Query 026635
Match_columns 235
No_of_seqs 152 out of 1485
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 1.9E-53 6.5E-58 353.8 24.0 229 1-230 28-258 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 1.2E-51 4.1E-56 344.4 23.6 227 1-229 28-256 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 1E-45 3.5E-50 306.8 22.7 204 3-206 42-254 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 2.3E-45 7.7E-50 304.2 22.1 200 3-202 43-250 (254)
5 1f5q_B Gamma herpesvirus cycli 100.0 3.4E-45 1.2E-49 301.7 18.3 198 2-202 39-244 (252)
6 3g33_B CCND3 protein; Ser/Thr 100.0 1.7E-44 5.8E-49 305.9 21.9 200 3-202 62-269 (306)
7 1w98_B Cyclin E, G1/S-specific 100.0 2.3E-44 7.7E-49 302.3 20.9 218 1-227 39-271 (283)
8 2w96_A G1/S-specific cyclin-D1 100.0 3.2E-43 1.1E-47 293.9 22.4 201 3-203 48-260 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 3.1E-38 1E-42 261.9 20.4 204 7-214 26-253 (257)
10 3rgf_B Cyclin-C; protein kinas 100.0 1E-37 3.6E-42 262.0 20.4 205 9-217 40-263 (285)
11 2i53_A Cyclin K; cell cycle, t 100.0 1.1E-37 3.9E-42 258.6 20.0 199 4-203 33-254 (258)
12 1zp2_A RNA polymerase II holoe 100.0 9.6E-37 3.3E-41 249.7 18.1 193 5-202 22-222 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 2.2E-36 7.4E-41 260.9 13.0 201 7-211 33-257 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1.7E-33 5.7E-38 240.1 21.8 202 10-212 55-276 (323)
15 1c9b_A General transcription f 100.0 2.4E-30 8.1E-35 207.9 20.4 187 10-200 3-189 (207)
16 1ais_B TFB TFIIB, protein (tra 100.0 1.2E-26 4E-31 185.3 20.7 186 10-199 7-194 (200)
17 3k7a_M Transcription initiatio 99.9 2.9E-23 1E-27 178.3 6.1 183 13-199 127-321 (345)
18 4bbr_M Transcription initiatio 99.8 2E-18 6.7E-23 147.9 9.5 185 13-201 127-323 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.6 6.1E-07 2.1E-11 74.0 11.3 107 14-123 76-185 (293)
20 1ais_B TFB TFIIB, protein (tra 98.0 4.1E-05 1.4E-09 60.1 9.7 90 16-108 109-198 (200)
21 1c9b_A General transcription f 97.2 0.0026 9E-08 49.9 10.2 87 112-199 8-94 (207)
22 4bbr_M Transcription initiatio 95.9 0.055 1.9E-06 45.9 9.9 91 108-199 125-215 (345)
23 1zp2_A RNA polymerase II holoe 95.9 0.069 2.4E-06 42.5 10.1 87 112-199 31-126 (235)
24 2b9r_A Human cyclin B1; cell c 95.3 0.15 5.2E-06 41.5 10.2 87 113-199 42-130 (269)
25 3k7a_M Transcription initiatio 94.8 0.029 9.8E-07 47.6 4.6 89 110-199 127-215 (345)
26 3rgf_B Cyclin-C; protein kinas 94.6 0.27 9.2E-06 40.4 10.1 87 113-199 47-149 (285)
27 2cch_B Cyclin A2, cyclin-A; co 94.6 0.17 6E-06 40.9 8.7 103 113-215 43-148 (260)
28 2f2c_A Cyclin homolog, V-cycli 94.6 0.27 9.3E-06 39.6 9.9 87 113-199 56-144 (254)
29 2w96_A G1/S-specific cyclin-D1 94.5 0.32 1.1E-05 39.5 10.2 86 114-199 62-149 (271)
30 1g3n_C V-cyclin; cyclin-depend 94.4 0.23 7.9E-06 40.1 9.1 87 113-199 55-143 (257)
31 3g33_B CCND3 protein; Ser/Thr 93.8 0.41 1.4E-05 39.7 9.6 87 113-199 75-163 (306)
32 2i53_A Cyclin K; cell cycle, t 93.6 0.26 8.8E-06 39.6 7.9 89 16-104 152-250 (258)
33 1w98_B Cyclin E, G1/S-specific 93.5 0.56 1.9E-05 38.4 9.9 87 113-199 54-143 (283)
34 2pmi_B PHO85 cyclin PHO80, ami 93.3 0.83 2.8E-05 37.5 10.3 91 109-199 74-167 (293)
35 2ivx_A Cyclin-T2; transcriptio 92.6 1.1 3.7E-05 35.9 10.2 87 112-199 34-138 (257)
36 1jkw_A Cyclin H; cell cycle, c 92.3 1.2 4.3E-05 37.1 10.5 85 114-199 62-155 (323)
37 3h4c_A Transcription factor TF 91.3 4.1 0.00014 31.5 14.8 146 14-163 14-168 (260)
38 1f5q_B Gamma herpesvirus cycli 89.0 2.9 9.8E-05 33.5 9.4 87 113-199 53-141 (252)
39 3m03_A ORC6, origin recognitio 88.5 4.2 0.00014 27.4 9.2 79 19-102 6-90 (95)
40 2pk2_A Cyclin-T1, protein TAT; 87.7 0.64 2.2E-05 39.5 4.9 57 112-168 41-97 (358)
41 2qdj_A Retinoblastoma-associat 77.7 7.2 0.00025 32.2 7.2 66 19-84 6-74 (304)
42 2wh0_Q Pkcev3, protein kinase 54.1 11 0.00038 18.8 2.3 18 89-106 12-29 (31)
43 1hji_B NUN-protein; bacterioph 45.8 24 0.00083 16.9 2.6 23 5-27 2-24 (26)
44 2p1m_A SKP1-like protein 1A; F 40.4 45 0.0015 24.3 4.9 37 55-92 112-148 (160)
45 2r7g_A PP110, retinoblastoma-a 40.0 82 0.0028 26.4 6.9 68 17-85 220-290 (347)
46 3v7d_A Suppressor of kinetocho 39.5 56 0.0019 24.1 5.4 37 55-92 120-156 (169)
47 3o0g_D Cyclin-dependent kinase 39.0 19 0.00065 25.7 2.4 52 49-105 73-126 (149)
48 2r7g_A PP110, retinoblastoma-a 38.0 1.8E+02 0.0061 24.3 11.8 116 89-217 168-335 (347)
49 2ast_A S-phase kinase-associat 36.3 73 0.0025 23.1 5.5 37 55-92 113-149 (159)
50 1unl_D Cyclin-dependent kinase 33.1 26 0.00088 26.3 2.4 69 49-122 118-190 (208)
51 1dlw_A Hemoglobin; oxygen stor 31.7 95 0.0033 20.9 5.3 38 6-43 72-109 (116)
52 2rn7_A IS629 ORFA; helix, all 31.6 1.1E+02 0.0038 20.1 5.9 41 1-41 1-55 (108)
53 3m03_A ORC6, origin recognitio 31.5 1.2E+02 0.004 20.3 6.0 53 147-200 41-93 (95)
54 1fs1_B SKP1, cyclin A/CDK2-ass 29.6 96 0.0033 21.9 5.1 19 5-23 42-60 (141)
55 2bmm_A Thermostable hemoglobin 29.5 1.3E+02 0.0043 20.5 5.6 38 6-43 77-114 (123)
56 2bkm_A Truncated hemoglobin fr 29.0 1.4E+02 0.0047 20.5 5.8 38 6-43 79-116 (128)
57 2ksc_A Cyanoglobin; hemeprotei 28.4 72 0.0025 21.9 4.2 38 4-41 75-112 (123)
58 4elj_A Retinoblastoma-associat 27.8 1.4E+02 0.0046 27.4 6.7 65 18-84 7-76 (656)
59 4ell_A Retinoblastoma-associat 27.7 1.8E+02 0.0061 24.9 7.1 69 15-84 282-353 (411)
60 1tc3_C Protein (TC3 transposas 26.1 81 0.0028 16.7 5.2 33 5-37 4-42 (51)
61 1ux8_A YJBI protein; oxygen st 24.2 1.7E+02 0.0057 20.2 5.5 38 6-43 80-117 (132)
62 3aq9_A Group 1 truncated hemog 22.4 1.6E+02 0.0053 19.9 5.0 37 6-42 77-113 (121)
63 4elj_A Retinoblastoma-associat 21.7 2.4E+02 0.0082 25.8 7.1 70 15-85 527-599 (656)
64 2xyk_A 2-ON-2 hemoglobin; oxyg 21.7 2.1E+02 0.0071 19.9 5.6 38 6-43 84-121 (133)
65 2qrw_A Hemoglobin-like protein 21.4 1.7E+02 0.0059 19.9 5.1 38 6-43 79-119 (128)
66 2lnh_A N-WAsp, neural wiskott- 20.2 60 0.002 20.0 2.1 35 168-203 23-59 (65)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.9e-53 Score=353.82 Aligned_cols=229 Identities=41% Similarity=0.661 Sum_probs=219.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHH
Q 026635 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLI 80 (235)
Q Consensus 1 ~~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~ 80 (235)
|++|++|++.+|..+++||.+++..++++++|+++|++|+|||++..++++.++|++|+||++||||+||..+|++++++
T Consensus 28 ~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~ 107 (260)
T 2cch_B 28 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFV 107 (260)
T ss_dssp GGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcch-HHHHHHHHHHHHHhcchh-ccCCCHHHHHHHH
Q 026635 81 LISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDK-KLQLLSFFLIELSLVEYE-MLKFTPSLLAAAA 158 (235)
Q Consensus 81 ~~~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-~~~~~a~~ll~~~l~~~~-~~~~~ps~iA~a~ 158 (235)
.++++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.+. ++..+|+++++.++.+.. +++|+||.||+||
T Consensus 108 ~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAa 187 (260)
T 2cch_B 108 YITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAA 187 (260)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHH
T ss_pred HHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 788999999999999999 9999999999999
Q ss_pred HHHHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHHhhCCCCCCccccCCCcccc
Q 026635 159 IYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230 (235)
Q Consensus 159 l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~~~~~~i~~ky~~~~~~~vs~~~~~~~~ 230 (235)
+++|+..++. +.|...+..++|+++++|.+|++.|.+++.+....+.++|++||++++|+.||.++||+.+
T Consensus 188 i~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~~~~~~vs~~~~~~~~ 258 (260)
T 2cch_B 188 FHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 258 (260)
T ss_dssp HHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHHTSGGGTTGGGSCCCSCC
T ss_pred HHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHCcccccceeCCCCcccC
Confidence 9999988875 7899999999999999999999999999988887888999999999999999999999865
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.2e-51 Score=344.42 Aligned_cols=227 Identities=35% Similarity=0.603 Sum_probs=215.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHH
Q 026635 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLI 80 (235)
Q Consensus 1 ~~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~ 80 (235)
|++| ++++++|..+++||.+++..++++++|+++|++|+|||++..++++.++|++|+||++||||+||..+|++++++
T Consensus 28 ~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~ 106 (269)
T 2b9r_A 28 LLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFA 106 (269)
T ss_dssp TSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred ccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHH
Confidence 4567 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHH
Q 026635 81 LISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIY 160 (235)
