Query 026637
Match_columns 235
No_of_seqs 190 out of 286
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2610 Uncharacterized conser 100.0 4.5E-41 9.6E-46 303.3 14.4 214 1-229 150-370 (491)
2 cd05804 StaR_like StaR_like; a 100.0 4.1E-27 8.9E-32 212.2 24.7 224 3-232 95-318 (355)
3 PRK12370 invasion protein regu 99.5 1.5E-11 3.2E-16 119.5 22.4 118 2-125 318-435 (553)
4 PRK15359 type III secretion sy 99.4 2.1E-12 4.5E-17 104.7 13.3 110 8-126 13-122 (144)
5 PRK12370 invasion protein regu 99.4 2.1E-11 4.5E-16 118.4 18.3 117 3-125 276-401 (553)
6 TIGR00990 3a0801s09 mitochondr 99.4 6.1E-11 1.3E-15 116.0 21.7 209 1-231 378-590 (615)
7 PRK10370 formate-dependent nit 99.3 5.2E-11 1.1E-15 101.6 15.6 119 2-126 53-174 (198)
8 PRK15179 Vi polysaccharide bio 99.3 6.3E-11 1.4E-15 118.2 15.7 156 1-164 99-258 (694)
9 PRK09782 bacteriophage N4 rece 99.3 4.3E-11 9.3E-16 123.3 14.5 119 1-126 589-707 (987)
10 COG3063 PilF Tfp pilus assembl 99.3 6.9E-11 1.5E-15 103.0 11.9 121 2-126 49-169 (250)
11 PRK15359 type III secretion sy 99.2 5.4E-11 1.2E-15 96.4 10.2 90 1-90 37-126 (144)
12 TIGR02521 type_IV_pilW type IV 99.2 1.5E-09 3.3E-14 89.1 18.8 121 1-125 44-164 (234)
13 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-10 4.7E-15 103.0 14.4 118 1-125 77-194 (296)
14 KOG4626 O-linked N-acetylgluco 99.2 1.3E-10 2.7E-15 112.8 13.3 118 2-125 300-417 (966)
15 PRK15174 Vi polysaccharide exp 99.2 5.4E-10 1.2E-14 110.8 17.3 147 2-154 260-421 (656)
16 TIGR02552 LcrH_SycD type III s 99.2 1.1E-09 2.4E-14 85.7 14.1 112 9-126 4-115 (135)
17 TIGR00990 3a0801s09 mitochondr 99.1 1.1E-09 2.3E-14 107.4 14.9 119 1-125 344-462 (615)
18 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-09 2.6E-14 98.2 13.9 118 2-125 40-161 (296)
19 PF13429 TPR_15: Tetratricopep 99.1 5.7E-10 1.2E-14 98.5 11.4 135 2-147 124-260 (280)
20 PRK15174 Vi polysaccharide exp 99.1 4.1E-09 8.8E-14 104.6 18.2 119 1-125 225-347 (656)
21 PRK11906 transcriptional regul 99.1 1.3E-09 2.9E-14 103.1 13.3 116 4-125 274-401 (458)
22 TIGR02521 type_IV_pilW type IV 99.1 6.6E-09 1.4E-13 85.3 14.2 119 1-125 78-198 (234)
23 PRK11906 transcriptional regul 99.0 3.4E-09 7.5E-14 100.3 12.7 127 3-142 319-446 (458)
24 KOG4626 O-linked N-acetylgluco 99.0 3.2E-09 6.8E-14 103.3 12.5 157 2-172 368-524 (966)
25 PF13429 TPR_15: Tetratricopep 99.0 4E-10 8.7E-15 99.5 6.0 118 1-124 159-276 (280)
26 TIGR02917 PEP_TPR_lipo putativ 99.0 7.2E-09 1.6E-13 101.1 14.3 120 1-127 749-868 (899)
27 PRK11788 tetratricopeptide rep 99.0 1.3E-07 2.9E-12 86.1 21.0 123 2-125 83-209 (389)
28 KOG1126 DNA-binding cell divis 99.0 1.7E-09 3.6E-14 105.2 8.7 136 2-148 435-570 (638)
29 PRK11788 tetratricopeptide rep 99.0 1.1E-07 2.3E-12 86.7 20.2 118 2-125 121-243 (389)
30 TIGR02917 PEP_TPR_lipo putativ 99.0 2.3E-08 4.9E-13 97.6 16.4 117 1-125 716-832 (899)
31 PRK11447 cellulose synthase su 98.9 6.2E-08 1.3E-12 101.6 20.1 119 1-125 282-414 (1157)
32 PRK09782 bacteriophage N4 rece 98.9 2.1E-08 4.6E-13 103.6 16.1 118 1-125 555-672 (987)
33 PLN03088 SGT1, suppressor of 98.9 1.5E-08 3.2E-13 93.8 12.5 103 1-106 15-117 (356)
34 COG5010 TadD Flp pilus assembl 98.9 1.6E-08 3.4E-13 89.4 11.8 118 2-125 114-231 (257)
35 PRK15179 Vi polysaccharide bio 98.9 2.6E-08 5.7E-13 99.6 14.8 113 7-125 71-183 (694)
36 PRK11447 cellulose synthase su 98.9 1.4E-07 3E-12 99.0 20.2 188 1-209 474-702 (1157)
37 TIGR02552 LcrH_SycD type III s 98.9 1.4E-08 3.1E-13 79.4 9.7 90 1-90 30-119 (135)
38 cd05804 StaR_like StaR_like; a 98.9 2.2E-07 4.9E-12 83.7 18.5 210 1-218 127-347 (355)
39 PRK15363 pathogenicity island 98.9 3.2E-08 6.8E-13 82.0 11.7 102 19-126 32-133 (157)
40 PRK10049 pgaA outer membrane p 98.8 1.6E-07 3.5E-12 94.7 18.2 115 2-123 63-177 (765)
41 PRK10370 formate-dependent nit 98.8 2.5E-08 5.5E-13 85.1 10.6 90 1-90 86-178 (198)
42 TIGR03302 OM_YfiO outer membra 98.8 8.7E-08 1.9E-12 82.0 12.8 124 1-125 46-195 (235)
43 PLN02789 farnesyltranstransfer 98.8 1E-07 2.2E-12 87.3 13.9 118 2-125 51-171 (320)
44 PRK10049 pgaA outer membrane p 98.8 1.6E-07 3.6E-12 94.6 16.6 119 1-126 28-146 (765)
45 TIGR03302 OM_YfiO outer membra 98.8 2.4E-07 5.3E-12 79.2 15.1 107 16-125 27-144 (235)
46 cd00189 TPR Tetratricopeptide 98.8 1E-07 2.2E-12 65.9 10.4 96 24-125 2-97 (100)
47 COG5010 TadD Flp pilus assembl 98.8 2.3E-07 4.9E-12 82.1 14.9 136 1-148 79-214 (257)
48 PF13414 TPR_11: TPR repeat; P 98.8 3.3E-08 7.1E-13 69.2 7.4 68 20-87 1-69 (69)
49 CHL00033 ycf3 photosystem I as 98.8 1.6E-07 3.5E-12 77.1 12.7 116 4-125 15-142 (168)
50 KOG0547 Translocase of outer m 98.8 6.3E-08 1.4E-12 92.2 11.4 118 3-126 375-492 (606)
51 PF13432 TPR_16: Tetratricopep 98.8 2.3E-08 4.9E-13 69.4 6.3 63 27-89 2-64 (65)
52 cd00189 TPR Tetratricopeptide 98.7 1.5E-07 3.2E-12 65.1 8.8 87 1-87 13-99 (100)
53 KOG0553 TPR repeat-containing 98.7 8.1E-08 1.8E-12 86.5 9.0 87 2-88 95-181 (304)
54 COG4783 Putative Zn-dependent 98.7 5.4E-07 1.2E-11 85.6 14.5 150 1-168 319-469 (484)
55 PF09976 TPR_21: Tetratricopep 98.7 1.3E-06 2.7E-11 70.3 14.3 115 2-123 25-145 (145)
56 PRK10153 DNA-binding transcrip 98.6 3E-07 6.6E-12 89.2 12.5 112 5-125 401-514 (517)
57 PRK10153 DNA-binding transcrip 98.6 2E-07 4.2E-12 90.5 11.2 115 4-125 358-482 (517)
58 TIGR00540 hemY_coli hemY prote 98.6 4.1E-07 9E-12 85.2 12.5 118 1-125 276-399 (409)
59 TIGR02795 tol_pal_ybgF tol-pal 98.6 3.6E-07 7.8E-12 68.9 10.0 99 24-125 4-105 (119)
60 PLN03088 SGT1, suppressor of 98.6 2.9E-07 6.4E-12 85.2 11.3 93 28-126 8-100 (356)
61 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.1E-06 2.4E-11 66.2 12.5 89 1-89 15-109 (119)
62 COG3063 PilF Tfp pilus assembl 98.6 5.4E-07 1.2E-11 78.8 11.7 97 24-126 37-133 (250)
63 PF12895 Apc3: Anaphase-promot 98.6 2.3E-07 5.1E-12 67.8 8.1 81 34-121 1-83 (84)
64 PRK02603 photosystem I assembl 98.6 3.1E-06 6.6E-11 69.9 14.6 100 6-111 17-121 (172)
65 TIGR00540 hemY_coli hemY prote 98.5 1.2E-05 2.7E-10 75.2 19.7 192 2-206 98-291 (409)
66 PF13432 TPR_16: Tetratricopep 98.5 2.3E-07 5E-12 64.3 6.0 56 1-56 10-65 (65)
67 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.2E-07 9.2E-12 86.2 9.4 69 17-85 70-141 (453)
68 CHL00033 ycf3 photosystem I as 98.5 1E-06 2.2E-11 72.4 10.3 82 1-82 48-139 (168)
69 PRK15363 pathogenicity island 98.5 8.8E-07 1.9E-11 73.4 9.4 86 1-86 48-133 (157)
70 KOG1155 Anaphase-promoting com 98.5 1.5E-06 3.2E-11 82.5 11.6 119 2-126 344-462 (559)
71 KOG1126 DNA-binding cell divis 98.4 1E-06 2.3E-11 86.0 9.8 117 3-125 470-586 (638)
72 PF12688 TPR_5: Tetratrico pep 98.4 7.2E-06 1.6E-10 65.1 12.5 100 23-125 2-104 (120)
73 PF14559 TPR_19: Tetratricopep 98.4 1.4E-06 3E-11 60.5 6.7 58 32-89 1-58 (68)
74 PRK10803 tol-pal system protei 98.3 1.4E-05 3E-10 71.4 13.7 102 22-126 142-247 (263)
75 PRK14574 hmsH outer membrane p 98.3 1.2E-05 2.6E-10 82.1 14.7 116 1-125 81-198 (822)
76 PF12895 Apc3: Anaphase-promot 98.3 1.6E-06 3.5E-11 63.3 5.4 81 1-82 2-84 (84)
77 PRK10747 putative protoheme IX 98.3 0.0001 2.2E-09 69.0 18.7 187 2-206 98-291 (398)
78 PRK14574 hmsH outer membrane p 98.2 9.8E-05 2.1E-09 75.5 19.3 117 2-125 48-165 (822)
79 PF13371 TPR_9: Tetratricopept 98.2 4E-06 8.7E-11 59.0 6.6 60 30-89 3-62 (73)
80 PLN02789 farnesyltranstransfer 98.2 1.7E-05 3.7E-10 72.7 12.3 117 3-125 87-212 (320)
81 KOG0553 TPR repeat-containing 98.2 1.2E-05 2.7E-10 72.6 10.9 144 24-180 83-226 (304)
82 PF13414 TPR_11: TPR repeat; P 98.2 1.7E-06 3.6E-11 60.4 4.0 53 1-53 16-69 (69)
83 PRK02603 photosystem I assembl 98.2 1.2E-05 2.7E-10 66.3 9.7 76 1-76 48-126 (172)
84 PF13371 TPR_9: Tetratricopept 98.2 7.3E-06 1.6E-10 57.6 7.0 62 2-63 9-70 (73)
85 PF13428 TPR_14: Tetratricopep 98.2 4.2E-06 9.1E-11 54.3 5.3 43 22-64 1-43 (44)
86 KOG4162 Predicted calmodulin-b 98.2 2.2E-05 4.8E-10 78.1 12.6 119 2-126 664-784 (799)
87 PRK10747 putative protoheme IX 98.2 2.4E-05 5.2E-10 73.2 12.0 115 1-125 276-390 (398)
88 PF14559 TPR_19: Tetratricopep 98.1 4.4E-06 9.5E-11 58.0 5.1 63 1-63 4-66 (68)
89 COG4235 Cytochrome c biogenesi 98.1 4.6E-05 9.9E-10 68.8 12.8 116 4-125 138-256 (287)
90 KOG1155 Anaphase-promoting com 98.1 0.00027 5.8E-09 67.5 18.1 177 1-207 377-553 (559)
91 KOG1125 TPR repeat-containing 98.1 1.8E-05 3.9E-10 76.6 9.0 114 7-126 413-528 (579)
92 KOG1129 TPR repeat-containing 98.0 5.2E-05 1.1E-09 69.9 11.2 187 3-208 271-459 (478)
93 PRK04841 transcriptional regul 98.0 0.0003 6.4E-09 71.5 17.9 124 1-125 504-641 (903)
94 KOG1173 Anaphase-promoting com 98.0 4.2E-05 9.1E-10 74.1 10.9 119 2-126 394-519 (611)
95 PF12688 TPR_5: Tetratrico pep 98.0 7.6E-05 1.6E-09 59.2 10.5 84 1-84 14-103 (120)
96 KOG0547 Translocase of outer m 98.0 3.7E-05 8.1E-10 73.6 10.0 130 3-144 443-579 (606)
97 PF13424 TPR_12: Tetratricopep 98.0 9.6E-06 2.1E-10 57.9 4.6 64 22-85 5-75 (78)
98 PRK10803 tol-pal system protei 98.0 3.8E-05 8.2E-10 68.6 9.4 88 2-89 157-250 (263)
99 PRK15331 chaperone protein Sic 98.0 5.9E-05 1.3E-09 63.0 9.7 97 23-125 38-134 (165)
100 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00018 4E-09 67.8 13.8 110 2-120 183-292 (395)
101 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.3E-10 50.0 3.4 32 45-76 2-33 (34)
102 KOG1174 Anaphase-promoting com 97.9 3.7E-05 8.1E-10 72.5 8.5 118 2-126 382-501 (564)
103 PRK04841 transcriptional regul 97.9 0.0012 2.7E-08 67.0 19.1 124 1-125 465-602 (903)
104 KOG1840 Kinesin light chain [C 97.9 0.00093 2E-08 65.0 16.9 198 1-205 254-477 (508)
105 KOG3060 Uncharacterized conser 97.8 0.00028 6E-09 62.9 11.7 118 2-125 66-183 (289)
106 KOG4162 Predicted calmodulin-b 97.8 0.00017 3.7E-09 72.0 11.0 114 4-123 460-574 (799)
107 PRK10866 outer membrane biogen 97.8 0.00092 2E-08 58.9 14.3 144 2-153 46-227 (243)
108 KOG1156 N-terminal acetyltrans 97.8 0.0015 3.3E-08 64.4 16.8 193 1-207 54-248 (700)
109 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00012 2.5E-09 69.9 8.7 72 50-125 69-141 (453)
110 KOG1840 Kinesin light chain [C 97.8 0.0017 3.7E-08 63.2 16.8 209 18-229 195-419 (508)
111 COG4783 Putative Zn-dependent 97.7 0.005 1.1E-07 59.0 19.4 153 21-210 305-457 (484)
112 KOG4555 TPR repeat-containing 97.7 0.00063 1.4E-08 55.5 11.2 101 23-125 44-144 (175)
113 KOG1125 TPR repeat-containing 97.7 0.00013 2.8E-09 70.8 8.3 87 2-88 444-530 (579)
114 KOG1173 Anaphase-promoting com 97.7 0.00018 4E-09 69.8 8.9 122 4-126 362-485 (611)
115 KOG2002 TPR-containing nuclear 97.7 0.00022 4.8E-09 72.7 9.6 138 3-149 627-764 (1018)
116 PLN03081 pentatricopeptide (PP 97.7 0.0016 3.5E-08 65.0 15.7 115 2-125 273-389 (697)
117 KOG2076 RNA polymerase III tra 97.7 0.00072 1.6E-08 68.5 13.0 113 23-146 138-252 (895)
118 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0004 8.7E-09 65.6 9.7 82 1-82 213-294 (395)
119 PF12569 NARP1: NMDA receptor- 97.6 0.0012 2.5E-08 64.5 13.1 124 1-125 207-334 (517)
120 PF07719 TPR_2: Tetratricopept 97.6 0.00017 3.7E-09 43.2 4.8 34 22-55 1-34 (34)
121 PF13525 YfiO: Outer membrane 97.6 0.0011 2.5E-08 56.4 11.4 142 1-150 18-189 (203)
122 KOG2002 TPR-containing nuclear 97.5 0.0011 2.4E-08 67.8 12.6 122 1-125 212-336 (1018)
123 PRK14720 transcript cleavage f 97.5 0.00069 1.5E-08 69.7 11.4 118 1-127 44-180 (906)
124 PF13424 TPR_12: Tetratricopep 97.5 0.00024 5.1E-09 50.6 5.8 72 53-125 2-75 (78)
125 PLN03218 maturation of RBCL 1; 97.5 0.018 4E-07 60.6 21.5 118 2-125 556-678 (1060)
126 COG4235 Cytochrome c biogenesi 97.5 0.00094 2E-08 60.4 9.7 89 1-89 169-260 (287)
127 COG1729 Uncharacterized protei 97.4 0.0021 4.5E-08 57.5 11.7 99 25-126 144-245 (262)
128 PLN03218 maturation of RBCL 1; 97.4 0.014 3E-07 61.6 19.4 81 2-83 486-569 (1060)
129 COG2956 Predicted N-acetylgluc 97.4 0.0078 1.7E-07 55.5 15.0 118 3-125 156-278 (389)
130 KOG0548 Molecular co-chaperone 97.4 0.00067 1.5E-08 65.5 8.5 88 2-89 372-459 (539)
131 PF09976 TPR_21: Tetratricopep 97.4 0.0013 2.7E-08 52.8 8.8 81 1-82 61-144 (145)
132 KOG0543 FKBP-type peptidyl-pro 97.4 0.0019 4.2E-08 60.6 11.1 120 2-126 222-356 (397)
133 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00052 1.1E-08 60.3 6.3 89 2-90 79-167 (297)
134 PLN03077 Protein ECB2; Provisi 97.3 0.023 5E-07 58.0 19.2 90 101-205 560-652 (857)
135 PF12569 NARP1: NMDA receptor- 97.3 0.0088 1.9E-07 58.4 15.4 143 23-183 195-346 (517)
136 PLN03081 pentatricopeptide (PP 97.3 0.012 2.7E-07 58.6 16.8 193 2-208 339-558 (697)
137 PF03704 BTAD: Bacterial trans 97.3 0.0042 9.1E-08 49.4 10.6 85 2-86 20-126 (146)
138 PF06552 TOM20_plant: Plant sp 97.3 0.00097 2.1E-08 56.6 7.0 85 4-88 7-112 (186)
139 PF00515 TPR_1: Tetratricopept 97.2 0.00059 1.3E-08 41.1 4.1 33 23-55 2-34 (34)
140 KOG2076 RNA polymerase III tra 97.2 0.0066 1.4E-07 61.8 13.5 114 2-121 153-266 (895)
141 PLN03077 Protein ECB2; Provisi 97.2 0.053 1.1E-06 55.4 20.2 182 2-208 538-721 (857)
142 KOG1174 Anaphase-promoting com 97.2 0.027 5.8E-07 53.7 16.3 156 2-174 314-471 (564)
143 KOG0495 HAT repeat protein [RN 97.1 0.011 2.4E-07 58.9 13.6 117 1-125 664-782 (913)
144 PRK10866 outer membrane biogen 97.1 0.011 2.4E-07 52.0 12.7 104 21-126 31-154 (243)
145 KOG1128 Uncharacterized conser 97.1 0.0046 1E-07 61.8 10.8 140 2-150 499-638 (777)
146 KOG2376 Signal recognition par 97.1 0.0056 1.2E-07 60.0 11.0 176 2-204 26-201 (652)
147 PF04733 Coatomer_E: Coatomer 97.0 0.0031 6.7E-08 57.1 8.7 86 4-89 183-269 (290)
148 COG2956 Predicted N-acetylgluc 97.0 0.02 4.3E-07 52.9 13.2 116 3-125 195-311 (389)
149 PF13512 TPR_18: Tetratricopep 96.9 0.0095 2.1E-07 48.7 9.7 103 21-126 9-129 (142)
150 KOG0548 Molecular co-chaperone 96.9 0.0037 8E-08 60.5 8.3 87 2-88 16-102 (539)
151 KOG0624 dsRNA-activated protei 96.9 0.0032 7E-08 58.6 7.4 103 18-126 34-136 (504)
152 PF04733 Coatomer_E: Coatomer 96.9 0.0045 9.7E-08 56.0 8.0 100 20-125 129-230 (290)
153 PF13512 TPR_18: Tetratricopep 96.8 0.032 6.9E-07 45.7 12.0 70 2-71 24-99 (142)
154 KOG0495 HAT repeat protein [RN 96.8 0.012 2.5E-07 58.8 11.0 116 2-125 598-714 (913)
155 PRK15331 chaperone protein Sic 96.8 0.0066 1.4E-07 50.8 7.8 85 1-85 50-134 (165)
156 PF13431 TPR_17: Tetratricopep 96.8 0.0012 2.6E-08 40.7 2.4 33 11-43 2-34 (34)
157 KOG4234 TPR repeat-containing 96.7 0.0087 1.9E-07 52.2 8.0 87 2-88 109-200 (271)
158 KOG2003 TPR repeat-containing 96.7 0.015 3.2E-07 56.1 10.2 112 2-119 504-615 (840)
159 PF14938 SNAP: Soluble NSF att 96.6 0.0086 1.9E-07 53.4 8.2 123 2-126 49-185 (282)
160 PF13525 YfiO: Outer membrane 96.6 0.027 5.8E-07 47.9 10.9 104 21-126 4-120 (203)
161 KOG0624 dsRNA-activated protei 96.6 0.018 3.8E-07 53.9 10.0 123 2-125 52-184 (504)
162 KOG1127 TPR repeat-containing 96.6 0.013 2.9E-07 60.5 9.9 119 3-125 473-591 (1238)
163 PRK14720 transcript cleavage f 96.6 0.015 3.3E-07 60.1 10.3 140 14-169 108-247 (906)
164 COG1729 Uncharacterized protei 96.5 0.015 3.3E-07 52.1 8.6 90 1-90 154-249 (262)
165 COG4700 Uncharacterized protei 96.5 0.067 1.4E-06 46.3 12.0 115 4-123 72-187 (251)
166 COG0457 NrfG FOG: TPR repeat [ 96.5 0.13 2.9E-06 39.4 12.9 117 4-125 111-231 (291)
167 KOG0543 FKBP-type peptidyl-pro 96.4 0.011 2.3E-07 55.7 7.6 73 1-73 270-342 (397)
168 COG4700 Uncharacterized protei 96.4 0.075 1.6E-06 46.0 12.1 112 1-119 102-216 (251)
169 KOG0550 Molecular chaperone (D 96.4 0.011 2.3E-07 56.1 7.5 119 2-126 217-351 (486)
170 KOG1156 N-terminal acetyltrans 96.4 0.014 3E-07 57.8 8.2 109 3-117 22-130 (700)
171 KOG1129 TPR repeat-containing 96.4 0.018 3.9E-07 53.5 8.4 116 2-123 338-456 (478)
172 PF13181 TPR_8: Tetratricopept 96.3 0.0083 1.8E-07 35.8 4.1 32 24-55 3-34 (34)
173 PF10300 DUF3808: Protein of u 96.2 0.077 1.7E-06 51.1 12.3 119 2-125 202-334 (468)
174 COG0457 NrfG FOG: TPR repeat [ 96.2 0.29 6.3E-06 37.4 13.4 119 1-125 143-265 (291)
175 KOG4642 Chaperone-dependent E3 96.1 0.021 4.6E-07 50.8 7.4 86 3-88 25-110 (284)
176 KOG2376 Signal recognition par 96.1 0.041 9E-07 54.1 10.0 106 34-154 24-129 (652)
177 COG4105 ComL DNA uptake lipopr 96.1 0.13 2.8E-06 45.9 12.2 123 2-126 48-197 (254)
178 KOG2003 TPR repeat-containing 96.1 0.14 3.1E-06 49.5 13.1 137 1-150 537-705 (840)
179 PF06552 TOM20_plant: Plant sp 95.9 0.051 1.1E-06 46.3 8.3 82 38-124 7-101 (186)
180 KOG2053 Mitochondrial inherita 95.9 0.056 1.2E-06 55.3 9.8 112 2-120 23-138 (932)
181 KOG0550 Molecular chaperone (D 95.8 0.024 5.2E-07 53.8 6.7 88 2-89 263-354 (486)
182 PF10300 DUF3808: Protein of u 95.7 0.1 2.3E-06 50.2 10.7 113 3-122 248-373 (468)
183 PF04184 ST7: ST7 protein; In 95.6 0.17 3.8E-06 49.1 11.8 131 4-145 184-339 (539)
184 KOG3060 Uncharacterized conser 95.6 0.22 4.7E-06 44.8 11.6 120 1-125 99-220 (289)
185 KOG1127 TPR repeat-containing 95.6 0.036 7.8E-07 57.4 7.4 92 28-125 568-659 (1238)
186 smart00028 TPR Tetratricopepti 95.6 0.029 6.3E-07 30.8 4.1 32 24-55 3-34 (34)
187 COG3071 HemY Uncharacterized e 95.6 0.17 3.7E-06 47.7 11.2 116 1-126 276-391 (400)
188 COG3118 Thioredoxin domain-con 95.5 0.55 1.2E-05 42.9 14.0 115 6-126 121-266 (304)
189 PF07719 TPR_2: Tetratricopept 95.5 0.036 7.8E-07 32.7 4.4 33 56-88 1-33 (34)
190 COG3118 Thioredoxin domain-con 95.4 0.37 8.1E-06 44.0 12.5 85 2-86 148-266 (304)
191 KOG4648 Uncharacterized conser 95.4 0.042 9.1E-07 51.4 6.4 88 2-89 111-198 (536)
192 PF14938 SNAP: Soluble NSF att 95.4 0.079 1.7E-06 47.2 8.1 122 2-125 88-225 (282)
193 COG3071 HemY Uncharacterized e 95.3 0.11 2.4E-06 48.9 9.1 83 2-85 308-390 (400)
194 KOG4555 TPR repeat-containing 95.2 0.17 3.7E-06 41.5 8.8 85 2-86 57-145 (175)
195 PF14561 TPR_20: Tetratricopep 95.1 0.23 5E-06 37.2 8.7 78 42-124 8-86 (90)
196 COG2976 Uncharacterized protei 95.0 0.48 1E-05 41.0 11.4 110 8-125 72-188 (207)
197 PRK10941 hypothetical protein; 94.9 0.14 3.1E-06 46.0 8.5 68 23-90 182-249 (269)
198 PRK10941 hypothetical protein; 94.7 0.15 3.3E-06 45.8 7.9 69 2-70 195-263 (269)
199 PF13428 TPR_14: Tetratricopep 94.6 0.054 1.2E-06 34.7 3.7 35 56-90 1-35 (44)
200 PF13176 TPR_7: Tetratricopept 94.6 0.069 1.5E-06 32.8 4.0 29 24-52 1-29 (36)
201 PF05843 Suf: Suppressor of fo 94.5 0.43 9.2E-06 42.7 10.5 119 4-125 17-136 (280)
202 PF00515 TPR_1: Tetratricopept 94.5 0.09 1.9E-06 31.3 4.3 33 56-88 1-33 (34)
203 COG4785 NlpI Lipoprotein NlpI, 94.1 0.2 4.3E-06 44.4 7.1 96 24-125 67-162 (297)
204 KOG2796 Uncharacterized conser 94.1 0.74 1.6E-05 41.9 10.8 118 2-125 191-315 (366)
205 PF14853 Fis1_TPR_C: Fis1 C-te 94.0 0.14 3.1E-06 34.8 4.9 39 24-62 3-41 (53)
206 PF10345 Cohesin_load: Cohesin 94.0 7.1 0.00015 38.7 19.3 179 21-210 58-257 (608)
207 KOG1308 Hsp70-interacting prot 94.0 0.023 5.1E-07 52.7 1.1 86 2-87 128-213 (377)
208 PF13174 TPR_6: Tetratricopept 93.8 0.14 3.1E-06 29.8 4.1 32 24-55 2-33 (33)
209 PF07721 TPR_4: Tetratricopept 93.7 0.096 2.1E-06 30.0 3.1 24 57-80 2-25 (26)
210 PF12968 DUF3856: Domain of Un 93.7 0.16 3.6E-06 40.8 5.3 62 21-82 54-126 (144)
211 COG2912 Uncharacterized conser 93.7 0.19 4.1E-06 45.2 6.3 68 23-90 182-249 (269)
212 PF13281 DUF4071: Domain of un 93.5 2.9 6.3E-05 39.5 14.1 143 2-153 196-359 (374)
213 KOG2796 Uncharacterized conser 93.3 0.23 5E-06 45.1 6.3 87 2-88 226-318 (366)
214 PF13374 TPR_10: Tetratricopep 93.2 0.18 3.8E-06 30.8 4.0 29 24-52 4-32 (42)
215 COG4976 Predicted methyltransf 93.2 0.11 2.5E-06 46.1 4.0 61 29-89 2-62 (287)
216 KOG3081 Vesicle coat complex C 92.7 1.2 2.6E-05 40.3 9.9 70 16-85 201-270 (299)
217 PF14561 TPR_20: Tetratricopep 92.7 0.89 1.9E-05 34.0 7.9 74 7-80 7-82 (90)
218 KOG1941 Acetylcholine receptor 92.7 0.89 1.9E-05 43.0 9.4 184 1-190 135-341 (518)
219 PF05843 Suf: Suppressor of fo 92.7 2.1 4.4E-05 38.3 11.6 86 34-125 13-99 (280)
220 PF12968 DUF3856: Domain of Un 92.5 3.1 6.7E-05 33.6 11.0 91 32-124 19-128 (144)
221 COG3898 Uncharacterized membra 92.5 5.8 0.00013 38.0 14.5 78 2-81 134-213 (531)
222 KOG3081 Vesicle coat complex C 92.4 3.7 8.1E-05 37.2 12.6 158 2-183 122-281 (299)
223 KOG4340 Uncharacterized conser 92.1 0.98 2.1E-05 41.9 8.7 117 4-126 60-208 (459)
224 KOG0376 Serine-threonine phosp 91.9 0.12 2.5E-06 49.8 2.7 90 2-91 18-107 (476)
225 PF07721 TPR_4: Tetratricopept 91.9 0.24 5.2E-06 28.3 3.0 26 22-47 1-26 (26)
226 KOG4648 Uncharacterized conser 91.8 0.69 1.5E-05 43.6 7.5 92 29-126 104-195 (536)
227 PF09613 HrpB1_HrpK: Bacterial 91.5 1.5 3.2E-05 36.6 8.5 55 34-88 22-76 (160)
228 COG4105 ComL DNA uptake lipopr 91.3 1.5 3.2E-05 39.3 8.8 104 21-126 33-146 (254)
229 PF13181 TPR_8: Tetratricopept 91.2 0.54 1.2E-05 27.6 4.3 31 57-87 2-32 (34)
230 COG4976 Predicted methyltransf 91.2 0.36 7.9E-06 43.0 4.8 55 2-56 9-63 (287)
231 KOG4642 Chaperone-dependent E3 91.1 0.79 1.7E-05 41.0 6.8 85 36-126 24-108 (284)
232 PF13176 TPR_7: Tetratricopept 91.0 0.51 1.1E-05 28.9 4.0 26 58-83 1-26 (36)
233 KOG4234 TPR repeat-containing 90.9 1.9 4.2E-05 37.8 8.8 91 29-125 102-197 (271)
234 PF13374 TPR_10: Tetratricopep 90.8 0.56 1.2E-05 28.5 4.2 31 57-87 3-33 (42)
235 KOG1915 Cell cycle control pro 90.7 2.5 5.5E-05 41.3 10.3 123 2-125 87-236 (677)
236 KOG3824 Huntingtin interacting 90.7 0.44 9.5E-06 44.2 4.9 63 2-64 130-192 (472)
237 PF13174 TPR_6: Tetratricopept 90.4 0.47 1E-05 27.5 3.4 31 58-88 2-32 (33)
238 smart00028 TPR Tetratricopepti 90.4 0.5 1.1E-05 25.5 3.4 29 58-86 3-31 (34)
239 KOG3785 Uncharacterized conser 90.2 2.6 5.6E-05 40.0 9.6 119 1-125 70-214 (557)
240 KOG1128 Uncharacterized conser 89.9 0.85 1.8E-05 46.2 6.6 110 35-151 498-616 (777)
241 KOG1130 Predicted G-alpha GTPa 89.8 2.6 5.7E-05 40.6 9.4 124 1-128 208-347 (639)
242 PF03704 BTAD: Bacterial trans 89.5 2.4 5.2E-05 33.3 8.0 89 31-125 15-125 (146)
243 KOG3785 Uncharacterized conser 89.4 4.6 0.0001 38.3 10.6 54 60-119 61-114 (557)
244 PF09613 HrpB1_HrpK: Bacterial 89.3 6.4 0.00014 32.9 10.5 98 3-125 25-122 (160)
245 TIGR03504 FimV_Cterm FimV C-te 89.3 1 2.2E-05 29.5 4.6 40 100-147 4-43 (44)
246 COG2909 MalT ATP-dependent tra 89.0 13 0.00029 38.6 14.4 87 2-88 429-529 (894)
247 KOG1915 Cell cycle control pro 88.5 6.8 0.00015 38.5 11.3 118 3-125 419-536 (677)
248 TIGR02561 HrpB1_HrpK type III 88.0 9.2 0.0002 31.7 10.4 83 35-125 23-105 (153)
249 COG2912 Uncharacterized conser 87.6 1.6 3.5E-05 39.3 6.3 66 2-67 195-260 (269)
250 KOG0530 Protein farnesyltransf 87.1 9.7 0.00021 34.7 10.8 216 3-230 58-295 (318)
251 KOG1130 Predicted G-alpha GTPa 87.1 0.51 1.1E-05 45.3 2.9 122 1-125 108-264 (639)
252 PF12862 Apc5: Anaphase-promot 87.1 2.4 5.2E-05 31.5 6.1 52 33-84 9-69 (94)
253 PF04910 Tcf25: Transcriptiona 85.8 19 0.00041 33.6 12.6 96 24-125 105-222 (360)
254 KOG0551 Hsp90 co-chaperone CNS 85.6 3 6.5E-05 39.0 7.0 84 3-86 96-183 (390)
255 KOG4340 Uncharacterized conser 85.6 21 0.00045 33.4 12.3 79 2-82 126-204 (459)
256 KOG2053 Mitochondrial inherita 83.8 4.7 0.0001 41.8 8.0 88 32-125 19-106 (932)
257 TIGR02561 HrpB1_HrpK type III 83.4 6.6 0.00014 32.5 7.4 95 4-123 26-120 (153)
258 KOG4507 Uncharacterized conser 83.3 8.2 0.00018 38.8 9.2 134 9-150 200-335 (886)
259 PF07079 DUF1347: Protein of u 83.0 16 0.00036 35.6 10.9 72 51-126 74-158 (549)
260 PF13281 DUF4071: Domain of un 82.8 14 0.00029 35.0 10.3 101 3-109 156-273 (374)
261 KOG2300 Uncharacterized conser 82.8 26 0.00056 34.6 12.2 141 1-147 336-491 (629)
262 PF12862 Apc5: Anaphase-promot 82.7 14 0.0003 27.3 8.5 60 67-127 9-72 (94)
263 KOG4507 Uncharacterized conser 82.3 4.7 0.0001 40.5 7.2 89 2-90 621-710 (886)
264 KOG1070 rRNA processing protei 82.0 15 0.00032 40.3 11.0 177 6-204 1442-1660(1710)
265 KOG1070 rRNA processing protei 81.8 15 0.00032 40.3 10.9 114 7-126 1549-1664(1710)
266 KOG1310 WD40 repeat protein [G 81.4 4.3 9.3E-05 40.3 6.5 85 4-88 390-477 (758)
267 COG4941 Predicted RNA polymera 81.0 7.2 0.00016 36.6 7.5 62 5-66 346-409 (415)
268 PF07720 TPR_3: Tetratricopept 80.1 5.7 0.00012 24.7 4.7 29 27-55 6-36 (36)
269 KOG0376 Serine-threonine phosp 79.2 3.9 8.5E-05 39.6 5.4 110 30-148 12-121 (476)
270 KOG2047 mRNA splicing factor [ 79.2 31 0.00067 35.2 11.6 136 6-150 123-305 (835)
271 KOG1308 Hsp70-interacting prot 78.3 0.89 1.9E-05 42.5 0.8 56 34-89 126-181 (377)
272 KOG0985 Vesicle coat protein c 78.2 21 0.00046 38.2 10.5 137 29-203 1055-1191(1666)
273 PF08424 NRDE-2: NRDE-2, neces 76.8 59 0.0013 29.6 15.7 145 5-150 48-211 (321)
274 PF04781 DUF627: Protein of un 76.5 6.9 0.00015 30.8 5.2 18 2-19 10-27 (111)
275 KOG3824 Huntingtin interacting 75.7 7 0.00015 36.5 5.7 58 31-88 125-182 (472)
276 PF11846 DUF3366: Domain of un 75.5 10 0.00022 31.6 6.4 51 37-88 126-176 (193)
277 COG2976 Uncharacterized protei 75.4 21 0.00045 31.0 8.3 81 41-124 71-154 (207)
278 KOG3617 WD40 and TPR repeat-co 74.8 47 0.001 35.0 11.7 91 28-121 918-1047(1416)
279 PF10607 CLTH: CTLH/CRA C-term 74.4 19 0.00041 28.3 7.5 98 68-170 13-116 (145)
280 PF11846 DUF3366: Domain of un 72.1 14 0.00031 30.7 6.5 41 75-122 130-170 (193)
281 PF12854 PPR_1: PPR repeat 70.6 10 0.00022 22.8 3.9 26 56-81 7-32 (34)
282 COG3914 Spy Predicted O-linked 70.0 35 0.00076 34.2 9.4 44 33-76 78-121 (620)
283 COG3914 Spy Predicted O-linked 69.8 67 0.0014 32.3 11.3 87 2-88 81-174 (620)
284 KOG3364 Membrane protein invol 68.2 13 0.00029 30.5 5.2 55 6-60 53-109 (149)
285 KOG2396 HAT (Half-A-TPR) repea 68.1 55 0.0012 32.4 10.1 82 8-90 91-174 (568)
286 PF04184 ST7: ST7 protein; In 66.7 28 0.00062 34.2 8.0 64 22-85 259-324 (539)
287 COG3898 Uncharacterized membra 66.1 1.3E+02 0.0029 29.1 19.8 116 1-122 167-289 (531)
288 PF10255 Paf67: RNA polymerase 65.6 51 0.0011 31.5 9.4 101 17-123 68-191 (404)
289 COG3947 Response regulator con 65.3 25 0.00055 32.5 6.9 59 24-82 281-339 (361)
290 KOG0529 Protein geranylgeranyl 64.3 53 0.0012 31.5 9.1 97 5-107 92-194 (421)
291 KOG2610 Uncharacterized conser 64.1 41 0.00089 31.9 8.2 148 35-201 116-270 (491)
292 COG5191 Uncharacterized conser 63.8 22 0.00048 33.3 6.3 89 13-108 98-187 (435)
293 COG2909 MalT ATP-dependent tra 62.7 1.2E+02 0.0027 31.8 12.0 102 20-122 413-523 (894)
294 KOG3364 Membrane protein invol 62.6 34 0.00074 28.2 6.5 67 55-126 31-101 (149)
295 smart00386 HAT HAT (Half-A-TPR 62.4 19 0.00041 20.0 3.9 27 36-62 1-27 (33)
296 PF12854 PPR_1: PPR repeat 62.2 20 0.00044 21.4 4.1 28 20-47 5-32 (34)
297 PF10373 EST1_DNA_bind: Est1 D 61.1 19 0.0004 31.1 5.3 43 41-83 1-43 (278)
298 KOG1941 Acetylcholine receptor 60.1 1.2E+02 0.0027 29.1 10.6 194 5-201 23-229 (518)
299 KOG3807 Predicted membrane pro 58.4 1.1E+02 0.0023 29.2 9.8 127 6-145 202-355 (556)
300 PF04910 Tcf25: Transcriptiona 57.9 1.6E+02 0.0035 27.4 11.4 103 17-124 35-167 (360)
301 PF13041 PPR_2: PPR repeat fam 57.3 12 0.00026 24.0 2.6 23 104-127 12-34 (50)
302 PF14853 Fis1_TPR_C: Fis1 C-te 55.6 13 0.00028 25.1 2.6 31 1-31 14-44 (53)
303 KOG2047 mRNA splicing factor [ 54.9 1.3E+02 0.0028 31.0 10.2 120 2-125 491-615 (835)
304 KOG0529 Protein geranylgeranyl 54.5 76 0.0016 30.5 8.4 129 5-150 46-192 (421)
305 PF10516 SHNi-TPR: SHNi-TPR; 53.7 29 0.00064 21.8 3.8 28 24-51 3-30 (38)
306 KOG2471 TPR repeat-containing 53.2 42 0.0009 33.3 6.5 62 23-84 620-683 (696)
307 KOG2396 HAT (Half-A-TPR) repea 52.3 29 0.00063 34.2 5.3 56 4-59 121-177 (568)
308 PF10579 Rapsyn_N: Rapsyn N-te 51.9 40 0.00087 25.0 4.9 52 32-83 16-70 (80)
309 KOG1914 mRNA cleavage and poly 51.7 68 0.0015 32.1 7.7 74 46-126 10-83 (656)
310 KOG1310 WD40 repeat protein [G 51.2 41 0.00089 33.7 6.1 83 35-123 387-472 (758)
311 COG3629 DnrI DNA-binding trans 49.6 87 0.0019 28.4 7.7 55 31-85 162-216 (280)
312 KOG1585 Protein required for f 48.2 2.2E+02 0.0047 26.0 12.7 120 6-126 11-140 (308)
313 COG5191 Uncharacterized conser 47.7 28 0.0006 32.7 4.2 67 6-72 125-194 (435)
314 PF10602 RPN7: 26S proteasome 46.9 1.7E+02 0.0036 24.3 12.7 102 23-125 37-142 (177)
315 KOG1586 Protein required for f 46.6 1.5E+02 0.0033 26.8 8.5 92 35-127 86-185 (288)
316 PF02259 FAT: FAT domain; Int 46.2 2.1E+02 0.0045 25.2 11.7 62 23-84 147-212 (352)
317 PF14863 Alkyl_sulf_dimr: Alky 45.0 39 0.00084 27.5 4.3 44 31-74 79-122 (141)
318 PRK15490 Vi polysaccharide bio 44.5 2.6E+02 0.0056 28.1 10.7 129 25-164 11-139 (578)
319 PF07219 HemY_N: HemY protein 44.2 73 0.0016 24.2 5.6 45 27-71 64-108 (108)
320 PF11817 Foie-gras_1: Foie gra 42.8 54 0.0012 28.6 5.2 51 74-125 156-207 (247)
321 COG4455 ImpE Protein of avirul 42.7 70 0.0015 28.6 5.7 61 30-90 9-69 (273)
322 PRK15326 type III secretion sy 41.2 96 0.0021 23.0 5.4 45 23-67 8-52 (80)
323 KOG2422 Uncharacterized conser 41.1 3.8E+02 0.0083 27.2 11.1 116 2-124 298-447 (665)
324 PF13041 PPR_2: PPR repeat fam 40.5 61 0.0013 20.5 4.0 34 55-88 2-35 (50)
325 PF11817 Foie-gras_1: Foie gra 39.7 1.2E+02 0.0025 26.5 6.8 78 41-119 157-241 (247)
326 PF11207 DUF2989: Protein of u 39.5 2.6E+02 0.0055 24.3 9.4 59 54-115 139-197 (203)
327 KOG0551 Hsp90 co-chaperone CNS 39.3 1.4E+02 0.003 28.2 7.4 91 29-125 88-182 (390)
328 TIGR02996 rpt_mate_G_obs repea 36.2 74 0.0016 20.7 3.7 33 43-75 3-35 (42)
329 smart00299 CLH Clathrin heavy 36.0 2E+02 0.0043 22.1 8.0 86 33-119 18-105 (140)
330 COG4649 Uncharacterized protei 35.1 3E+02 0.0065 23.9 10.4 88 29-119 65-155 (221)
331 KOG0545 Aryl-hydrocarbon recep 34.9 1.6E+02 0.0034 27.0 6.8 65 24-88 232-296 (329)
332 PF08424 NRDE-2: NRDE-2, neces 34.8 3.5E+02 0.0076 24.5 14.5 126 38-169 47-185 (321)
333 PF13812 PPR_3: Pentatricopept 33.7 67 0.0015 18.0 3.1 23 185-207 8-30 (34)
334 KOG3617 WD40 and TPR repeat-co 33.2 2.3E+02 0.0051 30.2 8.4 81 29-125 807-887 (1416)
335 PF08631 SPO22: Meiosis protei 32.6 3.5E+02 0.0075 23.8 12.7 117 2-124 7-149 (278)
336 PRK15180 Vi polysaccharide bio 32.2 2.3E+02 0.0049 28.4 7.9 117 2-124 303-419 (831)
337 KOG1538 Uncharacterized conser 30.4 1.3E+02 0.0028 31.1 6.1 82 2-107 787-869 (1081)
338 PF10579 Rapsyn_N: Rapsyn N-te 29.3 2.4E+02 0.0051 20.9 6.3 60 64-126 14-73 (80)
339 PF09986 DUF2225: Uncharacteri 29.0 3.7E+02 0.0081 23.1 9.7 90 35-126 90-195 (214)
340 PF10373 EST1_DNA_bind: Est1 D 28.5 2.3E+02 0.0049 24.2 6.8 62 7-68 1-62 (278)
341 PF10602 RPN7: 26S proteasome 27.7 3.5E+02 0.0076 22.4 9.7 94 101-207 42-143 (177)
342 KOG0545 Aryl-hydrocarbon recep 26.8 1.5E+02 0.0033 27.0 5.3 59 2-60 244-302 (329)
343 PF04505 Dispanin: Interferon- 26.3 59 0.0013 23.8 2.3 21 32-52 47-67 (82)
344 TIGR00756 PPR pentatricopeptid 26.3 1.2E+02 0.0027 16.6 3.5 20 106-126 11-30 (35)
345 PF13226 DUF4034: Domain of un 26.1 2.3E+02 0.005 25.7 6.5 66 8-73 63-150 (277)
346 PF15015 NYD-SP12_N: Spermatog 26.0 5.1E+02 0.011 25.5 8.9 141 34-185 188-365 (569)
347 KOG2300 Uncharacterized conser 25.9 6E+02 0.013 25.5 9.5 96 23-121 446-552 (629)
348 PF04212 MIT: MIT (microtubule 25.8 1.6E+02 0.0035 20.2 4.4 18 68-85 17-34 (69)
349 cd02682 MIT_AAA_Arch MIT: doma 24.4 1.4E+02 0.003 21.7 3.9 46 28-73 12-64 (75)
350 PF02184 HAT: HAT (Half-A-TPR) 23.6 93 0.002 19.0 2.4 19 37-55 2-20 (32)
351 PF14689 SPOB_a: Sensor_kinase 23.4 2.5E+02 0.0054 19.2 5.1 46 161-209 9-54 (62)
352 KOG0546 HSP90 co-chaperone CPR 22.9 1.2E+02 0.0027 28.6 4.2 58 14-71 301-358 (372)
353 smart00745 MIT Microtubule Int 22.3 1.8E+02 0.0039 20.3 4.2 17 69-85 21-37 (77)
354 KOG3783 Uncharacterized conser 22.2 7.2E+02 0.016 24.8 9.4 84 23-106 450-541 (546)
355 PF01535 PPR: PPR repeat; Int 22.1 1.4E+02 0.003 16.1 2.9 17 107-124 12-28 (31)
356 COG4941 Predicted RNA polymera 22.0 6.5E+02 0.014 24.0 8.7 117 5-126 273-395 (415)
357 PRK11619 lytic murein transgly 21.8 8.4E+02 0.018 24.7 12.6 91 25-122 282-372 (644)
358 PF14852 Fis1_TPR_N: Fis1 N-te 21.6 1.7E+02 0.0037 18.0 3.4 26 182-207 5-30 (35)
359 PHA02537 M terminase endonucle 21.5 1.1E+02 0.0023 27.1 3.3 20 70-89 192-211 (230)
360 COG5107 RNA14 Pre-mRNA 3'-end 21.3 3.3E+02 0.0071 27.1 6.7 76 45-126 31-106 (660)
361 KOG1585 Protein required for f 21.2 6.4E+02 0.014 23.1 9.1 82 3-84 46-138 (308)
362 cd02677 MIT_SNX15 MIT: domain 21.0 1.2E+02 0.0027 21.7 3.1 34 38-86 3-36 (75)
363 PF09205 DUF1955: Domain of un 20.3 5.1E+02 0.011 21.5 7.7 54 31-84 95-148 (161)
364 KOG0396 Uncharacterized conser 20.0 7.7E+02 0.017 23.5 11.3 142 24-170 118-265 (389)
No 1
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.5e-41 Score=303.28 Aligned_cols=214 Identities=34% Similarity=0.554 Sum_probs=190.1
Q ss_pred CCChhhHHHHHHhhcCCC----CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~----p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
+|+..++++.++|++|.| |.++|++||+||+|+|+|.|++||+.++||+++||+|+||+|+++||++|.||++||.
T Consensus 150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 689999999999999984 4568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccc
