BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026638
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1
SV=1
Length = 678
Score = 313 bits (803), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 158/232 (68%), Positives = 188/232 (81%), Gaps = 3/232 (1%)
Query: 1 MFSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60
+FS H+FD TSR GPKAFVSEYAVTG DAGTGSLLA+LAE FLIGLEKNSD+V MASY
Sbjct: 444 LFSMYHQFDRTSRKGPKAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASY 503
Query: 61 APLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVAS 120
APLFVN NDRRW PDAIVFNS+ LYGTPSYWVQ+FF ESSGATLL +TL N S+S+VAS
Sbjct: 504 APLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGN-STSLVAS 562
Query: 121 AISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENS 180
AISW++ N K Y+RIK VN G++S N++V V GL PN +++SGS KT LTSTN+ DENS
Sbjct: 563 AISWKN--NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENS 620
Query: 181 FMEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVSMKMEGTDSFSR 232
F +P KVVP +LLE A +DM VV+ P+SF+SFDLL+ES ++M +DS S
Sbjct: 621 FSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSSH 672
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2
SV=1
Length = 674
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/236 (60%), Positives = 173/236 (73%), Gaps = 8/236 (3%)
Query: 1 MFSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60
+FSK+H FD+T R GPKAFVSEYAV DA G+LLAAL E FL+GLEKNSD+V M SY
Sbjct: 443 LFSKSHDFDNTPRNGPKAFVSEYAVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVSY 502
Query: 61 APLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVAS 120
APLFVN NDRRW PDAIVFNS+ LYGTPSYWVQ FF ESSGATLLN+T L +SS+ AS
Sbjct: 503 APLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNST-LKGKTSSVEAS 561
Query: 121 AISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENS 180
AIS++ N K Y++IK VN G SVNLKV+V GL K GS K LTS ++ DENS
Sbjct: 562 AISFQ--TNGKDYIQIKAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVMDENS 616
Query: 181 FMEPNKVVPSLTLLE-NAAKDMDVVISPYSFTSFDLLRESVS-MKMEGTDSFSRSS 234
F PN +VP +LLE +D+ V+ P+SF+SFDLL ES + +KM +DS+ ++S
Sbjct: 617 FSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTESENVIKMPISDSYKKTS 672
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1
Length = 825
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 7 KFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVN 66
++D R GPK F+ EYA GN G L+E F+ GLE+N+DVV +ASYAPL N
Sbjct: 452 RYDSYDRGGPKVFLGEYASQGNAWKNG-----LSEAAFMTGLERNADVVKLASYAPLLAN 506
Query: 67 ANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSG 101
+ +W+PD + FN+ + + +Y VQ+ F + G
Sbjct: 507 EDYVQWRPDLVWFNNRASWNSANYEVQKLFMNNVG 541
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2
Length = 629
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 26/207 (12%)
Query: 7 KFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVN 66
+FD+ R+ P F+ EY+ ++A + ++AE ++IG+E+NSDVV MA+YAPL
Sbjct: 435 QFDNKDRSVPY-FIGEYSCQQDNAWP-FMQGSVAEAVYMIGIERNSDVVKMAAYAPLLQL 492
Query: 67 ANDRRWKPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISW 124
N +W P+ I F N + + T SY+VQQ F + G T+ N T S + W
Sbjct: 493 VNSTQWTPNLIAFTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------SDSAFGPVYW 546
Query: 125 EDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEP 184
S Y +K+ N G+ + + V++ SG T +LT D +F
Sbjct: 547 VASSADDKYY-VKLANYGADTQEITVTI----------SGKTGGKLTVLADSDPKAFNSD 595
Query: 185 NKVVPSLTLLENAAKDMDVVISPYSFT 211
+ TL+ + DM ++FT
Sbjct: 596 TQ-----TLVTPSESDMKATNGKFTFT 617
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=abfA PE=3 SV=2
Length = 629
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 7 KFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVN 66
+FD+ R+ P F+ EY+ ++A + ++AE ++IG+E+NSDVV MA+YAPL
Sbjct: 435 QFDNKDRSVPY-FIGEYSCQQDNAWP-FMQGSVAEAVYMIGIERNSDVVKMAAYAPLLQL 492
Query: 67 ANDRRWKPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISW 124
N +W P+ I F N + + T SY+VQQ F + G T+ N T S + W
Sbjct: 493 VNSTQWTPNLIAFTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------SDSAFGPVYW 546
Query: 125 EDSENAKSYLRIKVVNLGSSSVNLKVSVDG 154
S Y +K+ N G+ + + V++ G
Sbjct: 547 VASSADDKYY-VKLANYGADTQEITVTISG 575
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1
Length = 628
