Query 026638
Match_columns 235
No_of_seqs 117 out of 722
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06964 Alpha-L-AF_C: Alpha-L 100.0 4.2E-49 9.1E-54 328.0 19.2 172 21-209 1-177 (177)
2 smart00813 Alpha-L-AF_C Alpha- 100.0 5.8E-44 1.3E-48 300.4 19.7 175 21-209 1-189 (189)
3 COG3534 AbfA Alpha-L-arabinofu 100.0 1.4E-35 3.1E-40 271.4 14.9 191 14-218 284-501 (501)
4 PF02055 Glyco_hydro_30: O-Gly 95.9 0.19 4.1E-06 48.5 13.3 116 33-155 351-474 (496)
5 PF02806 Alpha-amylase_C: Alph 90.4 2.4 5.2E-05 30.9 8.0 70 134-216 23-94 (95)
6 PF01229 Glyco_hydro_39: Glyco 87.4 15 0.00033 35.2 13.3 83 17-105 276-367 (486)
7 KOG2566 Beta-glucocerebrosidas 85.7 8.2 0.00018 36.4 9.8 103 6-109 344-459 (518)
8 PF14509 GH97_C: Glycosyl-hydr 69.6 46 0.001 25.2 10.0 75 133-216 28-102 (103)
9 PLN02808 alpha-galactosidase 68.6 24 0.00052 33.2 7.7 65 133-217 321-385 (386)
10 COG5520 O-Glycosyl hydrolase [ 68.4 28 0.00061 32.5 7.9 105 92-219 328-432 (433)
11 PLN02229 alpha-galactosidase 66.0 40 0.00087 32.1 8.7 67 133-218 354-420 (427)
12 PLN02692 alpha-galactosidase 56.4 68 0.0015 30.4 8.4 67 133-218 345-411 (412)
13 TIGR02456 treS_nterm trehalose 51.9 44 0.00096 32.5 6.6 58 134-215 481-538 (539)
14 PF11614 FixG_C: IG-like fold 40.7 41 0.00089 25.5 3.7 25 132-156 33-57 (118)
15 COG3534 AbfA Alpha-L-arabinofu 39.1 28 0.00061 33.5 2.9 53 2-60 192-244 (501)
16 PRK14706 glycogen branching en 38.1 1.6E+02 0.0034 29.6 8.2 75 134-218 547-624 (639)
17 PRK12568 glycogen branching en 34.1 2E+02 0.0044 29.4 8.3 74 134-216 653-729 (730)
18 PRK12313 glycogen branching en 33.0 2E+02 0.0044 28.6 8.1 76 134-218 552-630 (633)
19 PRK05402 glycogen branching en 31.6 2E+02 0.0044 29.1 7.9 73 134-216 648-724 (726)
20 PF11941 DUF3459: Domain of un 29.6 2E+02 0.0043 20.1 6.7 16 134-149 44-59 (89)
21 PF06030 DUF916: Bacterial pro 29.0 2.7E+02 0.0059 21.5 7.1 23 133-155 30-52 (121)
22 PRK05449 aspartate alpha-decar 28.6 41 0.00089 26.6 1.9 34 49-83 79-112 (126)
23 COG0853 PanD Aspartate 1-decar 28.2 44 0.00095 26.4 1.9 35 48-83 77-111 (126)
24 cd06919 Asp_decarbox Aspartate 27.3 47 0.001 25.7 1.9 33 49-82 78-110 (111)
25 PLN02447 1,4-alpha-glucan-bran 26.7 3.1E+02 0.0068 28.2 8.2 76 135-218 654-733 (758)
26 PRK14705 glycogen branching en 26.0 2.5E+02 0.0054 30.6 7.6 74 134-216 1147-1223(1224)
27 PF08533 Glyco_hydro_42C: Beta 25.2 63 0.0014 21.4 2.1 17 134-150 13-29 (58)
28 TIGR00223 panD L-aspartate-alp 24.9 52 0.0011 26.0 1.8 34 49-83 79-112 (126)
29 TIGR02455 TreS_stutzeri trehal 22.3 4.1E+02 0.0089 27.0 7.8 63 133-218 622-684 (688)
30 PF02261 Asp_decarbox: Asparta 21.4 34 0.00074 26.7 0.2 33 50-83 80-112 (116)
31 PLN02960 alpha-amylase 20.6 4.1E+02 0.0089 27.9 7.7 21 196-216 872-892 (897)
32 PF10939 DUF2631: Protein of u 20.2 95 0.0021 21.7 2.2 29 21-50 20-48 (65)
No 1
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=100.00 E-value=4.2e-49 Score=327.98 Aligned_cols=172 Identities=40% Similarity=0.631 Sum_probs=144.8
Q ss_pred eccccccCCC-----CCCcHHHHHHHHHHHHHHHhcCCeEEeeccceEeeecCCCCCCccEEEecCCccccCccHHHHHH
Q 026638 21 SEYAVTGNDA-----GTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQF 95 (235)
Q Consensus 21 gEya~~~~~~-----g~~tl~dAL~eA~~L~~~eRnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~~~~~tpsYyv~~l 95 (235)
||||+|+... ..+||++||++|+||++||||||+|+|||||||+++++..||+|+||+|+++++|+||+||||||
T Consensus 1 dE~~~~~~~~~~~~~~~~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~l 80 (177)
T PF06964_consen 1 DEWNVWYEEAPPGLEQRYTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKL 80 (177)
T ss_dssp EEEEE-SCSSSSSS----BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHH
T ss_pred CCcCcccCcCCCcccccCCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHH
Confidence 8999987421 24799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCeEEeeEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCC
Q 026638 96 FRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNL 175 (235)
Q Consensus 96 ~s~~~g~~~l~~~v~~~~~~~l~~sa~~~~~~~d~~~~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~ 175 (235)
|++|+|+.+| ++|+++|+++++. ++++||+||++.++++++|+|+|+... ..+++++|+|+++
T Consensus 81 f~~~~g~~~l---------~~l~~~As~d~~~----~~l~v~vVN~~~~~~~v~l~l~g~~~~----~~a~~~~Ltg~~~ 143 (177)
T PF06964_consen 81 FSNHRGDTVL---------PPLDVSASRDEDG----GELYVKVVNRSSEPQTVTLNLQGFSPA----ATATVTTLTGDDP 143 (177)