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV 156 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~ 156 (235)
+||.+.+..|.. +.++.+|||||.|+||+|.+ .|+.|++|||+.|+++++| .|++|++|||++.|+++
T Consensus 230 eFM~~ted~Wr~-s~mlasHNyWH~Al~~iE~a-eye~aleIyD~ei~k~l~k---------~Da~a~~~~ld~dgv~~- 297 (491)
T KOG2610|consen 230 EFMYKTEDDWRQ-SWMLASHNYWHTALFHIEGA-EYEKALEIYDREIWKRLEK---------DDAVARDVYLDLDGVDL- 297 (491)
T ss_pred HHHHhcccchhh-hhHHHhhhhHHHHHhhhccc-chhHHHHHHHHHHHHHhhc---------cchhhhhhhhhhhhHHh-
Confidence 999999999995 78999999999999999986 9999999999999998644 59999999999999985
Q ss_pred cccchH---HHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 026637 157 FGNRLK---VLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229 (235)
Q Consensus 157 ~g~rw~---~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (235)
-.++|. .|++.+..+..++..+.-|+-..|++....+...+.+|++ ++++-+.++ .|-.++++|.|.+.+
T Consensus 298 ~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~~~~~~~~l~~~ll~-~~~~ls~~n--~q~~~t~gi~l~~~~ 370 (491)
T KOG2610|consen 298 RSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLE-LKSLLSEDN--AQISKTKGIPLYDGM 370 (491)
T ss_pred HHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHH-HHHHhhhhh--hhhhhhhccchHHHh
Confidence 357777 5566666666666666666777999999999999999999 888877643 466799999998875
No 2
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.96 E-value=4.1e-27 Score=212.19 Aligned_cols=224 Identities=34% Similarity=0.506 Sum_probs=187.8
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+...+...++...+..|+++++++++|+++.++|++++|++.++++++++|+++++++.++++++++|++++|+.+++++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 33444444445557889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchH
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 162 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~ 162 (235)
.+.+|.. +.+..|+|||+|.+++..| ++++|+++|++.+.+. ..+....+++|+++++||+.+.|.. .+.+||+
T Consensus 175 l~~~~~~-~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~w~ 248 (355)
T cd05804 175 RDTWDCS-SMLRGHNWWHLALFYLERG-DYEAALAIYDTHIAPS---AESDPALDLLDAASLLWRLELAGHV-DVGDRWE 248 (355)
T ss_pred hhccCCC-cchhHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccc---cCCChHHHHhhHHHHHHHHHhcCCC-ChHHHHH
Confidence 9999874 3457899999999999998 9999999999987653 1123455556899999999999964 4689999
Q ss_pred HHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhhh
Q 026637 163 VLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICLI 232 (235)
Q Consensus 163 ~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (235)
.+++...+..+++...|+++|.++++...|+.+.+.++|+.++..++.++..........+.+..++..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 249 DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 9999887765668899999999999999999999999999999998775323333455666677776654
No 3
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=1.5e-11 Score=119.46 Aligned_cols=118 Identities=8% Similarity=-0.055 Sum_probs=105.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+++...+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+.++++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.+..|..+. .++ +++..++..| ++++|++.+++.+..
T Consensus 398 Al~l~P~~~~---~~~--~~~~~~~~~g-~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 398 CLKLDPTRAA---AGI--TKLWITYYHT-GIDDAIRLGDELRSQ 435 (553)
T ss_pred HHhcCCCChh---hHH--HHHHHHHhcc-CHHHHHHHHHHHHHh
Confidence 9999988541 222 2444555677 899999999997764
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=2.1e-12 Score=104.67 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=99.2
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 8 l~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
.+.+++++..+|++. ..+|+++...|++++|.+.+++++.++|+++.++..+|.++...|++++|+.+++++....|
T Consensus 13 ~~~~~~al~~~p~~~---~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPETV---YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 357889999999873 35789999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 88 ~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..+ ..+.++|.++...| ++++|++.|++.|...
T Consensus 90 ~~~-----~a~~~lg~~l~~~g-~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHP-----EPVYQTGVCLKMMG-EPGLAREAFQTAIKMS 122 (144)
T ss_pred CCc-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 865 34556999999998 9999999999999873
No 5
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=2.1e-11 Score=118.43 Aligned_cols=117 Identities=9% Similarity=0.058 Sum_probs=104.4
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~---------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~ 73 (235)
+.++++..+++++..+|+++.++..+|.++... +++++|++.+++|++++|+++.++..+|.++..+|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356899999999999999999999998866533 34899999999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|+..++++....|+++ ..|+ ++|.+++..| ++++|+..|++.+..
T Consensus 356 ~A~~~~~~Al~l~P~~~---~a~~--~lg~~l~~~G-~~~eAi~~~~~Al~l 401 (553)
T PRK12370 356 VGSLLFKQANLLSPISA---DIKY--YYGWNLFMAG-QLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 99999999999998854 3444 5899999998 999999999999887
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=6.1e-11 Score=116.04 Aligned_cols=209 Identities=12% Similarity=0.091 Sum_probs=130.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++..+|+++.++..+|..+...|++++|+..++++++++|++..++..+|.++..+|++++++..++
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36777777777777777777777777777777778888888888888888888888888888888888888888888888
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCch---HhHhHHHHHHHHHHhcCccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP---EVYLNALGLLLRVYVRGELDVF 157 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~---~~~~da~sLL~Rl~l~G~~~~~ 157 (235)
++....|..+ ..+..++..+...| ++++|++.|++.+... +...... ..+++.+..+++.
T Consensus 458 ~al~~~P~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~--------- 520 (615)
T TIGR00990 458 RCKKNFPEAP-----DVYNYYGELLLDQN-KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW--------- 520 (615)
T ss_pred HHHHhCCCCh-----HHHHHHHHHHHHcc-CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH---------
Confidence 7777776643 23334777777776 7888888888877653 1110000 0112222222220
Q ss_pred ccchHHHHHHHHhhh-cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhh
Q 026637 158 GNRLKVLADCVADQA-NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICL 231 (235)
Q Consensus 158 g~rw~~la~~~~~~~-~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (235)
..+++.-...+..-. -++...-.-.+....+...|+.+.+-++++...+.+... ++ .+++...+++++.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~-~e----~~~a~~~~~a~~~ 590 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-GE----LVQAISYAEATRT 590 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH-HH----HHHHHHHHHHHHH
Confidence 112333222322210 111111223456778888999988888877766655331 22 5566666666654
No 7
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.34 E-value=5.2e-11 Score=101.65 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=107.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-QHDCC--FKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl-~~~Gr--~~egi~~ 78 (235)
++.+++...+++++..+|+++..+.++|..+...|++++|+..+++|++++|+++..+..+|.++ ...|+ .++++..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999996 56688 5999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++++....|+.+ ..+ ..+|..+++.| ++++|+..|++.+...
T Consensus 133 l~~al~~dP~~~---~al--~~LA~~~~~~g-~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 133 IDKALALDANEV---TAL--MLLASDAFMQA-DYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHhCCCCh---hHH--HHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 999999998854 233 45999999998 9999999999998773
No 8
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.29 E-value=6.3e-11 Score=118.17 Aligned_cols=156 Identities=10% Similarity=-0.052 Sum_probs=129.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++++.|++..+...++-+|.+.+++++|...++++|+.+|+++.+++.+|.++...|+++||++.++
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc----hHhHhHHHHHHHHHHhcCcccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH----PEVYLNALGLLLRVYVRGELDV 156 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~----~~~~~da~sLL~Rl~l~G~~~~ 156 (235)
+.....|..+ ..+.+ +|..+.+.| +.++|...|++.|... .+++-- ..++---+.+|=||+.+|..++
T Consensus 179 ~~~~~~p~~~---~~~~~--~a~~l~~~G-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (694)
T PRK15179 179 RLSRQHPEFE---NGYVG--WAQSLTRRG-ALWRARDVLQAGLDAI--GDGARKLTRRLVDLNADLAALRRLGVEGDGRD 250 (694)
T ss_pred HHHhcCCCcH---HHHHH--HHHHHHHcC-CHHHHHHHHHHHHHhh--CcchHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence 9998655432 33444 889999998 9999999999999885 344321 1122233578889998877554
Q ss_pred cccchHHH
Q 026637 157 FGNRLKVL 164 (235)
Q Consensus 157 ~g~rw~~l 164 (235)
+..|.-.+
T Consensus 251 ~~~~~~~~ 258 (694)
T PRK15179 251 VPVSILVL 258 (694)
T ss_pred CceeeeeH
Confidence 44444333
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=4.3e-11 Score=123.31 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=112.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+..+++++..+|+ +.++..+|.++.+.|++++|++..+++++++|+++.++.++|.++...|++++++..++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 49999999999999999997 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++....|..+ ..++++|.++...| ++++|++.|++.+...
T Consensus 668 ~AL~l~P~~~-----~a~~nLA~al~~lG-d~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 668 RAHKGLPDDP-----ALIRQLAYVNQRLD-DMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 9999998853 56778999999998 9999999999998773
No 10
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=6.9e-11 Score=102.99 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=109.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+...+...+++||.++|++..++..+|+.++..|+.+-|.+.+|+||+++|+++..+.+-|.-+..+|++++|..++++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+... |..+.. .--|-++++|.+..| +++.|.+.|.+.+...
T Consensus 129 Al~~-P~Y~~~--s~t~eN~G~Cal~~g-q~~~A~~~l~raL~~d 169 (250)
T COG3063 129 ALAD-PAYGEP--SDTLENLGLCALKAG-QFDQAEEYLKRALELD 169 (250)
T ss_pred HHhC-CCCCCc--chhhhhhHHHHhhcC-CchhHHHHHHHHHHhC
Confidence 9654 222211 235667999999998 8999999999999873
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.25 E-value=5.4e-11 Score=96.40 Aligned_cols=90 Identities=9% Similarity=-0.173 Sum_probs=87.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.+++...+++++..+|.++.++..+|.++...|++++|+..+++|++++|+++.+++.+|.++...|++++|+..++
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++...-|+.+
T Consensus 117 ~Al~~~p~~~ 126 (144)
T PRK15359 117 TAIKMSYADA 126 (144)
T ss_pred HHHHhCCCCh
Confidence 9999988854
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.5e-09 Score=89.12 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=104.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...+++++...|++..++..+|..+...|++++|++.++++++++|+++.+...++.++..+|++++++..++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....-+. +. ....+..++.+++..| ++++|...|++.+..
T Consensus 124 ~~~~~~~~-~~--~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 124 QAIEDPLY-PQ--PARSLENAGLCALKAG-DFDKAEKYLTRALQI 164 (234)
T ss_pred HHHhcccc-cc--chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 98764221 11 1245566899999988 899999999988876
No 13
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=2.2e-10 Score=103.04 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=102.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+..+++...++++..+|+++.++..+|..+...|++++|++.+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|.++ ....|. .+.. ..+ ++++|++.|.+.+..
T Consensus 157 ~al~~~P~~~----~~~~~~-~l~~-~~~-~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 157 AFYQDDPNDP----YRALWL-YLAE-SKL-DPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHhCCCCH----HHHHHH-HHHH-ccC-CHHHHHHHHHHHHhh
Confidence 9999998864 233332 2222 345 899999999876644
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.23 E-value=1.3e-10 Score=112.85 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=112.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|..+.+.+..+|+++..|..+.++.++|-+|.+.|+.+||+..+.+||.++|+.+.++.+||.++-++|.+++|+.+++.
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..-.|.+. ..|++ +|..|-.+| .+++|+..|..+|+.
T Consensus 380 al~v~p~~a---aa~nN--La~i~kqqg-nl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 380 ALEVFPEFA---AAHNN--LASIYKQQG-NLDDAIMCYKEALRI 417 (966)
T ss_pred HHhhChhhh---hhhhh--HHHHHHhcc-cHHHHHHHHHHHHhc
Confidence 999997754 67885 999999998 999999999999987
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.21 E-value=5.4e-10 Score=110.83 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=112.9
Q ss_pred CChhh----HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDL----CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~----al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+.++ ++..+++++..+|+++.++..+|.++.+.|++++|+...+++++++|+++.++..++.++..+|++++|+.
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66664 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc---hHhHhHHHHHH--------H
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH---PEVYLNALGLL--------L 146 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~---~~~~~da~sLL--------~ 146 (235)
.+++.....|..+ .....+|.++...| ++++|++.|++.+...-....... ...+.++.+.. |
T Consensus 340 ~l~~al~~~P~~~-----~~~~~~a~al~~~G-~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 340 EFVQLAREKGVTS-----KWNRYAAAALLQAG-KTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHhCccch-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhH
Confidence 9998888776632 12223577788887 899999999998776311111000 12234555555 8
Q ss_pred HHHhcCcc
Q 026637 147 RVYVRGEL 154 (235)
Q Consensus 147 Rl~l~G~~ 154 (235)
..+|+|-+
T Consensus 414 ~~~~~~~~ 421 (656)
T PRK15174 414 AWEVAGRQ 421 (656)
T ss_pred HHHHhccc
Confidence 88888854
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=1.1e-09 Score=85.73 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=101.6
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 9 ~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
...++++...|++..+...+|..+...|++++|...+++++.++|+++.++..+|-++..+|++++++..++++....|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 89 ~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+ -.+.++|.+++..| ++++|+..|++.+...
T Consensus 84 ~~-----~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 DP-----RPYFHAAECLLALG-EPESALKALDLAIEIC 115 (135)
T ss_pred Ch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 54 23345999999998 9999999999988773
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.13 E-value=1.1e-09 Score=107.37 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=109.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++++..+++++..+|+++..+..+|..+.+.|++++|+..++++++++|+++.++..+|.++...|++++|+..++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|... ..++ .+|..++..| ++++|+..|++.+..
T Consensus 424 kal~l~P~~~---~~~~--~la~~~~~~g-~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 424 KSIDLDPDFI---FSHI--QLGVTQYKEG-SIASSMATFRRCKKN 462 (615)
T ss_pred HHHHcCccCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999987732 2333 5899999998 999999999998875
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=1.2e-09 Score=98.24 Aligned_cols=118 Identities=9% Similarity=0.024 Sum_probs=104.0
Q ss_pred CChhhHHHHHHhhcC---CCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLP---YNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~---~~p-~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+..+.++..+.+++. ..| ..+..+...|.++...|++++|+..+++|++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345678888889995 444 3467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.++++....|+.. ..+..+|.+++..| ++++|++.|++.+..
T Consensus 120 ~~~~Al~l~P~~~-----~a~~~lg~~l~~~g-~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLELDPTYN-----YAYLNRGIALYYGG-RYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHhCCCCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999999988743 34556999999988 999999999999987
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.12 E-value=5.7e-10 Score=98.51 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=104.9
Q ss_pred CChhhHHHHHHhhcC--CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~--~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.+++...++++.. ..++++.++..+|..+...|+.++|++..++||+++|+|+.+.-.+++++...|+.+++.+.+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 677778888888554 346889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHH
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (235)
+......|..|. +|+.+|.+++.+| ++++|+.+|++.+... ++ .+..++.-+..|..
T Consensus 204 ~~~~~~~~~~~~-----~~~~la~~~~~lg-~~~~Al~~~~~~~~~~--p~---d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 204 KRLLKAAPDDPD-----LWDALAAAYLQLG-RYEEALEYLEKALKLN--PD---DPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHH-HTSCC-----HCHHHHHHHHHHT--HHHHHHHHHHHHHHS--TT----HHHHHHHHHHHT-
T ss_pred HHHHHHCcCHHH-----HHHHHHHHhcccc-cccccccccccccccc--cc---cccccccccccccc
Confidence 999888877652 5667999999998 9999999999988752 22 24444544444433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.11 E-value=4.1e-09 Score=104.62 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=101.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD----AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~----Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
.|+.+++...+++++...|+++.++..+|..+.+.|++++ |++.++++++++|+++.++..+|.++..+|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4788889999999999899999999999999999999886 788899999999999999999999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..++++....|..+ ..++ +++..+...| ++++|++.|++.+..
T Consensus 305 ~~l~~al~l~P~~~---~a~~--~La~~l~~~G-~~~eA~~~l~~al~~ 347 (656)
T PRK15174 305 PLLQQSLATHPDLP---YVRA--MYARALRQVG-QYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 99999988887743 2233 4888888887 899999999887765
No 21
>PRK11906 transcriptional regulator; Provisional
Probab=99.09 E-value=1.3e-09 Score=103.15 Aligned_cols=116 Identities=11% Similarity=-0.013 Sum_probs=99.4
Q ss_pred hhhHHHHHHhhc---CCCCCChhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 4 PDLCFDIIHQVL---PYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 4 ~~~al~~~~ral---~~~p~~~~~~g~~Af~L~e~---------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
.++++..+.|++ +.+|++.-+++++||++... ....+|.+.+++|++++|+|++|+..+|+++-+.|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 357888899999 99999999999999987664 245568899999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++.|+.+++++....|+.. ..+++ .|+.+...| +.++|++..++.++.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A---~~~~~--~~~~~~~~G-~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIA---SLYYY--RALVHFHNE-KIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhhcCCccH---HHHHH--HHHHHHHcC-CHHHHHHHHHHHhcc
Confidence 9999999999999997754 34554 666676777 999999999998776
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=6.6e-09 Score=85.31 Aligned_cols=119 Identities=10% Similarity=0.069 Sum_probs=107.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~--P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
+|+.++++...++++...|.++.++..++..+...|++++|++..++++... |..+.....++.++...|++++++..
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999865 56678899999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++.....|..+ -.+..+|..+...| ++++|+..+++.+..
T Consensus 158 ~~~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 158 LTRALQIDPQRP-----ESLLELAELYYLRG-QYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHhCcCCh-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 999999887743 23456899999998 999999999988765
No 23
>PRK11906 transcriptional regulator; Provisional
Probab=99.02 E-value=3.4e-09 Score=100.35 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=104.5
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+..++++.++||++.+|+|+++++.+|+++.-.|+++.|...++||+.||||++.++...|.++.+.|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHH-HHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHH
Q 026637 83 SSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL-~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~ 142 (235)
.+..|.-- .-.---+-+ .|... ..|+++++|-+.... .+-++++|-.
T Consensus 399 lrLsP~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~ 446 (458)
T PRK11906 399 LQLEPRRR----KAVVIKECVDMYVPN--PLKNNIKLYYKETES-------ESHRVIIDNI 446 (458)
T ss_pred hccCchhh----HHHHHHHHHHHHcCC--chhhhHHHHhhcccc-------ccchhhHHHH
Confidence 99987732 111112334 55575 489999999664433 2345566654
No 24
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.02 E-value=3.2e-09 Score=103.30 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=102.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|..+++-...+++++..|+.+-+++++|-++.++|.+++|...+..||.+.|+.+.|+.++|.++-++|+..+|+.-+++
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 55666666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRL 161 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw 161 (235)
++...|. |-..|++ +|..|-+.| ...+|+.-|++++-. +.+ ++... +-||--|+..--+.|...|.
T Consensus 448 AI~~nPt---~AeAhsN--Lasi~kDsG-ni~~AI~sY~~aLkl---kPD--fpdA~---cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 448 AIQINPT---FAEAHSN--LASIYKDSG-NIPEAIQSYRTALKL---KPD--FPDAY---CNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHhcCcH---HHHHHhh--HHHHhhccC-CcHHHHHHHHHHHcc---CCC--Cchhh---hHHHHHHHHHhcccchHHHH
Confidence 7766643 4456664 777777776 788888888777655 222 22222 33555566533332345666
Q ss_pred HHHHHHHHhhh
Q 026637 162 KVLADCVADQA 172 (235)
Q Consensus 162 ~~la~~~~~~~ 172 (235)
+.|........
T Consensus 514 ~kl~sivrdql 524 (966)
T KOG4626|consen 514 KKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHH
Confidence 77766666544
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.02 E-value=4e-10 Score=99.48 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=89.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+..+++++..+|+++.+...+++.+.++|+++++.++.++.....|+|+..+..+|.++...|+.++|+.+++
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
+.....|.+| -+..|+|-++...| ++++|++++.+...
T Consensus 239 ~~~~~~p~d~-----~~~~~~a~~l~~~g-~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDP-----LWLLAYADALEQAG-RKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-H-----HHHHHHHHHHT------------------
T ss_pred cccccccccc-----cccccccccccccc-cccccccccccccc
Confidence 9999999865 23457999999998 99999999977654
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=7.2e-09 Score=101.13 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=101.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...+++++...|+++.++..+|..+...|++++|++.++++++.+|+++.+..+++.++...|+ .+++..++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 47888899999999998899999999999999999999999999999999999999999999999999999 77999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
+.....|..+. .+-.+|.++...| ++++|+++|++.+....
T Consensus 828 ~~~~~~~~~~~-----~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLAPNIPA-----ILDTLGWLLVEKG-EADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhCCCCcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence 88888777542 3335788888887 89999999988886443
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=1.3e-07 Score=86.07 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=67.4
Q ss_pred CChhhHHHHHHhhcCCCCCC----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+.+++....++++...+.. ..++..+|..+...|++++|++.++++++.+|.+..++..++.++..+|++++++.
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAID 162 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHH
Confidence 55566666666655532211 24455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+++.....|..+.....+.+..+|..+++.| ++++|++.|++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~ 209 (389)
T PRK11788 163 VAERLEKLGGDSLRVEIAHFYCELAQQALARG-DLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhH
Confidence 66665554443221111223334555555555 566666666655543
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.7e-09 Score=105.23 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=118.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++++.++..++||+-.+|.+.|++..+|.-+..+.+||.|...+|.||.++|++-.|+.-+|.|+..+++++.|.-++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
+...+|+ ++.+.+| .+.++..+| +.|+|+.+|++++.-. ..+ +.-...-+++|+-+
T Consensus 515 A~~INP~-nsvi~~~----~g~~~~~~k-~~d~AL~~~~~A~~ld--~kn---~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 515 AVEINPS-NSVILCH----IGRIQHQLK-RKDKALQLYEKAIHLD--PKN---PLCKYHRASILFSL 570 (638)
T ss_pred hhcCCcc-chhHHhh----hhHHHHHhh-hhhHHHHHHHHHHhcC--CCC---chhHHHHHHHHHhh
Confidence 9999999 6665555 456677787 8999999999999874 332 22245666666543
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=1.1e-07 Score=86.68 Aligned_cols=118 Identities=10% Similarity=-0.006 Sum_probs=74.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-----A~halahvl~~~Gr~~egi 76 (235)
|+.++++..+++++...|.+..++..++.++...|++++|++.+++++..+|++.. .+..++.++..+|++++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666667766666666666666666666777777777777777666666532 3345666666667777777
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+++..+..|.. ...+..++..+...| ++++|+++|++.+..
T Consensus 201 ~~~~~al~~~p~~-----~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 201 ALLKKALAADPQC-----VRASILLGDLALAQG-DYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHhHCcCC-----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 7777666665442 123334666666665 677777777665543
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.96 E-value=2.3e-08 Score=97.64 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=103.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++...|++ .....++.++...|++++|++..++++..+|+++.+...++.++...|++++|+..++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 488999999999999998887 5566788899999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.....|+++ ..+-.++..+...| + ++|+..|++.+..
T Consensus 795 ~~~~~~p~~~-----~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 795 TVVKKAPDNA-----VVLNNLAWLYLELK-D-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHhcC-c-HHHHHHHHHHHhh
Confidence 9999988754 22234888888887 7 8899999998876
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.95 E-value=6.2e-08 Score=101.62 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=105.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW--------------SQHALCHVL 66 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw--------------A~halahvl 66 (235)
.|+.++++..+++++..+|+++.++..+|.++...|++++|++.++++++++|++.. .....+.++
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999998753 334567888
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+|++++|+..++++....|..+ ..++ .+|.+++..| ++++|++.|++.+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~---~a~~--~Lg~~~~~~g-~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDS---YAVL--GLGDVAMARK-DYAAAERYYQQALRM 414 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 999999999999999999988753 2333 5899999998 999999999999976
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.94 E-value=2.1e-08 Score=103.62 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=106.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++...|++...+..++..+...|++++|+...++|++++|+ +.++.++|.++...|++++|+.+++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 388899999999999999999888888888888889999999999999999996 9999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|+.+ ..|+ ++|.++.+.| ++++|++.|++.+..
T Consensus 634 ~AL~l~Pd~~---~a~~--nLG~aL~~~G-~~eeAi~~l~~AL~l 672 (987)
T PRK09782 634 AALELEPNNS---NYQA--ALGYALWDSG-DIAQSREMLERAHKG 672 (987)
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999998854 3454 4898999998 999999999999987
No 33
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=1.5e-08 Score=93.81 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=94.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+++|+.++|+++.+++.+|.++...|++++|+..++
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYL 106 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~l 106 (235)
++....|..+ ..+.|...+...+
T Consensus 95 ~al~l~P~~~---~~~~~l~~~~~kl 117 (356)
T PLN03088 95 KGASLAPGDS---RFTKLIKECDEKI 117 (356)
T ss_pred HHHHhCCCCH---HHHHHHHHHHHHH
Confidence 9999998865 4567755554454
No 34
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.91 E-value=1.6e-08 Score=89.42 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=105.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|++.++...+.|+....|.||.+++-+|.+|.+.|++++|+..+++|+++.|+++-...+++..+.-+|+.+.|...+.+
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.-.=+.++. ..|| +|+..-..| ++++|.+|.++.+.+
T Consensus 194 a~l~~~ad~~--v~~N---LAl~~~~~g-~~~~A~~i~~~e~~~ 231 (257)
T COG5010 194 AYLSPAADSR--VRQN---LALVVGLQG-DFREAEDIAVQELLS 231 (257)
T ss_pred HHhCCCCchH--HHHH---HHHHHhhcC-ChHHHHhhccccccc
Confidence 8766554332 2455 999998888 999999888765554
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=2.6e-08 Score=99.58 Aligned_cols=113 Identities=7% Similarity=-0.095 Sum_probs=99.7
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
++...+-....+|.++.++-++|-++.+.|++++|+...+++++++|++..|.++++.++..+++++||+..+++..+.-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333434445788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 87 ~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+.+ ..|+ ++|.++.+.| +|++|+++|++.+.+
T Consensus 151 p~~~---~~~~--~~a~~l~~~g-~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 151 SSSA---REIL--LEAKSWDEIG-QSEQADACFERLSRQ 183 (694)
T ss_pred CCCH---HHHH--HHHHHHHHhc-chHHHHHHHHHHHhc
Confidence 8843 3345 5999999998 999999999999985
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.89 E-value=1.4e-07 Score=98.96 Aligned_cols=188 Identities=17% Similarity=0.098 Sum_probs=131.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++..+|++++++..+|..+...|++++|++..+++++++|+++.++.+++..+...|+.++++..++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999998888888888888888776
Q ss_pred Hchh----------------------------------------hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 81 ECSS----------------------------------------TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 81 ~a~~----------------------------------------~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
+... ..|..+ ..++ -+|..+++.| ++++|++.|+
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~---~~~~--~La~~~~~~g-~~~~A~~~y~ 627 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST---RIDL--TLADWAQQRG-DYAAARAAYQ 627 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc---hHHH--HHHHHHHHcC-CHHHHHHHHH
Confidence 5421 112211 2233 3888888988 8999999999
Q ss_pred hhchhhhcCCCCCchHhHhHHHHHHHHHHhc-CcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHH
Q 026637 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAED 199 (235)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~-G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ 199 (235)
+.+... +.. .++---|-++... |.. .+=-+.+. ......++.. ..-.....++...|+.+.+.+
T Consensus 628 ~al~~~--P~~-------~~a~~~la~~~~~~g~~---~eA~~~l~-~ll~~~p~~~--~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 628 RVLTRE--PGN-------ADARLGLIEVDIAQGDL---AAARAQLA-KLPATANDSL--NTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHhC--CCC-------HHHHHHHHHHHHHCCCH---HHHHHHHH-HHhccCCCCh--HHHHHHHHHHHhCCCHHHHHH
Confidence 988762 221 2222222222222 321 11111122 2211111221 223344667778999999999
Q ss_pred HHHHHHHHhh
Q 026637 200 LLKGLKSRHS 209 (235)
Q Consensus 200 ll~~~~~~~~ 209 (235)
+++.+.....
