . +..++..|+.|..
T Consensus 16 lala~~L~~rGh~V~~~~~~~--~-~~~v~~~Gl~~~~ 50 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPD--F-RERVEAAGLEFVP 50 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGG--G-HHHHHHTT-EEEE
T ss_pred HHHHHHHhccCCeEEEeeccc--c-eecccccCceEEE
Confidence 366789999999999998753 2 3334888987555
No 450
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.36 E-value=1e+02 Score=25.49 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=24.0
Q ss_pred cccCHHHHHHHHHhCCCeEEEEeCCChhH
Q 026634 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEA 172 (235)
Q Consensus 144 ~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~ 172 (235)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 101 ~t~~~~~~~~~ak~~g~~vI~iT~~~~s~ 129 (321)
T PRK11543 101 GAKELDLIIPRLEDKSIALLAMTGKPTSP 129 (321)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 45778899999999999999999865443
No 451
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=21.20 E-value=1.1e+02 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCcEEEE
Q 026634 194 PYKPDPGPLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 194 ~~KP~~~~~~~~~~~l~~~~~~~v~i 219 (235)
.+++-.+++..+|++.|+.++.|.+.
T Consensus 19 pg~ti~d~L~~~~~kr~L~~~~~~V~ 44 (71)
T PF02196_consen 19 PGMTIRDALSKACKKRGLNPECCDVR 44 (71)
T ss_dssp TTSBHHHHHHHHHHTTT--CCCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 46667789999999999999999887
No 452
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=21.17 E-value=1.4e+02 Score=26.05 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=26.2
Q ss_pred hHHHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 199 PGPLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.+-..++++++|--.+-+++|||++ .|+..+-
T Consensus 208 ~~~Va~~Akk~gkGveaI~~vGDGy-ddLI~G~ 239 (505)
T PF10113_consen 208 MEEVAELAKKYGKGVEAIMHVGDGY-DDLITGL 239 (505)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCh-HHHHHHH
Confidence 3456778889999999999999999 8876553
No 453
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=20.95 E-value=1.2e+02 Score=26.36 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=22.0
Q ss_pred ChhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcC
Q 026634 169 IKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (235)
Q Consensus 169 ~~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGD 221 (235)
+...+.+++..+|..|+.. +|. =...+..+|++|+++||.+-
T Consensus 90 ~dp~vl~~La~lG~gfdca-------Sk~----E~~lvl~~gv~P~riIyanp 131 (448)
T KOG0622|consen 90 SDPKVLRLLASLGCGFDCA-------SKN----ELDLVLSLGVSPERIIYANP 131 (448)
T ss_pred CCHHHHHHHHHcCccceec-------ChH----HHHHHHhcCCChHHeEecCC
Confidence 3344555666666655543 221 12334456666666666643
No 454
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=20.88 E-value=1.9e+02 Score=23.80 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCceEEEEEe
Q 026634 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (235)
Q Consensus 148 ~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~ 189 (235)
..++++.++++|+++.+-|=+.......+++ +|+ +.+++
T Consensus 250 ~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~-~GV--dgIiT 288 (300)
T cd08612 250 RPSLFRHLQKRGIQVYGWVLNDEEEFERAFE-LGA--DGVMT 288 (300)
T ss_pred CHHHHHHHHHCCCEEEEeecCCHHHHHHHHh-cCC--CEEEe
Confidence 3578899999999999999777666665544 674 55554
No 455
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=20.85 E-value=11 Score=22.77 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcE
Q 026634 173 VDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (235)
Q Consensus 173 ~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 216 (235)
+..+.+.+|+.-..+...+.+...|.+..+..+++.+|++++..
