RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026636
(235 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 193 bits (491), Expect = 3e-62
Identities = 110/236 (46%), Positives = 155/236 (65%), Gaps = 3/236 (1%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVCTSV 59
MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC S+
Sbjct: 12 MRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISI 71
Query: 60 NECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCL 118
NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G L ++T++ L
Sbjct: 72 NEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESL 131
Query: 119 HKAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGR 178
+ A+ + PG+ ++IG IQ + + VVR++ GHGIGR FH +P VLHY + +
Sbjct: 132 YLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNV 191
Query: 179 MVL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILT 233
++ TFTIEPM+ G D WT+ T+D SLSAQ+EHTI++T +G EILT
Sbjct: 192 VLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT 247
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 163 bits (412), Expect = 1e-50
Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 2/236 (0%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
M+ +G+ A L ++ PG T +++ V ++ P+ GYGG+ + C SVN
Sbjct: 13 MKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVN 72
Query: 61 ECICHGIPD-SRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
E + HG+P + ++GD +++DV G +GD + T+ G+ D+ + LV+VT++ L
Sbjct: 73 EEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLE 132
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRM 179
KAI + PG+ + IQ+ + + V+R +VGHG+GR H DP + +Y G +
Sbjct: 133 KAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVV 192
Query: 180 VL-NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
+ T IEPM++ G V+ +D WT VT DGS A FEHTILIT +GAEILT+
Sbjct: 193 LRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILTK 248
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 160 bits (404), Expect = 7e-49
Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 24/245 (9%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
R + QV +Y + +KPG+T EI + + FP +
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNC 119
Query: 61 ECI-CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
D+ L+ D ID +++G D + F + + L+K KD +
Sbjct: 120 AAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCA---FTVTFNPKYDTLLKAVKDATN 176
Query: 120 KAISVCAPGMEYKKIGKTIQDH---------ADRYNYGVVRQFVGHGIGRVFH-ADPVVL 169
I + +G+ IQ+ Y +R GH IG+ A V
Sbjct: 177 TGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVP 236
Query: 170 HYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGA 229
+ + RM + + IE + G +V GS +AQFEHTIL+
Sbjct: 237 IVKGGEATRMEEGEVYAIETFGSTG----------KGVVDIKGSYTAQFEHTILLRPTCK 286
Query: 230 EILTQ 234
E++++
Sbjct: 287 EVVSR 291
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 132 bits (333), Expect = 8e-39
Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 3/237 (1%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
++ G + A+V KPGITT E+D ++ + GA +P+ FP C SVN
Sbjct: 12 LKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVN 71
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARN-LVKVTKDCLH 119
E + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + + V
Sbjct: 72 EEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFE 131
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVV--LHYRNNDHG 177
AI+ PG + IGK + + A + + V++ GHG+G H P ++ D
Sbjct: 132 NAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKT 191
Query: 178 RMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
+ IEP ++ + + W T D S AQ EHT+++T+DG + T+
Sbjct: 192 LLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTK 248
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 125 bits (314), Expect = 9e-36
Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 30/250 (12%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+R +G + A A +PG+ ++ +H +GA Y + V + N
Sbjct: 8 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGA-----RYPSYNTIVGSGEN 62
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATF-FCGDVDDEARNLVKVTKDCLH 119
CI H + + DGD + ID GY GD + TF G R + + + L
Sbjct: 63 GCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLE 122
Query: 120 KAISVCAPGM---------------EYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHA 164
++ + PG K+G D + R F HG+
Sbjct: 123 TSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGL 182
Query: 165 DP-VVLHYRNNDHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTIL 223
D V Y + + T+ P L + + + + + E I+
Sbjct: 183 DVHDVGVYGQDRSRILEPGMVLTVAPGL--------YIAPDAEVPEQYRGIGIRIEDDIV 234
Query: 224 ITRDGAEILT 233
IT G E LT
Sbjct: 235 ITETGNENLT 244
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 113 bits (282), Expect = 1e-31
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 25/236 (10%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+ +G +A +V E A L +PG+ E+ +++ +MI++ G P+ +
Sbjct: 6 LMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA---- 61
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
D+ L++GD + IDV V+++G+ DT+ T G +DE ++ K+ L+