T Consensus 693 ~~~~al~~~~ 702 (1157)
T PRK11447 693 TFNRLIPQAK 702 (1157)
T ss_pred HHHHHhhhCc
Confidence 8888776543
No 37
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=1.4e-08 Score=79.39 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=86.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...++++++.+|+++.++..+|..+...|++++|+..+++++.++|+++..+..+|+++...|++++|+.+++
T Consensus 30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
+..+..|..+
T Consensus 110 ~al~~~p~~~ 119 (135)
T TIGR02552 110 LAIEICGENP 119 (135)
T ss_pred HHHHhccccc
Confidence 9999998854
No 38
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=2.2e-07 Score=83.68 Aligned_cols=210 Identities=11% Similarity=0.038 Sum_probs=127.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW----SQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw----A~halahvl~~~Gr~~egi 76 (235)
.|+.+++...+++++...|+++.++.++|-++.+.|++++|++..++++.+.|.++. .+..++.++..+|++++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 489999999999999999999999999999999999999999999999999986543 2346899999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHH-HHHHHHHHhCCCCHHHHHHH--HHhhchhhhcCCCCCchHhHhHHHHHHHHHHh-cC
Q 026637 77 QFMEECSSTWSSCSSFMYTHNW-WHVALCYLEGHSPMRKVLEI--YDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RG 152 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~-WHlAL~~le~G~~~deAl~~--yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l-~G 152 (235)
..+++.....+..+......+. +++....++ | ..+.+.++ ......+.. ++ ......+.. .-|..+ .|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~w~~~~~~~~~~~--~~--~~~~~~~~~--~a~~~~~~~ 278 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELA-G-HVDVGDRWEDLADYAAWHF--PD--HGLAFNDLH--AALALAGAG 278 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhc-C-CCChHHHHHHHHHHHHhhc--Cc--ccchHHHHH--HHHHHhcCC
Confidence 9999986544432212111122 555555544 3 33333333 111111110 11 111122321 122222 22
Q ss_pred cccccccchHHHHHHHHh---hhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHH
Q 026637 153 ELDVFGNRLKVLADCVAD---QANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQEL 218 (235)
Q Consensus 153 ~~~~~g~rw~~la~~~~~---~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~ 218 (235)
........++.+...... ........-..+-.+++..+.|+.+.+-++|...-..+..+||+..|+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~ 347 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQR 347 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 110011122222222211 111122233445556666688988888888877777777778876665
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=3.2e-08 Score=82.00 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHH
Q 026637 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (235)
Q Consensus 19 p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~ 98 (235)
++.=....-+|+-+.+.|++++|++.++....++|.++..+.+||-|+..+|++++||..+..+....|++| ...
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-----~~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-----QAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----hHH
Confidence 333345667788899999999999999999999999999999999999999999999999999999999877 344
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.|+|.+++..| +.++|.+.|+.+|.--
T Consensus 107 ~~ag~c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHh
Confidence 57999999998 9999999999999874
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.85 E-value=1.6e-07 Score=94.72 Aligned_cols=115 Identities=14% Similarity=0.044 Sum_probs=71.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++|....++++..+|+++.++..++.++.+.|++++|....+++++.+|+++. +..++.++..+|++++|+..+++
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666 66666666666666666666666
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
+....|+.+ ..++ .++.++...| +.++|++.+++..
T Consensus 142 al~~~P~~~---~~~~--~la~~l~~~~-~~e~Al~~l~~~~ 177 (765)
T PRK10049 142 ALPRAPQTQ---QYPT--EYVQALRNNR-LSAPALGAIDDAN 177 (765)
T ss_pred HHHhCCCCH---HHHH--HHHHHHHHCC-ChHHHHHHHHhCC
Confidence 666665532 1222 2555555544 5666666665433
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.84 E-value=2.5e-08 Score=85.08 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=84.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHH-HHhCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSL-LELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L-~e~g~--~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+|+.+.+....++++...|+++.++..+|.++ ...|+ +++|++..+++++++|+++.++..+|.++.++|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999999999999999986 67777 5999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCC
Q 026637 78 FMEECSSTWSSCS 90 (235)
Q Consensus 78 ~l~~a~~~w~~~~ 90 (235)
.+++.....|...
T Consensus 166 ~~~~aL~l~~~~~ 178 (198)
T PRK10370 166 LWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhhCCCCc
Confidence 9999988887643
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=8.7e-08 Score=82.01 Aligned_cols=124 Identities=11% Similarity=0.031 Sum_probs=99.2
Q ss_pred CCChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc-----
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHD----- 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~~----- 69 (235)
.|+++++...+++++..+|+++ .++..+|.++...|++++|+..++++++..|+++. ++..+|.++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 3788899999999999888776 46788899999999999999999999999998886 688888888876
Q ss_pred ---CCHHHHHHHHHHchhhhccCCcchhH------------HHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 70 ---CCFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 70 ---Gr~~egi~~l~~a~~~w~~~~~~l~~------------H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|++++++..+++....+|..+..... .-.+-+|.+++..| ++++|+..|.+.+..
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG-AYVAAINRFETVVEN 195 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Confidence 88999999999998888874321000 00134788888887 899999999888754
No 43
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1e-07 Score=87.35 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=110.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF--KEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~--~egi~~ 78 (235)
++.++++....+++..+|++..++...+.+|...| .+.++.....+++..||++..+++..+.++...|+. ++.+++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 67899999999999999999999999999999999 789999999999999999999999999999999985 788999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++....|. + .|.|.|.+..+...| +++++++.|++.|..
T Consensus 131 ~~kal~~dpk-N----y~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 131 TRKILSLDAK-N----YHAWSHRQWVLRTLG-GWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHhCcc-c----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 9999999988 4 689999999998888 899999999999987
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.80 E-value=1.6e-07 Score=94.63 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=109.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...+++.|..|....++..+|..+...|++++|++..+++++++|+++.+...++.++..+|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+.....|..+ . +-.+|..+...| ++++|+..|++.+...
T Consensus 108 ~~l~~~P~~~-----~-~~~la~~l~~~g-~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 108 QLVSGAPDKA-----N-LLALAYVYKRAG-RHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHhCCCCH-----H-HHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999988753 2 334888888888 9999999999999873
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=2.4e-07 Score=79.23 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=91.1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc
Q 026637 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF 92 (235)
Q Consensus 16 ~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~ 92 (235)
|..+..+..+...|..+...|++++|....++++.++|++++ ++..+|.++..+|++++|+..+++..+..|+.+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 566777888899999999999999999999999999999985 66889999999999999999999999999986533
Q ss_pred hhHHHHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026637 93 MYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 93 l~~H~~WHlAL~~le~--------G~~~deAl~~yd~~i~~ 125 (235)
-. .++-++.+++.. | ++++|++.|++.+..
T Consensus 107 ~~--a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 107 DY--AYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRR 144 (235)
T ss_pred HH--HHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHH
Confidence 12 234488888765 7 899999999987653
No 46
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=1e-07 Score=65.93 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
++..+|..+.+.|++++|+...++++.++|+++.++..++.++..+|++++|+..+++.....|..+ -.++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-----KAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-----hHHHHHHH
Confidence 3556788888999999999999999999999999999999999999999999999999988877743 34567899
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++..| ++++|...+.+.+..
T Consensus 77 ~~~~~~-~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLG-KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHH-hHHHHHHHHHHHHcc
Confidence 999998 899999999887654
No 47
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.3e-07 Score=82.11 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=115.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+..+....+.+-.+|.+.+++..++-.+..+|+|.+|+..+++|..++|+|+-++..+|-++...||+++|...+.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 37888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
++...-++.|.. -+ +++..++-.| |++.|.+++....... +.+ . .+.-...|+|.+
T Consensus 159 qAl~L~~~~p~~---~n--Nlgms~~L~g-d~~~A~~lll~a~l~~--~ad---~-~v~~NLAl~~~~ 214 (257)
T COG5010 159 QALELAPNEPSI---AN--NLGMSLLLRG-DLEDAETLLLPAYLSP--AAD---S-RVRQNLALVVGL 214 (257)
T ss_pred HHHHhccCCchh---hh--hHHHHHHHcC-CHHHHHHHHHHHHhCC--CCc---h-HHHHHHHHHHhh
Confidence 999999997743 23 3888888887 9999999998877663 222 2 234556666554
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.77 E-value=3.3e-08 Score=69.16 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=63.9
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhhc
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWS 87 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G-r~~egi~~l~~a~~~w~ 87 (235)
+++..+..+|..+...|+|++|+..+.+|++++|+++.++..+|.++..+| ++++++..++++....|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357788999999999999999999999999999999999999999999999 79999999999988765
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=1.6e-07 Score=77.06 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=91.3
Q ss_pred hhhHHHHHHhhcCCCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQE--DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~--~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~---dawA~halahvl~~~Gr~~egi~~ 78 (235)
...+.+.+.+.+...+.+ .+.+..+|..+..+|++++|+..+++|+.+.|+ .+.++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445666666666666654 577899999999999999999999999999887 457999999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHH-------hCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYL-------EGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~l-------e~G~~~deAl~~yd~~i~~ 125 (235)
++++....|..+ ..|+ +++..+. ..| ++++|+..|++.+..
T Consensus 95 ~~~Al~~~~~~~---~~~~--~la~i~~~~~~~~~~~g-~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 95 YFQALERNPFLP---QALN--NMAVICHYRGEQAIEQG-DSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHhCcCcH---HHHH--HHHHHHHHhhHHHHHcc-cHHHHHHHHHHHHHH
Confidence 999999876643 3343 2555554 887 888777777665443
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6.3e-08 Score=92.16 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=108.0
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+..++...+..|..++|.+|.++.-.|-.+.-.++|++|.+-+++|++|+|.++.++-.+|-+++.++++++....++++
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999888888888888899999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
....|+|| .+-+. .|-.+.+++ ++|.|++.||.+|..+
T Consensus 455 kkkFP~~~---Evy~~--fAeiLtDqq-qFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 455 KKKFPNCP---EVYNL--FAEILTDQQ-QFDKAVKQYDKAIELE 492 (606)
T ss_pred HHhCCCCc---hHHHH--HHHHHhhHH-hHHHHHHHHHHHHhhc
Confidence 99999998 33444 788888987 9999999999999874
No 51
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.76 E-value=2.3e-08 Score=69.38 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
.+|..+.+.|++++|++.++++++.+|+++.++..+|.++..+|++++|+..+++.....|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467789999999999999999999999999999999999999999999999999999988773
No 52
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.69 E-value=1.5e-07 Score=65.06 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=81.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++...|.++.++..+|..+...|++++|++...+++.++|.+..++..++.++...|+++++...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hchhhhc
Q 026637 81 ECSSTWS 87 (235)
Q Consensus 81 ~a~~~w~ 87 (235)
+..+..|
T Consensus 93 ~~~~~~~ 99 (100)
T cd00189 93 KALELDP 99 (100)
T ss_pred HHHccCC
Confidence 8876654
No 53
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=8.1e-08 Score=86.52 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=85.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+++.+|++...+|+.++|.++-++.+.|-++.+.|.|+.|.+-++.||.++|+..-++-.||.++.-+|++++|++.+.+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcc
Q 026637 82 CSSTWSS 88 (235)
Q Consensus 82 a~~~w~~ 88 (235)
+....|+
T Consensus 175 aLeldP~ 181 (304)
T KOG0553|consen 175 ALELDPD 181 (304)
T ss_pred hhccCCC
Confidence 9999988
No 54
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=5.4e-07 Score=85.58 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=124.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|..+.++......+...|+++|+.-+.+-.+.+.|+..+|.+.+++++++.|+.++..-++|.++...|++.||+..+.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh-cCccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RGELDVFGN 159 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~ 159 (235)
+.....|.+|.+ +. =+|-.|-++| +..++...+.....-. + .+-.|..+|-|..= .+.+. .
T Consensus 399 ~~~~~~p~dp~~---w~--~LAqay~~~g-~~~~a~~A~AE~~~~~----G-----~~~~A~~~l~~A~~~~~~~~---~ 460 (484)
T COG4783 399 RYLFNDPEDPNG---WD--LLAQAYAELG-NRAEALLARAEGYALA----G-----RLEQAIIFLMRASQQVKLGF---P 460 (484)
T ss_pred HHhhcCCCCchH---HH--HHHHHHHHhC-chHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHhccCCc---H
Confidence 999999998732 22 3899998998 8899999887766652 1 14577788877764 33432 3
Q ss_pred chHHHHHHH
Q 026637 160 RLKVLADCV 168 (235)
Q Consensus 160 rw~~la~~~ 168 (235)
.|..+-+..
T Consensus 461 ~~aR~dari 469 (484)
T COG4783 461 DWARADARI 469 (484)
T ss_pred HHHHHHHHH
Confidence 455554443
No 55
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=1.3e-06 Score=70.33 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=94.7
Q ss_pred CChhhHHHHHHhhcCCCCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~eg 75 (235)
|+...+...+++.+..+|+.+| +.-.+|-.+.+.|++++|.+..+++++-.|++ +.+...++.++..+|++++|
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5667777778888888898854 55668889999999999999999999988877 45888899999999999999
Q ss_pred HHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
+..++... . +.+ ..-.+.-.|..++..| ++++|+..|+++|
T Consensus 105 l~~L~~~~-~----~~~-~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQIP-D----EAF-KALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhcc-C----cch-HHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 99997632 1 222 3345667999999998 9999999998765
No 56
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.65 E-value=3e-07 Score=89.23 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=91.6
Q ss_pred hhHHHHHHhhcC--CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 5 DLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 5 ~~al~~~~ral~--~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+.+.+.+++++. .+|.++.++..+|+.....|++++|++.++||+++|| ++.++..+|.+++++|++++|++.++++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666777544 5788889999999999999999999999999999999 5899999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+..|.+| +.+||+-..||- +.+...-...+.+.+
T Consensus 480 ~~L~P~~p----t~~~~~~~~f~~----~~~~~~~~~~~~~~~ 514 (517)
T PRK10153 480 FNLRPGEN----TLYWIENLVFQT----SVETVVPYLYRFLAP 514 (517)
T ss_pred HhcCCCCc----hHHHHHhccccc----cHHHHHHHHHhccCc
Confidence 99999987 457777777773 344444434444443
No 57
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.65 E-value=2e-07 Score=90.54 Aligned_cols=115 Identities=10% Similarity=-0.021 Sum_probs=99.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC--------CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--------QMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g--------~~~~Ae~~arrAL~L--~P~dawA~halahvl~~~Gr~~ 73 (235)
..++++.++||+..+|++++++..+++++.... ++.++.+.+++++++ .|.++.++.+++.+...+|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 568999999999999999999999999776642 355677888888775 8889999999999999999999
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.+.++++....|+ . ..|+. +|.++...| ++++|++.|.+++..
T Consensus 438 ~A~~~l~rAl~L~ps---~-~a~~~--lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 438 EAYQAINKAIDLEMS---W-LNYVL--LGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHcCCC---H-HHHHH--HHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 999999999999864 2 36765 899998888 999999999999877
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.63 E-value=4.1e-07 Score=85.16 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=99.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhH--HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFI--FGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~--~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da--wA~halahvl~~~Gr~~egi 76 (235)
.|+.++++..+++++...|++... ..+........++.+.+++..+++++.+|+|+ ..+.++|.+++.+|++++|.
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 489999999999999998887743 24455555667889999999999999999999 99999999999999999999
Q ss_pred HHHHH--chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEE--CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~--a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++++ .....|+ + ....|+|..+...| +.++|.++|++.+.+
T Consensus 356 ~~le~a~a~~~~p~-~-----~~~~~La~ll~~~g-~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 356 DAFKNVAACKEQLD-A-----NDLAMAADAFDQAG-DKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhHHhhcCCC-H-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 99994 5556555 2 24559999999998 899999999987766
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=3.6e-07 Score=68.90 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
.+...|..+.+.|++++|++.+++++..+|++ +.+...+|-++...|++++|+..+++.....|..+.. .-.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA--PDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc--cHHHHH
Confidence 45566777888888888888888888888877 5677888888888888888888888888877764322 223445
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.++...| ++++|+..|++.+..
T Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELG-DKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHHH
Confidence 788888887 888888888887764
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.63 E-value=2.9e-07 Score=85.16 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=82.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 28 ~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
.|-.+...|+|++|+..+++||+++|+++.++..+|.++...|++++|+..++++....|..+ ..++ .+|.+++.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a~~--~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KAYL--RKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HHHH--HHHHHHHH
Confidence 355566889999999999999999999999999999999999999999999999999987743 2333 58999999
Q ss_pred CCCCHHHHHHHHHhhchhh
Q 026637 108 GHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 108 ~G~~~deAl~~yd~~i~~~ 126 (235)
.| +|++|+..|++.+...
T Consensus 83 lg-~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LE-EYQTAKAALEKGASLA 100 (356)
T ss_pred hC-CHHHHHHHHHHHHHhC
Confidence 98 9999999999999773
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=1.1e-06 Score=66.25 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=82.4
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~e 74 (235)
.|+.+++...+++++..+|++ +.++..+|.++.+.|++++|....++++..+|++ ++++..++.++...|+.++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence 488999999999999988876 4688899999999999999999999999999986 7899999999999999999
Q ss_pred HHHHHHHchhhhccC
Q 026637 75 AVQFMEECSSTWSSC 89 (235)
Q Consensus 75 gi~~l~~a~~~w~~~ 89 (235)
++..+++.....|+.
T Consensus 95 A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 95 AKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHCcCC
Confidence 999999999998874
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=5.4e-07 Score=78.84 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
+.--+|.++.+.|++..|.+..++||+.+|++.-+++.+||+++..|..+-+-+-++++....|+... .+|+ .+-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---VLNN--YG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---VLNN--YGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---hhhh--hhH
Confidence 55668889999999999999999999999999999999999999999999999999999999988542 4664 777
Q ss_pred HHHhCCCCHHHHHHHHHhhchhh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|+-..| ++++|...|++++..+
T Consensus 112 FLC~qg-~~~eA~q~F~~Al~~P 133 (250)
T COG3063 112 FLCAQG-RPEEAMQQFERALADP 133 (250)
T ss_pred HHHhCC-ChHHHHHHHHHHHhCC
Confidence 888888 9999999999999874
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.61 E-value=2.3e-07 Score=67.76 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=65.6
Q ss_pred HhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 34 ELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
++|+|++|+..+++.++.+|+ +.-....+|.++..+|++++|+.++++ ....+.. . -..+-+|.+++++| +
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---~--~~~~l~a~~~~~l~-~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---P--DIHYLLARCLLKLG-K 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---H--HHHHHHHHHHHHTT--
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---H--HHHHHHHHHHHHhC-C
Confidence 478999999999999999996 466677789999999999999999998 5554431 1 23445899999998 9
Q ss_pred HHHHHHHHHh
Q 026637 112 MRKVLEIYDN 121 (235)
Q Consensus 112 ~deAl~~yd~ 121 (235)
+++|++.|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999976
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=3.1e-06 Score=69.91 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=81.5
Q ss_pred hHHHHHHhhcCCCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 6 LCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 6 ~al~~~~ral~~~p--~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~ 80 (235)
-|-+.+.+.++..+ .....+..+|..+...|++++|...++++++++|+. +.+++.+|.++...|++++|+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 17 VMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566777777554 566788899999999999999999999999998874 5799999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
++....|..+ ..+. .++.++...| +
T Consensus 97 ~al~~~p~~~---~~~~--~lg~~~~~~g-~ 121 (172)
T PRK02603 97 QALELNPKQP---SALN--NIAVIYHKRG-E 121 (172)
T ss_pred HHHHhCcccH---HHHH--HHHHHHHHcC-C
Confidence 9999877642 2333 4777877765 5
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.54 E-value=1.2e-05 Score=75.24 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=137.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-A~halahvl~~~Gr~~egi~~l~ 80 (235)
||++.++..+.++....|+....+-..|-+..+.|++++|.+...++.+..|++.- +.-+.+.++..+|+++++...++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999999999999988876666667788999999999999999999999999974 55567999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
+..+..|+.+. .... ++..++..| ++++|++++.+..... .....+..+.....|.=.+.... ....
T Consensus 178 ~l~~~~P~~~~---~l~l--l~~~~~~~~-d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~--~~~~ 244 (409)
T TIGR00540 178 KLLEMAPRHKE---VLKL--AEEAYIRSG-AWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAM--ADEG 244 (409)
T ss_pred HHHHhCCCCHH---HHHH--HHHHHHHHh-hHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 99999988652 2333 888999998 9999999997766542 11233333433344432232111 1234
Q ss_pred hHHHHHHHHhhhcc-hhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 161 LKVLADCVADQANW-YLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 161 w~~la~~~~~~~~~-~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
.+.+...|...+.. ...+=..+.++-.+...|+.+.+.++++..-+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 56666666654321 01111244456678888998888877766554
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.53 E-value=2.3e-07 Score=64.27 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da 56 (235)
.|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+||
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 48899999999999999999999999999999999999999999999999999986
No 67
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.52 E-value=4.2e-07 Score=86.20 Aligned_cols=69 Identities=14% Similarity=0.008 Sum_probs=66.0
Q ss_pred CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 17 ~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
.+|+++..+.++|.+|.+.|+|++|++.+++||+++|+++ +++.++|-+|..+|++++|++.+++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999 45999999999999999999999999886
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.51 E-value=1e-06 Score=72.36 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=69.5
Q ss_pred CCChhhHHHHHHhhcCCCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-------HDC 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~---~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~-------~~G 70 (235)
+|++++++....+++...|+ .++++..+|.++...|++++|++.+++|+.++|..+.++..++.++. ..|
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 48999999999999887654 45789999999999999999999999999999999999999999999 555
Q ss_pred CHHHHHHHHHHc
Q 026637 71 CFKEAVQFMEEC 82 (235)
Q Consensus 71 r~~egi~~l~~a 82 (235)
++++++..++++
T Consensus 128 ~~~~A~~~~~~a 139 (168)
T CHL00033 128 DSEIAEAWFDQA 139 (168)
T ss_pred cHHHHHHHHHHH
Confidence 555444444433
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=8.8e-07 Score=73.44 Aligned_cols=86 Identities=8% Similarity=-0.105 Sum_probs=81.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|....+-+.-.+|.+...+..+|.++...|+|.+|+..+.+|+.|+|+||.++...|-++...|+.++|..-++
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhh
Q 026637 81 ECSSTW 86 (235)
Q Consensus 81 ~a~~~w 86 (235)
.++..-
T Consensus 128 ~Ai~~~ 133 (157)
T PRK15363 128 AVVRIC 133 (157)
T ss_pred HHHHHh
Confidence 887654
No 70
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.5e-06 Score=82.52 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=112.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++++.+...++|||.++|.+.-++...|--++|+.....|....|+|+++||.|--|+..+|.+++..+=+.=++=++++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+...-|+++ .+|=-++-+|...+ +.++|++.|.++|...
T Consensus 424 A~~~kPnDs-----Rlw~aLG~CY~kl~-~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 424 ALELKPNDS-----RLWVALGECYEKLN-RLEEAIKCYKRAILLG 462 (559)
T ss_pred HHhcCCCch-----HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcc
Confidence 999999876 45666999999997 9999999999999874
No 71
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1e-06 Score=86.02 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=105.3
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.++.+..+...||..+|.+.-++.=+|.++..+++++.||-.+++|+++||.+.-..-.++-+++..|+.++|+.+++++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 46789999999999999988888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
....|..| +--.|.|..++.++ +|++|+..++....-
T Consensus 550 ~~ld~kn~-----l~~~~~~~il~~~~-~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 550 IHLDPKNP-----LCKYHRASILFSLG-RYVEALQELEELKEL 586 (638)
T ss_pred HhcCCCCc-----hhHHHHHHHHHhhc-chHHHHHHHHHHHHh
Confidence 99999865 33347899999998 999999999875443
No 72
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=7.2e-06 Score=65.10 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 99 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~W 99 (235)
.++...|.++-..|+.++|+..+++|++..+.+ .-++..++..+...|++++++..+++.....|+++..-....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~-- 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV-- 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH--
Confidence 467788999999999999999999999987666 568899999999999999999999999998887442222233
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 100 HVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 100 HlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+|+.+...| +.+||++++=..+.+
T Consensus 80 f~Al~L~~~g-r~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLG-RPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 4889988998 999999999777766
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.4e-06 Score=60.50 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
|.+.|+|++|++.+++++..+|+++.+...++.++..+|++++|...+++.....|+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4688999999999999999999999999999999999999999999999999888773
No 74
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.33 E-value=1.4e-05 Score=71.42 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=88.6
Q ss_pred hhHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 22 DFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 22 ~~~~g~~Af~L-~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.-.....|+.+ ...|+|++|+..+++.+...|++ +.++..+|-+++.+|++++|+..+++....+|..|. ..-.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~--~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK--AADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhHH
Confidence 35667778877 56799999999999999999999 579999999999999999999999999999998553 2445
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+..+|.++.+.| ++++|.++|++.|...
T Consensus 220 l~klg~~~~~~g-~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKG-DTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 667999999998 9999999999988763
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.32 E-value=1.2e-05 Score=82.11 Aligned_cols=116 Identities=11% Similarity=0.001 Sum_probs=93.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..++|++.-.|...+.+-.+|-.+...|+|++|+++.+++++++|+++.++..++.++...|+.++++..++
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 37888999999999933344444555557799999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHh--CCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le--~G~~~deAl~~yd~~i~~ 125 (235)
+..+..|.. +. -+++.++. .+ ++.+|++.|++.+..
T Consensus 161 ~l~~~dp~~------~~--~l~layL~~~~~-~~~~AL~~~ekll~~ 198 (822)
T PRK14574 161 ELAERDPTV------QN--YMTLSYLNRATD-RNYDALQASSEAVRL 198 (822)
T ss_pred HhcccCcch------HH--HHHHHHHHHhcc-hHHHHHHHHHHHHHh
Confidence 999887661 22 25666655 33 466699999999987
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=1.6e-06 Score=63.26 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCChhhHHHHHHhhcCCCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~--~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
.|+.+.|+...++++...|. ++..+..+|.++-..|+|++|....++ +..+|.++....-+|.++...|+++||+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 37899999999999999884 455555689999999999999999999 999999999999999999999999999999
Q ss_pred HHHc
Q 026637 79 MEEC 82 (235)
Q Consensus 79 l~~a 82 (235)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8864
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=0.0001 Score=69.03 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=122.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHAL-CHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af-~L~e~g~~~~Ae~~arrAL~L~P~dawA~hal-ahvl~~~Gr~~egi~~l 79 (235)
||+++++..+.+.-. .++.|.++..++- .-.+.|++++|.+..++|.+.+|++..+...+ +.++..+|++++++..+
T Consensus 98 Gd~~~A~k~l~~~~~-~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRNAD-HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888877776433 3445666666644 54899999999999999999999998776544 89999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHh----HHHHHHHHHHhcCcc-
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYL----NALGLLLRVYVRGEL- 154 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~----da~sLL~Rl~l~G~~- 154 (235)
+++.+..|+.+ ...-.++..|+..| ++++|++++.+..... . ....+.- .+...|.+......+
T Consensus 177 ~~~~~~~P~~~-----~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~---~--~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 177 DKLLEVAPRHP-----EVLRLAEQAYIRTG-AWSSLLDILPSMAKAH---V--GDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHhcCCCCH-----HHHHHHHHHHHHHH-hHHHHHHHHHHHHHcC---C--CCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999998854 23334788888988 9999999997766542 1 1122221 221112111111111
Q ss_pred cccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 155 DVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 155 ~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
......|+.++..... ++ -.-+-++-++...|+.+.+.++++..-.
T Consensus 246 ~~l~~~w~~lp~~~~~---~~---~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 246 EGLKRWWKNQSRKTRH---QV---ALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHhCCHHHhC---CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123344444433221 11 1223446677888998888888755443
No 78
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.24 E-value=9.8e-05 Score=75.52 Aligned_cols=117 Identities=5% Similarity=-0.054 Sum_probs=95.7
Q ss_pred CChhhHHHHHHhhcCCCCCCh-hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|+.++|++.+++++..+|.++ .++ -+...+...|++++|+..+++++.-+|....+.-++|-++..+|++++|++.++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999999999985 444 777777788999999999999995556666666666889999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.....|..+.. +-.++..+.+.| ++++|++.+.+.+..
T Consensus 127 kaL~~dP~n~~~-----l~gLa~~y~~~~-q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 127 SSLKKDPTNPDL-----ISGMIMTQADAG-RGGVVLKQATELAER 165 (822)
T ss_pred HHHhhCCCCHHH-----HHHHHHHHhhcC-CHHHHHHHHHHhccc
Confidence 999999885422 225788888987 899999999877665
No 79
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.24 E-value=4e-06 Score=58.97 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=51.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 30 FSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 30 f~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
-.+...++|++|.+..++++.++|+++..+..+|-++..+|++++|+..++++....|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 356778888889999999999999998888889999999999999999888888887764
No 80
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=1.7e-05 Score=72.68 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=99.3
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~--~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+..++++.+.+++..+|.+..++...+.++...|+. +++.....++++++|+|.+|+...+.++...|++++++.+.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 468899999999999999999999999999999874 778899999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhC---CCCH----HHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPM----RKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~---G~~~----deAl~~yd~~i~~ 125 (235)
+.++..++.+ +.|.|........ | .+ ++.+..+++.|..
T Consensus 167 ~~I~~d~~N~-----sAW~~R~~vl~~~~~l~-~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 167 QLLEEDVRNN-----SAWNQRYFVITRSPLLG-GLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHHHCCCch-----hHHHHHHHHHHhccccc-cccccHHHHHHHHHHHHHh
Confidence 9999988843 4566666555433 2 23 5678877788876
No 81
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=1.2e-05 Score=72.56 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
-+-+-|--+++.++|.+|...+.+||+|+|+|+-=+-+.|-||...|.++.||.-.+.++...|+. ..-|-=+++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-----skay~RLG~ 157 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-----SKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-----HHHHHHHHH
Confidence 344556678899999999999999999999999999999999999999999999999999998774 344556999
Q ss_pred HHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~ 180 (235)
+|+.+| +|++|++.|.+.+.-+ .+.. ....=+..+....|-.- .+..+.+=.+++..... +++....|+
T Consensus 158 A~~~~g-k~~~A~~aykKaLeld--P~Ne-~~K~nL~~Ae~~l~e~~---~~~~~~~~~d~~~~ig~-~Pd~~s~~~ 226 (304)
T KOG0553|consen 158 AYLALG-KYEEAIEAYKKALELD--PDNE-SYKSNLKIAEQKLNEPK---SSAQASGSFDMAGLIGA-FPDSRSMFN 226 (304)
T ss_pred HHHccC-cHHHHHHHHHhhhccC--CCcH-HHHHHHHHHHHHhcCCC---cccccccchhhhhhccC-Cccchhhhc
Confidence 999998 9999999999998773 3332 23233555555544322 23334555555555543 245454554
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.21 E-value=1.7e-06 Score=60.41 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINK 53 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P 53 (235)
.|++++|+...++++..+|+++.++..+|.++.+.| ++++|++.+++|++++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 488999999999999999999999999999999999 79999999999999999
No 83
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=1.2e-05 Score=66.28 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCChhhHHHHHHhhcCCCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~---~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
.|+.+++....++++...|+ .+.++..+|.++...|++++|++..++++.++|+++.++-.+|.++...|+...+.
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence 48999999999999976554 35789999999999999999999999999999999999999999999988854433
No 84
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=7.3e-06 Score=57.64 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=58.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hala 63 (235)
++++.++..+++++..+|+++.++..+|.++..+|++.+|.+..+++++++|+++.+.-..+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999988765543
No 85
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=4.2e-06 Score=54.29 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
|.++.++|.++.+.|++++|++.++++|+++|+|+.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567889999999999999999999999999999999998875
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.18 E-value=2.2e-05 Score=78.14 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=107.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ--FM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~--~l 79 (235)
|..++++.++..+--.+|..++.+.+.|..++..|...+|.+.+.-|+.+||+++-+.+++|-++...|+..=+.. ++
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 5667888899999899999999999999999999999999999999999999999999999999999999888888 99
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..+.+..|.++ -.|--++-.+...| +.++|.+.|+.++.-+
T Consensus 744 ~dalr~dp~n~-----eaW~~LG~v~k~~G-d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 744 SDALRLDPLNH-----EAWYYLGEVFKKLG-DSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhhCCCCH-----HHHHHHHHHHHHcc-chHHHHHHHHHHHhhc
Confidence 99999988853 24445888888888 9999999999999874
No 87
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.16 E-value=2.4e-05 Score=73.17 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=94.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...+++++.. |.++...-.++. ...++.+++.+.+++.++.+|+|+..+-++|.++..+|++++|.+.++
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48889999999999994 445543333333 345899999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....-|+.. .+.. +|..+-..| +.++|.++|.+.+.-
T Consensus 353 ~al~~~P~~~----~~~~--La~~~~~~g-~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 353 AALKQRPDAY----DYAW--LADALDRLH-KPEEAAAMRRDGLML 390 (398)
T ss_pred HHHhcCCCHH----HHHH--HHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 9998877742 3444 888888888 899999999887654
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.15 E-value=4.4e-06 Score=57.97 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=57.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hala 63 (235)
.|++++|+..+++++..+|+++.+...+|.++.+.|++++|++..++.+..+|+++..+..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 488999999999999999999999999999999999999999999999999999987766555
No 89
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.6e-05 Score=68.83 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=101.3
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC---FKEAVQFME 80 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr---~~egi~~l~ 80 (235)
.+......+..+..+|+|+.-+-++|-+++.+|+++.|..++++|+.|.|+++...-.+|.+++.+.. ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34556667777888999999999999999999999999999999999999999999999999998875 468999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|... +.- +-+|..+++.| +|.+|+..+...+..
T Consensus 218 ~al~~D~~~i---ral--~lLA~~afe~g-~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANI---RAL--SLLAFAAFEQG-DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccH---HHH--HHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 9999988743 333 34999999998 999999999888765
No 90
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00027 Score=67.52 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=136.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|.+.+.|..+..||+..+|-|--+..-+|-+++-.+-.--|.-.+++|+++.|+|+-.+.+||.+++..++.+||+.-+.
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678899999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
++...... + +-..|-+|-.|-+.+ ++.+|...|.+.|..... .+ .-....+-|...|-+....-. .
T Consensus 457 rai~~~dt-e----~~~l~~LakLye~l~-d~~eAa~~yek~v~~~~~-eg-~~~~~t~ka~~fLA~~f~k~~------~ 522 (559)
T KOG1155|consen 457 RAILLGDT-E----GSALVRLAKLYEELK-DLNEAAQYYEKYVEVSEL-EG-EIDDETIKARLFLAEYFKKMK------D 522 (559)
T ss_pred HHHhcccc-c----hHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHh-hc-ccchHHHHHHHHHHHHHHhhc------c
Confidence 99877655 3 346778999998998 899999999998876411 11 112224556666555444222 2
Q ss_pred hHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 161 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
|+.-..+. ..++.+.-..++++.|+..+++.
T Consensus 523 ~~~As~Ya----------------~~~~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 523 FDEASYYA----------------TLVLKGETECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHH----------------HHHhcCCchHHHHHHHHHHHHHh
Confidence 33322222 22555555678888998888765
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=1.8e-05 Score=76.61 Aligned_cols=114 Identities=8% Similarity=0.053 Sum_probs=99.2
Q ss_pred HHHHHHhhcCCCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 7 CFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 7 al~~~~ral~~~p--~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
....+..+....| .||.++..+|..+--.|+|++|...++.||..+|+|.--+..||-++--..|.+|||..+.++..
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3344444555567 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+-|. |.+..+ ++|..++-+| .|.||++.|=++|.-.