T ss_dssp HHHCTTSEEE---------ESEEEEEEEETTT----TEEEEEEEE-SSSBEEEEEEETTSTS-----EEEEEEEEETSST
T ss_pred HHhcCCCeEe---------ccEEEEEEEECCC----CEEEEEEEECCCCCEEEEEEEcCCCCC----ceEEEEEEECCCc
Confidence 9999999999 4789999986443 369999999998899999999998763 6899999999999
Q ss_pred CCCCCCCCCceeeeeeeeEEeeCCeEEEEECCce
Q 026638 176 KDENSFMEPNKVVPSLTLLENAAKDMDVVISPYS 209 (235)
Q Consensus 176 ~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~S 209 (235)
.++|++++|++|+|++..+...++.|+++|||||
T Consensus 144 ~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 144 DAENTFENPENVVPVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp T-B-CSSSTTSSEEEEEEEEEETTEEEEEE-SSE
T ss_pred ccccCCCCCCEEEEEEeeEEecCCEEEEEeCCCC
Confidence 9999999999999999988888999999999998
No 2
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=100.00 E-value=5.8e-44 Score=300.38 Aligned_cols=175 Identities=39% Similarity=0.537 Sum_probs=154.9
Q ss_pred eccccccCC-C----CCCcHHHHHHHHHHHHHHHhcCCeEEeeccceEeeecCCCCCCccEEEecCCccccCccHHHHHH
Q 026638 21 SEYAVTGND-A----GTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQF 95 (235)
Q Consensus 21 gEya~~~~~-~----g~~tl~dAL~eA~~L~~~eRnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~~~~~tpsYyv~~l 95 (235)
|||++|+.. + ..+||+|||++|++|++||||||+|+|||||||+++++ |.+|.++++++|+||+||||+|
T Consensus 1 dEw~~w~~~~~~~l~~~~tl~dAL~~A~~l~~~~Rn~D~V~ma~~A~lvn~~~-----p~~i~~~~~~~~~t~~Yyv~~l 75 (189)
T smart00813 1 DEWNVWYDSEPGLLEQQYTLRDALAEAAFLNGLERNSDRVKMASYAQLVNVIN-----PDMLTFNGGQAWRTTTYYVFQL 75 (189)
T ss_pred CCcccCcCCCCccccccCcHHHHHHHHHHHHHHHhccCcEEeehhhhhhcccc-----ceEEEeCCCCEEECCcCHHHHH
Confidence 799999852 1 25899999999999999999999999999999999874 7999999999999999999999
Q ss_pred HhhccCCeEEeeEEecCCC-------CceEEEEEEecccCCCcceEEEEEEeCCC-CcEEEEEEEccCCCCcccccceEE
Q 026638 96 FRESSGATLLNATLLTNSS-------SSIVASAISWEDSENAKSYLRIKVVNLGS-SSVNLKVSVDGLGPNSIKLSGSTK 167 (235)
Q Consensus 96 ~s~~~g~~~l~~~v~~~~~-------~~l~~sa~~~~~~~d~~~~l~vkvVN~~~-~~~~~~i~l~g~~~~~~~~~~~~~ 167 (235)
|+.|+|+++|++.++++.+ +.|+++|+++++. ++++||+||++. ++++++|+|+|++. ..+++
T Consensus 76 fs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~----~~~~v~vvN~~~~~~~~~~l~l~g~~~-----~~~~~ 146 (189)
T smart00813 76 FSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDG----GSLTVKVVNRSPEEAVTVTISLRGLKA-----KSAEG 146 (189)
T ss_pred hhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCC----CEEEEEEEeCCCCcCEEEEEEecCCcc-----ceEEE
Confidence 9999999999999988754 4699999975332 369999999996 58999999999864 36899
Q ss_pred EEEecCCCCCCCCCCCCceeeeeeeeE-EeeCCeEEEEECCce
Q 026638 168 TQLTSTNLKDENSFMEPNKVVPSLTLL-ENAAKDMDVVISPYS 209 (235)
Q Consensus 168 ~~L~~~d~~a~Nt~~~P~~V~p~~~~~-~~~~~~~~~~lp~~S 209 (235)
++|+++++.+.||+++|++|+|++.+. ...++.|+++|||+|
T Consensus 147 ~~l~~~~~~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~~lp~~S 189 (189)
T smart00813 147 TVLTSPDLNAANTFEDPNKVVPVTSTLAAVEGGTLTVTLPPHS 189 (189)
T ss_pred EEEeCCCCccccCCCCCCeeeccccCCceeeCCEEEEEeCCCC
Confidence 999999999999999999999998764 566789999999998
No 3
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=271.36 Aligned_cols=191 Identities=24% Similarity=0.251 Sum_probs=167.9
Q ss_pred CCCcEEEeccccccCC--------C-----C----CCcHHHHHHHHHHHHHHHhcCCeEEeeccceEeeecCCCCCCccE
Q 026638 14 TGPKAFVSEYAVTGND--------A-----G----TGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRRWKPDA 76 (235)
Q Consensus 14 ~~pkv~vgEya~~~~~--------~-----g----~~tl~dAL~eA~~L~~~eRnsD~V~mA~yApl~~~~~~~~W~p~l 76 (235)
+..++++|||++|+.. | + .+||+|||.+|..|+.|.||||+|+|||+||++|.+. .+
T Consensus 284 k~v~l~fDEWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~------ai 357 (501)
T COG3534 284 KRVGLSFDEWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLA------AI 357 (501)
T ss_pred cceeEEEecccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhh------he
Confidence 4568999999999843 2 2 3799999999999999999999999999999998875 57
Q ss_pred EEecCCccccCccHHHHHHHhhccCCeEEeeEEecCCCC--------ceEEEEEEecccCCCcceEEEEEEeCCC-CcEE
Q 026638 77 IVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSS--------SIVASAISWEDSENAKSYLRIKVVNLGS-SSVN 147 (235)
Q Consensus 77 i~~~~~~~~~tpsYyv~~l~s~~~g~~~l~~~v~~~~~~--------~l~~sa~~~~~~~d~~~~l~vkvVN~~~-~~~~ 147 (235)
+...++++|+||.||||+|++.|.++..|++.+++++|. -|++||+++++++ .|+||+||++. ++..