Q Consensus 81 ~~~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~ 160 (235)
.++++.|++++|.+||+.||+.|+|+++.|||++|+.+|+...+.+.+...+|+++++.++.+..+++|+||.||+||++
T Consensus 107 ~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~ 186 (269)
T 2b9r_A 107 FVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFS 186 (269)
T ss_dssp HHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCC--CChhHHHHhhCCCCCCccccCCCccc
Q 026635 161 AAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAAT--GKLTGVHRKYCTSKFGYISKSEPAQF 229 (235)
Q Consensus 161 la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~--~~~~~i~~ky~~~~~~~vs~~~~~~~ 229 (235)
+|+..++. +.|.+.+..++|+++++|.+|++.|.+++..... .+.++|++||++++|++||.++|++-
T Consensus 187 lA~~~l~~-~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~Ky~~~~~~~vs~~~~~~~ 256 (269)
T 2b9r_A 187 LALKILDN-GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNS 256 (269)
T ss_dssp HHHHHHTC-CCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHHHTTSGGGTTGGGSSCCSG
T ss_pred HHHHHhCC-CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhcchhhCcccCCCCCCh
Confidence 99988765 5899999999999999999999999999876544 47899999999999999999998763
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-45 Score=306.76 Aligned_cols=204 Identities=18% Similarity=0.198 Sum_probs=190.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHh
Q 026635 3 QQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILI 82 (235)
Q Consensus 3 ~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~ 82 (235)
.|++|++++|..+++||.+++..++++++|+++|++|+|||++..++++.++|++|+||++||||+||..+|++++++.+
T Consensus 42 ~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 121 (257)
T 1g3n_C 42 FQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYA 121 (257)
T ss_dssp HTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchH----HHHHHHHHHHHHhcchhccCCCHHHHHHHH
Q 026635 83 SDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKK----LQLLSFFLIELSLVEYEMLKFTPSLLAAAA 158 (235)
Q Consensus 83 ~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~----~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~ 158 (235)
+++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+.+ +...|.++++.++.++.+++|+||.||+||
T Consensus 122 ~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAa 201 (257)
T 1g3n_C 122 AADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAG 201 (257)
T ss_dssp TTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999876543 357799999999999999999999999999
Q ss_pred HHHHHHHhcCC-----CCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCCh
Q 026635 159 IYAAQCTIYGF-----KQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKL 206 (235)
Q Consensus 159 l~la~~~~~~~-----~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~~~~ 206 (235)
+++|+..++.. +.|...+..++|+++++|.+|++.|.+++.+.....+
T Consensus 202 i~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~~~l 254 (257)
T 1g3n_C 202 CALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDLRIL 254 (257)
T ss_dssp HHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCHHhh
Confidence 99998887632 5799999999999999999999999999887665543
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=2.3e-45 Score=304.20 Aligned_cols=200 Identities=20% Similarity=0.287 Sum_probs=183.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHh
Q 026635 3 QQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILI 82 (235)
Q Consensus 3 ~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~ 82 (235)
.|+++++++|..+++||.+++..++++++|+++|++|+|||++..++++.++|++|+||++||||+||..+|++++++.+
T Consensus 43 ~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~ 122 (254)
T 2f2c_A 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYL 122 (254)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTT
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchH----HHHHHHHHHHHHhcchhccCCCHHHHHHHH
Q 026635 83 SDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKK----LQLLSFFLIELSLVEYEMLKFTPSLLAAAA 158 (235)
Q Consensus 83 ~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~----~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~ 158 (235)
+++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+.+ +...|.++++.++.++.+++|+||.||+||
T Consensus 123 ~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAa 202 (254)
T 2f2c_A 123 SCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGG 202 (254)
T ss_dssp C---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999877654 356789999999999999999999999999
Q ss_pred HHHHHHHhcCCCC-C---chhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 026635 159 IYAAQCTIYGFKQ-W---SKTCQWHSGYSEDQLLECATLMIGFHQKAA 202 (235)
Q Consensus 159 l~la~~~~~~~~~-w---~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~ 202 (235)
+++|+...++.+. | ...+..++|+++++|.+|++.|.+++.+..
T Consensus 203 i~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~~ 250 (254)
T 2f2c_A 203 LLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLYD 250 (254)
T ss_dssp HHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhCC
Confidence 9999987643333 5 788899999999999999999999987654
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.4e-45 Score=301.74 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=181.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHH
Q 026635 2 TQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLIL 81 (235)
Q Consensus 2 ~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~ 81 (235)
..|++|++++|..+++||.+++..++++++|+++||+|+|||++..++++.++||+|+||++||+|+||..+|.+++++.
T Consensus 39 ~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~ 118 (252)
T 1f5q_B 39 NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAY 118 (252)
T ss_dssp SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchH----HHHHHHHHHHHHhcchhccCCCHHHHHHH
Q 026635 82 ISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKK----LQLLSFFLIELSLVEYEMLKFTPSLLAAA 157 (235)
Q Consensus 82 ~~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~----~~~~a~~ll~~~l~~~~~~~~~ps~iA~a 157 (235)
++++.|++++|.+||+.||++|+|+++.|||++|+++|++.++.+.+ +...+.++++.++.|+.|+.|+||+||+|
T Consensus 119 ~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaa 198 (252)
T 1f5q_B 119 LCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLA 198 (252)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHH
Confidence 99999999999999999999999999999999999999999876543 45678999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC----chhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 026635 158 AIYAAQCTIYGFKQW----SKTCQWHSGYSEDQLLECATLMIGFHQKAA 202 (235)
Q Consensus 158 ~l~la~~~~~~~~~w----~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~ 202 (235)
|+.++ ++....| .+.+..++|++.+++.+|++.|.+++....
T Consensus 199 a~~~~---l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~ 244 (252)
T 1f5q_B 199 CMHLT---MNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFD 244 (252)
T ss_dssp HHHHH---HTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHH---hccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhC
Confidence 95444 4444444 567888999999999999999999986553
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=305.86 Aligned_cols=200 Identities=24% Similarity=0.355 Sum_probs=185.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHh
Q 026635 3 QQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILI 82 (235)
Q Consensus 3 ~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~ 82 (235)
.|++|++.+|..+++||.+++..++++++|+++|++|||||++..++.+.++|++|+||++||||+||..+|++++++.+
T Consensus 62 ~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~ 141 (306)
T 3g33_B 62 VQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIY 141 (306)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchH----HHHHHHHHHHHHhcchhccCCCHHHHHHHH
Q 026635 83 SDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKK----LQLLSFFLIELSLVEYEMLKFTPSLLAAAA 158 (235)
Q Consensus 83 ~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~----~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~ 158 (235)
+++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.+.+ +...++++++.++.++.|+.|+||+||+||
T Consensus 142 ~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAa 221 (306)
T 3g33_B 142 TDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGS 221 (306)
T ss_dssp TTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHH
T ss_pred hccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998865432 456788999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC----chhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 026635 159 IYAAQCTIYGFKQW----SKTCQWHSGYSEDQLLECATLMIGFHQKAA 202 (235)
Q Consensus 159 l~la~~~~~~~~~w----~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~ 202 (235)
+++|+..++..+.| .+.+..++|++.++|.+|++.|.+++.+..