T Consensus 493 LqP~---yVR~Ry--NlgIS~mNlG-~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 493 LQPG---YVRVRY--NLGISCMNLG-AYKEAVKHLLEALSMQ 528 (579)
T ss_pred cCCC---eeeeeh--hhhhhhhhhh-hHHHHHHHHHHHHHhh
Confidence 9854 555555 4999999998 9999999998888764
No 92
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=5.2e-05 Score=69.86 Aligned_cols=187 Identities=16% Similarity=0.094 Sum_probs=139.5
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
++..++..+...+...|.+.-.+-=.|-++++++++++|.+.+++++.++|++..+...++.-+++.|++|=++.++++-
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 56788899999999999999877778899999999999999999999999999999999999999999999999999988
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc--
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR-- 160 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r-- 160 (235)
...=...| ..+-+++||.+-.+ ++|=++.-|.+++..- +. .. -++-.-|-|-.. .|+.||-
T Consensus 351 LqmG~~sp-----eLf~NigLCC~yaq-Q~D~~L~sf~RAlsta---t~---~~---~aaDvWYNlg~v--aV~iGD~nl 413 (478)
T KOG1129|consen 351 LQMGAQSP-----ELFCNIGLCCLYAQ-QIDLVLPSFQRALSTA---TQ---PG---QAADVWYNLGFV--AVTIGDFNL 413 (478)
T ss_pred HHhcCCCh-----HHHhhHHHHHHhhc-chhhhHHHHHHHHhhc---cC---cc---hhhhhhhcccee--EEeccchHH
Confidence 77655533 23446999999987 9999999999988873 21 11 122223333332 2333541
Q ss_pred hHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 161 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
=..-......+-.+|....|.+-. --.+.|+.+.++.|+.+.++..
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLav--L~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLAV--LAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHHH--HHhhcCchHHHHHHHHHhhhhC
Confidence 111111222234567777777642 2358899999999999888754
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.03 E-value=0.0003 Score=71.45 Aligned_cols=124 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred CCChhhHHHHHHhhcCCCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--------DCWSQHALCHVL 66 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--------dawA~halahvl 66 (235)
.|+.++++...++++..... ..+.+..+|.++.+.|++++|++.+++++++... .......++.++
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 36777777777777753221 1245566677777888888888888887776322 234455677778
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+|++++|.+.++++.+.....+.......+.-+|..++..| ++++|.+.+++....
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG-DLDNARRYLNRLENL 641 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 8888888888888877655432211111223333677777777 888888888777554
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.2e-05 Score=74.10 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=93.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh----hCCCCH-H--HHHHHHHHHHHcCCHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK----INKHDC-W--SQHALCHVLQHDCCFKE 74 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~----L~P~da-w--A~halahvl~~~Gr~~e 74 (235)
+....+-..+.+|+...|.||+++.-+|.+--+.+.|++|...++.+|+ .+|..+ | .+.++||++-.+++++|
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 4556667777888888888888888888777777888888888888882 333332 3 26788999999999999
Q ss_pred HHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
||.+++++....|.+. ..|-. +|+.|.-+| .+|.|++.|.++++..
T Consensus 474 AI~~~q~aL~l~~k~~---~~~as--ig~iy~llg-nld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDA---STHAS--IGYIYHLLG-NLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHcCCCch---hHHHH--HHHHHHHhc-ChHHHHHHHHHHHhcC
Confidence 9999999988887754 46765 888888888 8999999999998873
No 95
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.01 E-value=7.6e-05 Score=59.23 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~---dawA~halahvl~~~Gr~~e 74 (235)
+|+.+++....++++..-.+. ..++-.+|..+...|++++|+...++++.-.|+ +......++.++...||++|
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 599999999999999964433 457778999999999999999999999999999 77788889999999999999
Q ss_pred HHHHHHHchh
Q 026637 75 AVQFMEECSS 84 (235)
Q Consensus 75 gi~~l~~a~~ 84 (235)
|++++..+..
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999776553
No 96
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=3.7e-05 Score=73.63 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=92.7
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHH-HHHHHHHHHHHcCCHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCW-SQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~------daw-A~halahvl~~~Gr~~eg 75 (235)
+.++++..++.+....|.-+.+++.+|-+|..+++++.|++.+.+|++|.|+ ++- -+|---.|+..++++.+|
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a 522 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA 522 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence 3455555666666667777777778888888888888888888888888888 543 233334566678888888
Q ss_pred HHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHH
Q 026637 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGL 144 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sL 144 (235)
+..++++....|.|. + -.--+|-+.+.+| +.++|+++|++.+.-- +| -.+++.+.||
T Consensus 523 ~~Ll~KA~e~Dpkce-~----A~~tlaq~~lQ~~-~i~eAielFEksa~lA--rt----~~E~~~a~s~ 579 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCE-Q----AYETLAQFELQRG-KIDEAIELFEKSAQLA--RT----ESEMVHAYSL 579 (606)
T ss_pred HHHHHHHHccCchHH-H----HHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--Hh----HHHHHHHHHH
Confidence 888888888888874 2 2334888888887 8999999998877653 33 2335555554
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.00 E-value=9.6e-06 Score=57.94 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~-------P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
...+..+|.++.+.|+|++|+..+++|+.+. |.-++++..+|.++..+|++++|+.+++++.+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777888888888777777652 223567777777777777777777777776553
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.00 E-value=3.8e-05 Score=68.64 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=80.5
Q ss_pred CChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~eg 75 (235)
|+++++...+++.+..+|+++ .++..+|..+...|+|++|...+++.+...|++ +.++..+|.++..+|+.+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 789999999999999999885 599999999999999999999999999998886 56666679999999999999
Q ss_pred HHHHHHchhhhccC
Q 026637 76 VQFMEECSSTWSSC 89 (235)
Q Consensus 76 i~~l~~a~~~w~~~ 89 (235)
+..+++....+|+.
T Consensus 237 ~~~~~~vi~~yP~s 250 (263)
T PRK10803 237 KAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHCcCC
Confidence 99999999999884
No 99
>PRK15331 chaperone protein SicA; Provisional
Probab=97.99 E-value=5.9e-05 Score=63.02 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
....-+|+-+-+.|++++|+..++--..++|.++.=+..||-|+++++++++|+..+.-+.-..+++|.. ..|.|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-----~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-----VFFTG 112 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-----cchHH
Confidence 3455567778899999999999999999999999999999999999999999999999997776666533 23799
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
.|++..| +.++|+..|...|..
T Consensus 113 qC~l~l~-~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMR-KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhC-CHHHHHHHHHHHHhC
Confidence 9999998 999999999988875
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=0.00018 Score=67.82 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=96.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++.+.++..+++....+|+ +...++-++..+++-.+|.+...++|..+|+|+..++-.+..+..+|+.+.|+...++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5778889999998877765 4556777888889999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
+....|.. | -.|-.||.+|+..| ++++|+....
T Consensus 260 av~lsP~~--f---~~W~~La~~Yi~~~-d~e~ALlaLN 292 (395)
T PF09295_consen 260 AVELSPSE--F---ETWYQLAECYIQLG-DFENALLALN 292 (395)
T ss_pred HHHhCchh--H---HHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 99999884 2 35556999999998 9999997764
No 101
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.94 E-value=1.1e-05 Score=49.98 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=30.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 45 AKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 45 arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
++|||+++|+|+.++..+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 102
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.7e-05 Score=72.50 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=101.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHH-HHHHHhCCHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILA-FSLLELGQMSD-AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~A-f~L~e~g~~~~-Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+..+++..+.-++...|.+...+..+| .++.+.-...| |.+.++++|.++|.-.-|+..+|..+.+.|+.++||..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 5666777777777777777777777775 57777665554 999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+++....|+|+ .|+ |+|.+.-... .+.+++..|..+++..
T Consensus 462 e~~L~~~~D~~----LH~--~Lgd~~~A~N-e~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLIIFPDVN----LHN--HLGDIMRAQN-EPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhccccH----HHH--HHHHHHHHhh-hHHHHHHHHHHHHhcC
Confidence 99999999985 577 7999998886 8999999999998873
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.88 E-value=0.0012 Score=66.98 Aligned_cols=124 Identities=11% Similarity=-0.005 Sum_probs=95.6
Q ss_pred CCChhhHHHHHHhhcCCCCC-Ch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ-ED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~-~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~~ 69 (235)
.|++++++...++++...|. +. .+...+|.++...|++++|+..+++++++.+.. .++...++.++..+
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 48899999999999875443 22 466788899999999999999999999874432 46778899999999
Q ss_pred CCHHHHHHHHHHchhhhccCC---cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 70 CCFKEAVQFMEECSSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~---~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|++++|...++++...-.... ........+.+|..++..| ++++|.+.+++.+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~ 602 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEV 602 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHh
Confidence 999999999999866533211 0111223445788888988 999999999998775
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.86 E-value=0.00093 Score=64.97 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=133.3
Q ss_pred CCChhhHHHHHHhhcCC--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~--------P~dawA~halah 64 (235)
+|++.++....++|+.. +|...-++..+|..+..+|+|++|+..+++|+.|- |.-+-.+-.++-
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 36778888888888864 45566799999999999999999999999999864 334567788999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccCC---cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc--hHhHh
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH--PEVYL 139 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~~---~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~--~~~~~ 139 (235)
++..++++++++..+.++.....+.+ +....++.=.+|-.|+..| +|++|.++|.++|..-.+..+... ...-+
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 99999999999999999976654322 1123344556999999998 999999999999988643222111 11112
Q ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHh----hhcch-hcchhhHHHHHHHhcCCCchHHHHHHHHHH
Q 026637 140 NALGLLLRVYVRGELDVFGNRLKVLADCVAD----QANWY-LECHLDLLILWALANTGEVSKAEDLLKGLK 205 (235)
Q Consensus 140 da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~----~~~~~-~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 205 (235)
+=.+..+ .++-.. ..|..+...... ..+++ ..-+.=.-.+-.+-+.|+.+.+.++.+.+-
T Consensus 413 ~~la~~~-~~~k~~-----~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAY-EELKKY-----EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH-HHhccc-----chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2233332 333222 335555443322 12233 222322333556778899999988876665
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00028 Score=62.93 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=105.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+..-|..++.+.-.-.|.+.-+..+.|.-|+-+|.+++|++...+-|+-||+|.-.+-.---+.--+|+.-++|.-+..
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~ 145 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE 145 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 56666777777766666999999999999999999999999999999999999999999888899999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+..+.++ --||-+|-.|+..| +|++|.=.|+..|-.
T Consensus 146 YL~~F~~D~-----EAW~eLaeiY~~~~-~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 146 YLDKFMNDQ-----EAWHELAEIYLSEG-DFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHhcCcH-----HHHHHHHHHHHhHh-HHHHHHHHHHHHHHc
Confidence 999988763 47888999999998 999999999998866
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.81 E-value=0.00017 Score=72.01 Aligned_cols=114 Identities=15% Similarity=0.245 Sum_probs=93.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L-~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
..+.+..+++|+..+|.||.+...+|.-+.+.++++.|...++++|++ +.+++-++|-++-|+--++|+.+|+...+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999 5566999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
..-|+. | +--.|.--|+-+. .+ +.++++......+
T Consensus 540 l~E~~~-N-~~l~~~~~~i~~~---~~-~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 540 LEEFGD-N-HVLMDGKIHIELT---FN-DREEALDTCIHKL 574 (799)
T ss_pred HHHhhh-h-hhhchhhhhhhhh---cc-cHHHHHHHHHHHH
Confidence 999988 3 1112222233333 35 6788887765544
No 107
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.00092 Score=58.89 Aligned_cols=144 Identities=11% Similarity=0.015 Sum_probs=108.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcC-----
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC----- 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~---g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~G----- 70 (235)
|+.++|....+++++.+|..+++. -++|.++-..++|++|...+++.+.+.|+++ ++..-+|-+....+
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 889999999999999999988765 8899999999999999999999999999986 55566665543333
Q ss_pred -------------CHHHHHHHHHHchhhhccCCc-------------chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 71 -------------CFKEAVQFMEECSSTWSSCSS-------------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 71 -------------r~~egi~~l~~a~~~w~~~~~-------------~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
...+++.-+++.++.+|+.+- .+.. .-++.|-+|+..| .|..|+..++..|.
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~-~e~~ia~~Y~~~~-~y~AA~~r~~~v~~ 203 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK-YELSVAEYYTKRG-AYVAVVNRVEQMLR 203 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-chHHHHHHHHHHHH
Confidence 135788899999999988441 1122 2346899999998 99999999999998
Q ss_pred hhhcCCCCCchHhHhHHHHHHHHHHh-cCc
Q 026637 125 KELEKPDAVHPEVYLNALGLLLRVYV-RGE 153 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~da~sLL~Rl~l-~G~ 153 (235)
.. ++++. .-+|..++-.-.. .|.
T Consensus 204 ~Y---p~t~~---~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 204 DY---PDTQA---TRDALPLMENAYRQLQL 227 (243)
T ss_pred HC---CCCch---HHHHHHHHHHHHHHcCC
Confidence 75 22222 3466666655543 354
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.77 E-value=0.0015 Score=64.40 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=120.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
||+.++|...+.+.+.-++.++.-..++|...-...+|++|++.++.||.+.|||-..+-.++......|+++--..-
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t-- 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET-- 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH--
Confidence 577777777777777777766666666666677777777777777777777777777777777776666666543333
Q ss_pred HchhhhccCCcchhHH-HHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 81 ECSSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
+...|...|+ .| +|--.|+.+...| +|..|+.+.+.-+... . .+++..++--.-++|+|-...=....+++
T Consensus 132 -r~~LLql~~~---~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~-~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 132 -RNQLLQLRPS---QRASWIGFAVAQHLLG-EYKMALEILEEFEKTQ-N--TSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred -HHHHHHhhhh---hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-c--cCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 4444444342 24 6667899999998 9999999998887763 1 33567778889999999886322111234
Q ss_pred chHHHHHHHHhhhcchhcchhhHHH-HHHHhcCCCchHHHHHHHHHHHH
Q 026637 160 RLKVLADCVADQANWYLECHLDLLI-LWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H~-~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
+.+.+-+.-.. -..-|+-.+. +--+..-++.+.+..+...+-.+
T Consensus 204 ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 204 ALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 45544443322 1112222222 11222455666666555555543
No 109
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.76 E-value=0.00012 Score=69.87 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhH-HHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 50 KINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYT-HNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 50 ~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~-H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+-+|++++++.++|.++...|+++||+..+++++...|+.. .. ..|.++|-+|..+| ++++|++.|+++|..
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LG-r~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYRE-EGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999998853 12 23556999999998 999999999999985
No 110
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.75 E-value=0.0017 Score=63.17 Aligned_cols=209 Identities=17% Similarity=0.094 Sum_probs=134.6
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
.|.-......++-.+...|+|+.|+..+++|+.+ .|.-+-..-.+|-++.-++++++|+..++++...-..+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555677777999999999999999999999999 77777778889999999999999999999996654421
Q ss_pred -----CcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHH
Q 026637 90 -----SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVL 164 (235)
Q Consensus 90 -----~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~l 164 (235)
|..-..++ .||..|...| +|++|...+++++.......+....++-.--+.+--.+++.+.-...-.-.+..
T Consensus 275 ~G~~h~~va~~l~--nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 275 FGEDHPAVAATLN--NLAVLYYKQG-KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred cCCCCHHHHHHHH--HHHHHHhccC-ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11112233 4899999988 999999999999887633222222222222222223344443321111111111
Q ss_pred HHHHH-hhhcch-hcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHH-HHHHhh
Q 026637 165 ADCVA-DQANWY-LECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV-QVSSDI 229 (235)
Q Consensus 165 a~~~~-~~~~~~-~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 229 (235)
..... .-..++ ..+-.-..+...+-..|+...++++.++.=...++..+....-+++++ .||++.
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 12211 112222 444445556788889999999999988887777654444344444443 455543
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.74 E-value=0.005 Score=59.04 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=111.6
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
..-+..=.|....+.|.+++|+...+.-++..|+|+|..-..+.++...|+.++|++.++++....|..+ ..+-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-----~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-----LLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----HHHHH
Confidence 3344444566777899999999999999999999999999999999999999999999999999998843 34556
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~ 180 (235)
+|-.++..| ++.+|+.+..+.+... +++ -| -|+-|+...... .+.. =.
T Consensus 380 ~a~all~~g-~~~eai~~L~~~~~~~--p~d-------p~-------------------~w~~LAqay~~~-g~~~--~a 427 (484)
T COG4783 380 LAQALLKGG-KPQEAIRILNRYLFND--PED-------PN-------------------GWDLLAQAYAEL-GNRA--EA 427 (484)
T ss_pred HHHHHHhcC-ChHHHHHHHHHHhhcC--CCC-------ch-------------------HHHHHHHHHHHh-CchH--HH
Confidence 999999987 9999999998877663 221 12 344444443321 1111 01
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 026637 181 DLLILWALANTGEVSKAEDLLKGLKSRHSK 210 (235)
Q Consensus 181 d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 210 (235)
..=++-.+..+|+.+.+...+...++..+.
T Consensus 428 ~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 428 LLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 222233455678888788777777777654
No 112
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.72 E-value=0.00063 Score=55.52 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
-.+-..|.++.|.|+++.|.+.+-+||.+.|..+-++.+.+.++-.+|+.+++++-+.++...-..- .--.+|-+-.-+
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Confidence 3566778899999999999999999999999999999999999999999999999999998775332 222456555688
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.|--+| +-|.|..=|..+-.-
T Consensus 123 ~lyRl~g-~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 123 LLYRLLG-NDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHhC-chHHHHHhHHHHHHh
Confidence 8887887 889999988776554
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00013 Score=70.81 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=82.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++++.++++.||...|+|.-..+-+|-.|.-..+..+|+.+++|||+|.|+..-+..+||-.+.-.|.++||+..+-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcc
Q 026637 82 CSSTWSS 88 (235)
Q Consensus 82 a~~~w~~ 88 (235)
++..-+.
T Consensus 524 AL~mq~k 530 (579)
T KOG1125|consen 524 ALSMQRK 530 (579)
T ss_pred HHHhhhc
Confidence 9766544
No 114
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00018 Score=69.78 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=86.9
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
.++++...-+|-.+.|+...-.-.+|.-+..++.+..|++.+.+|++++|+||...|-+|-|.+..+.+.+|+.+++.+.
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 33344444444333333333333455566678899999999999999999999999999999999999999999999986
Q ss_pred hhhcc-CCcchhHH-HHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 84 STWSS-CSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 84 ~~w~~-~~~~l~~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..=+. .+....-| .+-+++..+-..+ .+++|+.-|.+++...
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLS 485 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcC
Confidence 21111 01000011 2335888888888 9999999999999874
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00022 Score=72.72 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=108.2
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
..+.|+.+..+||..+|-+-|+-+=+|-+|.++|++.+|..++.+.-+--.+++.++-++|||+..+|++..||..++.+
T Consensus 627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999998888877788889999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHH
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 149 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~ 149 (235)
.+..-.-++ .++.-=||-++++.| .+.++.+..-.++... .++ +....|-+-.+.++-
T Consensus 707 lkkf~~~~~---~~vl~~Lara~y~~~-~~~eak~~ll~a~~~~--p~~---~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 707 LKKFYKKNR---SEVLHYLARAWYEAG-KLQEAKEALLKARHLA--PSN---TSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHhcccCC---HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhC--Ccc---chHHhHHHHHHHHHH
Confidence 776442232 233333899999998 8999998887766652 222 224567666666664
No 116
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.67 E-value=0.0016 Score=64.95 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=69.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.++|+..+++..+ .+...++.+.-++...|++++|.+++++-.. +.| |...+.++..++...|+.++|...+
T Consensus 273 g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHH
Confidence 566667666665532 3556666666777777777777777776654 333 3456777777777777777777776
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+...+.-...+ . ...+ -+-..|...| ++++|.++|++...+
T Consensus 349 ~~m~~~g~~~d-~-~~~~--~Li~~y~k~G-~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 349 AGLIRTGFPLD-I-VANT--ALVDLYSKWG-RMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHhCCCCC-e-eehH--HHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 66655432211 1 1222 2555555665 677777777665543
No 117
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.66 E-value=0.00072 Score=68.53 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred hHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 23 FIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 23 ~~~g~~Af--~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
.+.+++|- .+--.|++++|++++.+.+..+|+++.++.+||.|++.+|+.++++-+.--+....|.+. -.|-+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----ELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----HHHHH
Confidence 34555543 444569999999999999999999999999999999999999999999888888988864 47889
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHH
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (235)
+|-...++| .+++|.-.|+++|... ++. .+-+..-++|+=
T Consensus 213 ladls~~~~-~i~qA~~cy~rAI~~~--p~n---~~~~~ers~L~~ 252 (895)
T KOG2076|consen 213 LADLSEQLG-NINQARYCYSRAIQAN--PSN---WELIYERSSLYQ 252 (895)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhcC--Ccc---hHHHHHHHHHHH
Confidence 999999998 9999999999999883 332 334566666665
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.0004 Score=65.55 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+++..+|.+.+.+++...|.++..+...|--|...++++.|.+.+++|+.+.|++-..+..|+.+|...|++++|+..+.
T Consensus 213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hc
Q 026637 81 EC 82 (235)
Q Consensus 81 ~a 82 (235)
.+
T Consensus 293 s~ 294 (395)
T PF09295_consen 293 SC 294 (395)
T ss_pred cC
Confidence 55
No 119
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.59 E-value=0.0012 Score=64.48 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=102.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+..|.+++.+.|..+.++-+.|=+|...|++.+|.+..+.|-.|++.|-..---.+-.+...|+.++|...+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hchhhhc-cCCcchhHH-HHHH--HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWS-SCSSFMYTH-NWWH--VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~-~~~~~l~~H-~~WH--lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...+... ...+..-.- +|.. .|.+|+..| ++..|+..|.....-
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQG-DYGLALKRFHAVLKH 334 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 8766542 112221122 3333 577888887 899999988554433
No 120
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.59 E-value=0.00017 Score=43.20 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
+.++..+|.++.++|++++|++.+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999999986
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.57 E-value=0.0011 Score=56.37 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=103.5
Q ss_pred CCChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcC----
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC---- 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~G---- 70 (235)
.|+..+|....+++....|..+ .+..++|.++-..|+|+.|+..+++-+...|+++ +|..-+|.++..+.
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 3889999999999999888765 5788999999999999999999999999999987 57777777766654
Q ss_pred -------CHHHHHHHHHHchhhhccCCc-------------chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCC
Q 026637 71 -------CFKEAVQFMEECSSTWSSCSS-------------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKP 130 (235)
Q Consensus 71 -------r~~egi~~l~~a~~~w~~~~~-------------~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~ 130 (235)
...+|+..++..+..+|+.+- .+..| -+..|.+|+..| .|..|+..|+..|..- +
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~-~y~aA~~r~~~v~~~y--p- 172 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG-KYKAAIIRFQYVIENY--P- 172 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT--HHHHHHHHHHHHHHS--T-
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-cHHHHHHHHHHHHHHC--C-
Confidence 345899999999999998542 11222 356899999998 9999999999988874 2
Q ss_pred CCCchHhHhHHHHHHHHHHh
Q 026637 131 DAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 131 ~~~~~~~~~da~sLL~Rl~l 150 (235)
+ +...-+|..++-+-..
T Consensus 173 ~---t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 173 D---TPAAEEALARLAEAYY 189 (203)
T ss_dssp T---SHHHHHHHHHHHHHHH
T ss_pred C---CchHHHHHHHHHHHHH
Confidence 2 1223356666555443
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.0011 Score=67.80 Aligned_cols=122 Identities=9% Similarity=0.115 Sum_probs=99.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
||+.+.++-..+||+.++|.+.-++--+|.+..... -|..|.....+|..+||++|-++.-|+.-++..|+++..+.
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 578899999999999999987766555555444444 56679999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++.++..-.. ..+..+.+.-+|-+|-.+| +||+|...|-..+..
T Consensus 292 la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 292 LAEHAIKNTEN--KSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhhh--hHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHcc
Confidence 99988776533 2345665445999998998 899999999777655
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.55 E-value=0.00069 Score=69.69 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=105.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------------------HHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------------------WSQHA 61 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-------------------wA~ha 61 (235)
.|+.+++.+.++.++...|+...++.+.|+.+.+.++++.+..+ +++.+-|.+. .|+.+
T Consensus 44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence 37889999999999999999999999999999999999999888 9999999998 99999
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 62 LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 62 lahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
+|.+|...|+.+++.+.+++..+.+|+.+. .-| ++|.++-+. +.++|+++|.++|....
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~---aLN--n~AY~~ae~--dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPE---IVK--KLATSYEEE--DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHH---HHH--HHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988541 234 489888775 79999999999998854
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.54 E-value=0.00024 Score=50.61 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc--hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 53 P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~--l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+-+.++..+|.++..+|++++|+..++++.......++- .....+.++|.++...| ++++|++.|++.+..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 4557789999999999999999999999998775433321 12345667999999998 999999999998764
No 125
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.50 E-value=0.018 Score=60.65 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=57.5
Q ss_pred CChhhHHHHHHhhcC----CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLP----YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-KHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~----~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~-P~dawA~halahvl~~~Gr~~egi 76 (235)
|+.++++...++... ..|+ ...++.+--++..+|++++|++++++..+.+ +.++..+.++...+...|++++|+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 444555555554432 1222 3344444445555666666666666555554 334555555666666666666666
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+++....--. |+. .+.+ .+-..+...| ++++|+++++..+..
T Consensus 635 ~lf~eM~~~Gv~-PD~-~Tyn--sLI~a~~k~G-~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 635 SIYDDMKKKGVK-PDE-VFFS--ALVDVAGHAG-DLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCC-CCH-HHHH--HHHHHHHhCC-CHHHHHHHHHHHHHc
Confidence 665555433211 111 1111 2333344444 566666666555544
No 126
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00094 Score=60.42 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=80.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+|+...+.....+|+.+.|+++..++-+|-+|.-.. .-.++.++.++||.++|+|.-+..-+|-...++|++++|+.
T Consensus 169 ~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 169 LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 478999999999999999999999999998777654 45669999999999999999999999999999999999999
Q ss_pred HHHHchhhhccC
Q 026637 78 FMEECSSTWSSC 89 (235)
Q Consensus 78 ~l~~a~~~w~~~ 89 (235)
..+.-.+.-|..
T Consensus 249 ~Wq~lL~~lp~~ 260 (287)
T COG4235 249 AWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCCC
Confidence 988888776653
No 127
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0021 Score=57.52 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHl 101 (235)
....|+.+...|+|..|+..++.-+..=|++ +.|+..||.+++.+|+++++...+.+..+.||.+|--- -...-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp--dallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP--DALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh--HHHHHH
Confidence 7788999999999999999999999999998 58999999999999999999999999999999977331 233469
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 102 ALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 102 AL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|.+..++| +.|+|-..|++.|.+.
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHC
Confidence 99999998 9999999999998874
No 128
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.43 E-value=0.014 Score=61.59 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred CChhhHHHHHHhhcCCC-CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
|+.+.++..+++..... ..+...++.+--++...|++++|.+++++..+ +.|| ...+..+...+...|+.++|...
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555554432 12444455555555555555555555555433 2332 34555555555555555555555
Q ss_pred HHHch
Q 026637 79 MEECS 83 (235)
Q Consensus 79 l~~a~ 83 (235)
+++..
T Consensus 565 f~eM~ 569 (1060)
T PLN03218 565 LAEMK 569 (1060)
T ss_pred HHHHH
Confidence 55443
No 129
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0078 Score=55.53 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=83.8
Q ss_pred ChhhHHHHHHhhcCCCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~-----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
++++|.+.+++.+.+.|+. +.++--+|-......++++|.....+|++-||+..-|---+|.|...+|+++.|++
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH
Confidence 5667777777777776643 24555666667777788888888888888888888888888888888888888888
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+++..+.+|..- .-+.--+.-+|-..| +.++.+....+.+..
T Consensus 236 ~~e~v~eQn~~yl----~evl~~L~~~Y~~lg-~~~~~~~fL~~~~~~ 278 (389)
T COG2956 236 ALERVLEQNPEYL----SEVLEMLYECYAQLG-KPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhChHHH----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc
Confidence 8887777775532 223334666676776 777777777776665
No 130
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00067 Score=65.48 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=78.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++.+.....+++..+|+|+-.+++.|.++...|.+.+|.+-+..+++|||+..-++..-|+++...-+++.+++-++.
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888899889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred chhhhccC
Q 026637 82 CSSTWSSC 89 (235)
Q Consensus 82 a~~~w~~~ 89 (235)
+....|++
T Consensus 452 ale~dp~~ 459 (539)
T KOG0548|consen 452 ALELDPSN 459 (539)
T ss_pred HHhcCchh
Confidence 88887764
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.38 E-value=0.0013 Score=52.79 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
.|+++++....++++...|+. +.+...+|.++...|+|++|....+. +.-+|-.+.+...+|.++..+|+.++|+.
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 389999999999999977665 45778899999999999999999866 56677778999999999999999999999
Q ss_pred HHHHc
Q 026637 78 FMEEC 82 (235)
Q Consensus 78 ~l~~a 82 (235)
.++++
T Consensus 140 ~y~~A 144 (145)
T PF09976_consen 140 AYQKA 144 (145)
T ss_pred HHHHh
Confidence 98875
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0019 Score=60.61 Aligned_cols=120 Identities=16% Similarity=0.064 Sum_probs=92.5
Q ss_pred CChhhHHHHHHhhcCCCC-------CCh--------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQ-------QED--------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p-------~~~--------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl 66 (235)
|++..|....+||+..-+ .+. -.|.++|+++...++|.+|+..+.++|++.|+|+-|++..|.++
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 677888888888777422 111 47899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
...|+++.|+..++++....|. |- ..++- -..+..-..- ..+...++|.+...+.
T Consensus 302 l~~~e~~~A~~df~ka~k~~P~-Nk--a~~~e-l~~l~~k~~~-~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 302 LALGEYDLARDDFQKALKLEPS-NK--AARAE-LIKLKQKIRE-YEEKEKKMYANMFAKL 356 (397)
T ss_pred HhhccHHHHHHHHHHHHHhCCC-cH--HHHHH-HHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 9999999999999999999988 41 12221 1222222222 3455678888887763
No 133
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.00052 Score=60.31 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=84.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|=.+-+|--..+++...|.-|.+.+.+|.-+.+.|+||.|-+++.--++|+|..-+|+-+.|-.+++-||+.-|.+-+.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 55667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCC
Q 026637 82 CSSTWSSCS 90 (235)
Q Consensus 82 a~~~w~~~~ 90 (235)
.-...|++|
T Consensus 159 fYQ~D~~DP 167 (297)
T COG4785 159 FYQDDPNDP 167 (297)
T ss_pred HHhcCCCCh
Confidence 999999987
No 134
>PLN03077 Protein ECB2; Provisional
Probab=97.32 E-value=0.023 Score=58.04 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=45.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~ 180 (235)
+-..|...| +.++|+++|++.+..+. +.+......++.+++ -.| ++++-...+..-...+...-+
T Consensus 560 lI~~~~~~G-~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~------~~g-------~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 560 LLTGYVAHG-KGSMAVELFNRMVESGV-NPDEVTFISLLCACS------RSG-------MVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHh------hcC-------hHHHHHHHHHHHHHHhCCCCc
Confidence 445555666 78888888887766542 222222222222222 111 233333333321111111112
Q ss_pred hHHH---HHHHhcCCCchHHHHHHHHHH
Q 026637 181 DLLI---LWALANTGEVSKAEDLLKGLK 205 (235)
Q Consensus 181 d~H~---~~al~~ag~~~~~~~ll~~~~ 205 (235)
-.|| +-+|+++|+.+++.++++.+.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 2343 567899999999999998873
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.31 E-value=0.0088 Score=58.41 Aligned_cols=143 Identities=15% Similarity=0.034 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
|++..+|--+-..|++++|.+...+|++.+|+.+.-+...|.++-..|++++|.++|+.+......+- .-|. -.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR----yiNs-K~a 269 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR----YINS-KCA 269 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----HHHH-HHH
Confidence 67788888899999999999999999999999999999999999999999999999999999988862 2343 467
Q ss_pred HHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHH---------HHHhcCcccccccchHHHHHHHHhhhc
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL---------RVYVRGELDVFGNRLKVLADCVADQAN 173 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~---------Rl~l~G~~~~~g~rw~~la~~~~~~~~ 173 (235)
-+.|..| ++++|.++...-.+.+ . .+..++.|-=.+-| |..-.|.. =.|+..|........+
T Consensus 270 Ky~LRa~-~~e~A~~~~~~Ftr~~--~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A---Lk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 270 KYLLRAG-RIEEAEKTASLFTRED--V---DPLSNLNDMQCMWFETECAEAYLRQGDYGLA---LKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhcCCC--C---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHhc
Confidence 7788887 9999999986655442 1 23444444333333 32222221 2467777766665444
Q ss_pred chhcchhhHH
Q 026637 174 WYLECHLDLL 183 (235)
Q Consensus 174 ~~~~~F~d~H 183 (235)
|.. |+|
T Consensus 341 DQf----DFH 346 (517)
T PF12569_consen 341 DQF----DFH 346 (517)
T ss_pred ccc----cHH
Confidence 444 788
No 136
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.30 E-value=0.012 Score=58.63 Aligned_cols=193 Identities=15% Similarity=0.053 Sum_probs=101.7
Q ss_pred CChhhHHHHHHhhcCC-CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~-~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|+.+++....+..+.. .+.+...++.+--++..+|++++|++++++..+ .|...+.++...+...|+.++|+..++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444443 244555556666666677777777777776543 355677777777777777777777777
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhH----------hHHHHHHHHHHh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY----------LNALGLLLRVYV 150 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~----------~da~sLL~Rl~l 150 (235)
+....-.. |+. ..+-.+-.++...| .+++++++|+.......-+++...+.-+ -+|..++=+
T Consensus 416 ~M~~~g~~-Pd~---~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--- 487 (697)
T PLN03081 416 RMIAEGVA-PNH---VTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--- 487 (697)
T ss_pred HHHHhCCC-CCH---HHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---
Confidence 76544322 221 11112333344455 7777777776665421011111111112 233333211
Q ss_pred cCcccccccchHHHHHHHHhhh----------------cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 151 RGELDVFGNRLKVLADCVADQA----------------NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 151 ~G~~~~~g~rw~~la~~~~~~~----------------~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.+..++ ..-|..|......+. +.....+ .-.+-.++..|+.+.+.++++.|++..
T Consensus 488 ~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y--~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 488 APFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY--VVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch--HHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 122211 234666655543321 1111112 222446889999999999999999875
No 137
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.0042 Score=49.42 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=64.4
Q ss_pred CChhhHHHHHHhhcCCCCC--------Chh--------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ--------EDF--------------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~--------~~~--------------~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ 59 (235)
|+.+......++++..+.+ ++| ++.-++-.+.+.|++++|+..++++++++|.|-.++
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 5777888888999987632 122 233344467789999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 60 HALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 60 halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
-.+-.++..+|+..+++..+++..+..
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999998886554
No 138
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.25 E-value=0.00097 Score=56.61 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=67.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-- 71 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~----------~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr-- 71 (235)
++.++...+.....+|.|+..+..-|.+|.|..+ +.+|+.-+++||.|||+...|+..+|.++..+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4678889999999999999999999999998744 4568888999999999999999999999988776
Q ss_pred ---------HHHHHHHHHHchhhhcc
Q 026637 72 ---------FKEAVQFMEECSSTWSS 88 (235)
Q Consensus 72 ---------~~egi~~l~~a~~~w~~ 88 (235)
+++|...++++....|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56667777777777766
No 139
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.23 E-value=0.00059 Score=41.12 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
.++..+|..+...|++++|+..+++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567889999999999999999999999999975
No 140
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.21 E-value=0.0066 Score=61.78 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=67.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||.++|...+..++..+|..+-++.++|-++++.|+...+-...-.|--|||+|..-+-.++--...+|..++|+-.+.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~ 121 (235)
++...|. + --+.|--+..+...| ++-+|++-|.+
T Consensus 233 AI~~~p~-n----~~~~~ers~L~~~~G-~~~~Am~~f~~ 266 (895)
T KOG2076|consen 233 AIQANPS-N----WELIYERSSLYQKTG-DLKRAMETFLQ 266 (895)
T ss_pred HHhcCCc-c----hHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 6555544 2 123344444444444 45555554433
No 141
>PLN03077 Protein ECB2; Provisional
Probab=97.19 E-value=0.053 Score=55.43 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=111.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.++|+..+.+. +.+...++.+--++...|+.++|.+++++..+ +.||.. ....+-.++...|+.++|+.++
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHH
Confidence 6667777777665 45666777777788888999999998887766 456543 5667777788889999999888
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
++..+..+-.|+. .|+. -+-..+-..| ++++|.+++++.- . +.+......+++++ .+.|- +..+.
T Consensus 613 ~~M~~~~gi~P~~--~~y~-~lv~~l~r~G-~~~eA~~~~~~m~---~-~pd~~~~~aLl~ac------~~~~~-~e~~e 677 (857)
T PLN03077 613 HSMEEKYSITPNL--KHYA-CVVDLLGRAG-KLTEAYNFINKMP---I-TPDPAVWGALLNAC------RIHRH-VELGE 677 (857)
T ss_pred HHHHHHhCCCCch--HHHH-HHHHHHHhCC-CHHHHHHHHHHCC---C-CCCHHHHHHHHHHH------HHcCC-hHHHH
Confidence 8887655544543 3332 2445555666 8899998887751 1 11111222333332 22232 22222
Q ss_pred chHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 160 RLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.+++.+.+-.++.... -+...-.++.+|+.+.+.++.+.|++..
T Consensus 678 ---~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 678 ---LAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred ---HHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 2233322211121111 1122235788999999999999999874
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.027 Score=53.70 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=119.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
.++..++..+++++..+|.+..++-+.|-.|...|+..+|.-.+|.|.-|.|-+-..+--+-|.|.-+|+++||......
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhhhccCCcchhHHHHHHH-HHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHH-hcCccccccc
Q 026637 82 CSSTWSSCSSFMYTHNWWHV-ALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY-VRGELDVFGN 159 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHl-AL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~-l~G~~~~~g~ 159 (235)
+.+..+... ++--. + ++.++....--|+|.+.|++.+..+ ++ ++-|+-++--|. ++|-. +|
T Consensus 394 ~~~~~~~sA---~~LtL--~g~~V~~~dp~~rEKAKkf~ek~L~~~---P~------Y~~AV~~~AEL~~~Eg~~---~D 456 (564)
T KOG1174|consen 394 TIRLFQNSA---RSLTL--FGTLVLFPDPRMREKAKKFAEKSLKIN---PI------YTPAVNLIAELCQVEGPT---KD 456 (564)
T ss_pred HHHHhhcch---hhhhh--hcceeeccCchhHHHHHHHHHhhhccC---Cc------cHHHHHHHHHHHHhhCcc---ch
Confidence 888877632 11111 2 2344443222589999999999873 22 455555554444 35543 66
Q ss_pred chHHHHHHHHhhhcc
Q 026637 160 RLKVLADCVADQANW 174 (235)
Q Consensus 160 rw~~la~~~~~~~~~ 174 (235)
-.+-|-.++...++.