Sbjct: 62 -HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDEL---MEAAKEALNA 117
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVLHYRNNDHGRMV 180
AISV G+E K++GK I++ + + + GH I R + + H V
Sbjct: 118 AISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYV 177
Query: 181 L--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQ 234
L F IEP TIG+ + AQFEHTI++ +D + T+
Sbjct: 178 LKEGDVFAIEPFATIGA---------------RNGIVAQFEHTIIVEKDSVIVTTE 218
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 107 bits (267), Expect = 2e-29
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 26/236 (11%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 60
+ + +A + + A + G E+ V ++ NGA F + +
Sbjct: 9 IEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPA-----FDTIIASGHR 63
Query: 61 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLHK 120
+ HG+ + +E GD + ID+ N Y+ D + T G +++ R + ++ + +
Sbjct: 64 SALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKR 123
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPV-VLHYRNNDHGRM 179
A+ PGM K++ ++ Y YG + H +G + D +
Sbjct: 124 AVEAAKPGMTAKELDSIAREIIKEYGYG---DYFIHSLGHGVGLEIHEWPRISQYDETVL 180
Query: 180 VLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 235
TIEP + I + E T+LIT +GA+ LT+
Sbjct: 181 KEGMVITIEPGIYI-----------------PKLGGVRIEDTVLITENGAKRLTKT 219
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 100 bits (250), Expect = 1e-26
Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 17/239 (7%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGYGGFPKSVCTSV 59
+R R+A + + E+ Q ++ A + + +
Sbjct: 11 IRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGI 70
Query: 60 NECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVKVTKDCLH 119
N H +R + GD ++++ + GY+ T F D+ L +V +
Sbjct: 71 NTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHE 130
Query: 120 KAISVCAPGMEYKKIGKTIQDHADRYNYGVVRQF-VGHGIGRVFHADPVVLHYRNNDHGR 178
+ + PG I + + + +++ R F GH G + H +
Sbjct: 131 AGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDID 190
Query: 179 MVL--NQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFEHTILITRDGAEILTQC 235
VL ++EPM +M + G+ + +++ +GAE +T+
Sbjct: 191 TVLEPGMVVSMEPM--------IMLPEGLP-----GAGGYREHDILIVNENGAENITKF 236
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 321
Score = 27.6 bits (60), Expect = 1.2
Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Query: 121 AISVCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGI------GRVFHADPVVLHYRNN 174
A S G + + Q GH + L R
Sbjct: 213 ARSKNIDGPYEIDPEYPLLTSWHDPRNSL--QKCGHASLVHTHTDEWYL---AHLVGRPL 267
Query: 175 DHGRMVLNQTFTIEPMLTIGSINPVMWDDNWTIVTEDGSLSAQFE 219
G + + P+ SI + W DNW V S E
Sbjct: 268 PVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPRVVGGKQGSVNVE 312
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 26.2 bits (57), Expect = 2.7
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 82 DVTVYLNGYHGDTSATFF------------------CGDVDDEARNLVKVTKDCLHKAIS 123
D+ + G HGD + + RN + L + +
Sbjct: 23 DINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQGSA 82
Query: 124 VCAPGMEYKKIGKTIQDHADRYNYGVVRQFVGHGIGRVFHADPVVL 169
AP ++ ++I R V +GI + F PV L
Sbjct: 83 FYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFVGVPVKL 128
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 25.3 bits (55), Expect = 3.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 71 RALEDGDTINIDVTVYLNG 89
A+E D + ID T ++G
Sbjct: 13 GAVEAEDRVTIDFTGSVDG 31
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 25.3 bits (55), Expect = 4.1
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 73 LEDGDTINIDVTVYLNGYHGDTSATFFCG 101
L+ G+ + + V Y + S + F G
Sbjct: 95 LQVGEEVWLAVNDYYDMVGIQGSDSVFSG 123
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 26.1 bits (57), Expect = 4.7
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 207 IVTEDGSLSAQFEHTILITRDGAEILTQC 235
+V DG+ EH+ DG ++
Sbjct: 302 VVGRDGTCGVVCEHS---PFDGIVLVQCT 327
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 348
Score = 25.6 bits (55), Expect = 5.8
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 127 PGMEYKKIGKTIQDHADRYNYGVVRQFVGHG-IGRVFHADPVVLHYRNNDHGRMV 180
P +++ KTI + +RY VG G G V A + G V
Sbjct: 2 PTFYRQELNKTIWEVPERY---QNLSPVGSGAYGSVCAA-------FDTKTGLRV 46
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.3 bits (54), Expect = 7.2
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN 39
R++ RL +V + + I TD + K + + ID+
Sbjct: 200 PRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 238
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 24.6 bits (53), Expect = 8.7
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 36 IIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTV-YLNGYHG 92
++D G + LGY G P+ + S C I +S + D + V L+ + G
Sbjct: 7 VVDCGTGYTKLGYAGNTEPQFIIPS-----CIAIKESAKVGDQAQRRVMKGVDDLDFFIG 61
Query: 93 D 93
D
Sbjct: 62 D 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.430
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 944,321
Number of extensions: 45567
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 25
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)