T Consensus 15 ~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~v~~~~l 58 (64)
T PF12844_consen 15 QKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALGVSLDEL 58 (64)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhCCCHHHH
Confidence 34455566664111112234456899999999999999987654
No 456
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=20.70 E-value=1.6e+02 Score=27.49 Aligned_cols=88 Identities=15% Similarity=0.063 Sum_probs=57.5
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeCCChhHHHHHHhhcCce---EE--EEEecC-----------------CCCCCCChH
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FS--PALSRE-----------------FRPYKPDPG 200 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn~~~~~~~~~~~~lgl~---f~--~i~~~~-----------------~~~~KP~~~ 200 (235)
++..+..+.+++....|+.+.++|+........--.++|.. +. ...+.+ ++...-.|+
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 45778889999999999999999987666666666677665 11 122211 111112223
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 201 PLLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
--..+++.++-...-|-+-||+. ||-.+-+
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgv-ndapaLK 601 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGV-NDAPALK 601 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCc-ccchhhc
Confidence 33345566666777899999999 9976644
No 457
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.69 E-value=1.2e+02 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.6
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITR 167 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn 167 (235)
..+|+..++++.|+++|+++++..+
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 5789999999999999999987543
No 458
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.69 E-value=1.2e+02 Score=25.30 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.1
Q ss_pred ccccCHHHHHHHHHhCCCeEEEEeC
Q 026634 143 QIMPGTAQLCGFLDSKKIRRGLITR 167 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~~i~i~Sn 167 (235)
..+|+..++++.|+++|+++++..+
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 5789999999999999999988764
No 459
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=20.67 E-value=2.7e+02 Score=19.99 Aligned_cols=19 Identities=5% Similarity=0.113 Sum_probs=12.2
Q ss_pred HHHHHHHHcCCCCCcEEEE
Q 026634 201 PLLHICSTWEVQPNEVMMV 219 (235)
Q Consensus 201 ~~~~~~~~l~~~~~~~v~i 219 (235)
.|..+++.+++++++|.++
T Consensus 56 L~~dVLrsm~l~~~q~~~l 74 (132)
T PRK06100 56 LFERILKSMQLELSQARHI 74 (132)
T ss_pred HHHHHHHHcCCCHHHeeee
Confidence 6666666666666666544
No 460
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.65 E-value=1.9e+02 Score=21.59 Aligned_cols=35 Identities=3% Similarity=-0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCChhH-HHHHHhhcCce
Q 026634 149 AQLCGFLDSKKIRRGLITRNIKEA-VDLFHNRFGIT 183 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~~~-~~~~~~~lgl~ 183 (235)
...|..++..+-++++++..+... ...+.+.+|+.
T Consensus 67 l~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~ 102 (176)
T PF06506_consen 67 LRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD 102 (176)
T ss_dssp HHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E
T ss_pred HHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc
Confidence 344444455577888887544332 56666777776
No 461
>PRK01441 Maf-like protein; Reviewed
Probab=20.57 E-value=2.2e+02 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=21.9
Q ss_pred CeEEEEeCCChhHHHHHHhhcCceEEEEEecC
Q 026634 160 IRRGLITRNIKEAVDLFHNRFGITFSPALSRE 191 (235)
Q Consensus 160 ~~i~i~Sn~~~~~~~~~~~~lgl~f~~i~~~~ 191 (235)
.++++.|++++. ..+++.+|+.|..++..+
T Consensus 5 ~~iILAS~SprR--~elL~~~Gi~f~~v~~~~ 34 (207)
T PRK01441 5 PKLVLASGSPRR--VELLNQAGIEPDRLMPAD 34 (207)
T ss_pred CcEEEeCCCHHH--HHHHHhcCCCCeEEeCCC
Confidence 568899988655 677899999865555543
No 462
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.51 E-value=1.1e+02 Score=25.82 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=29.4
Q ss_pred HHHHHHhhcCce---EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEE-EEcCCc
Q 026634 172 AVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM-MVGDSL 223 (235)
Q Consensus 172 ~~~~~~~~lgl~---f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v-~iGDs~ 223 (235)
.+..++++.|+. ++.++. ..+...+++.+.+++|++++++. .+-+..