T Consensus 457 ~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHHHHHHHhhcccc
Confidence 666666666654443
No 143
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.12 E-value=0.011 Score=58.91 Aligned_cols=117 Identities=10% Similarity=0.068 Sum_probs=104.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|..+++++..+++|..+|+++-++-|+|-+++..++.+.|.+.+-..+...|+.+--+-.++..-+..|..-.|...++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHh--CCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le--~G~~~deAl~~yd~~i~~ 125 (235)
+..-.+|... -+| ++...+| .| ..+.|..+..+++..
T Consensus 744 rarlkNPk~~-----~lw--le~Ir~ElR~g-n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 744 RARLKNPKNA-----LLW--LESIRMELRAG-NKEQAELLMAKALQE 782 (913)
T ss_pred HHHhcCCCcc-----hhH--HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999998843 245 5555544 66 899999999888765
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.011 Score=51.98 Aligned_cols=104 Identities=11% Similarity=-0.040 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ---HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~---halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+.-.|..+.+.|+|++|++.+++.+...|+.+++. ..+|-+++..|++++|+..+++.....|+.|..-...+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 445566677888899999999999999999999999887 78899999999999999999999999999775533333
Q ss_pred HHHHHHHHHhCC---------------C--CHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGH---------------S--PMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G---------------~--~~deAl~~yd~~i~~~ 126 (235)
- +|++++..+ + ...+|+..|++-|...
T Consensus 111 ~--~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y 154 (243)
T PRK10866 111 M--RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY 154 (243)
T ss_pred H--HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence 3 666543332 0 1356778888888874
No 145
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.09 E-value=0.0046 Score=61.79 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=113.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+++.++....++.+..+|.....+..+|.+-.+.+++..|.+.+-+.+.++|++..++.+++-.+...|+-.++..-+.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 67889999999999999988877777777777889999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
+..-.-. | . -+|-+.-+...+-| .+|+|++.|.+.+.-+..++ ..+++.+-+-.+-++..
T Consensus 579 AlKcn~~-~-w---~iWENymlvsvdvg-e~eda~~A~~rll~~~~~~~---d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 579 ALKCNYQ-H-W---QIWENYMLVSVDVG-EFEDAIKAYHRLLDLRKKYK---DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HhhcCCC-C-C---eeeechhhhhhhcc-cHHHHHHHHHHHHHhhhhcc---cchhhHHHHHHHHhhcc
Confidence 9877622 2 1 25666777788888 99999999988877653222 34445555555555554
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0056 Score=60.03 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=106.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++++...+.+++...|++..+..+.=.++.+.+.|++|....+.=..+.-.+..- +--+.+++..++.+|++.-++.
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHHHHHHHhc
Confidence 567788888888888888888888888888888888888876655444333232222 4677888888888888888775
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRL 161 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw 161 (235)
..+..+. .-|. -|-..+.+| +||+++.+|..-+.-. .....+ -=-++|+-+--.. +++ |
T Consensus 105 ~~~~~~~-----ll~L---~AQvlYrl~-~ydealdiY~~L~kn~-----~dd~d~-~~r~nl~a~~a~l-----~~~-~ 163 (652)
T KOG2376|consen 105 LDRLDDK-----LLEL---RAQVLYRLE-RYDEALDIYQHLAKNN-----SDDQDE-ERRANLLAVAAAL-----QVQ-L 163 (652)
T ss_pred ccccchH-----HHHH---HHHHHHHHh-hHHHHHHHHHHHHhcC-----CchHHH-HHHHHHHHHHHhh-----hHH-H
Confidence 5444321 1344 566666777 8888888885443331 111111 1112222221111 112 3
Q ss_pred HHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHH
Q 026637 162 KVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGL 204 (235)
Q Consensus 162 ~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~ 204 (235)
....+... .+.+-+.||.. ..++..|+...|.++|+.-
T Consensus 164 ~q~v~~v~--e~syel~yN~A---c~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 164 LQSVPEVP--EDSYELLYNTA---CILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhccCCC--cchHHHHHHHH---HHHHhcccHHHHHHHHHHH
Confidence 33322222 33566667764 4778899999999998877
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.05 E-value=0.0031 Score=57.07 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=66.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF-KEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~-~egi~~l~~a 82 (235)
...+.-.++......|..+..+..+|.+...+|+|++|++...+|+..+|+|+.++.++.-+...+|+. ++.-+++.+-
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 455666666666666778889999999999999999999999999999999999999999999999999 5566677777
Q ss_pred hhhhccC
Q 026637 83 SSTWSSC 89 (235)
Q Consensus 83 ~~~w~~~ 89 (235)
....|..
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 7776653
No 148
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.02 Score=52.95 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=94.4
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d-awA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+.+.++..+.||+..+|...-+--++|-+....|+|..|.+..++.++-||.. +...-.+.++|...|+.++++.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999988 78888999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.+..+... . -+- ++-.-.+..| .++|.....+.+.+
T Consensus 275 ~~~~~~g~~-~---~l~--l~~lie~~~G-~~~Aq~~l~~Ql~r 311 (389)
T COG2956 275 AMETNTGAD-A---ELM--LADLIELQEG-IDAAQAYLTRQLRR 311 (389)
T ss_pred HHHccCCcc-H---HHH--HHHHHHHhhC-hHHHHHHHHHHHhh
Confidence 999887742 1 121 3333333333 67777777777776
No 149
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.93 E-value=0.0095 Score=48.72 Aligned_cols=103 Identities=12% Similarity=0.076 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+..-|....+.|+|.+|++..+.-..--|..+ .|.-.++.+++.+|++++|++-+++.+++.|..|.. .-.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v--dYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV--DYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc--cHH
Confidence 345667778888899999999999888888877765 567778999999999999999999999999987754 234
Q ss_pred HHHHHHHHHhCCCC---------------HHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSP---------------MRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~---------------~deAl~~yd~~i~~~ 126 (235)
+-..||.+++.. + ..+|+.-|.+.|..-
T Consensus 87 ~Y~~gL~~~~~~-~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 87 YYMRGLSYYEQD-EGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHHHHh-hhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 446888888875 6 888888888877653
No 150
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0037 Score=60.50 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=84.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||++.+......++.++|.+...+++.+-++.-.|+|.+|.+-+.+.+.|||+=+-++..+|-+++-.|++++|+.-+.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcc
Q 026637 82 CSSTWSS 88 (235)
Q Consensus 82 a~~~w~~ 88 (235)
-....|+
T Consensus 96 GL~~d~~ 102 (539)
T KOG0548|consen 96 GLEKDPS 102 (539)
T ss_pred HhhcCCc
Confidence 9888877
No 151
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.89 E-value=0.0032 Score=58.64 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=88.5
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.|.+..-|--+|-.+..+|++..|...+-.|++++|++-.|+...|.|+.-.|+.+.|+.-+++....-|+ |+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---FMAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---HHHHHH
Confidence 34556667777888889999999999999999999999999999999999999999999999999888744 666776
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
- -+..+|..| ++|+|..=|+..|..+
T Consensus 111 Q--Rg~vllK~G-ele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 111 Q--RGVVLLKQG-ELEQAEADFDQVLQHE 136 (504)
T ss_pred H--hchhhhhcc-cHHHHHHHHHHHHhcC
Confidence 4 778888988 9999999998888763
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.86 E-value=0.0045 Score=56.02 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHchhhhccCCcchhHHH
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--FKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr--~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
+......+.-+++...||+|.|++..+..-..+.++.-..-+-++|...+|. +.++.-++++-....+..+ ...|
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~---~~ln 205 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP---KLLN 205 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH---HHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 5566777777899999999999999999999999999999999999999984 8999999999766654422 2334
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
-+|.+++.+| +|++|.+++.+.+..
T Consensus 206 --g~A~~~l~~~-~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 206 --GLAVCHLQLG-HYEEAEELLEEALEK 230 (290)
T ss_dssp --HHHHHHHHCT--HHHHHHHHHHHCCC
T ss_pred --HHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 4999999998 999999999988765
No 153
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.84 E-value=0.032 Score=45.66 Aligned_cols=70 Identities=9% Similarity=0.000 Sum_probs=55.7
Q ss_pred CChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCC 71 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr 71 (235)
|+..+|....+.+..-+|..+ .+.-.++.++-.+|+|++|.+.++|-+.|+|+++ +|+.-.|.+...+..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 778888888888888777655 4778899999999999999999999999999997 455555555544443
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.83 E-value=0.012 Score=58.77 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=93.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af-~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
||.++++..+.+++..+|++-.. ...++ ..-++.++++|..+..+|-+..|.-- .+.--++..-.+|..+|++.+++
T Consensus 598 gdv~~ar~il~~af~~~pnseei-wlaavKle~en~e~eraR~llakar~~sgTeR-v~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEI-WLAAVKLEFENDELERARDLLAKARSISGTER-VWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHH-HHHHHHHhhccccHHHHHHHHHHHhccCCcch-hhHHHhHHHHHhhhHHHHHHHHH
Confidence 78899999999999999984433 34455 45567799999999999999888754 56667788889999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++...+|.++ -+|--++..+-..+ +.+.|.+.|..-+..
T Consensus 676 e~lk~fp~f~-----Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 676 EALKSFPDFH-----KLWLMLGQIEEQME-NIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHhCCchH-----HHHHHHhHHHHHHH-HHHHHHHHHHhcccc
Confidence 9999998853 36666777776776 899999999887665
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=96.78 E-value=0.0066 Score=50.82 Aligned_cols=85 Identities=15% Similarity=-0.056 Sum_probs=77.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|...++-..-.+|.++...--+|-++...++|++|+..+-.|..+.++||-..+-.|-++.+.|+.++|..-++
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 38899999999988888888877666778889999999999999999999999999999999999999999999999999
Q ss_pred Hchhh
Q 026637 81 ECSST 85 (235)
Q Consensus 81 ~a~~~ 85 (235)
.+...
T Consensus 130 ~a~~~ 134 (165)
T PRK15331 130 LVNER 134 (165)
T ss_pred HHHhC
Confidence 88873
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.75 E-value=0.0012 Score=40.72 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHH
Q 026637 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEE 43 (235)
Q Consensus 11 ~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~ 43 (235)
.+|+++.+|+++.++..+|.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578999999999999999999999999999974
No 157
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.68 E-value=0.0087 Score=52.17 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=79.9
Q ss_pred CChhhHHHHHHhhcCCCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~-----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
|++.+|....++||..-|.- +-.+++.|.++...+....|+..+-+|++|||...-|+-..|-+|+..-.+++++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999999999988853 4688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHchhhhcc
Q 026637 77 QFMEECSSTWSS 88 (235)
Q Consensus 77 ~~l~~a~~~w~~ 88 (235)
.-+.+-....|.
T Consensus 189 eDyKki~E~dPs 200 (271)
T KOG4234|consen 189 EDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHhCcc
Confidence 999988888765
No 158
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.015 Score=56.06 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=85.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+.+......+|.-+..-..++.+.|...+..|++++|...+-+--++=.|++..+..++.+++...++..+|+|+-+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 77888888888888877777788888888888888888888888888888888888888888888888888888888888
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y 119 (235)
+...-|.+|.. .--+|-.|-.-| +-..|...|
T Consensus 584 ~~slip~dp~i-----lskl~dlydqeg-dksqafq~~ 615 (840)
T KOG2003|consen 584 ANSLIPNDPAI-----LSKLADLYDQEG-DKSQAFQCH 615 (840)
T ss_pred hcccCCCCHHH-----HHHHHHHhhccc-chhhhhhhh
Confidence 87777776632 223555554444 555555543
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.65 E-value=0.0086 Score=53.43 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=85.9
Q ss_pred CChhhHHHHHHhhcCCC--CCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCCC----HHHHHHHHHHHHHc
Q 026637 2 GRPDLCFDIIHQVLPYN--QQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHD----CWSQHALCHVLQHD 69 (235)
Q Consensus 2 G~~~~al~~~~ral~~~--p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--~P~d----awA~halahvl~~~ 69 (235)
|+++++.....++.... -++. ..+..-+-.+.+. ++++|+...++|+.+ .-++ +-.+-.+|.+++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 56677777777776632 1222 2334444455444 999999999999997 2222 56788999999999
Q ss_pred -CCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 70 -CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 70 -Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|++++|+..++++.......+.. ......-.+|.++...| +|++|+++|++.+...
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 99999999999998887664422 12235567999999998 9999999999887754
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.65 E-value=0.027 Score=47.91 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+.-.|..+.+.|+|.+|.+.+++.+...|+++ .|...++.+++..|++++++..+++.+...|+.+..- ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~--~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD--YA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH--HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh--hH
Confidence 445667788889999999999999999999999886 5677899999999999999999999999999976432 23
Q ss_pred HHHHHHHHHhCC----------CCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGH----------SPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G----------~~~deAl~~yd~~i~~~ 126 (235)
...+|++++... ....+|+..|...|...
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 334666654421 03457888888888774
No 161
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.62 E-value=0.018 Score=53.86 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=102.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+...++...-.|++.+|++..+..-.|.++...|+-..|..=..|.|++.|+..-|--..|+|+..+|..++|.+-+..
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchh---------HH-HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMY---------TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~---------~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.....|+.+.... -| +.-|....++-.| |+..|++..+.-|..
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G-D~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG-DCQNAIEMITHLLEI 184 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHhc
Confidence 9888876332111 11 2233445555666 899999888665544
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.61 E-value=0.013 Score=60.51 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=94.6
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+.+.++...-|++..+|..+-+...+|-.+.+--++-+|.+.+++|++|+|.|+.+.-+.+..+-.....+++.+.....
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45667788889999999999999999999999889999999999999999999999999999998888888888875554
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+.- +-+..-.||-|.+++|++.+ +.-.++..+..+++.
T Consensus 553 ~qka---~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~ 591 (1238)
T KOG1127|consen 553 AQKA---PAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRT 591 (1238)
T ss_pred hhhc---hHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcC
Confidence 4433 32334446666777777776 677777777666655
No 163
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.57 E-value=0.015 Score=60.06 Aligned_cols=140 Identities=9% Similarity=0.094 Sum_probs=92.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch
Q 026637 14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM 93 (235)
Q Consensus 14 al~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l 93 (235)
.+-..|++-+++..+|.++..+|++++|.++.+++|.++|+|+.++.++|..+... +.++|+..+.++....-....+-
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 33345566699999999999999999999999999999999999999999999999 99999999999976643321110
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHH
Q 026637 94 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVA 169 (235)
Q Consensus 94 ~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~ 169 (235)
..-.+| .-++...- +++|.=+.+..+..... + ..-++|..--||=-.=. +.+|++.-..+.
T Consensus 187 ~~~e~W-~k~~~~~~-~d~d~f~~i~~ki~~~~----~---~~~~~~~~~~l~~~y~~------~~~~~~~i~iLK 247 (906)
T PRK14720 187 GIEEIW-SKLVHYNS-DDFDFFLRIERKVLGHR----E---FTRLVGLLEDLYEPYKA------LEDWDEVIYILK 247 (906)
T ss_pred HHHHHH-HHHHhcCc-ccchHHHHHHHHHHhhh----c---cchhHHHHHHHHHHHhh------hhhhhHHHHHHH
Confidence 111223 44555454 35666555543332221 1 22245555555544332 344555554444
No 164
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.015 Score=52.08 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=79.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~e 74 (235)
.||...|.+.+..-+.-+|++.| ++.-+|-++-.+|+|++|...+.+++.-.|+.+ .++.-||.++...|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 37888888888888888887664 778888899999999999999999999888875 569999999999999999
Q ss_pred HHHHHHHchhhhccCC
Q 026637 75 AVQFMEECSSTWSSCS 90 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~ 90 (235)
|...+++....+|..+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 9999999999998854
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.47 E-value=0.067 Score=46.32 Aligned_cols=115 Identities=19% Similarity=0.083 Sum_probs=65.9
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+....+...+.+...|... -..-+|-.+.|.|++.||+..+.+|++ +--+|+..+-.++.+....+++.++...+++-
T Consensus 72 P~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444555554444322 122345567777777777777777765 56667777777777777777777777777766
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
.+..|...+ ...|.. +|-.+-.+| .++.|...|+..|
T Consensus 151 ~e~~pa~r~-pd~~Ll--~aR~laa~g-~~a~Aesafe~a~ 187 (251)
T COG4700 151 MEYNPAFRS-PDGHLL--FARTLAAQG-KYADAESAFEVAI 187 (251)
T ss_pred hhcCCccCC-CCchHH--HHHHHHhcC-CchhHHHHHHHHH
Confidence 665554221 133443 455554444 6665555554444
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.47 E-value=0.13 Score=39.38 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=72.5
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINK---HDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af-~L~e~g~~~~Ae~~arrAL~L~P---~dawA~halahvl~~~Gr~~egi~~l 79 (235)
...+.....+++...+........... .+...|++++|.....+++.++| .........+..+...|+.++++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 345556666666655555444445555 66677777777777777777666 35555666666666777777777777
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+.....+.. . ...+.-++..+...+ +++++...+...+..
T Consensus 191 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~ 231 (291)
T COG0457 191 EKALKLNPDD--D--AEALLNLGLLYLKLG-KYEEALEYYEKALEL 231 (291)
T ss_pred HHHHhhCccc--c--hHHHHHhhHHHHHcc-cHHHHHHHHHHHHhh
Confidence 7776666552 0 122333666666665 677777777666665
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.011 Score=55.69 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~ 73 (235)
++++..++.++.+||...|++.=+++-.|-++.+.|+|+.|+..+++|++++|+|-.+...+.-....--+..
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999877777776655444443
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.44 E-value=0.075 Score=46.00 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCChhhHHHHHHhhcC-CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~-~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~Gr~~egi~ 77 (235)
+||..++....++++. ...+|+-++--+|-++-+.+++.+|...-+.-.+-||. .|..+-.++-++..+|+.+++..
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 3667777777777776 55666666666666777777777777777777776664 36666667777777777777777
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y 119 (235)
-++.+....|.. ..... .+-++..+| +-+++.+-|
T Consensus 182 afe~a~~~ypg~----~ar~~--Y~e~La~qg-r~~ea~aq~ 216 (251)
T COG4700 182 AFEVAISYYPGP----QARIY--YAEMLAKQG-RLREANAQY 216 (251)
T ss_pred HHHHHHHhCCCH----HHHHH--HHHHHHHhc-chhHHHHHH
Confidence 777776666552 23333 455555665 566665544
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.011 Score=56.11 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=93.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHH------------HHHHHHHhCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGI------------LAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHV 65 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~------------~Af~L~e~g~~~~Ae~~arrAL~L~P~da----wA~halahv 65 (235)
++.+.+....+++|..+|+..-.-.+ -|--+-.+|.|..|++.+..||.++|++. --+.++|-|
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 45667777888888888875432221 22333458999999999999999999873 457889999
Q ss_pred HHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
....||.+|||.-.+.+..+.+..- .-.---|.+|+.++ ++++|++-|.+++...
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syi-----kall~ra~c~l~le-~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYI-----KALLRRANCHLALE-KWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 9999999999999999999986641 22223789999998 9999999999999874
No 170
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.36 E-value=0.014 Score=57.81 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=90.8
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+....+..++++|.-.|+.+.-+.|.|..|--.|+-++|-...|.++..+|.+.--+|.+|-++-...+++|+|..++++
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45566778888888899999999999999999999999999999999999999888999999999999999999999998
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHH
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~ 117 (235)
...-|+ | .-+|--+++.....| +|+-.+.
T Consensus 102 l~~~~d-N----~qilrDlslLQ~QmR-d~~~~~~ 130 (700)
T KOG1156|consen 102 LKIEKD-N----LQILRDLSLLQIQMR-DYEGYLE 130 (700)
T ss_pred HhcCCC-c----HHHHHHHHHHHHHHH-hhhhHHH
Confidence 887766 5 346667888887777 6765544
No 171
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.35 E-value=0.018 Score=53.47 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=98.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~ 78 (235)
|+++.++....|.|..--.+|....++|......+++|-+...++||++..-++ +..+.+++||....|++.-+-.-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 678889999999999988999999999999999999999999999999987654 57789999999999999999998
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
++=+....++.. ..-| ++|......| ++++|..+|..+-
T Consensus 418 frlaL~~d~~h~---ealn--NLavL~~r~G-~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 418 FRLALTSDAQHG---EALN--NLAVLAARSG-DILGARSLLNAAK 456 (478)
T ss_pred HHHHhccCcchH---HHHH--hHHHHHhhcC-chHHHHHHHHHhh
Confidence 888887776522 2334 4998888887 9999999996643
No 172
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.29 E-value=0.0083 Score=35.80 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
++.++|-.+.+.|++++|.+..+++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788899999999999999999999999953
No 173
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.19 E-value=0.077 Score=51.12 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=92.8
Q ss_pred CChhhHHHHHHhhcCCCC-CChh----HHHHHHHHH----H--HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026637 2 GRPDLCFDIIHQVLPYNQ-QEDF----IFGILAFSL----L--ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p-~~~~----~~g~~Af~L----~--e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G 70 (235)
||.+..+..+.++..... ..+. .+.++.++. . .....++|+++..+.++.=|+.++-...-|.++..+|
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g 281 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG 281 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 788888999998877432 2221 233333322 2 3447888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHch---hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 71 CFKEAVQFMEECS---STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 71 r~~egi~~l~~a~---~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.++|++.++++. ..|++. ..-..|=++.+++-++ ++++|...|+..+..
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql----~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQL----HHLCYFELAWCHMFQH-DWEEAAEYFLRLLKE 334 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhH----HHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhc
Confidence 9999999999764 567653 2236888999999998 999999999887765
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.18 E-value=0.29 Score=37.44 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=94.9
Q ss_pred CCChhhHHHHHHhhcCCCC---CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ---QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-DCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p---~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-dawA~halahvl~~~Gr~~egi 76 (235)
+|+.+.+....++++...| .........+-.+...+++++|.....+++...|+ +..+...++..+...|.+++++
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 4788899999999988666 23344444444567889999999999999999999 7999999999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+.......+.. ...+.+.+..+...| .++++...+.+.+..
T Consensus 223 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 265 (291)
T COG0457 223 EYYEKALELDPDN-----AEALYNLALLLLELG-RYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhCccc-----HHHHhhHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999998887651 123334555555655 899999999888876
No 175
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.021 Score=50.80 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=79.0
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+...+.+...|++-.+|.-+-.+.+-+..+....+++..++-.+||+++.||..-++..++-++.....+++||..+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 45678889999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 026637 83 SSTWSS 88 (235)
Q Consensus 83 ~~~w~~ 88 (235)
...-..
T Consensus 105 ~sl~r~ 110 (284)
T KOG4642|consen 105 YSLLRE 110 (284)
T ss_pred HHHHhc
Confidence 655443
No 176
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.041 Score=54.12 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=82.3
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHH
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 113 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~d 113 (235)
.+|+|++|+..+-+-|...|+|..|.|.--.++...++|++++.+++.....-.. +. +..|.|.|++.++ ..|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~-----~~fEKAYc~Yrln-k~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NS-----FFFEKAYCEYRLN-KLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-ch-----hhHHHHHHHHHcc-cHH
Confidence 4789999999999999999999999999999999999999999887776543322 22 2268999999998 999
Q ss_pred HHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcc
Q 026637 114 KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 154 (235)
Q Consensus 114 eAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~ 154 (235)
+|+..++ -+ ++.+ ..-+.=-+..||||+.....
T Consensus 97 ealk~~~-~~----~~~~---~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 97 EALKTLK-GL----DRLD---DKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HHHHHHh-cc----cccc---hHHHHHHHHHHHHHhhHHHH
Confidence 9999997 12 1221 21233457889999876553
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.10 E-value=0.13 Score=45.93 Aligned_cols=123 Identities=9% Similarity=0.035 Sum_probs=96.3
Q ss_pred CChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH-------
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQH------- 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~------- 68 (235)
|+..+|....+++....|..+ .+.-+++++.-..++|++|+..++|=+.+.|+++. +..-.|.+..+
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 788899999998888777665 58899999999999999999999999999999874 33334443332
Q ss_pred -cCCHHHHHHHHHHchhhhccCC-------------cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 -DCCFKEAVQFMEECSSTWSSCS-------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 -~Gr~~egi~~l~~a~~~w~~~~-------------~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+....+++.-+...+..+|+.+ ..+..|.. ..|.+|++.| .+..|...+++.+...
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em-~IaryY~kr~-~~~AA~nR~~~v~e~y 197 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM-AIARYYLKRG-AYVAAINRFEEVLENY 197 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhc-ChHHHHHHHHHHHhcc
Confidence 2345678888888899998843 12344442 5899999998 9999999999988874
No 178
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.09 E-value=0.14 Score=49.51 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=90.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.+++++++-+.-..--++..++..+|-.++-..+-.+|++..-++.++=|+||..+--++..+...|+-..+....-
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 47778888888877666667778888888888888888888888888888888888888888888887777665544332
Q ss_pred HchhhhccCCcchhH------------------------------HHHHH--HHHHHHhCCCCHHHHHHHHHhhchhhhc
Q 026637 81 ECSSTWSSCSSFMYT------------------------------HNWWH--VALCYLEGHSPMRKVLEIYDNHIWKELE 128 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~------------------------------H~~WH--lAL~~le~G~~~deAl~~yd~~i~~~~~ 128 (235)
..-+..|. + +.. ..-|. .|-|.-..| +|.+|+++|.. |.+.
T Consensus 617 dsyryfp~-n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg-nyqka~d~yk~-~hrk-- 689 (840)
T KOG2003|consen 617 DSYRYFPC-N--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG-NYQKAFDLYKD-IHRK-- 689 (840)
T ss_pred hcccccCc-c--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc-cHHHHHHHHHH-HHHh--
Confidence 22222221 1 011 11122 344444555 88888888844 4331
Q ss_pred CCCCCchHhHhHHHHHHHHHHh
Q 026637 129 KPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 129 ~~~~~~~~~~~da~sLL~Rl~l 150 (235)
++++ +|..-+|-|+.-
T Consensus 690 -----fped-ldclkflvri~~ 705 (840)
T KOG2003|consen 690 -----FPED-LDCLKFLVRIAG 705 (840)
T ss_pred -----Cccc-hHHHHHHHHHhc
Confidence 2333 788888887753
No 179
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.89 E-value=0.051 Score=46.28 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 38 ~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~----------~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
++.|.+.++.....||+|+.+++.=|.++..+.++ ++|+.=+++++...|.. ..-.|.++.+|.+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-----HDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHH
Confidence 67899999999999999999999999999988666 45666677778888763 2456778877755
Q ss_pred CC---CCHHHHHHHHHhhch
Q 026637 108 GH---SPMRKVLEIYDNHIW 124 (235)
Q Consensus 108 ~G---~~~deAl~~yd~~i~ 124 (235)
.| .+..+|-..|+++..
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp HHHH---HHHHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHH
Confidence 43 144455555554443
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.85 E-value=0.056 Score=55.31 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=93.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+++..|+..+.+++...|+-+|+....|.++...|++++|-+.-+.--.+-|+|--.+-++-+|+..+|..++++.++++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 57889999999999999999999999999999999999999666666667888999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPM----RKVLEIYD 120 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~----deAl~~yd 120 (235)
+...+|+. |+.-|+=.+|..-+ .| ..|+++|.
T Consensus 103 ~~~~~P~e------ell~~lFmayvR~~-~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 103 ANQKYPSE------ELLYHLFMAYVREK-SYKKQQKAALQLYK 138 (932)
T ss_pred HHhhCCcH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99888762 55444444554433 33 46788885
No 181
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.024 Score=53.79 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=81.7
Q ss_pred CChhhHHHHHHhhcCCCCC----ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~----~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+...+-.....+|..+|+ ..-.++..|.+..-.|+.++|+.-+..|+.|+|.-.+|++-.|.++.-.+.++++++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888899999999996 457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccC
Q 026637 78 FMEECSSTWSSC 89 (235)
Q Consensus 78 ~l~~a~~~w~~~ 89 (235)
.++++...-.++
T Consensus 343 d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 343 DYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHhhcccc
Confidence 999998887774
No 182
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.68 E-value=0.1 Score=50.23 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=89.0
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----wA~halahvl~~~Gr~~egi~~ 78 (235)
+.+.+...+++....+|+.+.++.+.|-.+.-.|+.++|.+...+|+.....-+ -..+.+++.+..++++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 456678888888889999999999999999999999999999999995333322 3456789999999999999999
Q ss_pred HHHchh--hhccCCcchhHHHHHHHHHHHHhCCCCH-------HHHHHHHHhh
Q 026637 79 MEECSS--TWSSCSSFMYTHNWWHVALCYLEGHSPM-------RKVLEIYDNH 122 (235)
Q Consensus 79 l~~a~~--~w~~~~~~l~~H~~WHlAL~~le~G~~~-------deAl~~yd~~ 122 (235)
+..-.. .|++. + ..+ -.|.++++.| +. ++|.+++.+.
T Consensus 328 f~~L~~~s~WSka--~--Y~Y--~~a~c~~~l~-~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 328 FLRLLKESKWSKA--F--YAY--LAAACLLMLG-REEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhccccHHH--H--HHH--HHHHHHHhhc-cchhhhhhHHHHHHHHHHH
Confidence 988854 56442 2 222 3888999998 77 7777777543
No 183
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.64 E-value=0.17 Score=49.11 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=88.7
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCC----C----------C----HHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-------INK----H----------D----CWS 58 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-------L~P----~----------d----awA 58 (235)
+..-...+.+||..+|+-+.++..+|- ++..-..+|++..+||++ ... . | ..+
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 445567788999999999888887753 223345555555555554 221 0 1 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhH
Q 026637 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 138 (235)
Q Consensus 59 ~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~ 138 (235)
--.+|.+.-..|+.+|||+.+++-.+..|..+ .+..|.+ +--++|+.+ +|+++.++..+.=...+ +.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~Iren--Lie~LLelq-~Yad~q~lL~kYdDi~l-----pkSAti 332 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIREN--LIEALLELQ-AYADVQALLAKYDDISL-----PKSATI 332 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHHHH--HHHHHHhcC-CHHHHHHHHHHhccccC-----CchHHH
Confidence 55788999999999999999999998887643 3345654 888999998 99999888766321111 112346
Q ss_pred hHHHHHH
Q 026637 139 LNALGLL 145 (235)
Q Consensus 139 ~da~sLL 145 (235)
+-..+||
T Consensus 333 ~YTaALL 339 (539)
T PF04184_consen 333 CYTAALL 339 (539)
T ss_pred HHHHHHH
Confidence 6666665
No 184
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.22 Score=44.78 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=97.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|.+..++.+..+|.+--.+--.=-++.-+|.--+|++..-.=|+.-|+|+.|+|-++.+|...|.|+.|+=-++
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 47889999999999999999888877666678889988899999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCC--CHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHS--PMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~--~~deAl~~yd~~i~~ 125 (235)
+..=..|..| . +|-- +|-.++-.|| +++-+.+.|.+.+--
T Consensus 179 E~ll~~P~n~-l--~f~r--lae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQPFNP-L--YFQR--LAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCCCcH-H--HHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9988887733 2 3322 4444433342 356677788777655
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.61 E-value=0.036 Score=57.45 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 28 ~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
.|..+.|.+++-.|..-++-||..+|+|-..+-.+|.+|...||...++..+.++....|..- .+.+ ..|...-.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y~~f--k~A~~ecd 642 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---YGRF--KEAVMECD 642 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---HHHH--HHHHHHHH
Confidence 344455566666677777777777777777777777777777777777777777777765521 2333 25666666
Q ss_pred CCCCHHHHHHHHHhhchh
Q 026637 108 GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 108 ~G~~~deAl~~yd~~i~~ 125 (235)
.| .|.+++..+...|..
T Consensus 643 ~G-kYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NG-KYKEALDALGLIIYA 659 (1238)
T ss_pred hh-hHHHHHHHHHHHHHH
Confidence 66 777777777766665
No 186
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.60 E-value=0.029 Score=30.82 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
++..+|..+.+.|++++|+...+++++++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45677888888888888888888888888864
No 187
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.57 E-value=0.17 Score=47.66 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=93.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|...++.+++..-+.- ..-.+ ....-++...=++.+++.+...|++|-.+-++|-.+...+.+.+|-.+++
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4788899999999999633322 22222 33456788888999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+.+.-|+.. ..++ +|..+-..| +.++|-..+...+.-.
T Consensus 353 aAl~~~~s~~----~~~~--la~~~~~~g-~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 353 AALKLRPSAS----DYAE--LADALDQLG-EPEEAEQVRREALLLT 391 (400)
T ss_pred HHHhcCCChh----hHHH--HHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 9988876642 2344 899998998 8999999998888554
No 188
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.55 Score=42.88 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=82.7
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC--- 82 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a--- 82 (235)
+.+.++.+++|. .-.....-+..+.+.|++.+|......++...|+++.+...++.+|...|+.+++...+..-
T Consensus 121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 567778888877 22334456778889999999999999999999999999999999999999998776665541
Q ss_pred ----------------------------hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 83 ----------------------------SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 83 ----------------------------~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+.+..+|.-.. .---+|..+...| ++|+|++.+=..+.+.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~--aa~~lA~~~~~~g-~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVE--AALALADQLHLVG-RNEAALEHLLALLRRD 266 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 112233332211 2223777777777 8888888877766663
No 189
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.48 E-value=0.036 Score=32.73 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|.++..+|.++..+|++++|+..++++....|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 346777888888888888888888888777665
No 190
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.37 Score=43.96 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=72.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHH----------------------------------HH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAA----------------------------------KK 47 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~a----------------------------------rr 47 (235)
|+..++...+..++..+|+.+.+..-++-.+.++|+.++|+++. .+
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~ 227 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR 227 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 67888889999999999999999999999999999997655432 33
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 48 GLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 48 AL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
.++-||+|..+-+.+|.++...||.++|.+.+-...+..
T Consensus 228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467799999999999999999999999999988876653
No 191
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.36 E-value=0.042 Score=51.41 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=83.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|.++++.++..+.+..+|-++..+.+.|.++.....|..||.-+..|++||....-|+-..+.+-...|..+||-.-.+.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~ 190 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET 190 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccC
Q 026637 82 CSSTWSSC 89 (235)
Q Consensus 82 a~~~w~~~ 89 (235)
..++-|..
T Consensus 191 vL~LEP~~ 198 (536)
T KOG4648|consen 191 VLALEPKN 198 (536)
T ss_pred HHhhCccc
Confidence 99998773
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.36 E-value=0.079 Score=47.24 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=87.0
Q ss_pred CChhhHHHHHHhhcCCCC--CC----hhHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQ--QE----DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQH 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p--~~----~~~~g~~Af~L~e~-g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~ 68 (235)
+++.++....++|+...- ++ ...+..+|-.+++. |++++|.+.+++|+++-..+. ...-.++.++..
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 367788899999988632 22 35777888899998 999999999999999733322 344678999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCcchh--HH-HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSFMY--TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~l~--~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.|++++|+..+++....--..+ .+. .. .+--..+++|..| |+-.|...+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~-l~~~~~~~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENN-LLKYSAKEYFLKAILCHLAMG-DYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHC-TTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 9999999999998866543322 111 11 2334678999998 899999999886644
No 193
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.34 E-value=0.11 Score=48.90 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=74.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+...-...+++.+...|++|..+..+|..+..++.+.+|....+.|++..|.. ....-+||++..+|+++++-...++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHH
Confidence 667778888999999999999999999999999999999999999999998854 5778899999999999999988877
Q ss_pred chhh
Q 026637 82 CSST 85 (235)
Q Consensus 82 a~~~ 85 (235)
....
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 7543
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.21 E-value=0.17 Score=41.52 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=78.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD----CWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d----awA~halahvl~~~Gr~~egi~ 77 (235)
|+.++++..+.+++..-|..+-++++.|-++--+|+-++|..=..+||+|...- +.++...|.++-.+|+-+.+..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 789999999999999999999999999999999999999999999999987543 5788889999999999999999
Q ss_pred HHHHchhhh
Q 026637 78 FMEECSSTW 86 (235)
Q Consensus 78 ~l~~a~~~w 86 (235)
-++.+.+.-
T Consensus 137 DFe~AA~LG 145 (175)
T KOG4555|consen 137 DFEAAAQLG 145 (175)
T ss_pred hHHHHHHhC
Confidence 999988774
No 195
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.10 E-value=0.23 Score=37.24 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 42 EEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 42 e~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
.+..+++++-||+|..+.+.+|-++...|++++|++-+....+..+.... -.+-.. +.+|-+- | .-+....-|+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~l---l~~f~~l-g-~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRL---LDIFELL-G-PGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHH---HHHHHHH---TT-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHH---HHHHHHc-C-CCChHHHHHH
Confidence 45678999999999999999999999999999999999998776555322 112223 5556544 4 4456666666
Q ss_pred hhch
Q 026637 121 NHIW 124 (235)
Q Consensus 121 ~~i~ 124 (235)
+.+.
T Consensus 83 RkL~ 86 (90)
T PF14561_consen 83 RKLA 86 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 196
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.48 Score=40.96 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=82.7
Q ss_pred HHHHHhhcCCCCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 8 FDIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 8 l~~~~ral~~~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~ 81 (235)
...+++-...+|...| +.=.+|-...|.|++++|+..-+.++..-.+. +-+--.|+-|+..+|.+++|+..++.
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3444444445554443 33345568899999999999999999866555 45677899999999999999999987
Q ss_pred c-hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 C-SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a-~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
- .+.|.. +..+. .+..++..| +.++|+..|.+.+..