T Consensus 358 ~~ekgg~~~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~----~l~i~vvN~~~~d~~~ 433 (501)
T COG3534 358 MTEKGGPAWLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGG----ELTIFVVNRALEDALK 433 (501)
T ss_pred eecCCCcceeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCC----eEEEEEEecccccccc
Confidence 778899999999999999999999999999999998764 2889998765533 59999999996 5599
Q ss_pred EEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeee-EEeeCCeEEEEECCceEEEEEEeec
Q 026638 148 LKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTL-LENAAKDMDVVISPYSFTSFDLLRE 218 (235)
Q Consensus 148 ~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~-~~~~~~~~~~~lp~~Sv~vl~l~~~ 218 (235)
++|+|+|++.. ..+++++|+|++++|.|+|+.|++|+|++.. ..+.++.|+++|||+||.||||+++
T Consensus 434 ~~i~l~G~~~a----~~~~~~~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~~~~~~S~~virl~~~ 501 (501)
T COG3534 434 LNISLNGLKKA----KSAEHQVLTGDDLNATNTFDAPENVVPVPGKGATVSKNELTLDLPPLSVSVIRLKLK 501 (501)
T ss_pred ceEEecccccc----ceeeEEEEecCccccccCCCCCCceecccCCCccccCCceeEecCCceEEEEEEecC
Confidence 99999999753 5899999999999999999999999999876 4667779999999999999999863
No 4
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=95.89 E-value=0.19 Score=48.52 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=72.5
Q ss_pred CcHHHHHHHHHHHHHHHhcCCeEEeeccceEeeecCCCCCCc------cEEEecCCccccCccHHHHHHHhhc--cCCeE
Q 026638 33 GSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRRWKP------DAIVFNSAQLYGTPSYWVQQFFRES--SGATL 104 (235)
Q Consensus 33 ~tl~dAL~eA~~L~~~eRnsD~V~mA~yApl~~~~~~~~W~p------~li~~~~~~~~~tpsYyv~~l~s~~--~g~~~ 104 (235)
+.|..|.-.+-.+++-++|. .....-.-..+...+++.|.. -++..+.++.+++|.||.+..||.. .|.+.
T Consensus 351 g~w~~~~~y~~~ii~~lnn~-~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~R 429 (496)
T PF02055_consen 351 GSWDRAERYAHDIIGDLNNW-VSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVR 429 (496)
T ss_dssp THHHHHHHHHHHHHHHHHTT-EEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EE
T ss_pred ccHHHHHHHHHHHHHHHHhh-ceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEE
Confidence 45777776677777888886 222222234445555665543 2344466789999999999999996 68888
Q ss_pred EeeEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccC
Q 026638 105 LNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGL 155 (235)
Q Consensus 105 l~~~v~~~~~~~l~~sa~~~~~~~d~~~~l~vkvVN~~~~~~~~~i~l~g~ 155 (235)
+.+..... -+.|..+|-.. .|| .++|-+.|++.++..++|.+++.
T Consensus 430 I~st~~~~-~~~l~~vAF~n---PDG--s~vvVv~N~~~~~~~~~v~v~~~ 474 (496)
T PF02055_consen 430 IGSTSSSS-DSGLEAVAFLN---PDG--SIVVVVLNRGDSDQNFSVTVKDG 474 (496)
T ss_dssp EEEEESSS-TTTEEEEEEEE---TTS--EEEEEEEE-SSS-EEEEEEEECT
T ss_pred EEeeccCC-CCceeEEEEEC---CCC--CEEEEEEcCCCCccceEEEEecC
Confidence 88776432 23587777643 343 46778899998888888888753
No 5
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=90.41 E-value=2.4 Score=30.89 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEE-ecCCCCCCCCC-CCCceeeeeeeeEEeeCCeEEEEECCceEE
Q 026638 134 LRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQL-TSTNLKDENSF-MEPNKVVPSLTLLENAAKDMDVVISPYSFT 211 (235)
Q Consensus 134 l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L-~~~d~~a~Nt~-~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~ 211 (235)
.+|.++|.+++....+..+ |.. ..++...+ .+++..-..+. .+...|. ...++.++++|||+|..
T Consensus 23 ~~lvv~Nf~~~~~~~~~~~-~~p------~~g~y~~vlnsd~~~~~g~~~~~~~~v~------~~~~g~~~~~lp~~s~~ 89 (95)
T PF02806_consen 23 RVLVVFNFSPEAVYEDYRI-GVP------EAGRYKEVLNSDDEEYGGSGKGNSGEVT------VDSNGRITVTLPPYSAL 89 (95)
T ss_dssp EEEEEEESSSS-EEEEEEE-CSS------SSEEEEETTTTTCEEEEESSCSETSEEE------EETTSEEEEEESTTEEE
T ss_pred EEEEEEECCCcccceeEEe-CCC------CcceeeEEeCCCccEECCcccccCceEE------EeeCCEEEEEECCCEEE
Confidence 5788999998743444444 222 12343333 33322111111 1111222 23456799999999999
Q ss_pred EEEEe
Q 026638 212 SFDLL 216 (235)
Q Consensus 212 vl~l~ 216 (235)
||+++
T Consensus 90 vl~~~ 94 (95)
T PF02806_consen 90 VLKLK 94 (95)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99986
No 6
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=87.44 E-value=15 Score=35.18 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=45.3
Q ss_pred cEEEeccccccCCCCCCcHHHHHHHHHHHHH-HHhcCCe-EEeeccceEeee--cCCCC---CC--ccEEEecCCccccC
Q 026638 17 KAFVSEYAVTGNDAGTGSLLAALAEGGFLIG-LEKNSDV-VAMASYAPLFVN--ANDRR---WK--PDAIVFNSAQLYGT 87 (235)
Q Consensus 17 kv~vgEya~~~~~~g~~tl~dAL~eA~~L~~-~eRnsD~-V~mA~yApl~~~--~~~~~---W~--p~li~~~~~~~~~t 87 (235)
.+++.||+.... .+..+.|.+..|+++.- ++.+.+. |-+-+|-.+.-. ..+.. +. --|+... -++-
T Consensus 276 ~~~~tE~n~~~~--~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~---gI~K 350 (486)
T PF01229_consen 276 PLYITEWNASIS--PRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL---GIPK 350 (486)
T ss_dssp -EEEEEEES-SS--TT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC---CEE-
T ss_pred ceeecccccccC--CCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc---CCCc
Confidence 489999998642 23567788888888877 7777664 777666433211 01111 00 1223222 3456
Q ss_pred ccHHHHHHHhhccCCeEE
Q 026638 88 PSYWVQQFFRESSGATLL 105 (235)
Q Consensus 88 psYyv~~l~s~~~g~~~l 105 (235)
|+||.++++... |+.++
T Consensus 351 Pa~~A~~~L~~l-g~~~~ 367 (486)
T PF01229_consen 351 PAYYAFQLLNKL-GDRLV 367 (486)
T ss_dssp HHHHHHHHHTT---SEEE
T ss_pred hHHHHHHHHHhh-CceeE
Confidence 999999999987 55554
No 7
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=85.65 E-value=8.2 Score=36.38 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=63.5
Q ss_pred CcCccCCCCCCcEEE-eccccccC----CCCCCcHHHHHHHHHHHHHHHhcCCeEEeeccceEeeecCCCCCCc-----c
Q 026638 6 HKFDHTSRTGPKAFV-SEYAVTGN----DAGTGSLLAALAEGGFLIGLEKNSDVVAMASYAPLFVNANDRRWKP-----D 75 (235)
Q Consensus 6 ~~yD~y~r~~pkv~v-gEya~~~~----~~g~~tl~dAL~eA~~L~~~eRnsD~V~mA~yApl~~~~~~~~W~p-----~ 75 (235)
..-|...|++|..|+ |-=|+-+. ++..++|-.|---|.=++.=+.|- ++.=.-.--++.-.+++.|-. .