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 8 FDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNA 67
FD+ R+ P F+ EY+ + ++ ++AE F+IGLE+NSDVV MA+YAPL
Sbjct: 436 FDNVDRSVPY-FIGEYSRW--EIPWPNMQGSVAEAVFMIGLERNSDVVKMAAYAPLLQLV 492
Query: 68 NDRRWKPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWE 125
N +W PD I F N + + SY+VQQ F + G T+ T S + W
Sbjct: 493 NSTQWTPDLISFTQNPNMVIDSTSYYVQQMFSVNRGDTIKEVT------SDSAFGPVYWV 546
Query: 126 DSENAKSYLRIKVVNLGSSSVNLKVSVDGL 155
S + SY +K+ N G+ + + VS+ G+
Sbjct: 547 ASSSGSSYY-VKLANYGADTQEVSVSIPGM 575
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1
SV=1
Length = 628
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 1 MFSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60
+ + + FD+ +R+ P F+ EY+ D ++ ++AE F+IG E+NSDVV MA+Y
Sbjct: 429 LVGQFNYFDNLNRSVPY-FIGEYSRWEIDWP--NMKGSVAEAVFMIGFERNSDVVKMAAY 485
Query: 61 APLFVNANDRRWKPDAIVFNS--AQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIV 118
APL N +W PD I + ++ + SY+VQ+ F + G T+ T S S
Sbjct: 486 APLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVT----SDSDF- 540
Query: 119 ASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 154
+ W S SY +K+ N GS + +L VS+ G
Sbjct: 541 -GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1
Length = 628
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 1 MFSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60
+ + + FD+ +R+ P F+ EY+ D ++ ++AE F+IG E+NSDVV MA+Y
Sbjct: 429 LVGQFNYFDNLNRSVPY-FIGEYSRWEIDWP--NMKGSVAEAVFMIGFERNSDVVKMAAY 485
Query: 61 APLFVNANDRRWKPDAIVFNS--AQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIV 118
APL N +W PD I + ++ + SY+VQ+ F + G T+ T S S
Sbjct: 486 APLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVT----SDSDF- 540
Query: 119 ASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 154
+ W S SY +K+ N GS + +L VS+ G
Sbjct: 541 -GPLYWVASSAGDSYY-MKLANYGSETQDLTVSIPG 574
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC
4308) GN=abfA PE=1 SV=2
Length = 628
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 1 MFSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60
+ + + FD+ R+ P F+ EY+ D ++ +++E F+IG E+NSDVV MA+Y
Sbjct: 429 LVGQFNYFDNLDRSVPY-FIGEYSRWEIDWP--NMKGSVSEAVFMIGFERNSDVVKMAAY 485
Query: 61 APLFVNANDRRWKPDAIVFNSA--QLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIV 118
APL N +W PD I + + ++ + SY+VQ+ F + G T+ T S S
Sbjct: 486 APLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYYVQEMFSRNRGDTIKEVT----SDSDF- 540
Query: 119 ASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 154
+ W S SY +K+ N GS + +L VS+ G
Sbjct: 541 -GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori
GN=abfA PE=1 SV=1
Length = 628
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 1 MFSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60
+ + + FD+ R+ P F+ EY+ D ++ +++E F+IG E+NSDVV MA+Y
Sbjct: 429 LVGQFNYFDNLYRSVPY-FIGEYSRWEIDWP--NMKGSVSEAVFMIGFERNSDVVKMAAY 485
Query: 61 APLFVNANDRRWKPDAIVFNSA--QLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIV 118
APL N +W PD I + + ++ + SY+VQ+ F + G T+ T S S
Sbjct: 486 APLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYYVQEMFSRNRGDTIKEVT----SDSDF- 540
Query: 119 ASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 154
+ W S SY +K+ N GS + +L VS+ G
Sbjct: 541 -GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|Q5BA89|ABFA_EMENI Probable alpha-N-arabinofuranosidase A OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=abfA PE=3 SV=1
Length = 565
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 36/188 (19%)
Query: 8 FDHTSRTGPKAFVSEYAVTGNDAGTGS----LLAALAEGGFLIGLEKNSDVVAMASYAPL 63
+D+ R G + V EY + G + + AE +IGLE+NSDVV MA+YAPL
Sbjct: 344 WDNHDR-GDRVLVGEYGCRNDSNPDGVFWSFMQGSCAEAVHMIGLERNSDVVMMAAYAPL 402
Query: 64 FVNANDRRW----------------------KPDAIVFNSAQ--LYGTPSYWVQQFFRES 99
+ +W +P F S L + SY+V + F +
Sbjct: 403 LQHFGYTQWSVCTPSASLAYLGIHPADRGEEQPTLFGFESRPNSLTLSTSYYVNRMFSTN 462
Query: 100 SGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNS 159
G+T+ S+ + W + N +Y ++K+ N G+++ + + V G+G
Sbjct: 463 QGSTVHKV------HSTAGFGPLYWVATSNETAY-QVKLANYGAANQTVNIRVPGVGRGV 515
Query: 160 IKLSGSTK 167
+++ K
Sbjct: 516 LEMISGPK 523
>sp|Q5H232|PQQB_XANOR Coenzyme PQQ synthesis protein B OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=pqqB PE=3 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 50 KNSDVVAMASYAPLFVNANDRRWKPDAIVFNSA-----QLYGTPSYWVQQFFRESSGATL 104