T Consensus 152 ~~~~~w~~----~~~el---rGDill~kg-~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 152 IKEESWAA----IVAEL---RGDILLAKG-DKQEARAAYEKALES 188 (207)
T ss_pred cccccHHH----HHHHH---hhhHHHHcC-chHHHHHHHHHHHHc
Confidence 6 344533 12344 678888998 899999999998876
No 197
>PRK10941 hypothetical protein; Provisional
Probab=94.93 E-value=0.14 Score=45.97 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
-.+.++=.++.+.+++++|.+..++.|.++|+|+.-+=..|-++...|.+..|+.-++.....-|.+|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 36677778999999999999999999999999999999999999999999999999999999888876
No 198
>PRK10941 hypothetical protein; Provisional
Probab=94.66 E-value=0.15 Score=45.81 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=62.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G 70 (235)
++.+.|+.++++.+...|++||-.-=.|+.+.+.|.+..|..=.+.-++.+|+|+.+.--...+..+..
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999999999999999999999999988776666655543
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.64 E-value=0.054 Score=34.66 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
|.++..+|.++..+|++++|++.+++.....|+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 46788999999999999999999999999998854
No 200
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.64 E-value=0.069 Score=32.82 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~ 52 (235)
++..+|-++...|+|++|++..+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35677778888888888888888865544
No 201
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.55 E-value=0.43 Score=42.71 Aligned_cols=119 Identities=10% Similarity=-0.040 Sum_probs=59.4
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e-~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.+.+|..+.+|....+..+.++--.|..-.. .++...|.+++++++..-|++..-+-.-..-+...|+.+.+...++++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3456666666664333333333322222112 235555666666666666666666666666666666666666666666
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...-+.... ..-+|=-+.-+-..-| +.+.+..++++...-
T Consensus 97 i~~l~~~~~--~~~iw~~~i~fE~~~G-dl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 97 ISSLPKEKQ--SKKIWKKFIEFESKYG-DLESVRKVEKRAEEL 136 (280)
T ss_dssp CCTSSCHHH--CHHHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHhcCchhH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 554322110 1123433444445555 666666666555544
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.53 E-value=0.09 Score=31.28 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|.++..+|.++..+|++++|+..+++++...|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356777888888888888888888888777654
No 203
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.12 E-value=0.2 Score=44.40 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
.|.-.|..+--.|-.+-|.-=+.++|+++|+-|.+..-+|-.+...|+++.+.+.+....+..|..+ ..|.+--+++
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lNRgi~~ 143 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIAL 143 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhccceee
Confidence 4444444444455566677888999999999999999999999999999999999999999998865 5676644555
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+| . |+|.-|.+=+-+....
T Consensus 144 YY--~-gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 144 YY--G-GRYKLAQDDLLAFYQD 162 (297)
T ss_pred ee--c-CchHhhHHHHHHHHhc
Confidence 55 3 4999888877666655
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.74 Score=41.92 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=87.0
Q ss_pred CChhhHHHHHHhhcCCC-CCChhHHHHHHHHHHHhCCHHHHHHHHHH----HHhhC--CCCHHHHHHHHHHHHHcCCHHH
Q 026637 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKIN--KHDCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~~~~g~~Af~L~e~g~~~~Ae~~arr----AL~L~--P~dawA~halahvl~~~Gr~~e 74 (235)
|.+.-.++...+++..+ |.+|....-++-+-++-|+...|+..+++ +=.|+ -+..-.+-+.+-++.-+.++.+
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 34444566677777766 67888888888888899999888888883 22232 2334566778888888889999
Q ss_pred HHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+.++..+..++.+ ..-| ..||+.+-.| +.-.|++..+..+..
T Consensus 271 a~r~~~~i~~~D~~~~---~a~N--nKALcllYlg-~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNA---VANN--NKALCLLYLG-KLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhccccCCCch---hhhc--hHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 9999888888887754 2334 3888888887 888888888776655
No 205
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.05 E-value=0.14 Score=34.83 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL 62 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hal 62 (235)
.+..+|.+.-..|+|++|....++.|+++|++..|.--.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 356789999999999999999999999999998876433
No 206
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.98 E-value=7.1 Score=38.73 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch
Q 026637 21 EDFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM 93 (235)
Q Consensus 21 ~~~~~g~~Af~L-~e~g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l 93 (235)
+..+.--+|-+| +|+..+++||....|++.++.++. .+.+-++.++..++... +...+++.+......+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~--- 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG--- 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC---
Confidence 445666666654 589999999999999999986532 34567789999999888 9999999988876633
Q ss_pred hHHHHHHHHHH----HHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh-cCcccccccchHHHHHHH
Q 026637 94 YTHNWWHVALC----YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RGELDVFGNRLKVLADCV 168 (235)
Q Consensus 94 ~~H~~WHlAL~----~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~rw~~la~~~ 168 (235)
..+..|+.-+. ++..+ ++..|++.++.-+.... ..+ .....+=++-+-.-+.+ .|.. .+..+.+....
T Consensus 134 ~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~-~~~--d~~~~v~~~l~~~~l~l~~~~~---~d~~~~l~~~~ 206 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLAN-QRG--DPAVFVLASLSEALLHLRRGSP---DDVLELLQRAI 206 (608)
T ss_pred chhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhh-hcC--CHHHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHH
Confidence 12333333322 22345 89999999977666531 122 22222222222222333 2332 34444444432
Q ss_pred Hhhh---------cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 026637 169 ADQA---------NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSK 210 (235)
Q Consensus 169 ~~~~---------~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 210 (235)
.... ......|.-+.-+.+....|+...++..|..++.....
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2111 12344566677788888999988889989998888754
No 207
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.96 E-value=0.023 Score=52.67 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=80.3
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|.++.+.+...++++++|....+|.-.+-++.+.+....|++=+..|+++||+.+-.+-..+.+.-.+|.++++...++.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhc
Q 026637 82 CSSTWS 87 (235)
Q Consensus 82 a~~~w~ 87 (235)
+..+.-
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 866543
No 208
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.82 E-value=0.14 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
++..+|.++.+.|++++|.+..++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45556666677777777777777777777663
No 209
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.75 E-value=0.096 Score=29.99 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 57 WSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 57 wA~halahvl~~~Gr~~egi~~l~ 80 (235)
++...+|.++..+|++++|.+.++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 445555555555555555555443
No 210
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.68 E-value=0.16 Score=40.79 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDC----WSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-------L~P~da----wA~halahvl~~~Gr~~egi~~l~~a 82 (235)
|.+.|..++-++...|+|+++...+.+||- |+.+.. -++.+.+.+++.+||.+|++..++.+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 567888889999999999999999999984 555543 35566666667777777776666554
No 211
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.19 Score=45.24 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
..+.++=-.+.++++++.|...+.+.+.+||+|+.-+-..|++|...|...-++.-++...+.-|+++
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 34555556889999999999999999999999999999999999999999999999999888888765
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.45 E-value=2.9 Score=39.45 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=98.6
Q ss_pred CChhhHHHHHHhhcC-CCCCChhHHHHHHHHHHH---------hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 2 GRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLE---------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 2 G~~~~al~~~~ral~-~~p~~~~~~g~~Af~L~e---------~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
|+.++|++.+..++. ..+.++..+|+.|=++-. ...+++|+..+++|.+++| |-|.=-+++..+...|.
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGH 274 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCC
Confidence 899999999999554 677899999999876543 2358889999999999995 66777788888888887
Q ss_pred HHHHHHHHHHch--------hhhccCCcchhHHHHHHHHHHH---HhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhH
Q 026637 72 FKEAVQFMEECS--------STWSSCSSFMYTHNWWHVALCY---LEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLN 140 (235)
Q Consensus 72 ~~egi~~l~~a~--------~~w~~~~~~l~~H~~WHlAL~~---le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~d 140 (235)
..+...-+++.. +.+...+ .-.+|-.|-+. +-.| ++++|.+.+.+.+.. +.+.=.....+.
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~----~~dYWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l---~~~~W~l~St~~ 346 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEK----MQDYWDVATLLEASVLAG-DYEKAIQAAEKAFKL---KPPAWELESTLE 346 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccc----cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhc---CCcchhHHHHHH
Confidence 655543333322 1222212 23677766544 4466 899999999998866 332222334566
Q ss_pred HHHHHHHHHhcCc
Q 026637 141 ALGLLLRVYVRGE 153 (235)
Q Consensus 141 a~sLL~Rl~l~G~ 153 (235)
-.-|+=++.-...
T Consensus 347 ni~Li~~~~~~~~ 359 (374)
T PF13281_consen 347 NIKLIRHFRKRPE 359 (374)
T ss_pred HHHHHHHHhcCCC
Confidence 6777766665444
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.23 Score=45.08 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=75.5
Q ss_pred CChhhHHHHHHhhcCCC------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 2 G~~~~al~~~~ral~~~------p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~eg 75 (235)
||.+.|-..++++-... ...-.++-..+|++.-.++|..|-....+.+..+|.|+.+..+.|.++.+.|+..+|
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 77777777777554321 234578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhhhcc
Q 026637 76 VQFMEECSSTWSS 88 (235)
Q Consensus 76 i~~l~~a~~~w~~ 88 (235)
+.-|++..+.-|.
T Consensus 306 iK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 306 LKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHhccCCc
Confidence 9999999999887
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.23 E-value=0.18 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~ 52 (235)
.++.+|..+..+|++++|+...++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 45566667777777777777777766653
No 215
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.15 E-value=0.11 Score=46.08 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=54.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
+..+.+.|+.+.|.++..+||++.|+..-.+..++...+..|+++.+.+-++++.+..|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456788899999999999999999999999999999999999999999999999988875
No 216
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=1.2 Score=40.34 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 16 ~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
...|.-|..+.=.|.+...+|+|++|+.+-+.||.-.|+||..+.++-..-.++|...+..+-.......
T Consensus 201 ~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 201 EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3356667777778889999999999999999999999999999999999999999998887766555444
No 217
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.71 E-value=0.89 Score=34.04 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d--awA~halahvl~~~Gr~~egi~~l~ 80 (235)
-...+++.+..+|+|..+..-+|-.+...|++++|.+..-+.+..+|+. .-+--.+--++...|.-+.-+.-++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566788888999999999999999999999999999999999999877 7788888889988888655444433
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.70 E-value=0.89 Score=43.04 Aligned_cols=184 Identities=14% Similarity=0.046 Sum_probs=116.8
Q ss_pred CCChhhHHHHHHhhcCC--CCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----------HHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--NQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------WSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----------wA~halah 64 (235)
||-+++++.++++|+.. +-+|+ .+.--++-......++++|.-..++|++|-.+-. -++.-++.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 35577888888888874 33444 3445555567778899999999999999865432 45667888
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccC-CcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHH
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSC-SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALG 143 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~-~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~s 143 (235)
.+-++|+..+|.+..+++...--.. +..++..----+|..|-++| +.|.|..-|+.+...-..-.+.+.-...+|.++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g-d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG-DLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999999986542211 11222333334888999998 999999999998876422122222222244443
Q ss_pred HHH---HHHhcCcc---cccccchHHHHHHHHhhhcchhcchhhHHHHHHHhc
Q 026637 144 LLL---RVYVRGEL---DVFGNRLKVLADCVADQANWYLECHLDLLILWALAN 190 (235)
Q Consensus 144 LL~---Rl~l~G~~---~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ 190 (235)
=-| |++=.|.. ..+-.|..+|+..... .+. -..+|.-++...
T Consensus 294 kc~~~~r~~~k~~~Crale~n~r~levA~~IG~---K~~--vlK~hcrla~iY 341 (518)
T KOG1941|consen 294 KCLETLRLQNKICNCRALEFNTRLLEVASSIGA---KLS--VLKLHCRLASIY 341 (518)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHhhh---hHH--HHHHHHHHHHHH
Confidence 332 44444332 1345677777665543 222 346777666654
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.69 E-value=2.1 Score=38.32 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=67.7
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCH
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~-~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~ 112 (235)
.++..++|..++.+|+.-++-....+-+.|..-+. .++.+-|...++......+.. .-+|++...+++..+ +.
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~~~Y~~~l~~~~-d~ 86 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFWLEYLDFLIKLN-DI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT--H
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhC-cH
Confidence 33449999999999997666667777777877555 466666999999999999885 367889999999998 89
Q ss_pred HHHHHHHHhhchh
Q 026637 113 RKVLEIYDNHIWK 125 (235)
Q Consensus 113 deAl~~yd~~i~~ 125 (235)
+.|..+|++.|..
T Consensus 87 ~~aR~lfer~i~~ 99 (280)
T PF05843_consen 87 NNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 220
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.55 E-value=3.1 Score=33.61 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=62.4
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch--hHHH
Q 026637 32 LLELGQMSDAEEAAKKGLKINKH------------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM--YTHN 97 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~------------dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l--~~H~ 97 (235)
..+.|.|++|.+.+|+|++.... |+-.+..|+-++-..||++|++.-.+.+.....+-...- .+ -
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG-k 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG-K 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH-H
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc-h
Confidence 34578999999999999987655 456677788889999999999999888876554422110 01 1
Q ss_pred HH-----HHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 98 WW-----HVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 98 ~W-----HlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
.| .-|+++-..| +.++|+.-|.....
T Consensus 98 lWIaaVfsra~Al~~~G-r~~eA~~~fr~agE 128 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLG-RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 23 3556666787 99999999976543
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.54 E-value=5.8 Score=38.03 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=42.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH--hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE--LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e--~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.+.++.-++--+. ...--.+|..+.-++. .|.++.|...+++|-+..|.-+||.-++-......|+.++++..+
T Consensus 134 G~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 134 GDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred CchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 445555544443321 1122345555554433 456666666666666666666666666666666666666666655
Q ss_pred HH
Q 026637 80 EE 81 (235)
Q Consensus 80 ~~ 81 (235)
+.
T Consensus 212 d~ 213 (531)
T COG3898 212 DA 213 (531)
T ss_pred HH
Confidence 54
No 222
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=3.7 Score=37.25 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=101.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--FKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr--~~egi~~l 79 (235)
|+++++++...+ .+.=.+..+--+++....++|-|+...++...++-+-.-.+-+-++|-.-+|- ..++.-.+
T Consensus 122 ~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyif 196 (299)
T KOG3081|consen 122 GDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIF 196 (299)
T ss_pred CChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445555555444 12223444445677888899999999999999988877777778888877764 45666666
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
++-....+..| ..-| +.|.+++.+| +|+||..+....+... .+ .+..++|-+-+ -.+.|.+.+|.+
T Consensus 197 eE~s~k~~~T~---~lln--G~Av~~l~~~-~~eeAe~lL~eaL~kd--~~---dpetL~Nliv~---a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 197 EELSEKTPPTP---LLLN--GQAVCHLQLG-RYEEAESLLEEALDKD--AK---DPETLANLIVL---ALHLGKDAEVTE 262 (299)
T ss_pred HHHhcccCCCh---HHHc--cHHHHHHHhc-CHHHHHHHHHHHHhcc--CC---CHHHHHHHHHH---HHHhCCChHHHH
Confidence 66555443323 2233 6999999998 9999999999999874 22 35556664433 235677755555
Q ss_pred chHHHHHHHHhhhcchhcchhhHH
Q 026637 160 RLKVLADCVADQANWYLECHLDLL 183 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H 183 (235)
|--. .. +...+..+|++=|
T Consensus 263 r~l~--QL---k~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 263 RNLS--QL---KLSHPEHPFVKHL 281 (299)
T ss_pred HHHH--HH---HhcCCcchHHHHH
Confidence 4321 11 2334555566543
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=0.98 Score=41.86 Aligned_cols=117 Identities=15% Similarity=0.024 Sum_probs=83.7
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHH------------------------------HHhhCC
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKK------------------------------GLKINK 53 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arr------------------------------AL~L~P 53 (235)
+..+-++.++.--..|.+......+|-+|-..+.+..|.++... -++--|
T Consensus 60 f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 60 FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 34555666666666676666666666666666666665544322 223345
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 54 --HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 54 --~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+++..+.+.|-+++..|++++++.-+..+..-..-.| . ...++||+|+..| +|+.|++....-|.++
T Consensus 140 ~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-l----lAYniALaHy~~~-qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 140 SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-L----LAYNLALAHYSSR-QYASALKHISEIIERG 208 (459)
T ss_pred CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-h----hHHHHHHHHHhhh-hHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999998877643322 2 3345999999998 9999999888777765
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.91 E-value=0.12 Score=49.82 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=84.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
.+++.+.+...+|+.++|+.+.+.+..|++....+.|..|..=+-+|++++|...-+++..|.+....|++.++...++.
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCc
Q 026637 82 CSSTWSSCSS 91 (235)
Q Consensus 82 a~~~w~~~~~ 91 (235)
+...-|+.+.
T Consensus 98 ~~~l~Pnd~~ 107 (476)
T KOG0376|consen 98 VKKLAPNDPD 107 (476)
T ss_pred hhhcCcCcHH
Confidence 9999988763
No 225
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.89 E-value=0.24 Score=28.28 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHH
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKK 47 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arr 47 (235)
|.++.++|.++..+|++++|++..++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 46788999999999999999998764
No 226
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.81 E-value=0.69 Score=43.55 Aligned_cols=92 Identities=8% Similarity=-0.035 Sum_probs=74.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~ 108 (235)
|.-+-.+|.|+||+..+-+++++.|.++--+.+.+.+|..+.+|.-|..-.+.+..+...+ ..-+---+-+..++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-----~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-----VKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-----HHHHHHHHHHHHHH
Confidence 3445568999999999999999999999999999999999999999888888887775442 23333455566677
Q ss_pred CCCHHHHHHHHHhhchhh
Q 026637 109 HSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 109 G~~~deAl~~yd~~i~~~ 126 (235)
| ...||-+=|+..++.+
T Consensus 179 g-~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 179 G-NNMEAKKDCETVLALE 195 (536)
T ss_pred h-hHHHHHHhHHHHHhhC
Confidence 7 7888888888888763
No 227
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.48 E-value=1.5 Score=36.63 Aligned_cols=55 Identities=13% Similarity=-0.018 Sum_probs=43.4
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
..++.+.++.+...--.|.|+.+.....-+..+..+|++.+|+..+++....-|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 4558888888888878888888888888888888888888888888887655544
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.31 E-value=1.5 Score=39.27 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA---~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+..-|......|+|++|...+++.....|.++|+ +-.++-+++..|++++|+..+++.++..|..|+.-..-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 44677778888899999999999999999999999875 566789999999999999999999999999887522222
Q ss_pred HHHHHHHHHhCCC-------CHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHS-------PMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~-------~~deAl~~yd~~i~~~ 126 (235)
=.+|.++..=+ ...+|..-+.+.|.+-
T Consensus 113 --lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 113 --LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred --HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 25666543110 2345666666777663
No 229
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.23 E-value=0.54 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 57 wA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
.+++.+|.++...|++++++..++++....|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777777777777777777777776655
No 230
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.19 E-value=0.36 Score=42.96 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=52.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da 56 (235)
||.+.+.....|++..-|+......-+++..+..|+++.|.+..++-|+++|.|-
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 7889999999999999999999999999999999999999999999999999985
No 231
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.79 Score=41.00 Aligned_cols=85 Identities=7% Similarity=-0.000 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHH
Q 026637 36 GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV 115 (235)
Q Consensus 36 g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deA 115 (235)
.+|+.|+..+-||+.+||+.+-=..+.+..+....+++-...-.+++....|+ ....|+. ++.+.++.. .|+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~f--lg~~~l~s~-~~~ea 97 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYF--LGQWLLQSK-GYDEA 97 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHH--HHHHHHhhc-cccHH
Confidence 36899999999999999999988888888888899999999998888888755 4578886 777777776 69999
Q ss_pred HHHHHhhchhh
Q 026637 116 LEIYDNHIWKE 126 (235)
Q Consensus 116 l~~yd~~i~~~ 126 (235)
+..+.++..-.
T Consensus 98 I~~Lqra~sl~ 108 (284)
T KOG4642|consen 98 IKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHH
Confidence 99998885543
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.96 E-value=0.51 Score=28.85 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 58 SQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 58 A~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
++..+|.++..+|++++|+.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777743
No 233
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.86 E-value=1.9 Score=37.84 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=71.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~daw-----A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
|--+-.+|+|.+|..-+.+||++.|--+. -+-+.|-++..++..+.+|.-..+++.+||... ..-. --|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~--RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALE--RRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHH--HHHH
Confidence 44466799999999999999999998764 455678899999999999999999999998854 1222 2455
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|-..- .||+|++=|.+.+..
T Consensus 177 ayek~e-k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKME-KYEEALEDYKKILES 197 (271)
T ss_pred HHHhhh-hHHHHHHHHHHHHHh
Confidence 664553 899999999776544
No 234
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.79 E-value=0.56 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 57 wA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
.+++++|.++..+|++++|+.+++++.....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3566667777777777777777666655543
No 235
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.75 E-value=2.5 Score=41.33 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=98.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++...|+...+|||..+..+.-+.--++-.-+.+....-|..+..||+.+-|.--.-+.-..++-+|.|+..-+...+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35678999999999987666666656666677788999999999999999999999999999999999999999999999
Q ss_pred chhhhccCC-----------------------cchhHH----HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCS-----------------------SFMYTH----NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~-----------------------~~l~~H----~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+.--|..+ .|..+| +|--+|-|-...| ...-+...|.++|..
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG-NVALARSVYERAIEF 236 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH
Confidence 976444421 122334 5666777877776 888888888888876
No 236
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.66 E-value=0.44 Score=44.23 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=57.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
|+.+.+...++-|+.+.|+++.++--+|-..++.++.-+|-..+-+||.+.|.+..|+.+.+-
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 788899999999999999999999999999999999999999999999999999999887664
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.44 E-value=0.47 Score=27.46 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 58 SQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 58 A~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|+..+|.++...|++++|+..+++.....|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
No 238
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.41 E-value=0.5 Score=25.46 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 58 SQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 58 A~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
++..+|.++...|++++++..++++....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 44556666666666666666666655544
No 239
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=2.6 Score=39.96 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH--------------hhCCCCH----------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL--------------KINKHDC---------- 56 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL--------------~L~P~da---------- 56 (235)
+|+.++++...+-+...+..++.+--++|...--.|.|.+|+.++.+|- .+|-.--
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 4777777777777777655556666667777777788888887776641 1221111
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 57 --WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 57 --wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.-.-.+|-|++|+-.+.|||+.+.+.....|..- ...+ .+||+|..+. -||-+-++.+..++.
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~---alNV--y~ALCyyKlD-Yydvsqevl~vYL~q 214 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI---ALNV--YMALCYYKLD-YYDVSQEVLKVYLRQ 214 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh---hhHH--HHHHHHHhcc-hhhhHHHHHHHHHHh
Confidence 1223567777888888888888877777766532 2222 3788887774 666666666655555
No 240
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=89.88 E-value=0.85 Score=46.17 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=86.3
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHH
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~de 114 (235)
+++|.++-+..++++++||--...+..+|-+....++...++..+..+...-|+ + .--|-+++-.|+-.| +--+
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~----~eaWnNls~ayi~~~-~k~r 571 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-N----AEAWNNLSTAYIRLK-KKKR 571 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-c----hhhhhhhhHHHHHHh-hhHH
Confidence 689999999999999999999999999999999999999999999999999877 3 223445999999988 8899
Q ss_pred HHHHHHhhchhhhcCCC---------CCchHhHhHHHHHHHHHHhc
Q 026637 115 VLEIYDNHIWKELEKPD---------AVHPEVYLNALGLLLRVYVR 151 (235)
Q Consensus 115 Al~~yd~~i~~~~~~~~---------~~~~~~~~da~sLL~Rl~l~ 151 (235)
|...+.+++.=.- ++. ++.....-||.+..=|+...
T Consensus 572 a~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 572 AFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9998888775421 110 01122235788888787654
No 241
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.75 E-value=2.6 Score=40.64 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=94.3
Q ss_pred CCChhhHHHHHHhhcCCCC---C---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ---Q---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p---~---~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~------dawA~halahvl~~ 68 (235)
+|+++++...-+.-|.... + .-.+++++|-++.-.|+++-|.+.+++++.|.-. .+..-..++.+|..
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 4677777666555555422 2 3368999999999999999999999988765422 35667789999999
Q ss_pred cCCHHHHHHHHHHchh----hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhc
Q 026637 69 DCCFKEAVQFMEECSS----TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELE 128 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~----~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~ 128 (235)
...++.||.+..+... .....+ ...-.|-++.++-..| ..++|+.....+++..++
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriG---e~RacwSLgna~~alg-~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIG---ELRACWSLGNAFNALG-EHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999888743 333322 3567899999999998 799999999998887654
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.55 E-value=2.4 Score=33.35 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=63.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCC--------CCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 31 SLLELGQMSDAEEAAKKGLKINK--------HDCWS--------------QHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L~P--------~dawA--------------~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
.....|+..++.+..++|+++=. ...|. ...++..+...|++++++..+++.....|-
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~ 94 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY 94 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Confidence 44567788888888888888652 22443 445667788999999999999999999877
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 89 ~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+. ..+=.+-.++...| ++.+|++.|++....
T Consensus 95 ~E-----~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 95 DE-----EAYRLLMRALAAQG-RRAEALRVYERYRRR 125 (146)
T ss_dssp -H-----HHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CH-----HHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 43 33334666777888 999999999876554
No 243
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=4.6 Score=38.32 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 026637 60 HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (235)
Q Consensus 60 halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y 119 (235)
-.+||+++..|++++|+..++-.... .++| +-.|-.+|-+++-+| .|.+|..+-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~----~el~vnLAcc~FyLg-~Y~eA~~~~ 114 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNK-DDAP----AELGVNLACCKFYLG-QYIEAKSIA 114 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcc-CCCC----cccchhHHHHHHHHH-HHHHHHHHH
Confidence 34455555555555555554444331 1112 223333555554454 455554443
No 244
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.34 E-value=6.4 Score=32.88 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=74.7
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+.+.+...+...--+.|..+.+.-.-|..+...|++++|+.+.|...+-.|..+.+-.-++.+++.+|+++
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~--------- 95 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS--------- 95 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH---------
Confidence 44455555554444688999999999999999999999999999999999999999999999998887754
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|. . .|.--++.+ .-+.++.+.+.....
T Consensus 96 ---Wr---------~---~A~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 96 ---WR---------R---YADEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred ---HH---------H---HHHHHHhcC-CChHHHHHHHHHHHh
Confidence 31 1 344455655 457777777666655
No 245
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.26 E-value=1 Score=29.46 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHH
Q 026637 100 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (235)
Q Consensus 100 HlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (235)
|+|-.|++.| +++.|.++.+..+... .....-.|-+||=+
T Consensus 4 dLA~ayie~G-d~e~Ar~lL~evl~~~-------~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMG-DLEGARELLEEVIEEG-------DEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcC-ChHHHHHHHHHHHHcC-------CHHHHHHHHHHHhc
Confidence 7999999998 9999999999988531 23345667777644
No 246
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.01 E-value=13 Score=38.63 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=68.7
Q ss_pred CChhhHHHHHHhhcCCCCC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ---------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQ 67 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~---------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-----A~halahvl~ 67 (235)
.+..++-..+.++....+. ...+....|-+....|+.++|++.+++++..=|.+.+ +.-+++.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 3555666666666555432 3467788888999999999999999999999998876 4556778899
Q ss_pred HcCCHHHHHHHHHHchhhhcc
Q 026637 68 HDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~ 88 (235)
-+|+.+++...+.++...-..
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHH
Confidence 999999999999999877433
No 247
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.54 E-value=6.8 Score=38.47 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=86.2
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+...|+..+..|+-.-|-+-.+.++.-+-+ ..+++|+...++++-|+-.|.|+.++-..|..-...|+.+.+.+.++=+
T Consensus 419 ~l~~ARkiLG~AIG~cPK~KlFk~YIelEl-qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 419 NLTGARKILGNAIGKCPKDKLFKGYIELEL-QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred ccHHHHHHHHHHhccCCchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345677777777777777777777776654 5678899999999999999999988888888888889999888888877
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...-.-+ |.--+|=-.=.|-++.| .++.|..+|.+.+.+
T Consensus 498 i~qp~ld---mpellwkaYIdFEi~~~-E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 498 ISQPALD---MPELLWKAYIDFEIEEG-EFEKARALYERLLDR 536 (677)
T ss_pred hcCcccc---cHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence 6542111 22234422334456677 899999999887776
No 248
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.00 E-value=9.2 Score=31.70 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=66.0
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHH
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~de 114 (235)
.++.++++.+-..-=-|.|+.+....--++++...|++.||+..+++-...=+..| .+--. +|.|+..+| |-
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p---~~kAL--~A~CL~al~---Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP---YGKAL--LALCLNAKG---DA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch---HHHHH--HHHHHHhcC---Ch
Confidence 88999999999988899999999999999999999999999999998877654433 22222 677777776 35
Q ss_pred HHHHHHhhchh
Q 026637 115 VLEIYDNHIWK 125 (235)
Q Consensus 115 Al~~yd~~i~~ 125 (235)
..+.|-..+-.
T Consensus 95 ~Wr~~A~~~le 105 (153)
T TIGR02561 95 EWHVHADEVLA 105 (153)
T ss_pred HHHHHHHHHHH
Confidence 67777666554
No 249
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.57 E-value=1.6 Score=39.31 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=60.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ 67 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~ 67 (235)
++.+.++.+++|.+.++|+++|-.-=-|+++.+.|.+.-|.+-....++..|+++.+---..+...
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999998776666554
No 250
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.14 E-value=9.7 Score=34.68 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=140.2
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK-EAVQFME 80 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~-egi~~l~ 80 (235)
+.+.+++..+-++..+|.+.-+....=.+|.+.+ ++.+=.+-..+-++-||.+-..+|-.-.+.++.|++. .-++|.+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 4678899999999999988877777777888877 7777788888999999999999999999999999998 8899999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCC-----c----hHhHhHHHHH----HHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV-----H----PEVYLNALGL----LLR 147 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~-----~----~~~~~da~sL----L~R 147 (235)
........ + .|.|-|--=+...-+ +++.-+...+..|.... ..++. + ....++.+.| -|-
T Consensus 138 ~~l~~DaK-N----YHaWshRqW~~r~F~-~~~~EL~y~~~Lle~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 138 LMLDDDAK-N----YHAWSHRQWVLRFFK-DYEDELAYADELLEEDI-RNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred HHHhcccc-c----hhhhHHHHHHHHHHh-hHHHHHHHHHHHHHHhh-hccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 99887666 4 688878655555666 69998988888776642 21110 0 0111222222 122
Q ss_pred HH---hcCcccccccchHHHHHHHHhhhcchhcchhhHHH----HHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHH
Q 026637 148 VY---VRGELDVFGNRLKVLADCVADQANWYLECHLDLLI----LWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQ 220 (235)
Q Consensus 148 l~---l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~----~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 220 (235)
++ +... -..-|.=|........+ .+.--++-- ++.-...+-+.....|++.+..-+.....+......
T Consensus 211 ~~~I~~vP~---NeSaWnYL~G~l~~d~g--l~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~ 285 (318)
T KOG0530|consen 211 KDKILLVPN---NESAWNYLKGLLELDSG--LSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELAR 285 (318)
T ss_pred HHHHHhCCC---CccHHHHHHHHHHhccC--CcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHH
Confidence 22 2222 25678888877764211 111111111 222223444566677777774444332222233666
Q ss_pred HHHHHHHhhh
Q 026637 221 TGVQVSSDIC 230 (235)
Q Consensus 221 ~~~~l~~~~~ 230 (235)
++..|++.+.
T Consensus 286 ~a~~ly~~La 295 (318)
T KOG0530|consen 286 KAVKLYEDLA 295 (318)
T ss_pred HHHHHHHHHh
Confidence 7888887765
No 251
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.08 E-value=0.51 Score=45.32 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=86.3
Q ss_pred CCChhhHHHHHHhhcCCCC------CChhHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhCCC
Q 026637 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQ--------------------MSDAEEAAKKGLKINKH 54 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p------~~~~~~g~~Af~L~e~g~--------------------~~~Ae~~arrAL~L~P~ 54 (235)
+|++++++.+..|-|.+.. ..+.++.++|.++.+.|+ +..|.+.+..-|++-..
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999888887532 356788888888877653 23344455555555444
Q ss_pred CH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC---cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 55 DC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 55 da------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~---~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.. -+.-+++..++..|+|+.+|.+=+...+.-...+ ..-+.|- +++-+|+.+| +++.|.+.|...+..
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s--NlgN~hiflg-~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS--NLGNCHIFLG-NFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc--ccchhhhhhc-ccHhHHHHHHHHHHH
Confidence 33 3566899999999999999999877755433322 1223443 3888999998 999999999876654
No 252
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.08 E-value=2.4 Score=31.51 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 33 LELGQMSDAEEAAKKGLKINKHDC---------WSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 33 ~e~g~~~~Ae~~arrAL~L~P~da---------wA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
...|+|.+|.+...+.+....... .+.-+++-++...|++++|+..++++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 357788888777777776554443 3444444555555555555555555433
No 253
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.84 E-value=19 Score=33.65 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHchh----hh-ccCCcchhHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH-DCWSQHA-LCHVLQHDCCFKEAVQFMEECSS----TW-SSCSSFMYTH 96 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-dawA~ha-lahvl~~~Gr~~egi~~l~~a~~----~w-~~~~~~l~~H 96 (235)
++..+.-.+.+.|.+.-|.+.++--++|+|. ||.+.-- +=+.-.+.++++-=+.+.++... .| ...|+| -
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~---a 181 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF---A 181 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH---H
Confidence 5566667899999999999999999999999 9876544 44455667777778888887644 22 234555 2
Q ss_pred HHHHHHHHHHhCCCCH---------------HHHHHHHHhhchh
Q 026637 97 NWWHVALCYLEGHSPM---------------RKVLEIYDNHIWK 125 (235)
Q Consensus 97 ~~WHlAL~~le~G~~~---------------deAl~~yd~~i~~ 125 (235)
+. .||+++..+ +. ++|-....++|..
T Consensus 182 ~S--~aLA~~~l~-~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 182 FS--IALAYFRLE-KEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HH--HHHHHHHhc-CccccccccccccccchhHHHHHHHHHHHH
Confidence 33 556665555 44 7788777777765
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=3 Score=39.00 Aligned_cols=84 Identities=19% Similarity=0.100 Sum_probs=69.2
Q ss_pred ChhhHHHHHHhhcCCC---CC-ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYN---QQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 3 ~~~~al~~~~ral~~~---p~-~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
++..|..+....|.-. |+ +.-.+.+.|-+....|.|..|+.=+.+|+.++|+..-|+..=|-+++...++++++.|
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNW 175 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4566777777777753 32 4467788888999999999999999999999999999999999999999999999999
Q ss_pred HHHchhhh
Q 026637 79 MEECSSTW 86 (235)
Q Consensus 79 l~~a~~~w 86 (235)
.++-....
T Consensus 176 ~ee~~~~d 183 (390)
T KOG0551|consen 176 CEEGLQID 183 (390)
T ss_pred Hhhhhhhh
Confidence 88764443
No 255
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.56 E-value=21 Score=33.39 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=64.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||..+++..+++.-.. ++.......|-.+-..|+|++|.+-+..|++...-.|-...+++.+++..|+.+.++..+.+
T Consensus 126 ~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4555556555553211 45566777788888999999999999999999999999999999999999999999988766
Q ss_pred c
Q 026637 82 C 82 (235)
Q Consensus 82 a 82 (235)
-
T Consensus 204 I 204 (459)
T KOG4340|consen 204 I 204 (459)
T ss_pred H
Confidence 5
No 256
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=83.75 E-value=4.7 Score=41.82 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=72.4
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
..+.+++..|.+...+-+.--||...|..--|.++...|+.+|+...++.-...-+++... .-+ +-.+|-++| +
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t--Lq~---l~~~y~d~~-~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT--LQF---LQNVYRDLG-K 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH--HHH---HHHHHHHHh-h
Confidence 5578899999999999999999999999999999999999999998887765555553211 122 445788887 9
Q ss_pred HHHHHHHHHhhchh
Q 026637 112 MRKVLEIYDNHIWK 125 (235)
Q Consensus 112 ~deAl~~yd~~i~~ 125 (235)
+|+|+..|.+.+..
T Consensus 93 ~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 93 LDEAVHLYERANQK 106 (932)
T ss_pred hhHHHHHHHHHHhh
Confidence 99999999998876
No 257
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.39 E-value=6.6 Score=32.54 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=71.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
++.+...+...=-+.|+.+.+.-+-+..+...|++++|....|+-.+-.|+.+.+-.-++.++..+|+++
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~---------- 95 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE---------- 95 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH----------
Confidence 3333333333333578888888888888999999999999999999999999999999999999888764
Q ss_pred hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 84 ~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
| |. .|.-.++.| +-.+++.+.+...
T Consensus 96 --W---------r~---~A~~~le~~-~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 --W---------HV---HADEVLARD-ADADAVALVRALL 120 (153)
T ss_pred --H---------HH---HHHHHHHhC-CCHhHHHHHHHHh
Confidence 4 22 445556766 5688888886544
No 258
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.29 E-value=8.2 Score=38.82 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=102.4
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 9 ~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da--wA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
..+.-.+...|.+|++|.+-+|-+--.|...+|...+++|+-+-|+.. -+.-.+|.++...|+..+|--.+..+...=
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 445667888999999999999999999999999999999999888753 467789999999999999988886665553
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 87 ~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
+.. +-|.--++-.+..+| +|-.-+--||.....+ ...-......-++.|-+-||+=
T Consensus 280 ~~~-----t~n~y~l~~i~aml~-~~N~S~~~ydha~k~~--p~f~q~~~q~~~~ISC~~~L~~ 335 (886)
T KOG4507|consen 280 DFF-----TSNYYTLGNIYAMLG-EYNHSVLCYDHALQAR--PGFEQAIKQRKHAISCQQKLEQ 335 (886)
T ss_pred ccc-----cccceeHHHHHHHHh-hhhhhhhhhhhhhccC--cchhHHHHHHHHHHHHHHHHHH
Confidence 322 223334788888887 8999999998766553 2211223445688888888874
No 259
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.01 E-value=16 Score=35.58 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=55.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh-------hcc------CCcchhHHHHHHHHHHHHhCCCCHHHHHH
Q 026637 51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST-------WSS------CSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (235)
Q Consensus 51 L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~-------w~~------~~~~l~~H~~WHlAL~~le~G~~~deAl~ 117 (235)
-.|+.+|-.-..+.+.+.++.+.+++..+..|... |-+ +++|+ +--|.|.++++.| +++|+..
