BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026637
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1
SV=1
Length = 469
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
++ GI +F L+E AE+ AK+ L IN D WS H + H+ + K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ W S + HN+WH AL YL L IYD HI L+ DA+ V ++
Sbjct: 241 ETFWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAMLDVV--DSC 296
Query: 143 GLLLRVYVRG 152
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
>sp|Q5RFF7|TTC38_PONAB Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2
SV=1
Length = 469
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
++ GI +F L+E AE+ AK+ L IN D WS H + H+ + K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ W S + HN+WH AL YL L IYD HI L+ A+ V ++
Sbjct: 241 ETLWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAMLDVV--DSC 296
Query: 143 GLLLRVYVRG 152
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
>sp|A3KMP2|TTC38_MOUSE Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2
SV=2
Length = 465
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G + D + +V P+ + ++ GI +F L+E A++ AK+ L I D
Sbjct: 151 LGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDA 210
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
WS H + HV + K+ ++FM++ W S + HN+WH AL YL L
Sbjct: 211 WSVHTVAHVHEMRAEIKDGLEFMQQSEGHWKD-SDMLACHNYWHWAL-YLIEKGDYEAAL 268
Query: 117 EIYDNHIWKELE 128
IYD+HI L+
Sbjct: 269 TIYDSHILPSLQ 280
>sp|A2VD82|TTC38_XENLA Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2
SV=1
Length = 469
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G D + +VLPY + E ++ G+ +F LLE A + AK+ L + + D
Sbjct: 154 LGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDS 213
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
WS H + HV + + FM+E + W S + H +WH AL YL L
Sbjct: 214 WSVHTIAHVHEMKADLDSGLSFMQETENNWKG-SDMLACHVYWHWAL-YLIEKGDYEAAL 271
Query: 117 EIYDNHI 123
+YDNHI
Sbjct: 272 TLYDNHI 278
>sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38
PE=2 SV=1
Length = 469
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 9 DIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64
D + +VLPY ++ G+ +F LLE A + AK+ L +++ D WS H + H
Sbjct: 162 DSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDSWSVHTVAH 221
Query: 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124
V + + FM+E + W S + H +WH AL ++E L +YDNHI
Sbjct: 222 VHEMRADLDSGLAFMQETENNWKG-SDMLACHVYWHWALYFIE-KGDYEAALTLYDNHI- 278
Query: 125 KELEKPDAVHPEVYLNAL---GLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLD 181
P L+ + +L R+ + G ++V G+R K L ++ D
Sbjct: 279 ----APQCFASGTMLDVVDNSSMLYRLQLEG-VNV-GDRWKNLLQITKSHTQDHMLIFND 332
Query: 182 LLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 223
L L +++ G SK ED+ + L ++ K E Q G+
Sbjct: 333 LHFL--MSSLG--SKDEDMTRELVESMQELSKSPGENQQHGL 370
>sp|A3KPN8|TTC38_DANRE Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3
SV=1
Length = 466
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 20/238 (8%)
Query: 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52
+G D + +V+P Y Q I G+ +F LLE +AE+ AK+ L +
Sbjct: 154 LGEQTQMRDSVARVMPHWKPHMPLYRQ----IKGMYSFGLLETRLYDEAEKMAKEALSLT 209
Query: 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112
D WS HA+ HV + ++ + FM W+ C + HN+WH AL ++E +
Sbjct: 210 PEDGWSVHAVAHVHEMKAEVEKGLNFMASTEKNWTVC-DMLACHNYWHWALYHIEKGN-Y 267
Query: 113 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQA 172
L+I+D + + K A+ V ++ LL R+ + G G R + L +
Sbjct: 268 EAALKIFDEQVSQRCVKSGAMLDIV--DSCSLLYRLELEGV--SVGERYRELLQVTQPHS 323
Query: 173 NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDIC 230
+ DL L + + + LL+ L+ + +Q +Q +V +C
Sbjct: 324 EDHTLLFNDLHFLMVSLGSKDTGTTQRLLESLQELAKDPAENRQ--LQIAERVGLPMC 379
>sp|P21548|GBRG2_CHICK Gamma-aminobutyric acid receptor subunit gamma-2 OS=Gallus gallus
GN=GABRG2 PE=2 SV=1
Length = 474
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 157
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 69 LNGLLEGYDNKLRPDIGVKPTVIHTDMYVNSIGPVNAINMEYTIDIF 115
>sp|P18508|GBRG2_RAT Gamma-aminobutyric acid receptor subunit gamma-2 OS=Rattus
norvegicus GN=Gabrg2 PE=1 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 157
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 69 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 115
>sp|P22723|GBRG2_MOUSE Gamma-aminobutyric acid receptor subunit gamma-2 OS=Mus musculus
GN=Gabrg2 PE=1 SV=3
Length = 474
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 157
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 69 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 115
>sp|P22300|GBRG2_BOVIN Gamma-aminobutyric acid receptor subunit gamma-2 OS=Bos taurus
GN=GABRG2 PE=2 SV=1
Length = 475
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 112 MRKVLEIYDNHIWKELE-KPDAVHPEVYLNALGLLLRVYVRGELDVF 157
+ +LE YDN + ++ KP +H ++Y+N++G + + + +D+F
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIF 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,523,701
Number of Sequences: 539616
Number of extensions: 3537512
Number of successful extensions: 9779
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9766
Number of HSP's gapped (non-prelim): 20
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)