BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026635
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 29 MKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 88
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D Y++K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 89 AMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYF 148
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PSL+ T+ G + W ++
Sbjct: 149 LHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLALYTVTG-QSWPESLAQ 207
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 208 QTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIREKYKHSKYHSVSLLNPPETL 259
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 26 MKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 85
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D Y++K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 86 AMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYF 145
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PSL+ T+ G + W ++
Sbjct: 146 LHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLALYTVTG-QSWPESLAQ 204
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 205 QTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIREKYKHSKYHSVSLLNPPETL 256
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 26 MKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 85
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D Y++K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 86 AMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYF 145
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PSL+ T+ G + W ++
Sbjct: 146 LHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLALYTVTG-QSWPESLAQ 204
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 205 QTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIREKYKHSKYHSVSLLNPPETL 256
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLIR 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 209 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 29 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 88
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 89 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 148
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 149 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 207
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 208 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 259
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 26 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 85
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 86 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 145
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 146 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 204
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 205 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 256
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 27 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 86
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 87 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 146
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 147 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 205
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 206 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 257
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 33 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 92
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 93 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 152
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 153 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 211
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 212 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 263
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 28 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 87
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 88 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 147
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 148 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 206
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 207 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 258
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 26 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 85
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 86 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 145
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 146 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 204
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 205 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 256
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 24 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 83
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 84 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 143
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 144 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 202
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 203 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 254
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 28 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 87
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 88 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 147
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 148 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIR 206
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ KA + KY SK+ +S P + L
Sbjct: 207 KTGYTLESLKPC---LMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 258
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLVQ 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ +A + KY SK+ +S P + L
Sbjct: 209 KTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLVQ 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ +A + KY SK+ +S P + L
Sbjct: 209 KTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLVQ 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ +A + KY SK+ +S P + L
Sbjct: 209 KTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLVQ 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ +A + KY SK+ +S P + L
Sbjct: 209 KTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLVQ 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ +A + KY SK+ +S P + L
Sbjct: 209 KTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLVQ 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L C ++ HQ +A + KY SK+ +S P + L
Sbjct: 209 KTGYTLETLKPC---LLDLHQTYLRAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 127/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLIR 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + C M+ HQ KA + KY SK+ +S P + L
Sbjct: 209 KTGYTLETSKPC---MLDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
M +Q DI MRAIL+DWL+EV +++ L +ETL L++N IDRF
Sbjct: 30 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 89
Query: 61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
AMLLA K+EE+ P V + + I+D YT+K+VL ME L+L L F+++ PT F+ Q F
Sbjct: 90 AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 149
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
L ++ K++ L+ FL ELSL++ + LK+ PS++ T+ G + W ++
Sbjct: 150 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTG-QSWPESLIR 208
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
+GY+ + L +++ HQ KA + KY SK+ +S P + L
Sbjct: 209 KTGYTLESL---KPMLLDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 260
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 7/221 (3%)
Query: 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAMLLA 65
++ MRAILIDWL++V KF L+ ET+++++++IDRF AM +A