T Consensus 344 ~~L~eTh~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~-vtGWtdwNl~Ld~~GGP~wv~nfvDsp 422 (518)
T KOG2566|consen 344 KHLDETHRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNH-VTGWTDWNLILDAQGGPNWVSNFVDSP 422 (518)
T ss_pred hhhhhHHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhh-ccceeeeeeEecCcCCchhHhccCCCc
Confidence 344567888996554 54455432 233477777766665555443332 333344445666667777853 3
Q ss_pred EEEe-cCCccccCccHHHHHHHhhc--cCCeEEeeEE
Q 026638 76 AIVF-NSAQLYGTPSYWVQQFFRES--SGATLLNATL 109 (235)
Q Consensus 76 li~~-~~~~~~~tpsYyv~~l~s~~--~g~~~l~~~v 109 (235)
+|.+ ...+.|+||-||++..||.. .|.+.+....
T Consensus 423 iIv~~t~~~fYKQPmfya~~hFSkFl~pGs~Rv~~~i 459 (518)
T KOG2566|consen 423 IIVNPTAQEFYKQPMFYALGHFSKFLPPGSVRVGHSI 459 (518)
T ss_pred eEecHHHHHHhhccHHHHHHHHhhcCCCCceEeeeee
Confidence 4554 55668999999999999986 4655555444
No 8
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=69.61 E-value=46 Score=25.17 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=43.8
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEE
Q 026638 133 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 212 (235)
Q Consensus 133 ~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~v 212 (235)
.-+|-.+|-... ..++|.|+-+..+ ..-+++.+. +.+++.. .+|..+.-++..+. .++.+++.|.|..=-+
T Consensus 28 ~Wyvg~in~~~~-r~i~l~L~FL~~g----~~y~a~i~~-D~~~a~~--~~~~~~~~~~~~v~-~~~~l~i~l~~~GG~v 98 (103)
T PF14509_consen 28 DWYVGGINGEDA-RTITLPLSFLDKG----KKYTATIYT-DGPDADY--TNPEAYKIETRKVT-SGDKLTITLAPGGGFV 98 (103)
T ss_dssp EEEEEEEE-TT--EEEEEEGCCS-TT------EEEEEEE-E-TTTCT--TCTT-EEEEEEEE--TT-EEEEEE-TT-EEE
T ss_pred CEEEEEeeCCCc-eEEEEECcccCCC----CcEEEEEEE-eCCcccc--cCCcceEEEEEEEC-CCCEEEEEEeCCCcEE
Confidence 588999996544 4488888866542 133445554 3433333 57777776666653 3578999999998888
Q ss_pred EEEe
Q 026638 213 FDLL 216 (235)
Q Consensus 213 l~l~ 216 (235)
++|.
T Consensus 99 i~~~ 102 (103)
T PF14509_consen 99 IRIT 102 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 9
>PLN02808 alpha-galactosidase
Probab=68.58 E-value=24 Score=33.17 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=40.4
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEE
Q 026638 133 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 212 (235)
Q Consensus 133 ~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~v 212 (235)
...|.+.|++.++.++++++..++... ....++.=| -..-+.. ...+.+++++|||.+.+
T Consensus 321 ~~aVal~N~~~~~~~~~~~~~~lgl~~--~~~~~vrDl-----Ws~~~~g-------------~~~~~~~~~v~pHg~~~ 380 (386)
T PLN02808 321 RVAVVLWNRGSSRATITARWSDIGLNS--SAVVNARDL-----WAHSTQS-------------SVKGQLSALVESHACKM 380 (386)
T ss_pred CEEEEEEECCCCCEEEEEEHHHhCCCC--CCceEEEEC-----CCCCccC-------------cccceEEEEECCceEEE
Confidence 478999999998888998887543310 011222222 1111110 01245889999999999
Q ss_pred EEEee
Q 026638 213 FDLLR 217 (235)
Q Consensus 213 l~l~~ 217 (235)
+||..