T Consensus 222 i~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 222 IGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999988865555 678889999999999999999999987643
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.3e-44 Score=302.31 Aligned_cols=218 Identities=28% Similarity=0.486 Sum_probs=195.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhcc-ccccchhHHHHHHHHHHHhhhccccccccHhhH
Q 026635 1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQ-QQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDL 79 (235)
Q Consensus 1 ~~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~-~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l 79 (235)
|++|++|++++|..+++||.+++.+++++++|+++|++|+|||++. ..+++.++|++|+||++||||+||..+|+++++
T Consensus 39 ~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~ 118 (283)
T 1w98_B 39 LEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQF 118 (283)
T ss_dssp GGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Confidence 4679999999999999999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcch-----------HHHHHHHHHHHHHhcchhccC
Q 026635 80 ILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDK-----------KLQLLSFFLIELSLVEYEMLK 148 (235)
Q Consensus 80 ~~~~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-----------~~~~~a~~ll~~~l~~~~~~~ 148 (235)
+.++++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.++ .....+.++++.++.++.+++
T Consensus 119 ~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~ 198 (283)
T 1w98_B 119 AYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLE 198 (283)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGG
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999998875432 223346778999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhh---cCCCChhHHHHhhCCCCCCccccCC
Q 026635 149 FTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQK---AATGKLTGVHRKYCTSKFGYISKSE 225 (235)
Q Consensus 149 ~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~---~~~~~~~~i~~ky~~~~~~~vs~~~ 225 (235)
|+||.||+||+++|+ |.+.+..++|+++++|.+|++.|..++.. ...++.+. ++||+++.++.|+.-+
T Consensus 199 ~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 269 (283)
T 1w98_B 199 FPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLKH-FRGVADEDAHNIQTHR 269 (283)
T ss_dssp SCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CTTSCGGGGGGBCCCC
T ss_pred CCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcChHhhcc-hhccCHHhccCcccCc
Confidence 999999999999984 57788899999999999999999987753 34444444 7899999999999655
Q ss_pred Cc
Q 026635 226 PA 227 (235)
Q Consensus 226 ~~ 227 (235)
|.
T Consensus 270 ~~ 271 (283)
T 1w98_B 270 DS 271 (283)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.2e-43 Score=293.85 Aligned_cols=201 Identities=25% Similarity=0.369 Sum_probs=185.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHh
Q 026635 3 QQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILI 82 (235)
Q Consensus 3 ~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~ 82 (235)
.|++|++.+|..+++||.+++.+++++++|+++|++|+|||++..++++.++|++|+||+|||||+||..+|++++++.+
T Consensus 48 ~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~ 127 (271)
T 2w96_A 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIY 127 (271)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHH----HHHHHHHHHHHhcchhccCCCHHHHHHHH
Q 026635 83 SDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKL----QLLSFFLIELSLVEYEMLKFTPSLLAAAA 158 (235)
Q Consensus 83 ~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~----~~~a~~ll~~~l~~~~~~~~~ps~iA~a~ 158 (235)
+++.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+.+. ...+.++++.++.|..|++|+||.||+||
T Consensus 128 ~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAa 207 (271)
T 2w96_A 128 TDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGS 207 (271)
T ss_dssp TTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543 35688899999999999999999999999
Q ss_pred HHHHHHHhcC----CCCC----chhhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 026635 159 IYAAQCTIYG----FKQW----SKTCQWHSGYSEDQLLECATLMIGFHQKAAT 203 (235)
Q Consensus 159 l~la~~~~~~----~~~w----~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~ 203 (235)
+++|+..++. .+.| ...+..++|+++++|.+|++.|.+++.....
T Consensus 208 i~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 208 VVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999887752 2344 4578888999999999999999999876543
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=3.1e-38 Score=261.88 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=181.0
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhc--
Q 026635 7 INEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISD-- 84 (235)
Q Consensus 7 i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~-- 84 (235)
....+|..+++||.+++..++++++|+++|++|||||+..+++.+.+++++|+||||||||+||. ++++++++.+++
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~ 104 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHAC 104 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999 999999987652
Q ss_pred ------------CCCC--HHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-chhccCC
Q 026635 85 ------------KAYT--RKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLV-EYEMLKF 149 (235)
Q Consensus 85 ------------~~~~--~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~-~~~~~~~ 149 (235)
+.|+ +++|.+||+.||++|+|+++++||++|+.+|+..++.+.++...|+++++.++. +..++.|
T Consensus 105 ~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~ 184 (257)
T 2ivx_A 105 LHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQY 184 (257)
T ss_dssp HCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTS
T ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcC
Confidence 2344 899999999999999999999999999999999999999999999999999985 5568999
Q ss_pred CHHHHHHHHHHHHHHHhcCC-------CCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHHhhC
Q 026635 150 TPSLLAAAAIYAAQCTIYGF-------KQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYC 214 (235)
Q Consensus 150 ~ps~iA~a~l~la~~~~~~~-------~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~~~~~~i~~ky~ 214 (235)
+||.||+||+++|...++.. ..|...+ ..++++++|.+|++.|++++.+... +.+.|++.+.
T Consensus 185 ~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~~-~l~~~~~~~~ 253 (257)
T 2ivx_A 185 KPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTPN-RLKKIRNWRA 253 (257)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhChH-HhhHHHHhhh
Confidence 99999999999999887632 4577654 3589999999999999999976553 5677777664
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=262.01 Aligned_cols=205 Identities=17% Similarity=0.243 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcC---
Q 026635 9 EKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDK--- 85 (235)
Q Consensus 9 ~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~--- 85 (235)
.++|...++||.+++..++++++|+++|+.|||||+..+++.+.+++++|+|||+||||+||..+|.+++++.+++.
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k 119 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLK 119 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999977788898776521
Q ss_pred -----------CCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHH
Q 026635 86 -----------AYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLL 154 (235)
Q Consensus 86 -----------~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~i 154 (235)
.+++++|.+||+.||++|+|+++++||++|+.+|+..++.+.++...|+++++.++.+..++.|+||.|
T Consensus 120 ~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~I 199 (285)
T 3rgf_B 120 TRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMI 199 (285)
T ss_dssp HHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHH
T ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcC----CCChhHHHHhhCCCC
Q 026635 155 AAAAIYAAQCTIYGF-KQWSKTCQWHSGYSEDQLLECATLMIGFHQKAA----TGKLTGVHRKYCTSK 217 (235)
Q Consensus 155 A~a~l~la~~~~~~~-~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~----~~~~~~i~~ky~~~~ 217 (235)
|+|||++|...++.. ..|... +|++.++|.+|+..|++++.+.. .....+++.|+.+++
T Consensus 200 AaAaiylA~~~~~~~~~~W~~~----~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 200 ALACLHVACVVQQKDARQWFAE----LSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHT----SCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHcCCChhhHHHH----HCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 999999999877632 456554 59999999999999999987522 234677999999988
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.1e-37 Score=258.58 Aligned_cols=199 Identities=21% Similarity=0.355 Sum_probs=175.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhh
Q 026635 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILIS 83 (235)
Q Consensus 4 q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~ 83 (235)
+++++..+|..+++||.+++..++++++|+++|++|||||+..+++.+.+++++|+||||||||+||. ++++++++..+
T Consensus 33 ~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 33 DPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999996 88999998754
Q ss_pred c-----CCC------CHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcch----HHHHHHHHHHHHHhcchhccC
Q 026635 84 D-----KAY------TRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDK----KLQLLSFFLIELSLVEYEMLK 148 (235)
Q Consensus 84 ~-----~~~------~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~----~~~~~a~~ll~~~l~~~~~~~ 148 (235)
+ +.| ++++|.+||+.||+.|+|+++++||++|+.+|+..++.+. ++...|+++++.++.++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 3 233 4789999999999999999999999999999999988765 578899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCC-CCCchh------hh-hhcCCCHHHHHHHHHHHHHHHhhcCC
Q 026635 149 FTPSLLAAAAIYAAQCTIYGF-KQWSKT------CQ-WHSGYSEDQLLECATLMIGFHQKAAT 203 (235)
Q Consensus 149 ~~ps~iA~a~l~la~~~~~~~-~~w~~~------l~-~~t~~~~~~i~~~~~~i~~~~~~~~~ 203 (235)
|+||.||+||+++|...++.. +.|... .. ..+|+++++|.+|++.|++++.+...