T Consensus 247 ~i~~~L~~~gl~~~did~~v~-----HQ~~~~i~~~i~~~Lgl~~ek~~~~~l~~~ 297 (353)
T PRK12880 247 SFKEILEFSKVDEKDIAFHLF-----HQSNAYLVDCIKEELKLNDDKVPNFIMEKY 297 (353)
T ss_pred HHHHHHHHcCCCHHHCCEEEE-----CCCCHHHHHHHHHHhCCCHHHhhhhhHHhh
Confidence 345666667765 555433 34555778888888888887775 333444
No 463
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=20.45 E-value=3.2e+02 Score=22.46 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=18.4
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHcCCC-CCcEEEEc
Q 026634 184 FSPALSREFRPYKPDPGPLLHICSTWEVQ-PNEVMMVG 220 (235)
Q Consensus 184 f~~i~~~~~~~~KP~~~~~~~~~~~l~~~-~~~~v~iG 220 (235)
++.+++..+... .....++++.|+. |+++-+||
T Consensus 238 ~~ai~~~nD~~A----~g~~~al~~~G~~vP~disVig 271 (343)
T PRK10727 238 FTAVACYNDSMA----AGAMGVLNDNGIDVPGEISLIG 271 (343)
T ss_pred CCEEEEcCcHHH----HHHHHHHHHcCCCCCcceeEEe
Confidence 455555433211 3456677778874 66655554
No 464
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=20.45 E-value=4.3e+02 Score=20.81 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHhCCCeEEEEeCCC-------hhHHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 153 GFLDSKKIRRGLITRNI-------KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 153 ~~l~~~g~~i~i~Sn~~-------~~~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
++....++.+.++.++. ...+...++.+. .|+++-..-...-|-|..-+++++.-+++ ++.|||.+
T Consensus 25 ErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~--pDfvi~isPNpaaPGP~kARE~l~~s~~P---aiiigDaP 97 (277)
T COG1927 25 ERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFN--PDFVIYISPNPAAPGPKKAREILSDSDVP---AIIIGDAP 97 (277)
T ss_pred hhcccCCceEEEeccccccChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCCchHHHHHHhhcCCC---EEEecCCc
No 465
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=20.43 E-value=4.1e+02 Score=21.00 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=24.3
Q ss_pred CHHHHHHHHHhCCCeEEEEeCC-ChhHHHHHHhhcCce
Q 026634 147 GTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFGIT 183 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~-~~~~~~~~~~~lgl~ 183 (235)
.+.++.+.++++|+++++.... +...++.+.+..|+.
T Consensus 187 ~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~ 224 (256)
T PF01297_consen 187 DLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVK 224 (256)
T ss_dssp HHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-E
T ss_pred HHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCc
Confidence 4567778888999988887654 444566666778865
No 466
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=20.09 E-value=3.5e+02 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=17.4
Q ss_pred HcCCCCCcEEEEcCCchhhHHH
Q 026634 208 TWEVQPNEVMMVGDSLKDDIDV 229 (235)
Q Consensus 208 ~l~~~~~~~v~iGDs~~~Di~~ 229 (235)
++|.+|+++++.|||....+.+
T Consensus 146 ~~g~dp~~i~v~GdSAGG~La~ 167 (312)
T COG0657 146 ELGIDPSRIAVAGDSAGGHLAL 167 (312)
T ss_pred hhCCCccceEEEecCcccHHHH
Confidence 4689999999999999444443
No 467
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.07 E-value=6.7e+02 Score=22.84 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhCCCeEEEEeCCC-hhHHHHHHhhcCceEEEE-EecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCc
Q 026634 147 GTAQLCGFLDSKKIRRGLITRNI-KEAVDLFHNRFGITFSPA-LSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (235)
Q Consensus 147 ~~~~~l~~l~~~g~~i~i~Sn~~-~~~~~~~~~~lgl~f~~i-~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~ 223 (235)
++...|..++..+-++++++-.+ ...+..+.+.++++++.+ +.. ..+......-+++.|++ ++|||..