+ +D + A + V+A+ RW ++ N++ Q+ TP+ W QQ R S
Sbjct: 29 QQADGAQRRTQASIAVSADGERW----VLINASPDFRQQILATPALWPQQGLRHSP---- 80
Query: 105 LNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNL 141
+ A LLT+ +A +S +S+ + +V++L
Sbjct: 81 IKAVLLTSGEIDHIAGLLSMRESQPFALHASRRVLDL 117
>sp|Q2P4Y6|PQQB_XANOM Coenzyme PQQ synthesis protein B OS=Xanthomonas oryzae pv. oryzae
(strain MAFF 311018) GN=pqqB PE=3 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 50 KNSDVVAMASYAPLFVNANDRRWKPDAIVFNSA-----QLYGTPSYWVQQFFRESSGATL 104
+ +D + A + V+A+ RW ++ N++ Q+ TP+ W QQ R S
Sbjct: 29 QQADGAQRRTQASIAVSADGERW----VLINASPDFRQQILATPALWPQQGLRHSP---- 80
Query: 105 LNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNL 141
+ A LLT+ +A +S +S+ + +V++L
Sbjct: 81 IKAVLLTSGEIDHIAGLLSMRESQPFALHASRRVLDL 117
>sp|Q97LQ9|THIE_CLOAB Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=thiE PE=3 SV=1
Length = 211
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 83 QLYGTPSYWVQQFFR-ESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNL 141
++ G ++ +++ E +GAT L + N+S+ A A+S E+ +N K+ ++I VV +
Sbjct: 104 KIIGVSAHSIEEALEAERNGATYLGVGAIYNTSTKGDAQAVSLEELKNIKNSVKIPVVGI 163
Query: 142 G 142
G
Sbjct: 164 G 164
>sp|C5DL76|AIM3_LACTC Altered inheritance of mitochondria protein 3 OS=Lachancea
thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL
Y-8284) GN=AIM3 PE=3 SV=1
Length = 842
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 94 QFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSV 146
Q F E +G + + L + +S+ SW+DSE K LRIK+ N+ SS+
Sbjct: 345 QPFPEENGVSDVQE--LKSPTSATTVKPYSWKDSEELKESLRIKIQNVDISSL 395
>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana
GN=ABCB13 PE=3 SV=1
Length = 1245
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 23 YAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSA 82
YA+ G+ G++LA F +G+ V A Y+P F N R + AI+F A
Sbjct: 680 YALLGS---IGAVLAGAQTPLFSMGIA----YVLTAFYSP-FPNVIKRDVEKVAIIFAGA 731
Query: 83 QLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWED 126
+ P Y +Q +F G L + L+ S+I+++ I W D
Sbjct: 732 GIVTAPIYLLQHYFYTLMGERLTSRVRLS-LFSAILSNEIGWFD 774
>sp|Q49Y70|LYTH_STAS1 Probable cell wall amidase LytH OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=lytH PE=3 SV=1
Length = 291
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 48 LEKNSDVVAMASYAPLFVNANDRRWKPDAIV------FNSAQLYGTPSYWV---QQFFRE 98
LEK V+M + +V +DR K DA + S++ G+ YW Q+ E
Sbjct: 160 LEKEGATVSMTRESDTYVTLDDRNIKGDAYISIHNDSLKSSKANGSTVYWFKDNQKALAE 219
Query: 99 SSGATLLNATLLTNSSS 115
+ A+L LLTN +
Sbjct: 220 TLSASLQKKALLTNKGA 236
>sp|P15753|GSPN_KLEPN Type II secretion system protein N OS=Klebsiella pneumoniae GN=pulN
PE=3 SV=1
Length = 252
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 103 TLLNATLLTNSSSSIVASAISWEDS--ENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSI 160
TL A+ N I ASA+ W+D+ + L + VN S L +S
Sbjct: 131 TLPEASFNANGCRRIAASAVQWQDAALSSPAGLLELAQVNGKLSCTPAGALAVALTQDSH 190
Query: 161 KLSGSTKTQLTSTNLKDENSFMEPNKVVPS-LTLL--ENAAKDMDVVISPYSF 210
+LS + + LT N ++P + P+ LTLL +N KD I P+ +
Sbjct: 191 QLSLTGQGVLTPDGRYTFNGTLQPRQAAPALLTLLVAQNGRKDEQGRI-PWRW 242
>sp|P0C0R0|GYRA_STAES DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrA PE=3 SV=1
Length = 893
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 75 DAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKS 132
D ++F N ++Y Y V + R+S G ++NA L N + +++ I+ +D E+ +
Sbjct: 556 DHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDET--ISTMIAVKDLESEED 613
Query: 133 YL 134
YL
Sbjct: 614 YL 615
>sp|Q5HK04|GYRA_STAEQ DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrA PE=3 SV=1
Length = 893
Score = 30.8 bits (68), Expect = 9.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 75 DAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKS 132
D ++F N ++Y Y V + R+S G ++NA L N + +++ I+ +D E+ +
Sbjct: 556 DHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDET--ISTMIAVKDLESEED 613
Query: 133 YL 134
YL
Sbjct: 614 YL 615
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,202,636
Number of Sequences: 539616
Number of extensions: 3036365
Number of successful extensions: 6745
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6706
Number of HSP's gapped (non-prelim): 45
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)