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~~ 254 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ 254 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSCC
T ss_pred cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999877642 334321 11 23699999999999999999876554
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-37 Score=249.69 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=174.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccc-hhHHHHHHHHHHHhhhccccccccHhhHHHhh
Q 026635 5 FDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVR-KKLQLVGLVAMLLACKYEEVSVPVVGDLILIS 83 (235)
Q Consensus 5 ~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~-~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~ 83 (235)
+.++.+ |...++||.+++..++++++|+++|+.|||||+..+++.+ .+++++|+|||+||||+||. ++++++++.++
T Consensus 22 ~~~~~~-R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~ 99 (235)
T 1zp2_A 22 TCLSKD-TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEA 99 (235)
T ss_dssp CCSCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred cchhHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHH
Confidence 344444 9999999999999999999999999999999999999999 99999999999999999996 88999999988
Q ss_pred cC------CCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHH
Q 026635 84 DK------AYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAA 157 (235)
Q Consensus 84 ~~------~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a 157 (235)
++ .+++++|.+||+.||+.|+|+++++||+.|+.+|+..++.+.++...|.++++.++.+..++.|+||.||+|
T Consensus 100 ~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 100 NDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp HTTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred HHHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 65 578999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 026635 158 AIYAAQCTIYGF-KQWSKTCQWHSGYSEDQLLECATLMIGFHQKAA 202 (235)
Q Consensus 158 ~l~la~~~~~~~-~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~ 202 (235)
|+++|....+.. +.|.+.+ .|+++++|.+|++.|.+++....
T Consensus 180 ai~lA~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 180 ALLISCCNDENTIPKLLDLI---KSTDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp HHHHHHTSCTTHHHHHHHHC---CHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhcCCCCCCCcchh---hcCCHHHHHHHHHHHHHHHhhCC
Confidence 999998765422 1244433 28999999999999999987654
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=2.2e-36 Score=260.88 Aligned_cols=201 Identities=21% Similarity=0.284 Sum_probs=176.5
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhc--
Q 026635 7 INEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISD-- 84 (235)
Q Consensus 7 i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~-- 84 (235)
....+|..+++||.+++..|+++.+|+++|++|||||+..+++.+.+++++|+||||||||+||. ++++++++.+++
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~ 111 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTC 111 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999 899999986542
Q ss_pred ------------CCCC--HHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-chhccCC
Q 026635 85 ------------KAYT--RKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLV-EYEMLKF 149 (235)
Q Consensus 85 ------------~~~~--~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~-~~~~~~~ 149 (235)
+.|+ +++|.+||+.||++|+|+++++||+.|+..|+..+..+.++...|+++++.++. +..++.|
T Consensus 112 ~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y 191 (358)
T 2pk2_A 112 LHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQY 191 (358)
T ss_dssp HCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTS
T ss_pred hccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhcc
Confidence 2343 789999999999999999999999999999999999889999999999999985 4558999
Q ss_pred CHHHHHHHHHHHHHHHhcCC-------CCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHH
Q 026635 150 TPSLLAAAAIYAAQCTIYGF-------KQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHR 211 (235)
Q Consensus 150 ~ps~iA~a~l~la~~~~~~~-------~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~~~~~~i~~ 211 (235)
+||.||+|||++|...++.. ..|...+. .++++++|.+|++.|++++..... +++.+.+
T Consensus 192 ~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~--~~vt~~~l~~i~~~il~~y~~~~~-~L~~i~~ 257 (358)
T 2pk2_A 192 TPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVD--ATVTLELLDELTHEFLQILEKTPN-RLKRIWN 257 (358)
T ss_dssp CHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSC--SSCCHHHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHh--ccCCHHHHHHHHHHHHHHHHhCcc-cccchhc
Confidence 99999999999999877621 45776552 578999999999999999876654 3444443
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1.7e-33 Score=240.11 Aligned_cols=202 Identities=18% Similarity=0.217 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcC--
Q 026635 10 KMRAILIDWLIEVHDKFD--LMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDK-- 85 (235)
Q Consensus 10 ~~R~~~v~wm~~~~~~~~--l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~-- 85 (235)
.+|...++||.++|..++ +++.|+++|+.|||||+..+++.+.+++++|+||||||||+||. ++++++++....+
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p 133 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESP 133 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccCh
Confidence 467888999999999999 99999999999999999999999999999999999999999999 7889999876543
Q ss_pred ---CCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHh-------CcchHHHHHHHHHHHHHhcchhccCCCHHHHH
Q 026635 86 ---AYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAA-------QSDKKLQLLSFFLIELSLVEYEMLKFTPSLLA 155 (235)
Q Consensus 86 ---~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~-------~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA 155 (235)
.+++++|.+||+.||+.|+|+++++||+.|+..|+..+ +.++.+...|+++++.++.+..++.|+||.||
T Consensus 134 ~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IA 213 (323)
T 1jkw_A 134 LGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIA 213 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHH
Confidence 35689999999999999999999999999999998765 23456788999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCchhhhhh--cCCCHHHHHHHHHHHHHHHhhcCCC---ChhHHHHh
Q 026635 156 AAAIYAAQCTIYGF-KQWSKTCQWH--SGYSEDQLLECATLMIGFHQKAATG---KLTGVHRK 212 (235)
Q Consensus 156 ~a~l~la~~~~~~~-~~w~~~l~~~--t~~~~~~i~~~~~~i~~~~~~~~~~---~~~~i~~k 212 (235)
+||+++|....+.. +.|...+... ++++.+++.++++.|..++.....+ ..+.|++|
T Consensus 214 aAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~K 276 (323)
T 1jkw_A 214 LTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQK 276 (323)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 99999999877743 6788877554 7889999999999999998875433 34556666
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=2.4e-30 Score=207.85 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCH
Q 026635 10 KMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTR 89 (235)
Q Consensus 10 ~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~ 89 (235)
+......++|.++|..+++++.+..+|+.|||||+..+.+.+.+.++++++|+|+|||+||. ++++++++..++ ++.
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 34567899999999999999999999999999999999999999999999999999999998 899999998876 789
Q ss_pred HHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCC
Q 026635 90 KEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGF 169 (235)
Q Consensus 90 ~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~ 169 (235)
++|.++|+.|++.|+|++.+++|+.|+.+|.+.++.+++....|+++++.+..+..+.+++|+.||+||+++|.... +.
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~-~~ 158 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQAS-AE 158 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHH-CC
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999998765 45
Q ss_pred CCCchhhhhhcCCCHHHHHHHHHHHHHHHhh
Q 026635 170 KQWSKTCQWHSGYSEDQLLECATLMIGFHQK 200 (235)
Q Consensus 170 ~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~ 200 (235)
+.|...+..++|+++.+|.+|++.|.+....
T Consensus 159 ~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 159 KRTQKEIGDIAGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHGGGHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999886543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.95 E-value=1.2e-26 Score=185.32 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCH
Q 026635 10 KMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTR 89 (235)
Q Consensus 10 ~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~ 89 (235)
.......++|.++|..+++++.+...|..+++|++....+.+.+.+.++++|+|+|||.++. +++++|+..+++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~-p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV-PRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--CCH
Confidence 34568899999999999999999999999999999999999999999999999999999996 999999998876 789
Q ss_pred HHHHHHHHHHHHHcCccccC--CChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhc
Q 026635 90 KEVLEMESLMLNTLQFNMSV--PTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIY 167 (235)
Q Consensus 90 ~~i~~~E~~IL~~L~f~l~~--~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~ 167 (235)
.+|.++++.|++.|+|++.+ ++|.+|+.+|...++.++++...|+.+++.+..+..+.+++|+.||+||+|+|....
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~- 162 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE- 162 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999 999999999999999999999999999999999888999999999999999998765
Q ss_pred CCCCCchhhhhhcCCCHHHHHHHHHHHHHHHh
Q 026635 168 GFKQWSKTCQWHSGYSEDQLLECATLMIGFHQ 199 (235)
Q Consensus 168 ~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~ 199 (235)
+.+.|...+..++|+++.+|.++++.+.+.+.
T Consensus 163 ~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 163 GEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999998765
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.9e-23 Score=178.30 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHH
Q 026635 13 AILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEV 92 (235)
Q Consensus 13 ~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i 92 (235)
......|.+++..++|+..+...|..||.|++....+.+.+.+.++++|+|||||.++. |++++++..+++ ++.++|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~keI 203 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHHH
Confidence 46789999999999999999999999999999999999999999999999999998887 999999998876 789999
Q ss_pred HHHHHHHHHHcC------------ccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHH
Q 026635 93 LEMESLMLNTLQ------------FNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIY 160 (235)
Q Consensus 93 ~~~E~~IL~~L~------------f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~ 160 (235)
.++++.|++.|+ +++.+++|.+|+.+|++.++.+.++...|+.+++.+..+..+.+++|+.||+||||
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIy 283 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHh
Q 026635 161 AAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQ 199 (235)
Q Consensus 161 la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~ 199 (235)
+|....+ ...|...+..++|+++..|+++++.|.+...
T Consensus 284 lAa~~~~-~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 284 LNILLFQ-IPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9987654 5678899999999999999999999998764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.75 E-value=2e-18 Score=147.94 Aligned_cols=185 Identities=13% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHH
Q 026635 13 AILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEV 92 (235)
Q Consensus 13 ~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i 92 (235)
......|.++|..++|+..+...|..+|.+++....+.+.....++++|+|+|||.++. +.++.|+..+++ .++++|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHH
Confidence 46778899999999999999999999999999998899999999999999999998887 999999998875 678999
Q ss_pred HHHHHHHHHHcCcc------------ccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHH
Q 026635 93 LEMESLMLNTLQFN------------MSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIY 160 (235)
Q Consensus 93 ~~~E~~IL~~L~f~------------l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~ 160 (235)
.+..+.|.+.|+.. +...+|.+|+.+|.+.++.+.++...|..+++.+..+.-..+.+|+.||+||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIy 283 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHH
Confidence 99999999999974 777899999999999999999999999999999888777789999999999999
Q ss_pred HHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 026635 161 AAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKA 201 (235)
Q Consensus 161 la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~ 201 (235)
+|....+ ...-...+..++|+++..|+..+++|.+.....