T Consensus 381 ~rlt~ 385 (386)
T PLN02808 381 YVLTP 385 (386)
T ss_pred EEEeC
Confidence 99975
No 10
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=68.42 E-value=28 Score=32.53 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHHHHhhccCCeEEeeEEecCCCCceEEEEEEecccCCCcceEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEe
Q 026638 92 VQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLT 171 (235)
Q Consensus 92 v~~l~s~~~g~~~l~~~v~~~~~~~l~~sa~~~~~~~d~~~~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~ 171 (235)
.+..|+...+.-++.+..+...++-+++++- .+++ .+.|-..|.+..++.=++.++.-.. .-...+++
T Consensus 328 ~ma~fskf~q~gy~rldat~sp~~nvyvsay----vg~n--kvvivaink~~~~vnq~f~fqNpdg------snVs~w~n 395 (433)
T COG5520 328 CMAHFSKFVQNGYVRLDATKSPYGNVYVSAY----VGPN--KVVIVAINKGTYPVNQSFNFQNPDG------SNVSSWVN 395 (433)
T ss_pred eEeeeeeeccCCceEEecccCccceEEEEEE----ecCC--cEEEEeecccccccceeEEEECCCC------CeEEEEEe
Confidence 3444444333333344443345556777774 2332 4778788887777666666765432 23344555
Q ss_pred cCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEEEEEeecc
Q 026638 172 STNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRES 219 (235)
Q Consensus 172 ~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~vl~l~~~~ 219 (235)
.+.. .+.+. +.+...+++|..+|||-|++-+....+|
T Consensus 396 s~t~----------n~~~~-sni~~a~~rf~asLPaqsvtTfv~~~ns 432 (433)
T COG5520 396 SSTL----------NMAKT-SNILAAGGRFNASLPAQSVTTFVWDLNS 432 (433)
T ss_pred ccch----------hhccc-cceeccCceeeeecCcccceeEEEeccC
Confidence 4421 12222 4455678999999999999988877665
No 11
>PLN02229 alpha-galactosidase
Probab=66.00 E-value=40 Score=32.13 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=41.9
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEE
Q 026638 133 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 212 (235)
Q Consensus 133 ~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~v 212 (235)
..+|.+.|++.++.++++++...+... ....++.=|-.. -+... ...+.+++++|||.+.+
T Consensus 354 ~~aValfN~~~~~~~v~v~~~~lGl~~--~~~~~VrDLW~~-----~dlg~------------~~~~~~~~~v~~Hg~~l 414 (427)
T PLN02229 354 RLVVALWNRCSEPATITASWDVIGLES--SISVSVRDLWKH-----KDLSE------------NVVGSFGAQVDAHDCHM 414 (427)
T ss_pred CEEEEEEeCCCCCEEEEEEHHHcCCCC--CCceEEEECCCC-----CccCc------------cccceEEEEECCCeEEE
Confidence 478999999988889998887443320 011222222211 11100 01356899999999999
Q ss_pred EEEeec
Q 026638 213 FDLLRE 218 (235)
Q Consensus 213 l~l~~~ 218 (235)
+|+...
T Consensus 415 ~rl~~~ 420 (427)
T PLN02229 415 YIFTPQ 420 (427)
T ss_pred EEEecc
Confidence 999874
No 12
>PLN02692 alpha-galactosidase
Probab=56.45 E-value=68 Score=30.45 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=41.0
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEE
Q 026638 133 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 212 (235)
Q Consensus 133 ~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~v 212 (235)
..+|.+.|+++.+.++++++..++... ....++.-|-.. -+... ...+.+++++|||.+.+
T Consensus 345 ~~aVal~N~~~~~~~i~~~~~~lgl~~--~~~~~vrDLW~~-----~~~g~------------~~~~~~~~~v~~Hg~~l 405 (412)
T PLN02692 345 RVALLLLNRGPWRNSITANWDDIGIPA--NSIVEARDLWEH-----KTLKQ------------HFVGNLTATVDSHACKM 405 (412)
T ss_pred CEEEEEEECCCCCEEEEEeHHHhCCCC--CCceEEEECCCC-----CccCc------------cccceEEEEECCceEEE
Confidence 478999999988888888876433210 011222223211 11110 02356899999999999
Q ss_pred EEEeec
Q 026638 213 FDLLRE 218 (235)
Q Consensus 213 l~l~~~ 218 (235)
+|+...
T Consensus 406 ~rl~~~ 411 (412)
T PLN02692 406 YILKPI 411 (412)
T ss_pred EEEecC
Confidence 999764
No 13
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=51.88 E-value=44 Score=32.48 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=34.1
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEEE
Q 026638 134 LRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 213 (235)
Q Consensus 134 l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~vl 213 (235)
.+|-++|.+.+++.++|.+.... .....-|.+++. +. ...++.++++|||+|+.+|
T Consensus 481 ~vlVv~N~s~~~~~v~l~~~~~~-------~~~~~dl~~~~~-----------~~------~~~~~~~~~~l~p~~~~~~ 536 (539)
T TIGR02456 481 RVLCVFNFSRNPQAVELDLSEFA-------GRVPVELIGGAP-----------FP------PVGGDGYLLTLGPHGFYWF 536 (539)
T ss_pred EEEEEEeCCCCCEEeeccccccc-------cCcceecccCCc-----------cc------cccCCcceEEECCceEEEE
Confidence 56778899988887777664321 111222222211 11 0123447889999999999
Q ss_pred EE
Q 026638 214 DL 215 (235)
Q Consensus 214 ~l 215 (235)
+|
T Consensus 537 ~~ 538 (539)
T TIGR02456 537 RL 538 (539)
T ss_pred Ee
Confidence 85
No 14
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=40.66 E-value=41 Score=25.45 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.2
Q ss_pred ceEEEEEEeCCCCcEEEEEEEccCC
Q 026638 132 SYLRIKVVNLGSSSVNLKVSVDGLG 156 (235)
Q Consensus 132 ~~l~vkvVN~~~~~~~~~i~l~g~~ 156 (235)
+...+++.|.+.+++.++|.+.|..
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~ 57 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLP 57 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-S
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC
Confidence 3579999999999999999999843
No 15
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=39.13 E-value=28 Score=33.45 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=38.1
Q ss_pred CCCCCcCccCCCCCCcEEEeccccccCCCCCCcHHHHHHHHHHHHHHHhcCCeEEeecc
Q 026638 2 FSKTHKFDHTSRTGPKAFVSEYAVTGNDAGTGSLLAALAEGGFLIGLEKNSDVVAMASY 60 (235)
Q Consensus 2 ~~~~~~yD~y~r~~pkv~vgEya~~~~~~g~~tl~dAL~eA~~L~~~eRnsD~V~mA~y 60 (235)
++.+.+|++|.|..-+.++.++|-- .++-.++|++-+. ..+.+| .|.|.|..|
T Consensus 192 A~e~~k~~k~~d~t~e~~v~g~a~~-~n~~~~~W~~~vl----~~~~e~-vD~ISlH~Y 244 (501)
T COG3534 192 ANEYRKYMKYFDPTIENVVCGSANG-ANPTDPNWEAVVL----EEAYER-VDYISLHYY 244 (501)
T ss_pred HHHHHHHHhhcCccccceEEeecCC-CCCCchHHHHHHH----HHHhhh-cCeEEEEEe
Confidence 4567889999999888999999853 2332345555444 445566 999999999
No 16
>PRK14706 glycogen branching enzyme; Provisional
Probab=38.06 E-value=1.6e+02 Score=29.59 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceE-EEEEecCCCCCCCC-CCCCceeeeeeeeEEeeCCeEEEEECCceE
Q 026638 134 LRIKVVNLGSSS-VNLKVSVDGLGPNSIKLSGST-KTQLTSTNLKDENS-FMEPNKVVPSLTLLENAAKDMDVVISPYSF 210 (235)
Q Consensus 134 l~vkvVN~~~~~-~~~~i~l~g~~~~~~~~~~~~-~~~L~~~d~~a~Nt-~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv 210 (235)
-+|.|+|.++.. ...+|.++. .++ ..+|.+++..-.-+ ..++ .+..+..........+.++|||.|.