Sbjct: 32 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIA 91
Query: 66 CKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQS 125
KYEE+ P +GD ++D YT+ ++ +ME +L L F + P P F++R K +
Sbjct: 92 SKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEV 151
Query: 126 DKKLQLLSFFLIELSLVEYEMLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQWHSGYSED 185
D + L+ +L+EL++++Y+M+ F PS + I +W+ T Q + Y+E+
Sbjct: 152 DVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLA-LKILDNGEWTPTLQHYLSYTEE 210
Query: 186 QLLEC----ATLMIGFHQKAATGKLTGVHRKYCTSKFGYIS 222
LL A ++ +Q T +T V KY TSK IS
Sbjct: 211 SLLPVMQHLAKNVVMVNQ-GLTKHMT-VKNKYATSKHAKIS 249
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 5/220 (2%)
Query: 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAMLLA 65
++ MRAILIDWL++V KF L+ ET+++++++IDRF AM +A
Sbjct: 30 EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIA 89
Query: 66 CKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQS 125
KYEE+ P +GD ++D YT+ ++ +ME +L L F + P P F++R K +
Sbjct: 90 SKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEV 149
Query: 126 DKKLQLLSFFLIELSLVEYEMLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQWHSGYSED 185
D + L+ +L+EL++++Y+M+ F PS + I +W+ T Q + Y+E+
Sbjct: 150 DVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLA-LKILDNGEWTPTLQHYLSYTEE 208
Query: 186 QLLECATLM---IGFHQKAATGKLTGVHRKYCTSKFGYIS 222
LL + + + T +T V KY TSK IS
Sbjct: 209 SLLPVMQHLAKNVVMVNQGLTKHMT-VKNKYATSKHAKIS 247
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 20/203 (9%)
Query: 7 INEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXX-XXAMLLA 65
+ KMRAIL+DWL+EV + + L ET +L+ + DR+ ++ +A
Sbjct: 45 LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIA 104
Query: 66 CKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAA-- 123
K EE+ P + ++D A + E+L ME +++ L++ +S T ++ +++ A
Sbjct: 105 AKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164
Query: 124 ---------QSDKKLQLLSFFLIELSLVEYEMLKFTPSLLXXXXXXXXQCTIYGFKQWSK 174
Q +++ + L++L +++ + L+F +L +Y F S+
Sbjct: 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAAS-------ALYHFSS-SE 216
Query: 175 TCQWHSGYSEDQLLECATLMIGF 197
Q SGY + C M+ F
Sbjct: 217 LMQKVSGYQWCDIENCVKWMVPF 239
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAML 63
Q ++ MR I+ W++EV ++ E L++N +DRF M
Sbjct: 49 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 108
Query: 64 LACKYEEVSVPVVGD-LILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL-K 121
+A K +E ++P+ + L + +D + +E+L+ME L++N L++N++ TP+ FI+ FL K
Sbjct: 109 VASKMKE-TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167
Query: 122 AAQSDKKLQLL 132
++++ Q++
Sbjct: 168 MPEAEENKQII 178
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 4/155 (2%)
Query: 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAML 63
Q +I MR +L W++EV ++ E L++N +DR+ ML
Sbjct: 63 QREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCML 122
Query: 64 LACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAA 123
LA K E + + L + +D A + +++ + E L+L L+++++ + F+ L
Sbjct: 123 LASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRL 182
Query: 124 QSDKKLQLL----SFFLIELSLVEYEMLKFTPSLL 154
+ Q L + + L +Y + PS++
Sbjct: 183 SLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMI 217
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAML 63
Q ++ MR I+ W++EV ++ E L++N +DRF M
Sbjct: 35 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 94
Query: 64 LACKYEEVSVPVVGD-LILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL-K 121
+A K +E ++P+ + L + +D + +E+L+ME L++N L++N++ TP+ FI+ FL K
Sbjct: 95 VASKMKE-TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 153
Query: 122 AAQSDKKLQLL 132
++++ Q++
Sbjct: 154 MPEAEENKQII 164
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 16/151 (10%)
Query: 19 LIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAMLLACKYEEVSVPVVGD 78
+ +V + L +TL I RF + LA K EE D
Sbjct: 48 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKC-KD 106
Query: 79 LI-----LISDKAY------TRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDK 127
+I L++D + ++EV+ +E ++L T++F++ V PY F+ ++ K + DK
Sbjct: 107 IIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK 166
Query: 128 ----KLQLLSFFLIELSLVEYEMLKFTPSLL 154
KL +++ + SL L++ P ++
Sbjct: 167 NKIQKLVQMAWTFVNDSLCTTLSLQWEPEII 197
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAML 63
Q ++ R IL+ W+ + + F+L LS++++DR+ +L
Sbjct: 23 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 82
Query: 64 LACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFN 106
+ K V V L +S +T E++ E +L L+++
Sbjct: 83 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 125
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXXAML 63
Q ++ R IL+ W+ + + F+L LS++++DR+ +L
Sbjct: 44 QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVL 103
Query: 64 LACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFN 106
+ K V V L +S +T E++ E +L L+++
Sbjct: 104 IGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 146
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
pdb|2IVX|B Chain B, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution
(Casp Target)
Length = 257
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 90 KEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSL 141
+E++ +E++ML TL F +++ P+ + + + ++ K L S+F+ SL
Sbjct: 124 RELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSL 175
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 95 MESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSL-VEYEMLKFTPSL 153
+ES++L TL F +++ P+ + + + ++ K L S+F+ SL + L++TP +
Sbjct: 136 LESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPV 195
Query: 154 L 154
+
Sbjct: 196 V 196
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 90 KEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSL-VEYEMLK 148
++++ +ES++L TL F +++ P+ + + + ++ K L S+F+ SL + L+
Sbjct: 132 QDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQ 191
Query: 149 FTPSLL 154
+TP ++
Sbjct: 192 YTPPVV 197
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 95 MESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSL-VEYEMLKFTPSL 153
+ES++L TL F +++ P+ + + + ++ K L S+F+ SL + L++TP +
Sbjct: 136 LESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPV 195
Query: 154 L 154
+
Sbjct: 196 V 196
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 90 KEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSL-VEYEMLK 148
++++ +ES++L TL F +++ P+ + + + ++ K L S+F+ SL + L+
Sbjct: 128 QDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQ 187
Query: 149 FTPSLL 154
+TP ++
Sbjct: 188 YTPPVV 193
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 95 MESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSL-VEYEMLKFTPSL 153
+ES++L TL F +++ P+ + + + ++ K L S+F+ SL + L++TP +
Sbjct: 136 LESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPV 195
Query: 154 L 154
+
Sbjct: 196 V 196
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 64 LACKYEE--VSVP-VVGDL---ILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQ 117
LACK +E VS P VG+L L +KA +++LE E L++ L F++ V PY +
Sbjct: 121 LACKVDEFNVSSPQFVGNLRESPLGQEKAL--EQILEYELLLIQQLNFHLIVHNPYRPFE 178
Query: 118 RFL 120
FL
Sbjct: 179 GFL 181
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 64 LACKYEE--VSVP-VVGDL---ILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQ 117
LACK +E VS P VG+L L +KA +++LE E L++ L F++ V PY +
Sbjct: 111 LACKVDEFNVSSPQFVGNLRESPLGQEKAL--EQILEYELLLIQQLNFHLIVHNPYRPFE 168
Query: 118 RFL 120
FL
Sbjct: 169 GFL 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,529,504
Number of Sequences: 62578
Number of extensions: 171022
Number of successful extensions: 580
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 42
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)