T Consensus 284 lAa~l~g-~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l 323 (345)
T 4bbr_M 284 LNILLFQ-IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKL 323 (345)
T ss_dssp -----------------------------------------
T ss_pred HHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 9976554 455677888899999999999999998765443
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.56 E-value=6.1e-07 Score=74.03 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHH
Q 026635 14 ILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQ---QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRK 90 (235)
Q Consensus 14 ~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~---~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~ 90 (235)
.+-+|+.++....+++..++-.|..|+||+.... .+...+.+-+.++|+.+|+|+-+....+-+....++ .++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 3668999999999999999999999999998753 356778899999999999998766566767777774 47899
Q ss_pred HHHHHHHHHHHHcCccccCCChHHHHHHHHHHh
Q 026635 91 EVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAA 123 (235)
Q Consensus 91 ~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~ 123 (235)
++-.||+..|..|+|++.+. +.+|...+.+..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 99999999999999999766 555666555554
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.98 E-value=4.1e-05 Score=60.09 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHHHHH
Q 026635 16 IDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEM 95 (235)
Q Consensus 16 v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i~~~ 95 (235)
.++|.+.+..++++.++...|..++.+.....-..+.....+|++|+++||+..+. +.+.+++...++ ++...|.+.
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~ 185 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNR 185 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 36888999999999999999999999999877788888999999999999998775 678889888775 588999999
Q ss_pred HHHHHHHcCcccc
Q 026635 96 ESLMLNTLQFNMS 108 (235)
Q Consensus 96 E~~IL~~L~f~l~ 108 (235)
-+.+.+.|+.++.
T Consensus 186 ~~~l~~~l~~~~~ 198 (200)
T 1ais_B 186 YKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 9999999987654
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.23 E-value=0.0026 Score=49.92 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHHHHHHHH
Q 026635 112 PYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECA 191 (235)
Q Consensus 112 p~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~ 191 (235)
...++..+...++.++.....|..+.+..+....+-++++..+|+||+|+|++..+ .+.-...+..+++++..+|..++
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHH
Confidence 56789999999999999999999998998888888899999999999999987654 45666777788999999999999
Q ss_pred HHHHHHHh
Q 026635 192 TLMIGFHQ 199 (235)
Q Consensus 192 ~~i~~~~~ 199 (235)
..|++.+.
T Consensus 87 ~~ll~~L~ 94 (207)
T 1c9b_A 87 KLILKALE 94 (207)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHC
Confidence 98888765
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=95.85 E-value=0.055 Score=45.90 Aligned_cols=91 Identities=14% Similarity=0.005 Sum_probs=77.3
Q ss_pred cCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHHHH
Q 026635 108 SVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQL 187 (235)
Q Consensus 108 ~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~~i 187 (235)
+....+..|..+...++.++.+...|..+...+.....+-+.+...+|+||+|+|++.. ..+.-...+..+++++..+|
T Consensus 125 ~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~-~~prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA-EVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp STTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHT-CCBCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhc-CCCccHHHHHHHhCCCHHHH
Confidence 45678899999999999999999999999898887766778999999999999998755 44566667778899999999
Q ss_pred HHHHHHHHHHHh
Q 026635 188 LECATLMIGFHQ 199 (235)
Q Consensus 188 ~~~~~~i~~~~~ 199 (235)
..+++.|.+.+.
T Consensus 204 gr~~k~l~~~L~ 215 (345)
T 4bbr_M 204 GKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHhC
Confidence 999999887654
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=95.85 E-value=0.069 Score=42.55 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccC-CCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc--------CC
Q 026635 112 PYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLK-FTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS--------GY 182 (235)
Q Consensus 112 p~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~-~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t--------~~ 182 (235)
..+++......++.+......|..+.+..+....+.+ +++-.+|+||+++|.+.-+. +.-...+..++ .+
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~~~~ 109 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLKVKL 109 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccchhhc
Confidence 4567888888889999999999999899888888888 99999999999999876553 33333443333 68
Q ss_pred CHHHHHHHHHHHHHHHh
Q 026635 183 SEDQLLECATLMIGFHQ 199 (235)
Q Consensus 183 ~~~~i~~~~~~i~~~~~ 199 (235)
+.++|..+...|++.+.
T Consensus 110 ~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 110 SRSNISEIEFEIISVLD 126 (235)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 89999999999988765
No 24
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=95.27 E-value=0.15 Score=41.49 Aligned_cols=87 Identities=8% Similarity=0.057 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcC--CCHHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSG--YSEDQLLEC 190 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~--~~~~~i~~~ 190 (235)
.+|+.......+...+...+|..+++..+....+-...+-.+|+||+++|.+..+..++-...+..+++ ++.++|.++
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~m 121 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQM 121 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHH
Confidence 456777777778888888899999999888777888899999999999998876554444555656664 899999999
Q ss_pred HHHHHHHHh
Q 026635 191 ATLMIGFHQ 199 (235)
Q Consensus 191 ~~~i~~~~~ 199 (235)
...|++.++
T Consensus 122 E~~IL~~L~ 130 (269)
T 2b9r_A 122 EMKILRALN 130 (269)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999998765
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.029 Score=47.63 Aligned_cols=89 Identities=13% Similarity=-0.015 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHHHHHH
Q 026635 110 PTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLE 189 (235)
Q Consensus 110 ~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~ 189 (235)
...+..|..+...++.++.+...|..+...+.....+-+.+...+|+||+|+|++..+ .+.-...+..+++++..+|..
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~-~prtl~ei~~~~~v~~keIgr 205 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB-SSCCHHHHHHSSSCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHCCCHHHHHH
Confidence 3577889999999999999999999998888777777789999999999999987543 455566777889999999999
Q ss_pred HHHHHHHHHh
Q 026635 190 CATLMIGFHQ 199 (235)
Q Consensus 190 ~~~~i~~~~~ 199 (235)
+++.|.+.+.
T Consensus 206 ~~~~l~~~L~ 215 (345)
T 3k7a_M 206 TLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=94.61 E-value=0.27 Score=40.36 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc------------
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS------------ 180 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t------------ 180 (235)
.+|+......++.+......|..+++..+....+..+.+-.+|+||+++|.+.-+...+-...+..++
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 45677777888888999999999999988888889999999999999999876543222222222211
Q ss_pred ----CCCHHHHHHHHHHHHHHHh
Q 026635 181 ----GYSEDQLLECATLMIGFHQ 199 (235)
Q Consensus 181 ----~~~~~~i~~~~~~i~~~~~ 199 (235)
.++.++|.++-..|++.+.
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L~ 149 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELMD 149 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHcC
Confidence 2577899998888887664
No 27
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=94.57 E-value=0.17 Score=40.85 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc--CCCHHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS--GYSEDQLLEC 190 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t--~~~~~~i~~~ 190 (235)
.+|+.......+...+...+|..+++..+....+-....-.+|+||+++|.+..+..++-...+..++ .++.++|.+.
T Consensus 43 vdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~m 122 (260)
T 2cch_B 43 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122 (260)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHH
Confidence 35666666777777788888888888877666666677889999999999887665344555555566 4899999999
Q ss_pred HHHHHHHHhh-cCCCChhHHHHhhCC
Q 026635 191 ATLMIGFHQK-AATGKLTGVHRKYCT 215 (235)
Q Consensus 191 ~~~i~~~~~~-~~~~~~~~i~~ky~~ 215 (235)
-..|++.++- .+.+.+...-.+|.+
T Consensus 123 E~~iL~~L~~~l~~~tp~~fl~~~~~ 148 (260)
T 2cch_B 123 EHLVLKVLTFDLAAPTVNQFLTQYFL 148 (260)
T ss_dssp HHHHHHHTTTCCCCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 9999987652 333333344444443
No 28
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=94.56 E-value=0.27 Score=39.55 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc--CCCHHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS--GYSEDQLLEC 190 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t--~~~~~~i~~~ 190 (235)
.+|+-......+...+...+|..++|..+.....-....-.+|+||+++|.+.-...++-...+...+ .++.++|.+.
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 45666666777788888889999999988877788889999999999999887654444444454554 3799999999
Q ss_pred HHHHHHHHh
Q 026635 191 ATLMIGFHQ 199 (235)
Q Consensus 191 ~~~i~~~~~ 199 (235)
-..|++.++
T Consensus 136 E~~IL~~L~ 144 (254)
T 2f2c_A 136 EKDILEALK 144 (254)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 999988765
No 29
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=94.47 E-value=0.32 Score=39.51 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc--CCCHHHHHHHH
Q 026635 114 VFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS--GYSEDQLLECA 191 (235)
Q Consensus 114 ~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t--~~~~~~i~~~~ 191 (235)
+|+.......+.......+|..+++-.+....+-...+-.+|+||+++|.+.-+..+.-...+..++ .++.++|.+..