T Consensus 547 ~vlvV~Nfs~~~~~~y~ig~p~---------~g~~~~i~nsd~~~~gG~g~~n~-~~~~~~~~~~g~~~si~i~lp~~~~ 616 (639)
T PRK14706 547 WSLAVANLTPVYREQYRIGVPQ---------GGEYRVLLSTDDGEYGGFGTQQP-DLMASQEGWHGQPHSLSLNLPPSSV 616 (639)
T ss_pred eEEEEEeCCCCCcCCeEECCCC---------CCeEEEEEcCCccccCCCCCCCC-ceeccccccCCCccEEEEEeCCcEE
Confidence 468889998743 455555442 122 34555443221111 0111 1322222223334588999999999
Q ss_pred EEEEEeec
Q 026638 211 TSFDLLRE 218 (235)
Q Consensus 211 ~vl~l~~~ 218 (235)
.|++..+.
T Consensus 617 ~~~~~~~~ 624 (639)
T PRK14706 617 LILEFVGD 624 (639)
T ss_pred EEEEECCC
Confidence 99988644
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=34.07 E-value=2e+02 Score=29.38 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=40.4
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceEEEEEecCCCC--CCCCCCCCceeeeeeeeEEeeCCeEEEEECCceE
Q 026638 134 LRIKVVNLGSSS-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLK--DENSFMEPNKVVPSLTLLENAAKDMDVVISPYSF 210 (235)
Q Consensus 134 l~vkvVN~~~~~-~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~--a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv 210 (235)
-+|.|+|.++.+ ..-+|.++. ...-..+|++++.. -.| ..+...+..+.....+....++++|||+|+
T Consensus 653 ~v~vV~Nft~~~~~~Y~ig~p~--------~G~~~eilNsd~~~ygG~~-~~n~~~~~~~~~~~~g~~~s~~i~lppl~~ 723 (730)
T PRK12568 653 PLLAVSNLTPQPHHDYRVGVPR--------AGGWREILNTDSAHYGGSN-LGNSGRLATEPTGMHGHAQSLRLTLPPLAT 723 (730)
T ss_pred eEEEEECCCCCCccCeEECCCC--------CCeEEEEEcCchhhhCCCC-cCCCCceeecccccCCCccEEEEEeCCCEE
Confidence 467788998755 334443331 11223445544321 112 233334443333334445688999999999
Q ss_pred EEEEEe
Q 026638 211 TSFDLL 216 (235)
Q Consensus 211 ~vl~l~ 216 (235)
.+|+..
T Consensus 724 ~~~~~~ 729 (730)
T PRK12568 724 IYLQAE 729 (730)
T ss_pred EEEEEC
Confidence 999864
No 18
>PRK12313 glycogen branching enzyme; Provisional
Probab=33.01 E-value=2e+02 Score=28.55 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=39.2
Q ss_pred EEEEEEeCCCCcE-EEEEEEccCCCCcccccceEEEEEecCCCCC--CCCCCCCceeeeeeeeEEeeCCeEEEEECCceE
Q 026638 134 LRIKVVNLGSSSV-NLKVSVDGLGPNSIKLSGSTKTQLTSTNLKD--ENSFMEPNKVVPSLTLLENAAKDMDVVISPYSF 210 (235)
Q Consensus 134 l~vkvVN~~~~~~-~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a--~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv 210 (235)
-+|.|+|.++.+. ...|.++- . +.- ..+|.+++..= .+. .+...+........+....+.+.|||+|.
T Consensus 552 ~llvv~N~s~~~~~~y~i~~p~---~----g~~-~~ilnsd~~~ygG~~~-~~~~~~~~~~~~~~g~~~~~~i~ip~~s~ 622 (633)
T PRK12313 552 FLVVVFNFTPVEREDYRIGVPV---A----GIY-EEILNTDSEEFGGSGK-GNNGTVKAQEGPWHGRPQSLTLTLPPLGA 622 (633)
T ss_pred eEEEEEeCCCCcccceeECCCC---C----CeE-EEEEcCCchhcCCCCc-CCCCceeecccccCCCCCEEEEEeCCCEE
Confidence 4677899987553 34554431 1 112 23455443221 111 11122222222223344578899999999
Q ss_pred EEEEEeec
Q 026638 211 TSFDLLRE 218 (235)
Q Consensus 211 ~vl~l~~~ 218 (235)
.|++.+.+
T Consensus 623 ~v~~~~~~ 630 (633)
T PRK12313 623 LVLKPKRR 630 (633)
T ss_pred EEEEEccc
Confidence 99987644
No 19
>PRK05402 glycogen branching enzyme; Provisional
Probab=31.62 E-value=2e+02 Score=29.12 Aligned_cols=73 Identities=10% Similarity=0.065 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCcE-EEEEEEccCCCCcccccceEE-EEEecCCCC--CCCCCCCCceeeeeeeeEEeeCCeEEEEECCce
Q 026638 134 LRIKVVNLGSSSV-NLKVSVDGLGPNSIKLSGSTK-TQLTSTNLK--DENSFMEPNKVVPSLTLLENAAKDMDVVISPYS 209 (235)
Q Consensus 134 l~vkvVN~~~~~~-~~~i~l~g~~~~~~~~~~~~~-~~L~~~d~~--a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~S 209 (235)
-+|.|+|.++++. ..+|.++. .++. ..|++++.. ..+.. +...+..+..........+.+.|||+|
T Consensus 648 ~vlvv~N~~~~~~~~y~i~~p~---------~g~~~~ilnsd~~~~gg~~~~-~~~~~~~~~~~~~g~~~~~~i~lp~~~ 717 (726)
T PRK05402 648 PLLVVCNFTPVPRHDYRLGVPQ---------AGRWREVLNTDAEHYGGSNVG-NGGGVHAEEVPWHGRPHSLSLTLPPLA 717 (726)
T ss_pred eEEEEEeCCCCcccceEECCCC---------CCeEEEEEcCcchhhCCCCCC-CCCceeccccccCCCCCEEEEEeCCCE
Confidence 4577899987543 45555442 1222 344444332 11211 222222222222334457899999999
Q ss_pred EEEEEEe
Q 026638 210 FTSFDLL 216 (235)
Q Consensus 210 v~vl~l~ 216 (235)
..|++..