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~-----~~e~~~~v~~lk~~G~~----~vvG~~~ 164 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVT-----EEDARGQINELKANGIE----AVVGAGL 164 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecC-----HHHHHHHHHHHHHCCCC----EEEcCch
Confidence 34455555566677888888543 344566667778773332 111 11112234445556776 6789987
No 468
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.03 E-value=4.8e+02 Score=21.11 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCh--h---HHHHHHhhcCceEEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCC
Q 026634 149 AQLCGFLDSKKIRRGLITRNIK--E---AVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (235)
Q Consensus 149 ~~~l~~l~~~g~~i~i~Sn~~~--~---~~~~~~~~lgl~f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs 222 (235)
..+.+.+++.|+++..+++... + .....++..+ .+.++...... ..-+.+.++..+ ..+++|+|-
T Consensus 43 ~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~vV~D~y~~----~~~~~~~~k~~~---~~l~~iDD~ 112 (279)
T TIGR03590 43 GDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEK--FDILIVDHYGL----DADWEKLIKEFG---RKILVIDDL 112 (279)
T ss_pred HHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcC--CCEEEEcCCCC----CHHHHHHHHHhC---CeEEEEecC
Confidence 3456778888888888876432 1 1223333333 34444432211 123555565543 267888885
No 469
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.03 E-value=90 Score=19.34 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCCCcEEEEcCCchhhHHHHh
Q 026634 202 LLHICSTWEVQPNEVMMVGDSLKDDIDVVF 231 (235)
Q Consensus 202 ~~~~~~~l~~~~~~~v~iGDs~~~Di~~A~ 231 (235)
.+..++++|+ ++++||.. -||++-.
T Consensus 7 VqQlLK~~G~----ivyfg~r~-~~iemm~ 31 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRL-YDIEMMQ 31 (68)
T ss_pred HHHHHHHCCe----eeecCCHH-HHHHHHH
Confidence 4667788886 58999999 9988754
No 470
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.01 E-value=3e+02 Score=22.62 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=25.5
Q ss_pred CCChhHHHHHHhhcCce-EEEEEecCCCCCCCChHHHHHHHHHcCCCCCcEEEEcCCchhhH
Q 026634 167 RNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDI 227 (235)
Q Consensus 167 n~~~~~~~~~~~~lgl~-f~~i~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~iGDs~~~Di 227 (235)
.+-...+...++..|+. .|. -.|.-.-.+..++++.-....++.+||..+--+
T Consensus 72 HGv~~~~~~~l~~~g~~viDa--------TCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv 125 (281)
T PF02401_consen 72 HGVPPEVYEELKERGLEVIDA--------TCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEV 125 (281)
T ss_dssp T---HHHHHHHHHTTEEEEE-----------HHHHHHHHHHHHHHHCT-EEEEES-TT-HHH
T ss_pred CCCCHHHHHHHHHcCCEEEEC--------CChhHHHHHHHHHHHHhcCCEEEEECCCCCceE
Confidence 34445555666666665 444 234444455555555555667888888663333
No 471
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=20.00 E-value=1.3e+02 Score=24.70 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=22.9
Q ss_pred ccccCHHHHHHHHHhCCC-eEEEEeCCC
Q 026634 143 QIMPGTAQLCGFLDSKKI-RRGLITRNI 169 (235)
Q Consensus 143 ~~~~~~~~~l~~l~~~g~-~i~i~Sn~~ 169 (235)
.+.+++.++++.+++.|+ .+.+.||+.
T Consensus 68 ll~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 68 LLRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred ccccCHHHHHHHHHhCCCceEEEEcCch
Confidence 456788899999999998 899999885
Done!