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 4555555666677777778888888888777778889999999999999887654343444444554 38999999999
Q ss_pred HHHHHHHh
Q 026635 192 TLMIGFHQ 199 (235)
Q Consensus 192 ~~i~~~~~ 199 (235)
..|++.++
T Consensus 142 ~~IL~~L~ 149 (271)
T 2w96_A 142 LLLVNKLK 149 (271)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 99988664
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=94.41 E-value=0.23 Score=40.06 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcC--CCHHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSG--YSEDQLLEC 190 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~--~~~~~i~~~ 190 (235)
.+|+.......+...+...+|..+++..+.....-....-.+|+||+++|.+.-...++-...+..+++ ++.++|.+.
T Consensus 55 vdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 134 (257)
T 1g3n_C 55 GTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQ 134 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHH
Confidence 345666666677778888888888898887777777788899999999998876544444455555544 899999999
Q ss_pred HHHHHHHHh
Q 026635 191 ATLMIGFHQ 199 (235)
Q Consensus 191 ~~~i~~~~~ 199 (235)
-..|++.++
T Consensus 135 E~~iL~~L~ 143 (257)
T 1g3n_C 135 EKELLEKLA 143 (257)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 999888664
No 31
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=93.77 E-value=0.41 Score=39.70 Aligned_cols=87 Identities=14% Similarity=0.050 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcC--CCHHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSG--YSEDQLLEC 190 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~--~~~~~i~~~ 190 (235)
.+|+.......+.......+|..+++..+....+....+-.+|++|+++|.+.....+.-...+..+++ ++.++|.+.
T Consensus 75 vdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~m 154 (306)
T 3g33_B 75 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHH
Confidence 345666666677778888888888888887777888899999999999998876554444444555554 889999999
Q ss_pred HHHHHHHHh
Q 026635 191 ATLMIGFHQ 199 (235)
Q Consensus 191 ~~~i~~~~~ 199 (235)
-..|++.+.
T Consensus 155 E~~IL~~L~ 163 (306)
T 3g33_B 155 EVLVLGKLK 163 (306)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999988765
No 32
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.57 E-value=0.26 Score=39.65 Aligned_cols=89 Identities=7% Similarity=0.081 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCCh----hHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHh------hHHHhhcC
Q 026635 16 IDWLIEVHDKFDLMS----ETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVG------DLILISDK 85 (235)
Q Consensus 16 v~wm~~~~~~~~l~~----~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~------~l~~~~~~ 85 (235)
.+++...+..++.+. ++...|..+++..+....+-......+|++|+++|+++.+...+... .-......
T Consensus 152 ~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~ 231 (258)
T 2i53_A 152 YQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQ 231 (258)
T ss_dssp HHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSS
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhcc
Confidence 357778888888876 57778888898887777777788899999999999998654332211 00011123
Q ss_pred CCCHHHHHHHHHHHHHHcC
Q 026635 86 AYTRKEVLEMESLMLNTLQ 104 (235)
Q Consensus 86 ~~~~~~i~~~E~~IL~~L~ 104 (235)
.++.+++...-..|++..+
T Consensus 232 ~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 232 DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SCCHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6789999999999988654
No 33
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.49 E-value=0.56 Score=38.39 Aligned_cols=87 Identities=8% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcc-hhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc--CCCHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVE-YEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS--GYSEDQLLE 189 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~-~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t--~~~~~~i~~ 189 (235)
.+|+.......+...+...+|..++|-.+.. ...-....-.+|+||+++|.+.....++-...+..++ .++.++|.+
T Consensus 54 v~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 54 LDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 3456666666777777888888888877664 3566788889999999999887655444445555555 488999999
Q ss_pred HHHHHHHHHh
Q 026635 190 CATLMIGFHQ 199 (235)
Q Consensus 190 ~~~~i~~~~~ 199 (235)
+...|++.++
T Consensus 134 mE~~IL~~L~ 143 (283)
T 1w98_B 134 MELMIMKALK 143 (283)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998765
No 34
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=93.25 E-value=0.83 Score=37.55 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=73.3
Q ss_pred CCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-chhc--cCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHH
Q 026635 109 VPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLV-EYEM--LKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSED 185 (235)
Q Consensus 109 ~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~-~~~~--~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~ 185 (235)
.++..+|+.++......+....-.+..+++.... .+.+ ......-+-.+|+.+|.+.+++...|.....++.|++.+
T Consensus 74 ~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ 153 (293)
T 2pmi_B 74 NISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCH 153 (293)
T ss_dssp SSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHH
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHH
Confidence 4567899999999888877777666666665433 3333 467788899999999999999988888899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 026635 186 QLLECATLMIGFHQ 199 (235)
Q Consensus 186 ~i~~~~~~i~~~~~ 199 (235)
++...-..++.++.
T Consensus 154 ELN~LE~eFL~lLd 167 (293)
T 2pmi_B 154 ELNILENDFLKRVN 167 (293)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988764
No 35
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=92.61 E-value=1.1 Score=35.92 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc-----------
Q 026635 112 PYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS----------- 180 (235)
Q Consensus 112 p~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t----------- 180 (235)
..+|+......++.+.....+|..+++..+....+..+++-.+|+||+++|.+.-+. +.-...+..++
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~~~~ 112 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLEPLL 112 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTSCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCCCCC
Confidence 557888888889999999999999999998888899999999999999999876554 33223332221
Q ss_pred C-----CC--HHHHHHHHHHHHHHHh
Q 026635 181 G-----YS--EDQLLECATLMIGFHQ 199 (235)
Q Consensus 181 ~-----~~--~~~i~~~~~~i~~~~~ 199 (235)
. |. .++|..+-..|++-+.
T Consensus 113 ~~~~~~y~~~~~~I~~~E~~iL~~L~ 138 (257)
T 2ivx_A 113 DTKCDAYLQQTRELVILETIMLQTLG 138 (257)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 11 5677777777776554
No 36
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=92.34 E-value=1.2 Score=37.06 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=62.0
Q ss_pred HHHHHHHHHhC--cchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCC-------H
Q 026635 114 VFIQRFLKAAQ--SDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYS-------E 184 (235)
Q Consensus 114 ~fl~~~~~~~~--~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~-------~ 184 (235)
.++..+...++ .+......|..+++-.+....+..+.|-.+|+||+++|.+.-+. +.-...+...+.-+ .
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~~~~ 140 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQEKAL 140 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhHHHH
Confidence 45667777777 88888889999999999888899999999999999999876544 22222332223223 5
Q ss_pred HHHHHHHHHHHHHHh
Q 026635 185 DQLLECATLMIGFHQ 199 (235)
Q Consensus 185 ~~i~~~~~~i~~~~~ 199 (235)
++|..+-..|++-+.
T Consensus 141 ~~Il~~E~~iL~~L~ 155 (323)
T 1jkw_A 141 EQILEYELLLIQQLN 155 (323)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 677777777777554
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=91.31 E-value=4.1 Score=31.54 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHH
Q 026635 14 ILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQ---QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRK 90 (235)
Q Consensus 14 ~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~---~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~ 90 (235)
.+.+-|..+..+-+++..++-.|+.+-..|.-.. +-.-++.+-+|++|+.||+--... |.++.++.-+ +.....-
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~-PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQ-PLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCC-CccHHHHHHH-hhhhhHH
Confidence 4677789999999999999999999999987754 455567899999999999984444 7777777533 3333323
Q ss_pred HHHHHHHHHHHHcCcc-----ccCCChHHHHHHHHHHhCcchHHHHH-HHHHHHHHhcchhccCCCHHHHHHHHHHHHH
Q 026635 91 EVLEMESLMLNTLQFN-----MSVPTPYVFIQRFLKAAQSDKKLQLL-SFFLIELSLVEYEMLKFTPSLLAAAAIYAAQ 163 (235)
Q Consensus 91 ~i~~~E~~IL~~L~f~-----l~~~tp~~fl~~~~~~~~~~~~~~~~-a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~ 163 (235)
++.+. .|++.++-. +.-.-.-..+..|...++..-..+.. +..++...-.-..+..+.--.--.-++++|+
T Consensus 92 elrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLLAr 168 (260)
T 3h4c_A 92 ELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALLLAR 168 (260)
T ss_dssp HHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 33333 345555431 11112334556666666655444433 2223332222233445544444455667775
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=89.00 E-value=2.9 Score=33.54 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhc--CCCHHHHHHH
Q 026635 113 YVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS--GYSEDQLLEC 190 (235)
Q Consensus 113 ~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t--~~~~~~i~~~ 190 (235)
.+|+-......+...+...+|-.++|--+.....-....-.+|++|+++|.+.-...++-...+...+ .|+.++|.+.
T Consensus 53 vdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 34555566666777777788888888777666666777889999999999886654433334444444 4889999998
Q ss_pred HHHHHHHHh
Q 026635 191 ATLMIGFHQ 199 (235)
Q Consensus 191 ~~~i~~~~~ 199 (235)
-..|++.++
T Consensus 133 E~~IL~~L~ 141 (252)
T 1f5q_B 133 EVKSLDTLS 141 (252)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888888654
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=88.50 E-value=4.2 Score=27.44 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=55.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhcccc------ccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHH
Q 026635 19 LIEVHDKFDLMSETLFLSINLIDRFLSQQQ------VVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEV 92 (235)
Q Consensus 19 m~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~------~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i 92 (235)
+.++|..|++.. ....|-.++++|=..-+ ++-++. ..+++|+|.|||..-.++.. ..++..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P-~f~aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRP-LFTSAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSH-HHHHHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccccc-HHHHHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 468899999954 88899999999965421 333344 56778999999988775555 44554443 467888
Q ss_pred HHHHHHHHHH
Q 026635 93 LEMESLMLNT 102 (235)
Q Consensus 93 ~~~E~~IL~~ 102 (235)
.+.+..+-+.