T Consensus 718 ~~v~~~~ 724 (726)
T PRK05402 718 TLILKPE 724 (726)
T ss_pred EEEEEEc
Confidence 9998864
No 20
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=29.56 E-value=2e+02 Score=20.10 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.2
Q ss_pred EEEEEEeCCCCcEEEE
Q 026638 134 LRIKVVNLGSSSVNLK 149 (235)
Q Consensus 134 l~vkvVN~~~~~~~~~ 149 (235)
-.+-++|.+++++++.
T Consensus 44 ~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 44 RLLVAFNLSDEPVTVP 59 (89)
T ss_dssp EEEEEEE-SSS-EEEE
T ss_pred eEEEEEecCCCcEEcc
Confidence 5677899999887777
No 21
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=29.04 E-value=2.7e+02 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEccC
Q 026638 133 YLRIKVVNLGSSSVNLKVSVDGL 155 (235)
Q Consensus 133 ~l~vkvVN~~~~~~~~~i~l~g~ 155 (235)
.+.|.+-|.+.+++++++.+...
T Consensus 30 ~l~v~i~N~s~~~~tv~v~~~~A 52 (121)
T PF06030_consen 30 TLEVRITNNSDKEITVKVSANTA 52 (121)
T ss_pred EEEEEEEeCCCCCEEEEEEEeee
Confidence 59999999999999999998643
No 22
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=28.59 E-value=41 Score=26.61 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=25.7
Q ss_pred HhcCCeEEeeccceEeeecCCCCCCccEEEecCCc
Q 026638 49 EKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSAQ 83 (235)
Q Consensus 49 eRnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~~ 83 (235)
-.-+|+|.+++||.+=. .....|.|.++.+|.+.
T Consensus 79 ~~~GD~vII~ay~~~~~-~e~~~~~P~vv~vd~~N 112 (126)
T PRK05449 79 VQVGDLVIIAAYAQMDE-EEAKTHKPKVVFVDEDN 112 (126)
T ss_pred CCCCCEEEEEECccCCH-HHHhcCCCEEEEECCCC
Confidence 45689999999998643 33467899999986554
No 23
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=28.17 E-value=44 Score=26.36 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=26.7
Q ss_pred HHhcCCeEEeeccceEeeecCCCCCCccEEEecCCc
Q 026638 48 LEKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSAQ 83 (235)
Q Consensus 48 ~eRnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~~ 83 (235)
+-.-+|+|.+++|+++ +......+.|.++.+|.+.
T Consensus 77 l~~~GD~VII~sy~~~-~e~e~~~~~Pkvv~~d~~N 111 (126)
T COG0853 77 LVQVGDLVIIMSYAQM-SEEEAKTHKPKVVVVDEKN 111 (126)
T ss_pred hCCCCCEEEEEEcccC-CHHHHhccCCeEEEECCCC
Confidence 3457899999999986 4444567889999887654
No 24
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.25 E-value=47 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=24.2
Q ss_pred HhcCCeEEeeccceEeeecCCCCCCccEEEecCC
Q 026638 49 EKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSA 82 (235)
Q Consensus 49 eRnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~ 82 (235)
-.-+|+|.+++||.+= ......|.|.++.+|.+
T Consensus 78 ~~~GD~vII~sy~~~~-~~e~~~~~P~vv~vd~~ 110 (111)
T cd06919 78 GQPGDRVIIMAYALMD-EEEAEGHKPKVVLVDEK 110 (111)
T ss_pred CCCCCEEEEEECccCC-HHHHhcCCCEEEEeCCC
Confidence 4567999999999863 33345688888887653
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=26.67 E-value=3.1e+02 Score=28.20 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=39.9
Q ss_pred EEEEEeCCCC-c-EEEEEEEccCCCCcccccceEEEEEecCCCCC--CCCCCCCceeeeeeeeEEeeCCeEEEEECCceE
Q 026638 135 RIKVVNLGSS-S-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKD--ENSFMEPNKVVPSLTLLENAAKDMDVVISPYSF 210 (235)
Q Consensus 135 ~vkvVN~~~~-~-~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a--~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv 210 (235)
.|+|.|.++. . ...+|-++ . ...-..+|.+++..- .+..++.......+.........+.+.+||.|.
T Consensus 654 ll~V~NF~p~~s~~~Y~igvp---~-----~G~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~ 725 (758)
T PLN02447 654 LVFVFNFHPTNSYSDYRVGCD---K-----PGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTA 725 (758)
T ss_pred eEEEEeCCCCCCCCCcEECCC---C-----CCeEEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceE
Confidence 4788999973 3 44554333 1 112235565543211 111222211222222233445688999999999
Q ss_pred EEEEEeec
Q 026638 211 TSFDLLRE 218 (235)
Q Consensus 211 ~vl~l~~~ 218 (235)
.||+....
T Consensus 726 ~vl~~~~~ 733 (758)
T PLN02447 726 VVYAPVDE 733 (758)
T ss_pred EEEEECCc
Confidence 99988544
No 26
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.00 E-value=2.5e+02 Score=30.58 Aligned_cols=74 Identities=11% Similarity=0.204 Sum_probs=40.8
Q ss_pred EEEEEEeCCCCcEE-EEEEEccCCCCcccccceEEEEEecCCCC--CCCCCCCCceeeeeeeeEEeeCCeEEEEECCceE
Q 026638 134 LRIKVVNLGSSSVN-LKVSVDGLGPNSIKLSGSTKTQLTSTNLK--DENSFMEPNKVVPSLTLLENAAKDMDVVISPYSF 210 (235)
Q Consensus 134 l~vkvVN~~~~~~~-~~i~l~g~~~~~~~~~~~~~~~L~~~d~~--a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv 210 (235)
-+|.|+|.++.+.. .+|-++. ...-..+|++++.. -.|. .+...+..+..........+.++|||+|.