T Consensus 74 ~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~---l~~i~a~sLIe~g-~f~EgR~ 149 (549)
T PF07079_consen 74 QFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFF---LDEIEAHSLIETG-RFSEGRA 149 (549)
T ss_pred hcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHH---HHHHHHHHHHhcC-CcchHHH
Confidence 46899999999999999999999999999887544 211 11121 2346899999998 9999999
Q ss_pred HHHhhchhh
Q 026637 118 IYDNHIWKE 126 (235)
Q Consensus 118 ~yd~~i~~~ 126 (235)
+..+.+..-
T Consensus 150 iLn~i~~~l 158 (549)
T PF07079_consen 150 ILNRIIERL 158 (549)
T ss_pred HHHHHHHHH
Confidence 998777654
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.81 E-value=14 Score=35.00 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=71.6
Q ss_pred ChhhHHHHHHhhcCC----CCCChhHHHHHHHHHHH---hCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHH----H--
Q 026637 3 RPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLE---LGQMSDAEEAAKK-GLKINKHDCWSQHALCHVLQ----H-- 68 (235)
Q Consensus 3 ~~~~al~~~~ral~~----~p~~~~~~g~~Af~L~e---~g~~~~Ae~~arr-AL~L~P~dawA~halahvl~----~-- 68 (235)
+++.|...++..-+. .++.+.+...+||+|-. .|+.++|...... -..-++.++..+--+|-++= .
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~ 235 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN 235 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC
Confidence 566777777765554 45788899999999999 9999999999999 45567778887777776642 1
Q ss_pred ---cCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCC
Q 026637 69 ---DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (235)
Q Consensus 69 ---~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G 109 (235)
....++|+.++.+.-+..++ . |..-++|..+.-.|
T Consensus 236 ~~d~~~ldkAi~~Y~kgFe~~~~---~---Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 236 FTDRESLDKAIEWYRKGFEIEPD---Y---YSGINAATLLMLAG 273 (374)
T ss_pred ccchHHHHHHHHHHHHHHcCCcc---c---cchHHHHHHHHHcC
Confidence 23477888888877666533 2 32223666665656
No 261
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.80 E-value=26 Score=34.57 Aligned_cols=141 Identities=12% Similarity=0.040 Sum_probs=99.1
Q ss_pred CCChhhHHHHHHhhcCC---CCC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCHHH--HHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY---NQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHDCWS--QHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~---~p~-------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L-~P~dawA--~halahvl~ 67 (235)
+||..+++..+..+..- .|. .+..|..+|.--.-.|.|+.||..++.|+.+ +..|-|| .-++|-+|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 47777777776666542 343 5577888888788899999999999999985 5566665 457899999
Q ss_pred HcCCHHHHHHHHHHchhhhcc--CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHH
Q 026637 68 HDCCFKEAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 145 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~--~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL 145 (235)
.+|+.++-...++.--+.+.. ++..+..-+..-.|++.+..+ ++.||.....+.+.- ++.+..+. +-++||+
T Consensus 416 ~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn-~lnEaK~~l~e~Lkm----anaed~~r-L~a~~Lv 489 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN-DLNEAKRFLRETLKM----ANAEDLNR-LTACSLV 489 (629)
T ss_pred HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh----cchhhHHH-HHHHHHH
Confidence 999999998888877665433 111222334556788888988 999999988777655 23333333 5666765
Q ss_pred HH
Q 026637 146 LR 147 (235)
Q Consensus 146 ~R 147 (235)
.=
T Consensus 490 LL 491 (629)
T KOG2300|consen 490 LL 491 (629)
T ss_pred HH
Confidence 43
No 262
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.70 E-value=14 Score=27.32 Aligned_cols=60 Identities=8% Similarity=-0.050 Sum_probs=42.8
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcc----hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSF----MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~----l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
...|++.++++.+.+..+.-....+. ....-.-++|..+...| ++++|+..+++.|....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 46789999988888875443332211 11233456888899998 99999999999998853
No 263
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.34 E-value=4.7 Score=40.45 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=80.6
Q ss_pred CChhhHHHHHHhhcCCCCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~-~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|++..+..+.++|+-.-|...+ -+-.+|-++...|-.-.|-...-++|.++-..|--+..+|.++....+.+.|+..++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 8889999999999999887654 467788888899988899999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
+++..-|.|+
T Consensus 701 ~a~~~~~~~~ 710 (886)
T KOG4507|consen 701 QALKLTTKCP 710 (886)
T ss_pred HHHhcCCCCh
Confidence 9999998876
No 264
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.99 E-value=15 Score=40.32 Aligned_cols=177 Identities=15% Similarity=0.262 Sum_probs=91.4
Q ss_pred hHHHHHHhhcCCCCCChhHH-HHHHHHHHHhCCHHHHHHHHHHHHh-hCCCC----------------------------
Q 026637 6 LCFDIIHQVLPYNQQEDFIF-GILAFSLLELGQMSDAEEAAKKGLK-INKHD---------------------------- 55 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~-g~~Af~L~e~g~~~~Ae~~arrAL~-L~P~d---------------------------- 55 (235)
+.-+-++|.+...|+.+..+ .++||-+ |.++.++|.+.|+|||. +|++-
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 33444555555566555322 3333433 55666666666666664 44432
Q ss_pred --------HH-HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 56 --------CW-SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 56 --------aw-A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|+ .+-.|+-+|+..+.+++|.+.|+.......+. .-+|--++-++|... +-++|.++..+++.--
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~n-e~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQN-EAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhccc-HHHHHHHHHHHHHhhc
Confidence 22 23345666677777777777777766665532 234444666666654 5566677766666431
Q ss_pred hcCCCCCchHhHhHHHHHHHHHHhc-Ccccccc-cchHHHHHHHHhhhc-chhcchhhHHHHHHHhcCCCchHHHHHHHH
Q 026637 127 LEKPDAVHPEVYLNALGLLLRVYVR-GELDVFG-NRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKG 203 (235)
Q Consensus 127 ~~~~~~~~~~~~~da~sLL~Rl~l~-G~~~~~g-~rw~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~ 203 (235)
+-+.=++-.|=.--|++. |-. +.| .-|+.+......|.+ |.. ..|+ =.+.|+.+-++.|.++
T Consensus 1595 -------Pk~eHv~~IskfAqLEFk~GDa-eRGRtlfEgll~ayPKRtDlW~V--Yid~-----eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1595 -------PKQEHVEFISKFAQLEFKYGDA-ERGRTLFEGLLSAYPKRTDLWSV--YIDM-----EIKHGDIKYVRDLFER 1659 (1710)
T ss_pred -------chhhhHHHHHHHHHHHhhcCCc-hhhHHHHHHHHhhCccchhHHHH--HHHH-----HHccCCHHHHHHHHHH
Confidence 122335666666667764 432 111 125544433332322 222 2222 2366676777777665
Q ss_pred H
Q 026637 204 L 204 (235)
Q Consensus 204 ~ 204 (235)
+
T Consensus 1660 v 1660 (1710)
T KOG1070|consen 1660 V 1660 (1710)
T ss_pred H
Confidence 4
No 265
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.85 E-value=15 Score=40.33 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
|-..+++-+.-..+..-++-+++-.|..+++-.+|..+-.|||.--|. ...-.--.|-..+..|+.+.|...++....
T Consensus 1549 A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1549 ADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 333344444433445556667777777777777788888888887777 555666667777788888888888888877
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+|.- .-.|--+...-+..| +.+-+..+|++.|...
T Consensus 1629 ayPKR-----tDlW~VYid~eik~~-~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1629 AYPKR-----TDLWSVYIDMEIKHG-DIKYVRDLFERVIELK 1664 (1710)
T ss_pred hCccc-----hhHHHHHHHHHHccC-CHHHHHHHHHHHHhcC
Confidence 77662 345544455555565 6778888888877764
No 266
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.44 E-value=4.3 Score=40.26 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=73.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
..+++....+++...|+..+.+.+.|-+++..+ +.--|..=.-.|+++||-.--|+..|+.++.+.++..||+.+..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 345677778888888999999999999998765 55558888899999999999999999999999999999999988
Q ss_pred Hchhhhcc
Q 026637 81 ECSSTWSS 88 (235)
Q Consensus 81 ~a~~~w~~ 88 (235)
...-..|.
T Consensus 470 alq~~~Pt 477 (758)
T KOG1310|consen 470 ALQMSFPT 477 (758)
T ss_pred HHhhcCch
Confidence 88777765
No 267
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.02 E-value=7.2 Score=36.64 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcCC--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026637 5 DLCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (235)
Q Consensus 5 ~~al~~~~ral~~--~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl 66 (235)
+..+..++....- -.+|..+|+..|-.|...|+.++|.+.++||++|.+|.+...+-..+.-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3455566655554 3567889999999999999999999999999999999998776655443
No 268
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.09 E-value=5.7 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCHHHHHHH--HHHHHhhCCCC
Q 026637 27 ILAFSLLELGQMSDAEEA--AKKGLKINKHD 55 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~--arrAL~L~P~d 55 (235)
-+|..+-..|+|++|+.. .+-+..++|.|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 346677788888888888 55777777765
No 269
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=79.19 E-value=3.9 Score=39.62 Aligned_cols=110 Identities=7% Similarity=-0.072 Sum_probs=81.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCC
Q 026637 30 FSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (235)
Q Consensus 30 f~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G 109 (235)
-.....+.|+.|...+-+|++++||.+.-.-..+-++...+.+-+|+.-..++++..|... .+.+ --|.+++.++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~---K~Y~--rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI---KAYV--RRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh---heee--eccHHHHhHH
Confidence 3445678999999999999999999998888888999999999999999999999987743 2222 2667777776
Q ss_pred CCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 110 SPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 110 ~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
.+-+|+..|.....-. ..-+...-.+|-+..+=+.
T Consensus 87 -~~~~A~~~l~~~~~l~---Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 87 -EFKKALLDLEKVKKLA---PNDPDATRKIDECNKIVSE 121 (476)
T ss_pred -HHHHHHHHHHHhhhcC---cCcHHHHHHHHHHHHHHHH
Confidence 8999999887654431 1112233345666655444
No 270
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.15 E-value=31 Score=35.15 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=82.8
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
..++++.|+||.-.-+--.=-.+.| +.+.|-..-+....||=|.++|... -.---.+...+|.+|+..-++...+.
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~F-v~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKF-VESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHH-HHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCc
Confidence 3455666666642211100011222 2344555668889999999998873 44455677888888887777665321
Q ss_pred --------------h----------cc-----------------CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 86 --------------W----------SS-----------------CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 86 --------------w----------~~-----------------~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
| |+ .+. -.+++|--||.+|+..| ++|+|..+|.+.|.
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD-q~g~Lw~SLAdYYIr~g-~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD-QLGFLWCSLADYYIRSG-LFEKARDVYEEAIQ 276 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH-HHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHH
Confidence 1 00 011 13567777999999998 99999999999999
Q ss_pred hhhcCCCCCchHhHhHHHH------HHHHHHh
Q 026637 125 KELEKPDAVHPEVYLNALG------LLLRVYV 150 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~da~s------LL~Rl~l 150 (235)
.-. + ......+-|+-+ +-.+|++
T Consensus 277 ~v~--t-vrDFt~ifd~Ya~FEE~~~~~~me~ 305 (835)
T KOG2047|consen 277 TVM--T-VRDFTQIFDAYAQFEESCVAAKMEL 305 (835)
T ss_pred hhe--e-hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 852 2 122334556654 3466775
No 271
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.26 E-value=0.89 Score=42.45 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=52.1
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
-.|.++.|++.+-+|+.+||..+.-+...+.|+...++...+|+-+..+..+.++.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 36789999999999999999999999999999999999999999999998887763
No 272
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.16 E-value=21 Score=38.24 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=94.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~ 108 (235)
|-.-.+++-|+||.+.+++- .+| .-++-...+.-|..+.|.+|.+++.. | -.|-.+|-+.+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-~~n------~~A~~VLie~i~~ldRA~efAe~~n~-----p-----~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-DMN------VSAIQVLIENIGSLDRAYEFAERCNE-----P-----AVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-ccc------HHHHHHHHHHhhhHHHHHHHHHhhCC-----h-----HHHHHHHHHHHhc
Confidence 33455677777877777652 111 12334445667888888888665532 1 3566799999997
Q ss_pred CCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHH
Q 026637 109 HSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWAL 188 (235)
Q Consensus 109 G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al 188 (235)
| ..-+|++-|=++=.| ..+.+++|++|= ...|++|..++.-.-...-++..|--.++|+
T Consensus 1118 ~-~v~dAieSyikadDp-------s~y~eVi~~a~~-------------~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1118 G-LVKDAIESYIKADDP-------SNYLEVIDVASR-------------TGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred C-chHHHHHHHHhcCCc-------HHHHHHHHHHHh-------------cCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 7 999999888443222 346667777761 3579999999875444445577899999999
Q ss_pred hcCCCchHHHHHHHH
Q 026637 189 ANTGEVSKAEDLLKG 203 (235)
Q Consensus 189 ~~ag~~~~~~~ll~~ 203 (235)
++.++..+.+++|.+
T Consensus 1177 Akt~rl~elE~fi~g 1191 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAG 1191 (1666)
T ss_pred HHhchHHHHHHHhcC
Confidence 999999888888753
No 273
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.78 E-value=59 Score=29.58 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=90.7
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH---DCCFKEAVQFMEE 81 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~---~Gr~~egi~~l~~ 81 (235)
+.-+...+|||.++|++.-++-.+=-...+..+-++-.+.-++++..+|+++--+-..-...+. ...+++-...+.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4567889999999998886655544444566688888888999999999988555433322222 1134455555555
Q ss_pred chhhhccCC-------------cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCC---chHhHhHHHHHH
Q 026637 82 CSSTWSSCS-------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV---HPEVYLNALGLL 145 (235)
Q Consensus 82 a~~~w~~~~-------------~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~---~~~~~~da~sLL 145 (235)
+.+.-.... ......+.+.++.+..+.| -.+.|+.++...+.-.+...... ...+.++...-.
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG-~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~F 206 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG-YTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEF 206 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC-chHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 533211100 0123457889999999998 99999999988877654222111 111345555555
Q ss_pred HHHHh
Q 026637 146 LRVYV 150 (235)
Q Consensus 146 ~Rl~l 150 (235)
|=-++
T Consensus 207 WeS~v 211 (321)
T PF08424_consen 207 WESEV 211 (321)
T ss_pred hCcCC
Confidence 55543
No 274
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.45 E-value=6.9 Score=30.76 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=8.8
Q ss_pred CChhhHHHHHHhhcCCCC
Q 026637 2 GRPDLCFDIIHQVLPYNQ 19 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p 19 (235)
|+...|+..++..+...+
T Consensus 10 GnhiKAL~iied~i~~h~ 27 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHG 27 (111)
T ss_pred cCHHHHHHHHHHHHHHcc
Confidence 445555555555554433
No 275
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.66 E-value=7 Score=36.52 Aligned_cols=58 Identities=10% Similarity=-0.023 Sum_probs=52.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
-+-..|..++|..+++.||++.|+++.++-.+|-..+|..+.-+|-..+-++....|.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 3456889999999999999999999999999999999999999999998888887765
No 276
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.55 E-value=10 Score=31.64 Aligned_cols=51 Identities=16% Similarity=0.037 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 37 ~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
..+..++.+++.+...| ++..+..++-++..+|+.+||..+++++....|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34556777888888888 7778888899999999999999999999888884
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.39 E-value=21 Score=31.01 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHH
Q 026637 41 AEEAAKKGLKINKHDCWSQH---ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (235)
Q Consensus 41 Ae~~arrAL~L~P~dawA~h---alahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~ 117 (235)
....+.+-..-||...+|.. .++.+....|++++|+.-+......-.+ .+ +..-..--+|...+..| .+|+|+.
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~-lk~l~~lRLArvq~q~~-k~D~AL~ 147 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-EN-LKALAALRLARVQLQQK-KADAALK 147 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-HH-HHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 34445555666778877654 5799999999999999999987654333 22 23444556899999998 9999999
Q ss_pred HHHhhch
Q 026637 118 IYDNHIW 124 (235)
Q Consensus 118 ~yd~~i~ 124 (235)
+.|+...
T Consensus 148 ~L~t~~~ 154 (207)
T COG2976 148 TLDTIKE 154 (207)
T ss_pred HHhcccc
Confidence 8876443
No 278
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=74.78 E-value=47 Score=35.04 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=60.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHH---------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh--
Q 026637 28 LAFSLLELGQMSDAEEAAKKG---------------------LKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS-- 84 (235)
Q Consensus 28 ~Af~L~e~g~~~~Ae~~arrA---------------------L~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~-- 84 (235)
-|--++-.|++|.|...+..| ++-...|--|-.-+|--|+-.|++.+|+.|+.++..
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 333466677777776665433 445667778888899999999999999999998743
Q ss_pred ----hhccCCcchhHHHHHHHHH------------HHHhCCCCHHHHHHHHHh
Q 026637 85 ----TWSSCSSFMYTHNWWHVAL------------CYLEGHSPMRKVLEIYDN 121 (235)
Q Consensus 85 ----~w~~~~~~l~~H~~WHlAL------------~~le~G~~~deAl~~yd~ 121 (235)
.-.. |++ .. -.|++|+ +|-+.|+.++.|+.+|.+
T Consensus 998 nAIRlcKE-nd~-~d-~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 998 NAIRLCKE-NDM-KD-RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHh-cCH-HH-HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 3222 222 22 2345554 445566677777777755
No 279
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=74.43 E-value=19 Score=28.33 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=57.7
Q ss_pred HcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHH
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (235)
+.|+.++|++|+.+..+.--..++.+.....=---+=.+..| +..+|++...+.+.+.. . ....++-+..+||--
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~-~~~~Ai~y~r~~l~~~~--~--~~~~~l~~~~~lL~~ 87 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREG-DIMEAIEYARKHLSPFN--D--EFLEELKKLMSLLAY 87 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhhhH--H--HHHHHHHHHHHHHHc
Confidence 899999999999988554322222222222111112223445 89999999999885431 1 245667788888844
Q ss_pred HHhcC-ccccc-----ccchHHHHHHHHh
Q 026637 148 VYVRG-ELDVF-----GNRLKVLADCVAD 170 (235)
Q Consensus 148 l~l~G-~~~~~-----g~rw~~la~~~~~ 170 (235)
-.... ...++ ..||+.|++.+..
T Consensus 88 ~~~~~~~~s~~~~l~~~~~~~~la~~~~~ 116 (145)
T PF10607_consen 88 PDPEEPLPSPYKELLSPERREELAEEFNS 116 (145)
T ss_pred CCcccccchHHHHHhChHHHHHHHHHHHH
Confidence 43332 00011 2688888877765
No 280
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.11 E-value=14 Score=30.72 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=19.7
Q ss_pred HHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026637 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~ 122 (235)
-+++.++..+.+|. |+. .-.++..+...| +.++|..+..+.
T Consensus 130 ~~~~a~~~l~~~P~-~~~-----~~~~a~~l~~~G-~~~eA~~~~~~~ 170 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNV-----YQRYALALALLG-DPEEARQWLARA 170 (193)
T ss_pred HHHHHHHHHHhCCC-HHH-----HHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 34455555555555 211 112445554555 566666655543
No 281
>PF12854 PPR_1: PPR repeat
Probab=70.64 E-value=10 Score=22.83 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~ 81 (235)
...+.++-+.+...|+.++|++++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34556666666666666666666553
No 282
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=35 Score=34.17 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 33 ~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
...++...+.-..+.++..||+++-++.+++-.++..|....++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 78 APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 33344444444445555555555555555555554444444333
No 283
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.81 E-value=67 Score=32.27 Aligned_cols=87 Identities=16% Similarity=-0.004 Sum_probs=73.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHH------HHHHHHcCCHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHAL------CHVLQHDCCFKE 74 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~hal------ahvl~~~Gr~~e 74 (235)
|+...+.-....++..+|+..-....++-+++-.| .+.-+......|+.+.|++...+.-+ +-.+...|+.++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE 160 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHH
Confidence 45556666777778889999999999999999888 44556677777999999999988888 888899999999
Q ss_pred HHHHHHHchhhhcc
Q 026637 75 AVQFMEECSSTWSS 88 (235)
Q Consensus 75 gi~~l~~a~~~w~~ 88 (235)
+...+++..+.-|.
T Consensus 161 ~~~~l~~~~d~~p~ 174 (620)
T COG3914 161 AELALERAVDLLPK 174 (620)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998766
No 284
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.21 E-value=13 Score=30.49 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=38.2
Q ss_pred hHHHHHHhhcC-CCCC-ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH
Q 026637 6 LCFDIIHQVLP-YNQQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (235)
Q Consensus 6 ~al~~~~ral~-~~p~-~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~h 60 (235)
+-....+..++ ..|+ .-.-+.++|++....++|+++....+.-|+.+||+..|.-
T Consensus 53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34445555665 3343 2345567888888888888888888888888888887653
No 285
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.09 E-value=55 Score=32.38 Aligned_cols=82 Identities=5% Similarity=-0.121 Sum_probs=61.4
Q ss_pred HHHHHhhcCCCCCChhHH-HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHchhh
Q 026637 8 FDIIHQVLPYNQQEDFIF-GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFMEECSST 85 (235)
Q Consensus 8 l~~~~ral~~~p~~~~~~-g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr-~~egi~~l~~a~~~ 85 (235)
....++|+...+.|.-+. ..++|+- ..+-+.+=-.++.++|..+|++|.-+---|-=.+..++ ++.+.+.+.+..+.
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 345667777677666544 4445544 44558888899999999999999777666655555555 99999999999999
Q ss_pred hccCC
Q 026637 86 WSSCS 90 (235)
Q Consensus 86 w~~~~ 90 (235)
.|++|
T Consensus 170 npdsp 174 (568)
T KOG2396|consen 170 NPDSP 174 (568)
T ss_pred CCCCh
Confidence 99977
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=66.73 E-value=28 Score=34.24 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d--awA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
.|+..-+|..+-+.|+.+||++.++.-+..+|.+ -..+-+|..++...++++|.-+.+.+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 4667778888889999999999999999988873 567889999999999999999999998543
No 287
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=66.12 E-value=1.3e+02 Score=29.13 Aligned_cols=116 Identities=12% Similarity=-0.001 Sum_probs=71.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH---hhCCCCHHHHHH---HHHHH-HHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDCWSQHA---LCHVL-QHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL---~L~P~dawA~ha---lahvl-~~~Gr~~ 73 (235)
.|+.+.++...+++....|.-+|+....=-.+.+.|++|.|.++..... .+.|+-+.=.-+ -+.++ ...-++.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 4888999999999999999999887776667889999999999865433 344443321111 11111 1233455
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~ 122 (235)
.+..+-.++...-|+ |-..-+- .|-.++..| +..++-.|+++.
T Consensus 247 ~Ar~~A~~a~KL~pd---lvPaav~--AAralf~d~-~~rKg~~ilE~a 289 (531)
T COG3898 247 SARDDALEANKLAPD---LVPAAVV--AARALFRDG-NLRKGSKILETA 289 (531)
T ss_pred HHHHHHHHHhhcCCc---cchHHHH--HHHHHHhcc-chhhhhhHHHHH
Confidence 666665555555433 2223332 455555555 666666666543
No 288
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.57 E-value=51 Score=31.54 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=70.2
Q ss_pred CCCCChhHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHH
Q 026637 17 YNQQEDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDC---------------WSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 17 ~~p~~~~~~g~~Af--~L~e~g~~~~Ae~~arrAL~L~P~da---------------wA~halahvl~~~Gr~~egi~~l 79 (235)
.+|+-|-.++++-+ .|.+..+..+-.+..++. .+|.+. -+.-.+.-|+...|++..|+..+
T Consensus 68 ~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~--~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 68 NNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRG--EDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred hccCcccHHHHHHHHHHHHHHHhHHHHHHHhhcc--CCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Confidence 35777777777776 667777777755555553 222221 35667788999999999999998
Q ss_pred HHchh----hhccCCcchhHH--HHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 80 EECSS----TWSSCSSFMYTH--NWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 80 ~~a~~----~w~~~~~~l~~H--~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
+.-.- .....| .+| ..-|.+-+||.++ +|.+|++.|...+
T Consensus 146 ~~idl~~~~l~~~V~---~~~is~~YyvGFaylMlr-RY~DAir~f~~iL 191 (404)
T PF10255_consen 146 ENIDLNKKGLYTKVP---ACHISTYYYVGFAYLMLR-RYADAIRTFSQIL 191 (404)
T ss_pred hccCcccchhhccCc---chheehHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 86522 222222 355 4568999999998 9999999996654
No 289
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.30 E-value=25 Score=32.55 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.+|..+-.+.|+|.+.+|..+.+|++.++|-+-....-+--++-..|+-=+++..+++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 66777788999999999999999999999999999999999999999866666665544
No 290
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.29 E-value=53 Score=31.50 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=77.4
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----HHHHHH
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----KEAVQF 78 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~--~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~----~egi~~ 78 (235)
++-+..+..++..+|.+..+..-...+|..++. +..=.++..++|+.+|++-.++|=.=.|..+.-+. .+=++|
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 455677888889999999999999999998884 67788899999999999999999999999888876 666888
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
.++.+..+++ | .|- ||.=-..+.
T Consensus 172 tt~~I~~nfS-N----Ysa-WhyRs~lL~ 194 (421)
T KOG0529|consen 172 TTKLINDNFS-N----YSA-WHYRSLLLS 194 (421)
T ss_pred HHHHHhccch-h----hhH-HHHHHHHHH
Confidence 8888887544 3 344 554444444
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.13 E-value=41 Score=31.94 Aligned_cols=148 Identities=11% Similarity=-0.027 Sum_probs=98.3
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHH
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~de 114 (235)
+|.+-+|-..-++-|.--|.|--|+-..-.++.+.|+.+.-...+++-.+.|..+-+. ...+.=-+|-.+.|.| -|++
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~-~sYv~GmyaFgL~E~g-~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC-YSYVHGMYAFGLEECG-IYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH-HHHHHHHHHhhHHHhc-cchh
Confidence 4555666666678889999999999999999999999999999999999998664311 1122122788889998 9999
Q ss_pred HHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccc-------ccccchHHHHHHHHhhhcchhcchhhHHHHHH
Q 026637 115 VLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELD-------VFGNRLKVLADCVADQANWYLECHLDLLILWA 187 (235)
Q Consensus 115 Al~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~-------~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~a 187 (235)
|.+.-|+.+... +.++ --.-++---|++.|.-- .-.|.|. -.... -..|=.|.++.
T Consensus 194 AEk~A~ralqiN--~~D~------Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~ml--------asHNyWH~Al~ 256 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDC------WASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWML--------ASHNYWHTALF 256 (491)
T ss_pred HHHHHHhhccCC--Ccch------HHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHH--------HhhhhHHHHHh
Confidence 999999988774 2221 11112233366655421 0135565 22222 23556677777
Q ss_pred HhcCCCchHHHHHH
Q 026637 188 LANTGEVSKAEDLL 201 (235)
Q Consensus 188 l~~ag~~~~~~~ll 201 (235)
+.-.++.+.+.++-
T Consensus 257 ~iE~aeye~aleIy 270 (491)
T KOG2610|consen 257 HIEGAEYEKALEIY 270 (491)
T ss_pred hhcccchhHHHHHH
Confidence 77777777665543
No 292
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=63.78 E-value=22 Score=33.29 Aligned_cols=89 Identities=8% Similarity=-0.037 Sum_probs=71.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHchhhhccCCc
Q 026637 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA-LCHVLQHDCCFKEAVQFMEECSSTWSSCSS 91 (235)
Q Consensus 13 ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ha-lahvl~~~Gr~~egi~~l~~a~~~w~~~~~ 91 (235)
|..-..|+|+-+..+++---...+-|.+--..+-++|..+|+|+.-+-- .+|=+..-++++.+.+.+.+..+.+|+.|
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p- 176 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP- 176 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc-
Confidence 3334467888888888776667788999999999999999999876654 78889999999999999999999999966
Q ss_pred chhHHHHHHHHHHHHhC
Q 026637 92 FMYTHNWWHVALCYLEG 108 (235)
Q Consensus 92 ~l~~H~~WHlAL~~le~ 108 (235)
.+| .+.+-+|.
T Consensus 177 ----~iw--~eyfr~El 187 (435)
T COG5191 177 ----RIW--IEYFRMEL 187 (435)
T ss_pred ----hHH--HHHHHHHH
Confidence 344 45555554
No 293
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.70 E-value=1.2e+02 Score=31.82 Aligned_cols=102 Identities=10% Similarity=-0.067 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~---------dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
.+|..--..+|.+.-.++|++|+.+..++-.--|. -+....-.+-|...+|+++++.+..+.+...=|..-
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 46667778899999999999999998887775555 123444567888999999999999999877655532
Q ss_pred cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026637 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 91 ~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~ 122 (235)
.+.+.-..--++.++.-.| ++++|+.+....
T Consensus 493 ~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~a 523 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRG-ELTQALALMQQA 523 (894)
T ss_pred chhhhhhhhhhhHHHHHhc-hHHHHHHHHHHH
Confidence 2222222223566666667 888888776443
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.56 E-value=34 Score=28.16 Aligned_cols=67 Identities=16% Similarity=0.069 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHchh-hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 55 DCWSQHALCHVLQHDC---CFKEAVQFMEECSS-TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 55 dawA~halahvl~~~G---r~~egi~~l~~a~~-~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
......+++|++...- +..+||..++.-.+ .-|.. -..+-++ +|+.|...| +|+++++..|..+..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--rRe~lyY--LAvg~yRlk-eY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--RRECLYY--LAVGHYRLK-EYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--chhhhhh--hHHHHHHHh-hHHHHHHHHHHHHhhC
Confidence 4567889999998765 46789999998876 33221 1122344 999999998 9999999999988874
No 295
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.36 E-value=19 Score=19.98 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026637 36 GQMSDAEEAAKKGLKINKHDCWSQHAL 62 (235)
Q Consensus 36 g~~~~Ae~~arrAL~L~P~dawA~hal 62 (235)
|+.++|..++++++...|+++..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 467788888888888888777555443
No 296
>PF12854 PPR_1: PPR repeat
Probab=62.17 E-value=20 Score=21.44 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHH
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKK 47 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arr 47 (235)
.+.+.++.+=-++...|++++|+++.++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4567778888899999999999998765
No 297
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=61.07 E-value=19 Score=31.10 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 41 AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 41 Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
|+..+++|+.+.|+++..+|.+|.+...+|+.=+++=++-++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 5666777777777777777777777777777777776665554
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=60.12 E-value=1.2e+02 Score=29.12 Aligned_cols=194 Identities=13% Similarity=0.099 Sum_probs=109.0
Q ss_pred hhHHHHHHhhcCCCC-C--ChhHHHHHHHHHHHhCCHHHHHHH----HHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHH
Q 026637 5 DLCFDIIHQVLPYNQ-Q--EDFIFGILAFSLLELGQMSDAEEA----AKKGLKINKHD--CWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 5 ~~al~~~~ral~~~p-~--~~~~~g~~Af~L~e~g~~~~Ae~~----arrAL~L~P~d--awA~halahvl~~~Gr~~eg 75 (235)
++++..-.+.|..-. . ---.+|.+.-++.++|+|.++... ..-|.+++--+ ..|.-+++-.++...++-+.
T Consensus 23 ~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt 102 (518)
T KOG1941|consen 23 EKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKT 102 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444445555555321 1 124788888999999999986554 34455555443 36788889999999999988
Q ss_pred HHHHHHchhhhccCCc--chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc-hHhHhHHHHHHHHHHhcC
Q 026637 76 VQFMEECSSTWSSCSS--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH-PEVYLNALGLLLRVYVRG 152 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~--~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~-~~~~~da~sLL~Rl~l~G 152 (235)
+.+-.-....=..++. -...|.. ++.+|+-+| .++++++.|++++.--...++.+. .++.|--.||.-||+=.-
T Consensus 103 ~~y~k~~l~lpgt~~~~~~gq~~l~--~~~Ahlgls-~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 103 ISYCKTCLGLPGTRAGQLGGQVSLS--MGNAHLGLS-VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred HHHHHHHhcCCCCCcccccchhhhh--HHHHhhhHH-HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 8886655433222221 1134544 889999998 799999999998876433333222 334466677776665322
Q ss_pred cccccccchHHHHHHHH-hhhcchhcchhhHHHHHHHhcCCCchHHHHHH
Q 026637 153 ELDVFGNRLKVLADCVA-DQANWYLECHLDLLILWALANTGEVSKAEDLL 201 (235)
Q Consensus 153 ~~~~~g~rw~~la~~~~-~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll 201 (235)
...-+...=-+|..... .-.....-.-.=.|.+.+|=.-|+...+.+--
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C 229 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC 229 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 11111111111111111 00000111233457777777777766555443
No 299
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.41 E-value=1.1e+02 Score=29.24 Aligned_cols=127 Identities=21% Similarity=0.210 Sum_probs=78.2
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCCC--------HHH------------HH
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----NKHD--------CWS------------QH 60 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L-----~P~d--------awA------------~h 60 (235)
+=...+..+++.+|.-.-++-.+| -+|.--..+||++.++||.. +.+. ..+ --
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLA--EEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKR 279 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLA--EEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKR 279 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHH
Confidence 334556678888888776665553 45556788899999988863 1111 122 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCC--CCHHHHHHHHHhhchhhhcCCCCCchHhH
Q 026637 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH--SPMRKVLEIYDNHIWKELEKPDAVHPEVY 138 (235)
Q Consensus 61 alahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G--~~~deAl~~yd~~i~~~~~~~~~~~~~~~ 138 (235)
.++.+--.+||..|++..++.-.+..|- .+++..|-+ +=-.++|.. .|...++.-||.---| | +-.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheN--LiEalLE~QAYADvqavLakYDdislP---k-----SA~i 348 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHEN--LLEALLELQAYADVQAVLAKYDDISLP---K-----SAAI 348 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccccCc---c-----hHHH
Confidence 4677778899999999999998888764 445555543 333444443 1344555666632222 2 2236
Q ss_pred hHHHHHH
Q 026637 139 LNALGLL 145 (235)
Q Consensus 139 ~da~sLL 145 (235)
+-.++||
T Consensus 349 cYTaALL 355 (556)
T KOG3807|consen 349 CYTAALL 355 (556)
T ss_pred HHHHHHH
Confidence 6677765
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.88 E-value=1.6e+02 Score=27.41 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=79.9
Q ss_pred CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-----hCCCC------------------------HHHHHHHHHHHH
Q 026637 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-----INKHD------------------------CWSQHALCHVLQ 67 (235)
Q Consensus 17 ~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-----L~P~d------------------------awA~halahvl~ 67 (235)
.+|-....+-.++-++..+|++..|.+..+|||= ..|.. --+++.-.+.+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 3566667888899999999999999999999962 22222 247788889999
Q ss_pred HcCCHHHHHHHHHHchhhhcc-CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 68 HDCCFKEAVQFMEECSSTWSS-CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~-~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
++|.+..|+++..=-....|. +| .+.-.++-.+.+..+ +|+--+++++....
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~-~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSR-QYQWLIDFSESPLA 167 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcC-CHHHHHHHHHhHhh
Confidence 999999999998888888888 66 233344666667777 89999999987554
No 301
>PF13041 PPR_2: PPR repeat family
Probab=57.30 E-value=12 Score=23.97 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=17.7
Q ss_pred HHHhCCCCHHHHHHHHHhhchhhh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
.+...| ++++|+++|++....+.
T Consensus 12 ~~~~~~-~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 12 GYCKAG-KFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHCc-CHHHHHHHHHHHHHcCC
Confidence 445666 89999999988887754
No 302
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.61 E-value=13 Score=25.14 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=25.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS 31 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~ 31 (235)
+|+...|+..++++|...|++..+......+
T Consensus 14 l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 14 LGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp TT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 5899999999999999999999888766543
No 303
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=54.85 E-value=1.3e+02 Score=30.97 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCC-HHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK----HDCWSQHALCHVLQHDCC-FKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P----~dawA~halahvl~~~Gr-~~egi 76 (235)
|=+...+....|++.+.=--|..--++|+-|+|+.-++++-++++|.++|-| -|.|.-.-.--+-.+.|. .+.+.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4445566677777777667777888888888888888889999999888865 355655544445555554 56677
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..++++... ||+-..--++--.|.+-=+-| -...|+.+|+++-..
T Consensus 571 dLFEqaL~~---Cpp~~aKtiyLlYA~lEEe~G-Lar~amsiyerat~~ 615 (835)
T KOG2047|consen 571 DLFEQALDG---CPPEHAKTIYLLYAKLEEEHG-LARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhc
Confidence 777888774 443211124433344433344 667788888774433
No 304
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.49 E-value=76 Score=30.48 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=89.3
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHh------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLEL------------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~------------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~ 72 (235)
.+++..-.+.+..+|+..+++++---+.++. ..+++=...-..+|..||++-+++|-..++++..+..
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 4566677777788898888887765554432 2456666778899999999999999999999998876
Q ss_pred --HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCC----CCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHH
Q 026637 73 --KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH----SPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (235)
Q Consensus 73 --~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G----~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (235)
..=+.+.+++.+..|+ | | |- ||.=-+-.+.- ....+-++..++.|... ..|-++-=+
T Consensus 126 ~~~~EL~lcek~L~~D~R-N-f---h~-W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~n-----------fSNYsaWhy 188 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPR-N-F---HA-WHYRRFVVEQAERSRNLEKEELEFTTKLINDN-----------FSNYSAWHY 188 (421)
T ss_pred hHHHHHHHHHHHHhcCcc-c-c---cc-hHHHHHHHHHHhcccccchhHHHHHHHHHhcc-----------chhhhHHHH
Confidence 6668888899998877 4 3 55 45444443321 01234466666766652 356677777
Q ss_pred HHHh
Q 026637 147 RVYV 150 (235)
Q Consensus 147 Rl~l 150 (235)
|.-+
T Consensus 189 Rs~l 192 (421)
T KOG0529|consen 189 RSLL 192 (421)
T ss_pred HHHH
Confidence 7654
No 305
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=53.68 E-value=29 Score=21.81 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKI 51 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L 51 (235)
++-.+|=+-.|+++|++|..=++++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555666666666666666654
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.19 E-value=42 Score=33.31 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P--~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
.+...+|-++.-+|++|+|....-+|..+-| ..+.|...--.+-.|.|+...|+..+.++.-
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 4678899999999999999999999999999 7777777777777899999999999887643
No 307
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.31 E-value=29 Score=34.24 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=47.4
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCCHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQ 59 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~-~~~Ae~~arrAL~L~P~dawA~ 59 (235)
+-++-....+++...|+++.+.-+-|+=+-|-|. .+.|.++..++|..||+++--.