T Consensus 81 ~~l~~~~e~~ 90 (95)
T 3m03_A 81 DRLCKQLEKI 90 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777765443
No 40
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.70 E-value=0.64 Score=39.49 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHHHHHHHhcC
Q 026635 112 PYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYG 168 (235)
Q Consensus 112 p~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~la~~~~~~ 168 (235)
..+||......++.+.....+|..+++..+....+..+.+-.+|+||+++|.+.-..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 566777788888888899999999999998888899999999999999999876544
No 41
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=77.71 E-value=7.2 Score=32.19 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=46.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhc
Q 026635 19 LIEVHDKFDLMSETLFLSINLIDRFLSQQ---QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISD 84 (235)
Q Consensus 19 m~~~~~~~~l~~~t~~~Av~l~Dr~l~~~---~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~ 84 (235)
..++|..++++..|...|...+.+.-... +-..+.-+..-.+|||+|+.-.+....++..+++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 45789999999999999999999976531 1222334444556699999876666777888777653
No 42
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=54.09 E-value=11 Score=18.82 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 026635 89 RKEVLEMESLMLNTLQFN 106 (235)
Q Consensus 89 ~~~i~~~E~~IL~~L~f~ 106 (235)
.++|..+|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 478999999999999987
No 43
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=45.83 E-value=24 Score=16.87 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=19.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcC
Q 026635 5 FDINEKMRAILIDWLIEVHDKFD 27 (235)
Q Consensus 5 ~~i~~~~R~~~v~wm~~~~~~~~ 27 (235)
.+++...|+.+..|=..++..++
T Consensus 2 rgltsrdrrriarwekriayalk 24 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRIAYALK 24 (26)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHh
Confidence 46889999999999988887654
No 44
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=40.44 E-value=45 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHH
Q 026635 55 QLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEV 92 (235)
Q Consensus 55 ~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i 92 (235)
.|+-++|-++|..+....+-.++++..+.+ .+|+++-
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 577888999999998876666666666543 5787653
No 45
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=39.96 E-value=82 Score=26.37 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCh-hHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcC
Q 026635 17 DWLIEVHDKFDLMS-ETLFLSINLIDRFLSQQ--QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDK 85 (235)
Q Consensus 17 ~wm~~~~~~~~l~~-~t~~~Av~l~Dr~l~~~--~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~ 85 (235)
.-+.++|..++++. +.....-..|+..+... -+...++--+.++|++.-||+... ..+.++++.....
T Consensus 220 ~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~-~~tF~~Ii~~Yr~ 290 (347)
T 2r7g_A 220 LRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNI-DLKFKIIVTAYKD 290 (347)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHh
Confidence 45778899998765 55566777888877643 256667889999999999999875 6788888775544
No 46
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=39.45 E-value=56 Score=24.11 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHH
Q 026635 55 QLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEV 92 (235)
Q Consensus 55 ~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i 92 (235)
.|+-++|-.+|.++....+-.++++..+.+ .||+++-
T Consensus 120 ~Lldl~c~~vA~~ikgktpeeiR~~f~I~n-d~t~eEe 156 (169)
T 3v7d_A 120 PLLDAGCKVVAEMIRGRSPEEIRRTFNIVN-DFTPEEE 156 (169)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 467778999999888776666666665543 5787654
No 47
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=38.99 E-value=19 Score=25.74 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=29.4
Q ss_pred ccchhHHHHHHHHHHHhhhc--cccccccHhhHHHhhcCCCCHHHHHHHHHHHHHHcCc
Q 026635 49 VVRKKLQLVGLVAMLLACKY--EEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQF 105 (235)
Q Consensus 49 ~~~~~l~l~a~tcl~IA~K~--ee~~~~~~~~l~~~~~~~~~~~~i~~~E~~IL~~L~f 105 (235)
-+...+|....|||++|--+ +|..-| ++.+.. .-+++.+.+-=..|++.+.-
T Consensus 73 ~se~eLqa~~lTCLYlsYSYmGNEISYP-LKPFlv----~~~k~~FW~rcl~iin~~S~ 126 (149)
T 3o0g_D 73 GSDHELQAVLLTCLYLSYSYMGNEISYP-LKPFLV----ESCKEAFWDRCLSVINLMSS 126 (149)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHCSSSCCC-SGGGCC----CSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccccc-Ccchhh----cccHHHHHHHHHHHHHhhch
Confidence 34566999999999999876 333111 222221 11355555555555555443
No 48
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=37.96 E-value=1.8e+02 Score=24.32 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHcCccccCCChHHHHH----------------------------HHHHHhCcc-hHHHHHHHHHHHH
Q 026635 89 RKEVLEMESLMLNTLQFNMSVPTPYVFIQ----------------------------RFLKAAQSD-KKLQLLSFFLIEL 139 (235)
Q Consensus 89 ~~~i~~~E~~IL~~L~f~l~~~tp~~fl~----------------------------~~~~~~~~~-~~~~~~a~~ll~~ 139 (235)
.+.+...|..||+.|-|.-+.| -++.+. .++..+..+ .++....+.+.+.
T Consensus 168 vkHL~~iEe~iLeslaW~~~S~-L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~ 246 (347)
T 2r7g_A 168 IKHLERCEHRIMESLAWLSDSP-LFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQH 246 (347)
T ss_dssp HHHHHHHHHHHHHTGGGSTTCT-HHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCH-HHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4667889999999999988775 222222 111222211 1233334444444
Q ss_pred Hhcc-hh-ccCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHH---------------------HHH
Q 026635 140 SLVE-YE-MLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATL---------------------MIG 196 (235)
Q Consensus 140 ~l~~-~~-~~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~---------------------i~~ 196 (235)
++.. .+ +..-.--+|-.+|+|...+..+. ..+-.+|..+|+. |..
T Consensus 247 ~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~------------~~tF~~Ii~~Yr~qpq~~~~vyr~V~i~~~~~gDII~ 314 (347)
T 2r7g_A 247 TLQNEYELMRDRHLDQIMMCSMYGICKVKNI------------DLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIV 314 (347)
T ss_dssp HHHHCGGGGTTSCHHHHHHHHHHHHHHHTTC------------CCCHHHHHHHHTTSTTCCTHHHHSEECSSSCEECHHH
T ss_pred HHHhChHhhcCCcHHHHHHHHHHHHHHhcCC------------CCCHHHHHHHHHhcccccchheeeeeccCCCcCchHH
Confidence 4432 22 44556678888888888765432 2334444444322 555
Q ss_pred HHhhcCCCChhHHHHhhCCCC
Q 026635 197 FHQKAATGKLTGVHRKYCTSK 217 (235)
Q Consensus 197 ~~~~~~~~~~~~i~~ky~~~~ 217 (235)
+|+...-+..+..-.+|.++.
T Consensus 315 FYN~vfvp~mK~f~~~~~~~~ 335 (347)
T 2r7g_A 315 FYNSVFMQRLKTNILQYASTR 335 (347)
T ss_dssp HHHHTHHHHHHHHHHHTTSSS
T ss_pred hhhHHHHHHHHHHHHHhCCCC
Confidence 565555555566666777653
No 49
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=36.32 E-value=73 Score=23.06 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhccccccccHhhHHHhhcCCCCHHHH
Q 026635 55 QLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEV 92 (235)
Q Consensus 55 ~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~~~~~~~i 92 (235)
.|+-++|-++|..+....+-.++++..+. +.+|+++-
T Consensus 113 ~Lld~~c~~va~~i~gkt~eeir~~f~I~-~d~t~eEe 149 (159)
T 2ast_A 113 GLLDVTCKTVANMIKGKTPEEIRKTFNIK-NDFTEEEE 149 (159)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTCC-CCSCTTHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHH
Confidence 46777899999999887666666666554 34676543
No 50
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=33.11 E-value=26 Score=26.34 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=35.3
Q ss_pred ccchhHHHHHHHHHHHhhhc--cccccccHhhHHHhhcCCCCHHHHHHHHHHHHHHcCccccC--CChHHHHHHHHHH
Q 026635 49 VVRKKLQLVGLVAMLLACKY--EEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSV--PTPYVFIQRFLKA 122 (235)
Q Consensus 49 ~~~~~l~l~a~tcl~IA~K~--ee~~~~~~~~l~~~~~~~~~~~~i~~~E~~IL~~L~f~l~~--~tp~~fl~~~~~~ 122 (235)
-...++|....|||++|--+ +|..-| ++-++. .-+++.+..-=..|+..+.-++-. ..|..|-+-|...