T Consensus 1147 ~vlvv~Nftp~~~~~y~igvp~--------~G~y~eilnsd~~~ygGsg~-~n~~~~~~~~~~~~g~~~s~~i~lPpl~~ 1217 (1224)
T PRK14705 1147 PLVCAINFSGGPHKGYTLGVPA--------AGAWTEVLNTDHETYGGSGV-LNPGSLKATTEGQDGQPATLTVTLPPLGA 1217 (1224)
T ss_pred EEEEEEcCCCCCccCceECCCC--------CCeEEEEEeCchhhcCCCCc-CCCCceeecccccCCCCceEEEEecCCEE
Confidence 36778999886644 5554432 11223455554432 1221 23333433333333444578999999999
Q ss_pred EEEEEe
Q 026638 211 TSFDLL 216 (235)
Q Consensus 211 ~vl~l~ 216 (235)
.+++..
T Consensus 1218 ~~~~~~ 1223 (1224)
T PRK14705 1218 SFFAPA 1223 (1224)
T ss_pred EEEEEC
Confidence 998753
No 27
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=25.19 E-value=63 Score=21.35 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=10.5
Q ss_pred EEEEEEeCCCCcEEEEE
Q 026638 134 LRIKVVNLGSSSVNLKV 150 (235)
Q Consensus 134 l~vkvVN~~~~~~~~~i 150 (235)
-++|+.|.+.+++++++
T Consensus 13 ~y~F~~N~s~~~~~v~l 29 (58)
T PF08533_consen 13 RYLFLLNFSDEPQTVTL 29 (58)
T ss_dssp TEEEEEE-SSS-EE---
T ss_pred EEEEEEECCCCCEEEEc
Confidence 47899999999988776
No 28
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=24.94 E-value=52 Score=26.04 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=25.6
Q ss_pred HhcCCeEEeeccceEeeecCCCCCCccEEEecCCc
Q 026638 49 EKNSDVVAMASYAPLFVNANDRRWKPDAIVFNSAQ 83 (235)
Q Consensus 49 eRnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~~ 83 (235)
-.-+|+|.+++||.+- ......|.|.++..|.+.
T Consensus 79 ~~~GD~VII~sy~~~~-~~e~~~~~P~vv~vd~~N 112 (126)
T TIGR00223 79 VSVGDIVIIASYVTMP-DEEARTHRPNVAYFEGDN 112 (126)
T ss_pred CCCCCEEEEEECCcCC-HHHHhcCCCEEEEECCCC
Confidence 4567999999999863 344466899999887654
No 29
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=22.30 E-value=4.1e+02 Score=27.03 Aligned_cols=63 Identities=11% Similarity=0.327 Sum_probs=42.9
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCceeeeeeeeEEeeCCeEEEEECCceEEE
Q 026638 133 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 212 (235)
Q Consensus 133 ~l~vkvVN~~~~~~~~~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lp~~Sv~v 212 (235)
.+.|.+.|.+.+++.++|++.++.. ....-|.++. .+... .+++.++++|+||....
T Consensus 622 ~~~L~v~Nfs~~~~~~~l~l~~~~~-------~~~~dl~~~~-----~~~~~-----------~~~~~~~i~L~~y~~~w 678 (688)
T TIGR02455 622 GIQITALNFGADAIAEEICLPGFAP-------GPVVDIIHES-----VEGDL-----------TDDCELMINLDPYEALA 678 (688)
T ss_pred ceEEEeeccCCCCeeeEEeccccCC-------CCceeccCCC-----ccCCc-----------CCCceeEEEecCcceEE
Confidence 3789999999999999999987643 1223332322 11110 14578999999999999
Q ss_pred EEEeec
Q 026638 213 FDLLRE 218 (235)
Q Consensus 213 l~l~~~ 218 (235)
|++...
T Consensus 679 l~~~~~ 684 (688)
T TIGR02455 679 LRIVNA 684 (688)
T ss_pred EEeccc
Confidence 988654
No 30
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=21.37 E-value=34 Score=26.67 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=20.5
Q ss_pred hcCCeEEeeccceEeeecCCCCCCccEEEecCCc
Q 026638 50 KNSDVVAMASYAPLFVNANDRRWKPDAIVFNSAQ 83 (235)
Q Consensus 50 RnsD~V~mA~yApl~~~~~~~~W~p~li~~~~~~ 83 (235)
+-+|+|.+++|+++= ......|.|.++.+|.+.
T Consensus 80 ~~GD~vII~sy~~~~-~~e~~~~~P~vv~vd~~N 112 (116)
T PF02261_consen 80 QVGDRVIIMSYAQVD-EEEAKNHKPKVVFVDEKN 112 (116)
T ss_dssp -TT-EEEEEEEEEEE-HHHHHH---EEEEEETTS
T ss_pred CCCCEEEEEEcccCC-HHHHhhCCCEEEEECCCC
Confidence 457999999999874 333456899999887553
No 31
>PLN02960 alpha-amylase
Probab=20.61 E-value=4.1e+02 Score=27.94 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.2
Q ss_pred eeCCeEEEEECCceEEEEEEe
Q 026638 196 NAAKDMDVVISPYSFTSFDLL 216 (235)
Q Consensus 196 ~~~~~~~~~lp~~Sv~vl~l~ 216 (235)
.....+.++|||.|..|+++.
T Consensus 872 g~~~si~i~LPp~sa~v~k~~ 892 (897)
T PLN02960 872 GLRNCLELTLPSRSAQVYKLA 892 (897)
T ss_pred CCCceEEEEeCCCEEEEEEEe
Confidence 345678899999999999874
No 32
>PF10939 DUF2631: Protein of unknown function (DUF2631) ; InterPro: IPR024341 This entry represents a bacterial protein of unknown function.
Probab=20.18 E-value=95 Score=21.73 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.2
Q ss_pred eccccccCCCCCCcHHHHHHHHHHHHHHHh
Q 026638 21 SEYAVTGNDAGTGSLLAALAEGGFLIGLEK 50 (235)
Q Consensus 21 gEya~~~~~~g~~tl~dAL~eA~~L~~~eR 50 (235)
-||| |+....+..-..++..+.+|..|+.
T Consensus 20 a~WG-Whg~~~r~~~i~g~~~~~~Ll~ml~ 48 (65)
T PF10939_consen 20 AAWG-WHGENPRAFRIAGWISALFLLAMLI 48 (65)
T ss_pred cccc-ccCCCCceeeehHHHHHHHHHHHHh
Confidence 5788 6543334556788888888888875
Done!