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 3455567788889999999999999998888775 9999999999999999998544
No 308
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.92 E-value=40 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=32.7
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHch
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALC---HVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~hala---hvl~~~Gr~~egi~~l~~a~ 83 (235)
|-+.++.++|...-+++|+.-++.+.-.-++| -++...|++++.++|.-.-+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777666654444433 45667777777777755443
No 309
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=51.69 E-value=68 Score=32.13 Aligned_cols=74 Identities=14% Similarity=0.067 Sum_probs=56.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 46 KKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 46 rrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+-++.||+|..++..|---++.+ -+++....+++-....|..|..... ..-..+... +|+.+..+|.+.+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~-----yi~~El~sk-dfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKL-----YIERELASK-DFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHH-----HHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 777889999999999888888888 8899999999988888886633222 223344555 899999999887766
Q ss_pred h
Q 026637 126 E 126 (235)
Q Consensus 126 ~ 126 (235)
.
T Consensus 83 v 83 (656)
T KOG1914|consen 83 V 83 (656)
T ss_pred H
Confidence 3
No 310
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=51.17 E-value=41 Score=33.67 Aligned_cols=83 Identities=11% Similarity=-0.028 Sum_probs=63.7
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---hhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC---SSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a---~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
++....|+..+-+++..-|+...-+-+.+-++..++=..+....++.+ ++.. |+.+.+|+| ++-++.+++ +
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln---~s~~kah~~--la~aL~el~-r 460 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN---PSIQKAHFR--LARALNELT-R 460 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC---hHHHHHHHH--HHHHHHHHh-h
Confidence 344556888999999999999999999999988766555555555544 4444 556789998 999999998 9
Q ss_pred HHHHHHHHHhhc
Q 026637 112 MRKVLEIYDNHI 123 (235)
Q Consensus 112 ~deAl~~yd~~i 123 (235)
+-+|+.--+...
T Consensus 461 ~~eal~~~~alq 472 (758)
T KOG1310|consen 461 YLEALSCHWALQ 472 (758)
T ss_pred HHHhhhhHHHHh
Confidence 999998765443
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=49.60 E-value=87 Score=28.44 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=43.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
.+.-+|+++.+++...+-+.++|.|--++-.+--+++..|+...++..+++-...
T Consensus 162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3444678888888888888888888888888888888888888888887766554
No 312
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=2.2e+02 Score=26.00 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=79.9
Q ss_pred hHHHHHHhhcCCCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH------HHHHHHHHcCCHHHH
Q 026637 6 LCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH------ALCHVLQHDCCFKEA 75 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~h------alahvl~~~Gr~~eg 75 (235)
++.....+.+..|..|+ -.++--|.++--..+|++|....++|..---++..-.| ..+........+.|+
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555554333 34445566777888999999999999954444433233 345566677889999
Q ss_pred HHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+.+++++...+-.+++.-..-..--.|-=.++.- +-|+|+.+|.+.+.--
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv-~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENV-KPDDALQLYQRALAVV 140 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 9999999888877654422223333444456876 8999999999988764
No 313
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=47.74 E-value=28 Score=32.68 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=52.7
Q ss_pred hHHHHHHhhcCCCCCChhHHH-HHHHHHHHhCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCH
Q 026637 6 LCFDIIHQVLPYNQQEDFIFG-ILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCF 72 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g-~~Af~L~e~g~~~~Ae~~arrAL~L~P~da--wA~halahvl~~~Gr~ 72 (235)
.+-....+++...|.+...+- +-+|-+.+.+++.-+.+++.++|.+||++| |+-.-.-.+++++.-+
T Consensus 125 ~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yiTKL~ 194 (435)
T COG5191 125 EMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLI 194 (435)
T ss_pred HHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 344566778888998876554 478899999999999999999999999997 6666666777774433
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=46.88 E-value=1.7e+02 Score=24.31 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCc-chhHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNW 98 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~ 98 (235)
.++--+|--+...|++++|.+.+.++..-..... ....++--|....|++.....++.++...-..... -.+..+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4555667778999999999999999988776554 34457778888999999999999998654333111 1111222
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
=--|++++..| +|.+|-..|=..+..
T Consensus 117 ~~~gL~~l~~r-~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQR-DFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhc-hHHHHHHHHHccCcC
Confidence 23889999998 999999999766654
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.62 E-value=1.5e+02 Score=26.80 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=60.5
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHHc-CCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHH
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWS------QHALCHVLQHD-CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYL 106 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA------~halahvl~~~-Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~l 106 (235)
.++..+|.....+|+++=.+=..- +..+|.+++.. -+++.+|..++++-+-+....+. ...--.--.|.+.-
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 346666777777777765443332 33778888877 88999999999986665543221 01112334565555
Q ss_pred hCCCCHHHHHHHHHhhchhhh
Q 026637 107 EGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 107 e~G~~~deAl~~yd~~i~~~~ 127 (235)
.++ +|.+|+++|++..+.+.
T Consensus 166 ~le-qY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 166 QLE-QYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHH-HHHHHHHHHHHHHHHhc
Confidence 677 89999999988777653
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.21 E-value=2.1e+02 Score=25.21 Aligned_cols=62 Identities=16% Similarity=-0.016 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINK----HDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P----~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
..+-..+-..-..|+++.|.....++...++ .++...+.-+-.+-.+|+..+|+..+++...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455567789999999999999998762 3678899999999999999999999988876
No 317
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.03 E-value=39 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026637 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~e 74 (235)
.....|+|.-|.++....+..+|+|..+..-.+.++...|...+
T Consensus 79 ~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 79 AALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45578999999999999999999999999999998887776554
No 318
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.53 E-value=2.6e+02 Score=28.15 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~ 104 (235)
+|---..|.....++.+.+..+.-+.-....+-++..-+.-+..-|.++.+-+.+++-.+..++ + ..+- +|--
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~--~~~~ 83 (578)
T PRK15490 11 LGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND-E----ARYE--YARR 83 (578)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc-c----hHHH--HHHH
Confidence 4444456667777888888888877777777888888888888888888888888887777766 3 2343 3444
Q ss_pred HHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHH
Q 026637 105 YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVL 164 (235)
Q Consensus 105 ~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~l 164 (235)
+...| -.-.|..+.. .|.+..++.-.....++---+.+|=||+ |.++|||..=.-+
T Consensus 84 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 139 (578)
T PRK15490 84 LYNTG-LAKDAQLILK-KVSNGVQKKYNNYLGKINKICDLLERLE--GKAIPVGTNTCII 139 (578)
T ss_pred HHhhh-hhhHHHHHHH-HhCccHhHHHHHHHHHHHHHHHHHHHhc--cCCCCCccchHHH
Confidence 44555 5666666664 4544322221111112333356666766 7777787654433
No 319
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.24 E-value=73 Score=24.22 Aligned_cols=45 Identities=16% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
.-|+.-...|++.+|++.+.++-+..++.+-.+-.-+.+=+.+|+
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344455567888888888888866655555544444555555543
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.81 E-value=54 Score=28.64 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=38.8
Q ss_pred HHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.-|+.++++......... =|..++.|.+|-.|+..| ++++|+++|+.....
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g-~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLG-DYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 447777777666654332 245668999999999998 999999999887544
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=42.68 E-value=70 Score=28.61 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 30 FSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 30 f~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
--|...+.+++|+..++.-+.-+|.|+-.-|.+=..+.-.|+.+.|..-++-+-+..|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3567889999999999999999999999999999999999999999999988888877753
No 322
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=41.23 E-value=96 Score=22.97 Aligned_cols=45 Identities=13% Similarity=-0.024 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ 67 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~ 67 (235)
|+....+-.-...+....+...+..+++.+|+||-.+..+-|.+.
T Consensus 8 ~l~~v~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~ 52 (80)
T PRK15326 8 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLS 52 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 444444433344557778889999999999999998887776653
No 323
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.09 E-value=3.8e+02 Score=27.18 Aligned_cols=116 Identities=17% Similarity=0.113 Sum_probs=72.1
Q ss_pred CChhhHHHHHHhhcCC---------CCC------------C-hhH--HHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CH
Q 026637 2 GRPDLCFDIIHQVLPY---------NQQ------------E-DFI--FGILAFSLLELGQMSDAEEAAKKGLKINKH-DC 56 (235)
Q Consensus 2 G~~~~al~~~~ral~~---------~p~------------~-~~~--~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-da 56 (235)
||.+.+.++++|+|=. .|. + .++ +.-+--.+...|.+.-|.+.++--|.|+|. ||
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc
Confidence 6777888888887632 121 1 122 233334678899999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHc-----hhhhccCCcchhHHHHHHHHHHHHhCCCC---HHHHHHHHHhhch
Q 026637 57 WSQHALCHVLQHDCC-FKEAVQFMEEC-----SSTWSSCSSFMYTHNWWHVALCYLEGHSP---MRKVLEIYDNHIW 124 (235)
Q Consensus 57 wA~halahvl~~~Gr-~~egi~~l~~a-----~~~w~~~~~~l~~H~~WHlAL~~le~G~~---~deAl~~yd~~i~ 124 (235)
.+.-.+-.++....| ++==|.+.+.+ ...| |+|. +.--+|.+++..- . -..|+..+.+++.
T Consensus 378 l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~---PN~~---yS~AlA~f~l~~~-~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 378 LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQL---PNFG---YSLALARFFLRKN-EEDDRQSALNALLQALK 447 (665)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhc---CCch---HHHHHHHHHHhcC-ChhhHHHHHHHHHHHHH
Confidence 998888777765544 33333343333 2334 3342 3334788888743 3 2345555555544
No 324
>PF13041 PPR_2: PPR repeat family
Probab=40.45 E-value=61 Score=20.51 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 55 DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 55 dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|...+.++-+.+...|++++|++.+++-.+.--.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~ 35 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK 35 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 4557888999999999999999999988765433
No 325
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.72 E-value=1.2e+02 Score=26.53 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHH
Q 026637 41 AEEAAKKGLKIN------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMR 113 (235)
Q Consensus 41 Ae~~arrAL~L~------P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~d 113 (235)
-+++..+|.+.= .--......+|..+...|++++|+.+++.....|.+.+- .+...+.|.+.-|+...| +.+
T Consensus 157 iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~-~~~ 235 (247)
T PF11817_consen 157 IIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG-DVE 235 (247)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-CHH
Confidence 455555555532 223455668899999999999999999999766554321 123457777888888887 777
Q ss_pred HHHHHH
Q 026637 114 KVLEIY 119 (235)
Q Consensus 114 eAl~~y 119 (235)
+.+.+.
T Consensus 236 ~~l~~~ 241 (247)
T PF11817_consen 236 DYLTTS 241 (247)
T ss_pred HHHHHH
Confidence 776643
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.46 E-value=2.6e+02 Score=24.31 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHH
Q 026637 54 HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV 115 (235)
Q Consensus 54 ~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deA 115 (235)
+++.-+.++|-.+. .-+.+.++..+-++....+....+ -.-+.--+|-.+...| +++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~-n~eil~sLas~~~~~~-~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNF-NPEILKSLASIYQKLK-NYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHhc-chhhh
Confidence 44555555555443 555566666666665554443122 1122223555555555 55554
No 327
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=1.4e+02 Score=28.24 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=73.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHH
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCW----SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~daw----A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~ 104 (235)
|.-+....+|..|+..+-++|+-+-.|+. -+.+.|-+....|++..+|.-..++....|.. .--+|--|.+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-----~Ka~~R~Akc 162 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-----LKAYIRGAKC 162 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-----hhhhhhhhHH
Confidence 33345566889999999999998877754 46788999999999999999999988887552 3456779999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026637 105 YLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 105 ~le~G~~~deAl~~yd~~i~~ 125 (235)
++++. ++++|+.+++..+..
T Consensus 163 ~~eLe-~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 163 LLELE-RFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHH-HHHHHHHHHhhhhhh
Confidence 99998 899999999775433
No 328
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=36.16 E-value=74 Score=20.70 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026637 43 EAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 43 ~~arrAL~L~P~dawA~halahvl~~~Gr~~eg 75 (235)
....+|+--+|+|--+....|.=+..+|+.+.|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 345667777777777777777777777777544
No 329
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=36.04 E-value=2e+02 Score=22.07 Aligned_cols=86 Identities=8% Similarity=0.081 Sum_probs=50.6
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC--CcchhHHHHHHHHHHHHhCCC
Q 026637 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC--SSFMYTHNWWHVALCYLEGHS 110 (235)
Q Consensus 33 ~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~--~~~l~~H~~WHlAL~~le~G~ 110 (235)
+..+........-+..+..+|.++.-+..+...+.. -+..+.+++++.......-. -.....+..|..+.+.+...|
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~-~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAK-YDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH-HCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhc
Confidence 456788888899999999888777666666666654 46778888888421111000 000112234445555544444
Q ss_pred CHHHHHHHH
Q 026637 111 PMRKVLEIY 119 (235)
Q Consensus 111 ~~deAl~~y 119 (235)
++++|++++
T Consensus 97 ~~~~Al~~~ 105 (140)
T smart00299 97 NFKDAIVTL 105 (140)
T ss_pred CHHHHHHHH
Confidence 666666655
No 330
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.11 E-value=3e+02 Score=23.87 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=55.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHH
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY 105 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~ 105 (235)
+.-|...|.-|+|.+.+.. |+-...- .-|....+.++...|+..+++..+++.-..-+. |...+.---.--|..+
T Consensus 65 AL~lA~~~k~d~Alaaf~~-lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lL 142 (221)
T COG4649 65 ALKLAQENKTDDALAAFTD-LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHcCCchHHHHHHHH-HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHH
Confidence 4456667777777766543 3322221 356677788888889999999888887666555 5443333233355666
Q ss_pred HhCCCCHHHHHHHH
Q 026637 106 LEGHSPMRKVLEIY 119 (235)
Q Consensus 106 le~G~~~deAl~~y 119 (235)
++.| .|+.+....
T Consensus 143 vD~g-sy~dV~srv 155 (221)
T COG4649 143 VDNG-SYDDVSSRV 155 (221)
T ss_pred hccc-cHHHHHHHh
Confidence 7776 677766544
No 331
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=1.6e+02 Score=26.96 Aligned_cols=65 Identities=11% Similarity=-0.057 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
.+-+++-.+.-.|+|-++++..-.-|...|++.-|++..|-++..-=+.+||.+-+....+..|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 56678888889999999999999999999999999999999999999999999999999888765
No 332
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.80 E-value=3.5e+02 Score=24.51 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHH---hCCCCHHH
Q 026637 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYL---EGHSPMRK 114 (235)
Q Consensus 38 ~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~l---e~G~~~de 114 (235)
.+.-..+.+|||+.||++..-+-.+-.........++-..-.++.....|..+ -+|...=.+.. ..- .+++
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~-----~LW~~yL~~~q~~~~~f-~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP-----ELWREYLDFRQSNFASF-TVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHhccC-cHHH
Confidence 45577889999999999999998888888888888887777777777766532 24433222222 222 5889
Q ss_pred HHHHHHhhchhhhcCCCC------CchHhHhHHHHHHHHHHh----cCcccccccchHHHHHHHH
Q 026637 115 VLEIYDNHIWKELEKPDA------VHPEVYLNALGLLLRVYV----RGELDVFGNRLKVLADCVA 169 (235)
Q Consensus 115 Al~~yd~~i~~~~~~~~~------~~~~~~~da~sLL~Rl~l----~G~~~~~g~rw~~la~~~~ 169 (235)
++.+|.+.|..-...... .....-...+-+++|+-. .|...-.=.-|+.+.+.--
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 999999988764221111 111122455666666553 4553111134555555543
No 333
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.69 E-value=67 Score=18.01 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.9
Q ss_pred HHHHhcCCCchHHHHHHHHHHHH
Q 026637 185 LWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 185 ~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
+-++++.|+.+.+.++++.|++.
T Consensus 8 l~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 8 LRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 55788899999999999999874
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=33.23 E-value=2.3e+02 Score=30.23 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~ 108 (235)
|..-.|.|-+++|+.++|+.=. +.-+--.|+-+|+..||++..+..-+.--+ |-+...|-++-+.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-------~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-------NTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh-------hhHHHHHHHHHhh
Confidence 3344577888888888888643 334556788899999999886654433211 2233478777677
Q ss_pred CCCHHHHHHHHHhhchh
Q 026637 109 HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 109 G~~~deAl~~yd~~i~~ 125 (235)
+ |.+.|++.|++.=.+
T Consensus 872 ~-Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 872 R-DIEAALEYYEKAGVH 887 (1416)
T ss_pred c-cHHHHHHHHHhcCCh
Confidence 6 899999999775444
No 335
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=32.57 E-value=3.5e+02 Score=23.82 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CChhhHHHHHHhhcCCC-CCCh-------hHHHHHHHHHHHhC-CHHHHHHHHHHHHhh-------CCCCHHH-------
Q 026637 2 GRPDLCFDIIHQVLPYN-QQED-------FIFGILAFSLLELG-QMSDAEEAAKKGLKI-------NKHDCWS------- 58 (235)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~-------~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L-------~P~dawA------- 58 (235)
||.+.|.....|+=+.. ..+| ..+...|-.+.+.+ ++++|..-.+||+++ .+..+..
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Q ss_pred HHHHHHHHHHcCCHH---HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 59 QHALCHVLQHDCCFK---EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 59 ~halahvl~~~Gr~~---egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
++.++.++...+.++ +++..++......|+.| .-.++.+-+..- .+ +.+++.+++.+.|.
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~----~~~~L~l~il~~-~~-~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKP----EVFLLKLEILLK-SF-DEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc----HHHHHHHHHHhc-cC-ChhHHHHHHHHHHH
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.23 E-value=2.3e+02 Score=28.43 Aligned_cols=117 Identities=14% Similarity=0.008 Sum_probs=0.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||...+-..+.-+|.-.|++|..--..+-..++.|+|+.+.+..--+=.+=..-.-+.-.+---+...||++++....+.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
-...--.+|.. ..+ .|...-.+| -+|+++....+.+.
T Consensus 383 ~l~~eie~~ei--~~i---aa~sa~~l~-~~d~~~~~wk~~~~ 419 (831)
T PRK15180 383 MLSNEIEDEEV--LTV---AAGSADALQ-LFDKSYHYWKRVLL 419 (831)
T ss_pred HhccccCChhh--eee---ecccHHHHh-HHHHHHHHHHHHhc
No 337
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.44 E-value=1.3e+02 Score=31.07 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=47.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++++.+.+++-=++-|+ +|.-+|--|.|+.++.||.+++- ..||..||...+++
T Consensus 787 ~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfh---------------------kAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFH---------------------KAGRQREAVQVLEQ 842 (1081)
T ss_pred ccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHH---------------------HhcchHHHHHHHHH
Confidence 5666777766664434343 22334444778888888776654 45899999999887
Q ss_pred chhhhccCCcch-hHHHHHHHHHHHHh
Q 026637 82 CSSTWSSCSSFM-YTHNWWHVALCYLE 107 (235)
Q Consensus 82 a~~~w~~~~~~l-~~H~~WHlAL~~le 107 (235)
-...--..+.|. .+-++|-++--++.
T Consensus 843 Ltnnav~E~Rf~DA~y~yw~L~~q~Ld 869 (1081)
T KOG1538|consen 843 LTNNAVAESRFNDAAYYYWMLSMQCLD 869 (1081)
T ss_pred hhhhhhhhhhhccchhHHHHhhhhhhh
Confidence 632211111111 13467777776655
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=29.34 E-value=2.4e+02 Score=20.89 Aligned_cols=60 Identities=12% Similarity=-0.034 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 64 HVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 64 hvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.=++.+.+.++|+.-.+++.+.-++.+. +.-..=+++-+|.+.| .|.++++.-...|...
T Consensus 14 lkLY~~~~~~~Al~~W~~aL~k~~~~~~--rf~~lG~l~qA~~e~G-kyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 14 LKLYHQNETQQALQKWRKALEKITDRED--RFRVLGYLIQAHMEWG-KYREMLAFALQQLEIA 73 (80)
T ss_pred HHHhccchHHHHHHHHHHHHhhcCChHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3355666677777777777666555332 1122234667777776 7777777666555443
No 339
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.00 E-value=3.7e+02 Score=23.06 Aligned_cols=90 Identities=8% Similarity=-0.043 Sum_probs=59.9
Q ss_pred hCCHHHHHHHHHHHHh----hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhh---------ccCCcchhHHHH
Q 026637 35 LGQMSDAEEAAKKGLK----INKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTW---------SSCSSFMYTHNW 98 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~----L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w---------~~~~~~l~~H~~ 98 (235)
...+++|.+...-||- .++++ +....-+|+.+..+|+.+.-..|++++.... |..+ +=..-+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~-~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG-MDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC-chHHHHH
Confidence 4466667766655553 22222 6778889999999999888888887774422 1111 1011122
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.=+|..+...| ++++|+++|.+.|...
T Consensus 169 YLigeL~rrlg-~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLG-NYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHcCC
Confidence 23777788888 9999999999999874
No 340
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=28.47 E-value=2.3e+02 Score=24.22 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH 68 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~ 68 (235)
|+....+|....|+.+..++-+|......|+.=+|.=.+-|++...--.+-|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999998766669999999999988
No 341
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=27.74 E-value=3.5e+02 Score=22.35 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=52.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhh-------hc
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQ-------AN 173 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~-------~~ 173 (235)
+|.+|...| ++++|++.|.+.... ...+...+|.+=-+-|+-+.- ..|..|....... .+
T Consensus 42 l~~~~~~~G-d~~~A~k~y~~~~~~------~~~~~~~id~~l~~irv~i~~------~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 42 LADHYCKIG-DLEEALKAYSRARDY------CTSPGHKIDMCLNVIRVAIFF------GDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHhhh------cCCHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhccch
Confidence 888999998 899999999883332 123555677776666666532 3466666654431 11
Q ss_pred chhcchhhHHHHHHHhcCCCc-hHHHHHHHHHHHH
Q 026637 174 WYLECHLDLLILWALANTGEV-SKAEDLLKGLKSR 207 (235)
Q Consensus 174 ~~~~~F~d~H~~~al~~ag~~-~~~~~ll~~~~~~ 207 (235)
+.......+-..++..+.++. ..++.+|+..-.+
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222222233334444445543 3444556555444
No 342
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=1.5e+02 Score=27.03 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=52.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~h 60 (235)
|+.-+.++....+|.++|++.-++.-.|-+....=..++|++=..++|+++|.-+-++-
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 56778888999999999999999999999999999999999999999999997665443
No 343
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.28 E-value=59 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.2
Q ss_pred HHHhCCHHHHHHHHHHHHhhC
Q 026637 32 LLELGQMSDAEEAAKKGLKIN 52 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~ 52 (235)
+...|||++|++..++|..++
T Consensus 47 ~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 47 RYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred HHHCCCHHHHHHHHHHhHHHH
Confidence 445899999999999998664
No 344
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=26.26 E-value=1.2e+02 Score=16.57 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=12.6
Q ss_pred HhCCCCHHHHHHHHHhhchhh
Q 026637 106 LEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 106 le~G~~~deAl~~yd~~i~~~ 126 (235)
...| ++++|+++|++.....
T Consensus 11 ~~~~-~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 11 CKAG-RVEEALELFKEMLERG 30 (35)
T ss_pred HHCC-CHHHHHHHHHHHHHcC
Confidence 3444 6777777777666664
No 345
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=26.10 E-value=2.3e+02 Score=25.67 Aligned_cols=66 Identities=5% Similarity=-0.037 Sum_probs=46.4
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHh----------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026637 8 FDIIHQVLPYNQQEDFIFGILAFSLLEL----------------------GQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (235)
Q Consensus 8 l~~~~ral~~~p~~~~~~g~~Af~L~e~----------------------g~~~~Ae~~arrAL~L~P~dawA~halahv 65 (235)
+..++.=+...|.+.+++-..|+.+... -..+.|.....+|++++|+...|.-.+-.+
T Consensus 63 ~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~ 142 (277)
T PF13226_consen 63 LAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINI 142 (277)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3334333445787777666666654431 124568888999999999999999888888
Q ss_pred HHHcCCHH
Q 026637 66 LQHDCCFK 73 (235)
Q Consensus 66 l~~~Gr~~ 73 (235)
--..|.++
T Consensus 143 s~~fgeP~ 150 (277)
T PF13226_consen 143 SAYFGEPD 150 (277)
T ss_pred HhhcCCch
Confidence 77777775
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=25.98 E-value=5.1e+02 Score=25.52 Aligned_cols=141 Identities=10% Similarity=0.063 Sum_probs=91.6
Q ss_pred HhCCHHHHHHHHHHHHhhCCC-------------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhH
Q 026637 34 ELGQMSDAEEAAKKGLKINKH-------------DC-----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYT 95 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~-------------da-----wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~ 95 (235)
.++.|..|..-++.||++..+ |+ |.---+..+|...++++-|+...-+.+-.+|.. ++-
T Consensus 188 rqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~---frn 264 (569)
T PF15015_consen 188 RQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY---FRN 264 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch---hhH
Confidence 456666677777777766432 22 344567789999999999999999888888664 367
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHH---HhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcc-------c---cc-----
Q 026637 96 HNWWHVALCYLEGHSPMRKVLEIY---DNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL-------D---VF----- 157 (235)
Q Consensus 96 H~~WHlAL~~le~G~~~deAl~~y---d~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~-------~---~~----- 157 (235)
|+| .|.+.--+. +|-+|-+-+ |-..+- ++ ..-+-+.+..-|+|-+.++..- | ||
T Consensus 265 HLr--qAavfR~Le-Ry~eAarSamia~ymywl----~g-~~~q~~S~lIklyWqamiEeAiTr~esfsVmYtPfatki~ 336 (569)
T PF15015_consen 265 HLR--QAAVFRRLE-RYSEAARSAMIADYMYWL----SG-GSEQRISKLIKLYWQAMIEEAITRAESFSVMYTPFATKIK 336 (569)
T ss_pred HHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHh----cC-CchHhHHHHHHHHHHHHHHHHHhcccceeEEeeccccccc
Confidence 876 555554554 788876643 333333 11 1234468899999999886532 1 22
Q ss_pred ccchHHHHHHHHh-hhcchhcchhhHHHH
Q 026637 158 GNRLKVLADCVAD-QANWYLECHLDLLIL 185 (235)
Q Consensus 158 g~rw~~la~~~~~-~~~~~~~~F~d~H~~ 185 (235)
.+..+.+.+.... |+.-+.+.|.|.|-+
T Consensus 337 ~d~iek~k~~F~k~HPaY~~~IytD~~gl 365 (569)
T PF15015_consen 337 ADKIEKVKEVFTKTHPAYVEYIYTDPQGL 365 (569)
T ss_pred HHHHHHHHHHHHhhCccceeEEeccccee
Confidence 3677788888766 444455567776643
No 347
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=6e+02 Score=25.46 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKIN------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~------P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H 96 (235)
-++..+||-...+|++.||...-++.|.+. .--+-.+.-++||..-.|+..|+....+-+...-...|.+ ..
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di-~v- 523 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI-PV- 523 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc-hH-
Confidence 466677777778999999999999988764 3334566778999999999999999888887665555543 22
Q ss_pred HHHHHHHH---HHhCCCC--HHHHHHHHHh
Q 026637 97 NWWHVALC---YLEGHSP--MRKVLEIYDN 121 (235)
Q Consensus 97 ~~WHlAL~---~le~G~~--~deAl~~yd~ 121 (235)
..|-.+++ |...| + -++.-+.|.+
T Consensus 524 qLws~si~~~L~~a~g-~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 524 QLWSSSILTDLYQALG-EKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 34455543 34455 4 4455555544
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.76 E-value=1.6e+02 Score=20.17 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=9.0
Q ss_pred HcCCHHHHHHHHHHchhh
Q 026637 68 HDCCFKEAVQFMEECSST 85 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~ 85 (235)
..|++++|+..+.++...
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 345555555555555444
No 349
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=24.42 E-value=1.4e+02 Score=21.70 Aligned_cols=46 Identities=13% Similarity=-0.109 Sum_probs=31.7
Q ss_pred HHHHHHHhCCHHH-------HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026637 28 LAFSLLELGQMSD-------AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 28 ~Af~L~e~g~~~~-------Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~ 73 (235)
.|.-+...|++.+ |+++..+++.+.|+++--.+-..-+.+++.|.+
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 3444455556554 566666777789999988887777777777655
No 350
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.65 E-value=93 Score=19.01 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q 026637 37 QMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 37 ~~~~Ae~~arrAL~L~P~d 55 (235)
++|+|..+++|.+...|+-
T Consensus 2 E~dRAR~IyeR~v~~hp~~ 20 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV 20 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc
Confidence 5788888888888888764
No 351
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.43 E-value=2.5e+02 Score=19.16 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 026637 161 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 209 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 209 (235)
.+.+.+.+...-.| ..|.++.+.++...|+.+.+.+.|..+.....
T Consensus 9 ~~~~~~~lR~~RHD---~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 9 LEELIDSLRAQRHD---FLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455555433333 35899999999999999999998888876553
No 352
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=1.2e+02 Score=28.58 Aligned_cols=58 Identities=17% Similarity=-0.004 Sum_probs=39.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 14 al~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
++..+++..-+|+-.+-+.....++++|++-...|...+|+|.-..+.+..+.....+
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 3334455556666777777777777777777777777777777777776666554443
No 353
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=22.34 E-value=1.8e+02 Score=20.25 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHchhh
Q 026637 69 DCCFKEAVQFMEECSST 85 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~ 85 (235)
.|+.++|+..+.++.+.
T Consensus 21 ~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 21 AGDYEEALELYKKAIEY 37 (77)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55666666655555443
No 354
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=7.2e+02 Score=24.85 Aligned_cols=84 Identities=17% Similarity=0.063 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCC-HHHHHHHHHHchhhhccCCcchh
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDC----WSQHALCHVLQHDCC-FKEAVQFMEECSSTWSSCSSFMY 94 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL---~L~P~da----wA~halahvl~~~Gr-~~egi~~l~~a~~~w~~~~~~l~ 94 (235)
--.-.+|.+|-..|+-..|+..+...+ ....+|. .|+..+|-.+-.+|. ..|+.++++++.....+..--=+
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR 529 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence 455677889999999999999999998 5566665 478889999988888 99999999999887755431124
Q ss_pred HHHHHHHHHHHH
Q 026637 95 THNWWHVALCYL 106 (235)
Q Consensus 95 ~H~~WHlAL~~l 106 (235)
.|+--|.|+..+
T Consensus 530 Lh~rIqAAl~~~ 541 (546)
T KOG3783|consen 530 LHMRIQAALHTV 541 (546)
T ss_pred HHHHHHHHHHHH
Confidence 455555665443
No 355
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=22.15 E-value=1.4e+02 Score=16.14 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=9.9
Q ss_pred hCCCCHHHHHHHHHhhch
Q 026637 107 EGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 107 e~G~~~deAl~~yd~~i~ 124 (235)
..| +.++|.++|++...
T Consensus 12 ~~~-~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 12 KMG-QFEEALEVFDEMRE 28 (31)
T ss_pred ccc-hHHHHHHHHHHHhH
Confidence 444 56666666665543
No 356
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=21.99 E-value=6.5e+02 Score=23.99 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=75.0
Q ss_pred hhHHHHHHhhcCCCCCChh-HHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 5 DLCFDIIHQVLPYNQQEDF-IFGILAFSLLE-----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~-~~g~~Af~L~e-----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
.+.+..+.|++.+.---|| +...++-.+.. .-++. ++...-.+|..--.+|-.--|.+.+.-|.-=++.|++.
T Consensus 273 ~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~-~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ 351 (415)
T COG4941 273 DEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWP-AIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAM 351 (415)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChH-HHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHH
Confidence 4567778888886543333 33333333322 22343 34444556666566777778888999999999999998
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++.-... |..+++...|- --|-++..+| +.+||.+.||+.|.-.
T Consensus 352 ve~L~~~-~~L~gy~~~h~--~RadlL~rLg-r~~eAr~aydrAi~La 395 (415)
T COG4941 352 VEALLAR-PRLDGYHLYHA--ARADLLARLG-RVEEARAAYDRAIALA 395 (415)
T ss_pred HHHhhcc-cccccccccHH--HHHHHHHHhC-ChHHHHHHHHHHHHhc
Confidence 7755433 33343322332 2677777888 9999999999999873
No 357
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.82 E-value=8.4e+02 Score=24.69 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~ 104 (235)
...+|+-+...+..++|..-...+.....++ ........+-...++.+....++..-.+.-...+ +.++| +|-.
T Consensus 282 ~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~---rw~YW--~aRa 355 (644)
T PRK11619 282 RDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKD---EWRYW--QADL 355 (644)
T ss_pred HHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCH---hhHHH--HHHH
Confidence 3444444444332334433333333222223 3334444445578888877777776433222212 34455 8888
Q ss_pred HHhCCCCHHHHHHHHHhh
Q 026637 105 YLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 105 ~le~G~~~deAl~~yd~~ 122 (235)
+.+.| +.++|..+|.+.
T Consensus 356 ~~~~g-~~~~A~~~~~~~ 372 (644)
T PRK11619 356 LLEQG-RKAEAEEILRQL 372 (644)
T ss_pred HHHcC-CHHHHHHHHHHH
Confidence 88888 899999999875
No 358
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=21.56 E-value=1.7e+02 Score=17.99 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 182 LLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 182 ~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
+-|+|+|.++...+..++=+.=+++.
T Consensus 5 FnyAw~Lv~S~~~~d~~~Gi~lLe~l 30 (35)
T PF14852_consen 5 FNYAWGLVKSNNREDQQEGIALLEEL 30 (35)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 56788888888776666555555443
No 359
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=21.45 E-value=1.1e+02 Score=27.08 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHchhhhccC
Q 026637 70 CCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~ 89 (235)
++...|+.+++++...+|.+
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 35556666666666666554
No 360
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=21.26 E-value=3.3e+02 Score=27.09 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=56.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 45 AKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 45 arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
.|.-+.-||+|.-.+.+|-.-++.+|.+++-.+..++..+-.|-. .|.|=-.=---|... +|..+..+|-+.+.
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-----~~aw~ly~s~ELA~~-df~svE~lf~rCL~ 104 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-----EHAWRLYMSGELARK-DFRSVESLFGRCLK 104 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-----cHHHHHHhcchhhhh-hHHHHHHHHHHHHh
Confidence 466678899999999999999999999999999988887666543 355411111123344 78888888888776
Q ss_pred hh
Q 026637 125 KE 126 (235)
Q Consensus 125 ~~ 126 (235)
..
T Consensus 105 k~ 106 (660)
T COG5107 105 KS 106 (660)
T ss_pred hh
Confidence 64
No 361
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.22 E-value=6.4e+02 Score=23.06 Aligned_cols=82 Identities=10% Similarity=0.065 Sum_probs=46.2
Q ss_pred ChhhHHHHHHhhcCCCC-CChhHHHHH-----HHHHHHhCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCC
Q 026637 3 RPDLCFDIIHQVLPYNQ-QEDFIFGIL-----AFSLLELGQMSDAEEAAKKGLKI-----NKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p-~~~~~~g~~-----Af~L~e~g~~~~Ae~~arrAL~L-----~P~dawA~halahvl~~~Gr 71 (235)
+++++-++..+|...+. +-+.+|.-. +..+.|...+.|++..+++|..+ .|+-+-.--..+-=+.+.-.
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~ 125 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK 125 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC
Confidence 46677777888875332 333444333 33567788899999999998765 23222222222223334445
Q ss_pred HHHHHHHHHHchh
Q 026637 72 FKEAVQFMEECSS 84 (235)
Q Consensus 72 ~~egi~~l~~a~~ 84 (235)
+++++.++.++..
T Consensus 126 Pd~AlqlYqrala 138 (308)
T KOG1585|consen 126 PDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555533
No 362
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.01 E-value=1.2e+02 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 38 ~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
+.+|....++|++.+-. |++++|...+.+..+.|
T Consensus 3 l~~A~~l~~~Ave~d~~---------------~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 3 LEQAAELIRLALEKEEE---------------GDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHH
Confidence 35566667777655443 88888888888777665
No 363
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=20.29 E-value=5.1e+02 Score=21.51 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=39.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 31 SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
.+...|+-|+=++.++.-+.-+..+|.-+..+|.+|...|...++-+.+.++-.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 678888888888888887777777888899999999999999999888887743
No 364
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=7.7e+02 Score=23.52 Aligned_cols=142 Identities=16% Similarity=0.066 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH--ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~h--alahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHl 101 (235)
.--+.+-=++.+|.+.-|..++++.==-|=-|....- ..-+--...|++++++.|..+....-...++-+..-.----
T Consensus 118 l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQe 197 (389)
T KOG0396|consen 118 LDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQE 197 (389)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHH
Confidence 4445555677899999998888654333333332222 22344567899999999999885544433332222211112
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHH-HHHHhcCccc--cc-ccchHHHHHHHHh
Q 026637 102 ALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL-LRVYVRGELD--VF-GNRLKVLADCVAD 170 (235)
Q Consensus 102 AL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL-~Rl~l~G~~~--~~-g~rw~~la~~~~~ 170 (235)
..=++..+ .|++|++...+++.+-- ++ ...++-=++++| ++..-.+... .. .+||+.+++....
T Consensus 198 fIELi~~~-~~~~Ai~~akk~f~~~~-~~---~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s 265 (389)
T KOG0396|consen 198 FIELIKVD-NYDKAIAFAKKHFAPWA-KS---HKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLS 265 (389)
T ss_pred HHHHHHhc-cHHHHHHHHHHHHhhhh-hh---hHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhH
Confidence 22334555 89999999999999852 32 234444455544 4444443311 11 4799999988765
Done!