T Consensus 118 ~te~eLqa~vLTCLYlsYSYmGNEISYP-LKPFlv----e~~ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eL 190 (208)
T 1unl_D 118 GSDHELQAVLLTCLYLSYSYMGNEISYP-LKPFLV----ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDL 190 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSSCCC-SGGGCC----SSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhCcccccc-Ccceee----cCCHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHH
Confidence 34556999999999999876 333111 222221 123455555444444444333321 2355555555443
No 51
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=31.74 E-value=95 Score=20.85 Aligned_cols=38 Identities=5% Similarity=0.066 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 026635 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRF 43 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~ 43 (235)
.|+++.|...++-|.+.....+++.+........+.++
T Consensus 72 ~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~~ 109 (116)
T 1dlw_A 72 GVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETV 109 (116)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHH
Confidence 58999999999999999999999888776666666543
No 52
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=31.65 E-value=1.1e+02 Score=20.07 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCCCCCcHHHHHHHHHHHH--------------HHHHHcCCChhHHHHHHHHHH
Q 026635 1 MTQQFDINEKMRAILIDWLI--------------EVHDKFDLMSETLFLSINLID 41 (235)
Q Consensus 1 ~~~q~~i~~~~R~~~v~wm~--------------~~~~~~~l~~~t~~~Av~l~D 41 (235)
|...+..+++.|..+|..+. +++..++++..|++.=+.-++
T Consensus 1 M~~~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 1 MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 55567789999998887653 478999999999987665443
No 53
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=31.51 E-value=1.2e+02 Score=20.28 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=39.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhh
Q 026635 147 LKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQK 200 (235)
Q Consensus 147 ~~~~ps~iA~a~l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~ 200 (235)
+.++.=+-++||+|.+.+..+ ...-...+...+|+...+.......|-++...
T Consensus 41 ~D~s~P~f~aaA~~~acr~~K-~kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 41 LDLSRPLFTSAALLSACKILK-LKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp CCTTSHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCBCHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHHc-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 455555678888898877654 35556677788999999999999888777543
No 54
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=29.64 E-value=96 Score=21.94 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 026635 5 FDINEKMRAILIDWLIEVH 23 (235)
Q Consensus 5 ~~i~~~~R~~~v~wm~~~~ 23 (235)
++|+...=..+++|+..-.
T Consensus 42 ~~V~~~iL~kVieyc~~h~ 60 (141)
T 1fs1_B 42 PNVNAAILKKVIQWCTHHK 60 (141)
T ss_dssp TTCCHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 3577777778888886543
No 55
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=29.50 E-value=1.3e+02 Score=20.46 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 026635 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRF 43 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~ 43 (235)
.|+++.|...++-|.+....++++.+.......++.+.
T Consensus 77 ~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~~~~~~~~ 114 (123)
T 2bmm_A 77 RIGAEERDRWLTHMRAAVDDLALPAHLEQQLWEYLVYA 114 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999998888777766666654
No 56
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=28.99 E-value=1.4e+02 Score=20.49 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 026635 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRF 43 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~ 43 (235)
.|+++.|...++-|.+.....+++.+.......++.+.
T Consensus 79 ~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~~ 116 (128)
T 2bkm_A 79 EITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLT 116 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 48888999999999888888888888777777777654
No 57
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=28.36 E-value=72 Score=21.85 Aligned_cols=38 Identities=3% Similarity=0.117 Sum_probs=30.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 026635 4 QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLID 41 (235)
Q Consensus 4 q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~D 41 (235)
+..|+++.+...++-|.+.....+++.+.......++.
T Consensus 75 ~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~l~~~~~ 112 (123)
T 2ksc_A 75 NAGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVG 112 (123)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34699999999999999999999998876665555544
No 58
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=27.84 E-value=1.4e+02 Score=27.39 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhccc-----cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhc
Q 026635 18 WLIEVHDKFDLMSETLFLSINLIDRFLSQQ-----QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISD 84 (235)
Q Consensus 18 wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~-----~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~ 84 (235)
...++|..++++..|..-|...+...-... .+.++..+.. +|++.|++--+..-.++..+++.++
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~--aC~ly~~~~~~gn~vsLt~lLr~~~ 76 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWG--ICIFIAAVDLDEMSFTFTELQKNIE 76 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHH--HHHHHHHHHTTCCCSCHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhh--hhhheeeeeccCCeeeHHHHHHHhc
Confidence 356789999999999999999998876422 2334444444 4556555544444667777766554
No 59
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=27.69 E-value=1.8e+02 Score=24.93 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCh-hHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhc
Q 026635 15 LIDWLIEVHDKFDLMS-ETLFLSINLIDRFLSQQ--QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISD 84 (235)
Q Consensus 15 ~v~wm~~~~~~~~l~~-~t~~~Av~l~Dr~l~~~--~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~ 84 (235)
.---|.++|.+++++. +....--..|+..+... -+...++--+..+|+|+-||+... ..+.++++....
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~-~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNI-DLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHH
Confidence 3445778899998765 44445556777776543 256666888999999999999864 567777776543
No 60
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.06 E-value=81 Score=16.69 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHH------HHHHHcCCChhHHHHHH
Q 026635 5 FDINEKMRAILIDWLI------EVHDKFDLMSETLFLSI 37 (235)
Q Consensus 5 ~~i~~~~R~~~v~wm~------~~~~~~~l~~~t~~~Av 37 (235)
+.++++.|..++.... +++..++++..|++.-+
T Consensus 4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4688888888877653 68899999988887543
No 61
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=24.20 E-value=1.7e+02 Score=20.24 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=30.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 026635 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRF 43 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~ 43 (235)
.|+++.|...++-|.+....++++.+.......++.+.
T Consensus 80 ~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~~ 117 (132)
T 1ux8_A 80 PITNERADAWLSCMKDAMDHVGLEGEIREFLFGRLELT 117 (132)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 48888888888888888888888887777776666654
No 62
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=22.44 E-value=1.6e+02 Score=19.92 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 026635 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDR 42 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr 42 (235)
.|+++.|...++-|.+....++++.+........+.+
T Consensus 77 ~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~ 113 (121)
T 3aq9_A 77 NLQNLHFDAIIENLAATLKELGVTDAVINEAAKVIEH 113 (121)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5889999999999999999999888766665555544
No 63
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=21.71 E-value=2.4e+02 Score=25.78 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCCh-hHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHHhhhccccccccHhhHHHhhcC
Q 026635 15 LIDWLIEVHDKFDLMS-ETLFLSINLIDRFLSQQ--QVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDK 85 (235)
Q Consensus 15 ~v~wm~~~~~~~~l~~-~t~~~Av~l~Dr~l~~~--~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~~~~~ 85 (235)
...-+.++|.+++++. +.....-.+|+..+... -+...++-.+.++|++.-||+... ..+.++++.....
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~-~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNI-DLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccC-CcCHHHHHHHHHh
Confidence 3456788999998764 45556777888887654 256677889999999999999875 6777888765443
No 64
>2xyk_A 2-ON-2 hemoglobin; oxygen storage-transport complex; HET: HEM; 2.10A {Agrobacterium tumefaciens}
Probab=21.65 E-value=2.1e+02 Score=19.86 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 026635 6 DINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRF 43 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~ 43 (235)
.|+++.|...++-|.+.....+++.+.......++.+.
T Consensus 84 ~I~~~~fd~Wl~~~~~al~e~~~~~~~~~~l~~~~~~~ 121 (133)
T 2xyk_A 84 PIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERL 121 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 48899999999999999999999888777777776654
No 65
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=21.37 E-value=1.7e+02 Score=19.95 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHHHHHH---HHcCCChhHHHHHHHHHHHh
Q 026635 6 DINEKMRAILIDWLIEVH---DKFDLMSETLFLSINLIDRF 43 (235)
Q Consensus 6 ~i~~~~R~~~v~wm~~~~---~~~~l~~~t~~~Av~l~Dr~ 43 (235)
.|+++.|...++-|.+.. ...+++.+.......++.+.
T Consensus 79 ~I~~~~f~~wl~~~~~al~~~~e~~~~~~~~~~~~~~~~~~ 119 (128)
T 2qrw_A 79 RISLIERDAFLRCMHTAVASIDSETLDDEHRRELLDYLEMA 119 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 477888888888888877 77777777666666655543
No 66
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=20.21 E-value=60 Score=20.01 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=25.6
Q ss_pred CCCCCchhhhhhcCCCHHHHH--HHHHHHHHHHhhcCC
Q 026635 168 GFKQWSKTCQWHSGYSEDQLL--ECATLMIGFHQKAAT 203 (235)
Q Consensus 168 ~~~~w~~~l~~~t~~~~~~i~--~~~~~i~~~~~~~~~ 203 (235)
.++.|...+. .+|++++++. +.+..+++++++.++
T Consensus 23 lp~eW~~ll~-~sGIs~~~~k~~et~~~I~~F~~~~gG 59 (65)
T 2lnh_A 23 LDPELKNLFD-MCGISEAQLKDRETSKVIYDFIEKTGG 59 (65)
T ss_dssp CCTTHHHHHH-HHTCCHHHHTCTTTHHHHHHHHHHHCC
T ss_pred CCHHHHHHHH-HcCCCHHHHHCHHHHHHHHHHHHHcCC
Confidence 4466766665 4699999984 668888898876654
Done!